Query 005632
Match_columns 687
No_of_seqs 1221 out of 3936
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 03:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-41 7.5E-46 346.6 43.8 368 38-425 3-370 (388)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-40 8.4E-45 359.6 39.8 459 32-618 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.3E-40 3.2E-44 334.5 40.3 359 31-409 30-388 (388)
4 2xpi_A Anaphase-promoting comp 100.0 1.6E-40 5.5E-45 361.1 30.6 484 66-686 82-591 (597)
5 2gw1_A Mitochondrial precursor 100.0 4.6E-36 1.6E-40 319.7 34.8 373 33-427 5-482 (514)
6 2y4t_A DNAJ homolog subfamily 100.0 1.5E-34 5.1E-39 302.4 41.4 375 29-413 21-444 (450)
7 3fp2_A TPR repeat-containing p 100.0 4.2E-35 1.4E-39 314.1 36.5 451 33-613 24-502 (537)
8 3ieg_A DNAJ homolog subfamily 100.0 2.1E-33 7.1E-38 284.2 41.7 323 33-363 2-355 (359)
9 3fp2_A TPR repeat-containing p 100.0 2.1E-35 7.2E-40 316.4 27.6 450 67-647 24-498 (537)
10 2gw1_A Mitochondrial precursor 100.0 4.7E-34 1.6E-38 304.2 36.3 427 67-616 5-492 (514)
11 2y4t_A DNAJ homolog subfamily 100.0 7E-34 2.4E-38 297.3 36.5 336 49-404 7-373 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 1.2E-32 4E-37 278.6 36.9 322 67-408 2-354 (359)
13 3hym_B Cell division cycle pro 100.0 7.2E-31 2.5E-35 262.1 32.7 303 30-365 18-322 (330)
14 4g1t_A Interferon-induced prot 100.0 3E-30 1E-34 271.4 34.9 359 36-424 53-460 (472)
15 3hym_B Cell division cycle pro 100.0 3.2E-30 1.1E-34 257.5 32.6 257 33-294 55-320 (330)
16 1fch_A Peroxisomal targeting s 100.0 2.9E-30 1E-34 262.1 30.7 316 46-378 13-360 (368)
17 4g1t_A Interferon-induced prot 100.0 6E-30 2.1E-34 269.2 29.5 359 34-424 9-402 (472)
18 2xm6_A Protein corresponding t 100.0 9.7E-27 3.3E-31 245.1 48.1 352 33-424 38-433 (490)
19 1fch_A Peroxisomal targeting s 100.0 1.8E-29 6E-34 256.3 25.8 295 43-344 34-360 (368)
20 4eqf_A PEX5-related protein; a 100.0 2.3E-28 8E-33 247.6 29.4 285 89-379 48-358 (365)
21 2xm6_A Protein corresponding t 100.0 4E-26 1.4E-30 240.4 45.3 332 52-423 25-396 (490)
22 4eqf_A PEX5-related protein; a 100.0 5E-28 1.7E-32 245.2 24.8 268 69-342 66-355 (365)
23 2ooe_A Cleavage stimulation fa 100.0 7.3E-26 2.5E-30 240.9 41.3 351 57-423 2-420 (530)
24 3cv0_A Peroxisome targeting si 100.0 1.3E-26 4.3E-31 231.0 31.6 285 69-382 22-320 (327)
25 3cv0_A Peroxisome targeting si 100.0 5.2E-27 1.8E-31 233.7 27.7 268 33-306 20-313 (327)
26 2h6f_A Protein farnesyltransfe 100.0 6.6E-27 2.3E-31 234.0 27.8 258 95-361 90-366 (382)
27 2h6f_A Protein farnesyltransfe 100.0 1.2E-26 4E-31 232.1 27.1 251 33-291 96-365 (382)
28 2ooe_A Cleavage stimulation fa 100.0 5.8E-25 2E-29 234.0 38.7 377 31-425 10-494 (530)
29 2pl2_A Hypothetical conserved 99.9 3.4E-26 1.2E-30 212.0 22.4 200 31-233 2-212 (217)
30 3mkr_A Coatomer subunit epsilo 99.9 1.8E-24 6.2E-29 209.6 30.7 277 41-335 6-286 (291)
31 2pl2_A Hypothetical conserved 99.9 2.9E-25 9.8E-30 205.8 23.4 200 65-271 2-212 (217)
32 3u4t_A TPR repeat-containing p 99.9 4.1E-25 1.4E-29 213.6 25.2 251 35-289 4-265 (272)
33 3uq3_A Heat shock protein STI1 99.9 4.2E-24 1.5E-28 204.6 29.0 240 101-357 4-256 (258)
34 3uq3_A Heat shock protein STI1 99.9 2.7E-24 9.1E-29 206.0 27.3 240 33-287 4-255 (258)
35 3mkr_A Coatomer subunit epsilo 99.9 6.2E-24 2.1E-28 205.8 28.5 277 76-372 7-289 (291)
36 3u4t_A TPR repeat-containing p 99.9 1.4E-24 4.7E-29 209.9 23.8 260 67-361 2-268 (272)
37 3sf4_A G-protein-signaling mod 99.9 1.1E-24 3.8E-29 224.0 24.5 304 31-367 6-366 (406)
38 3e4b_A ALGK; tetratricopeptide 99.9 7.2E-25 2.5E-29 226.8 22.0 347 38-424 7-388 (452)
39 3sf4_A G-protein-signaling mod 99.9 1.8E-24 6.1E-29 222.5 23.0 321 68-423 9-383 (406)
40 4a1s_A PINS, partner of inscut 99.9 3.8E-23 1.3E-27 213.0 26.8 283 31-346 45-375 (411)
41 3e4b_A ALGK; tetratricopeptide 99.9 1.5E-23 5E-28 217.0 20.8 317 72-423 7-351 (452)
42 2q7f_A YRRB protein; TPR, prot 99.9 3.9E-23 1.3E-27 195.9 22.1 220 31-256 20-239 (243)
43 4a1s_A PINS, partner of inscut 99.9 2.7E-23 9.2E-28 214.1 22.5 283 69-381 49-376 (411)
44 3ro2_A PINS homolog, G-protein 99.9 6.5E-23 2.2E-27 204.8 24.5 281 33-346 4-335 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.7E-23 1.3E-27 200.2 22.0 250 45-337 16-269 (275)
46 3vtx_A MAMA; tetratricopeptide 99.9 2.4E-22 8.3E-27 181.3 23.3 171 33-203 4-174 (184)
47 3ro2_A PINS homolog, G-protein 99.9 1.8E-22 6.1E-27 201.6 24.6 276 105-380 8-335 (338)
48 1xi4_A Clathrin heavy chain; a 99.9 3.2E-20 1.1E-24 202.6 42.5 326 40-421 1055-1382(1630)
49 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-22 1.9E-26 191.9 26.0 251 75-371 12-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.9 1.8E-21 6E-26 185.6 27.5 200 34-235 37-238 (252)
51 2q7f_A YRRB protein; TPR, prot 99.9 3.7E-22 1.3E-26 189.2 22.1 217 67-290 22-238 (243)
52 2vq2_A PILW, putative fimbrial 99.9 4.4E-21 1.5E-25 179.2 28.9 203 31-235 5-211 (225)
53 3vtx_A MAMA; tetratricopeptide 99.9 1.2E-21 4.2E-26 176.7 23.9 168 66-235 3-170 (184)
54 1ouv_A Conserved hypothetical 99.9 1.5E-20 5.2E-25 181.4 31.7 230 65-348 3-256 (273)
55 1ouv_A Conserved hypothetical 99.9 1.7E-20 5.9E-25 181.0 31.7 228 31-276 3-254 (273)
56 3ulq_A Response regulator aspa 99.9 2.7E-21 9.2E-26 196.8 27.0 312 31-345 9-370 (383)
57 2vq2_A PILW, putative fimbrial 99.9 7.1E-21 2.4E-25 177.9 27.6 212 63-281 3-218 (225)
58 2ho1_A Type 4 fimbrial biogene 99.9 3.7E-21 1.3E-25 183.4 25.3 212 63-281 31-245 (252)
59 4abn_A Tetratricopeptide repea 99.9 5.1E-22 1.7E-26 206.8 20.8 216 82-305 82-318 (474)
60 1xi4_A Clathrin heavy chain; a 99.9 6.3E-19 2.1E-23 192.6 43.6 456 40-638 991-1456(1630)
61 2ond_A Cleavage stimulation fa 99.9 4.8E-21 1.7E-25 188.1 24.1 222 51-275 33-272 (308)
62 2ond_A Cleavage stimulation fa 99.9 9.8E-21 3.3E-25 185.9 25.8 253 85-356 33-305 (308)
63 4i17_A Hypothetical protein; T 99.9 4.8E-21 1.6E-25 179.4 22.1 210 33-255 6-225 (228)
64 4abn_A Tetratricopeptide repea 99.9 6.5E-21 2.2E-25 198.5 23.4 217 116-340 82-318 (474)
65 4gyw_A UDP-N-acetylglucosamine 99.9 6.8E-21 2.3E-25 205.4 22.9 173 29-201 4-176 (723)
66 4gyw_A UDP-N-acetylglucosamine 99.9 8.2E-21 2.8E-25 204.8 21.8 172 63-236 4-175 (723)
67 4i17_A Hypothetical protein; T 99.9 3.2E-20 1.1E-24 173.8 22.4 212 65-290 4-225 (228)
68 3ulq_A Response regulator aspa 99.9 2.6E-20 8.8E-25 189.5 21.7 310 68-379 12-370 (383)
69 3qky_A Outer membrane assembly 99.9 4.7E-20 1.6E-24 176.6 21.1 174 31-204 12-229 (261)
70 1b89_A Protein (clathrin heavy 99.8 2E-20 6.7E-25 184.0 17.5 381 79-622 14-403 (449)
71 1hz4_A MALT regulatory protein 99.8 1.6E-18 5.5E-23 175.7 31.8 304 35-346 15-352 (373)
72 3nf1_A KLC 1, kinesin light ch 99.8 2.2E-20 7.6E-25 184.1 16.9 175 26-200 19-225 (311)
73 3nf1_A KLC 1, kinesin light ch 99.8 5.3E-20 1.8E-24 181.4 19.4 256 64-346 23-310 (311)
74 3q15_A PSP28, response regulat 99.8 6.5E-19 2.2E-23 178.7 27.8 312 31-344 9-366 (378)
75 3qky_A Outer membrane assembly 99.8 2.4E-19 8.3E-24 171.6 23.2 201 61-262 8-250 (261)
76 3dra_A Protein farnesyltransfe 99.8 1.2E-18 4.2E-23 166.6 27.0 252 31-286 29-300 (306)
77 1hz4_A MALT regulatory protein 99.8 3.5E-18 1.2E-22 173.1 29.8 278 68-345 14-324 (373)
78 3urz_A Uncharacterized protein 99.8 2.6E-19 8.9E-24 164.3 18.8 170 33-203 3-190 (208)
79 4e6h_A MRNA 3'-END-processing 99.8 3.2E-16 1.1E-20 166.9 45.0 442 49-612 47-580 (679)
80 3as5_A MAMA; tetratricopeptide 99.8 9.5E-19 3.3E-23 157.7 21.0 172 33-204 7-178 (186)
81 1b89_A Protein (clathrin heavy 99.8 5.5E-20 1.9E-24 180.8 13.3 324 45-424 14-356 (449)
82 4ga2_A E3 SUMO-protein ligase 99.8 3.6E-20 1.2E-24 159.8 10.6 144 41-184 4-148 (150)
83 4e6h_A MRNA 3'-END-processing 99.8 1.4E-16 4.6E-21 169.8 39.4 472 83-683 47-579 (679)
84 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-19 4.4E-24 156.4 12.1 147 73-221 2-149 (150)
85 2pzi_A Probable serine/threoni 99.8 2.3E-19 7.8E-24 195.3 16.9 188 62-259 388-583 (681)
86 3q15_A PSP28, response regulat 99.8 1.7E-17 5.9E-22 168.1 28.9 240 172-424 103-366 (378)
87 1qqe_A Vesicular transport pro 99.8 2.1E-18 7.2E-23 167.6 21.0 161 75-235 44-228 (292)
88 3dra_A Protein farnesyltransfe 99.8 3E-17 1E-21 157.1 28.2 237 80-355 44-300 (306)
89 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.4E-18 1.5E-22 158.4 21.2 186 33-235 3-213 (225)
90 2pzi_A Probable serine/threoni 99.8 1.2E-18 4E-23 189.7 19.3 187 45-234 402-597 (681)
91 3as5_A MAMA; tetratricopeptide 99.8 1.1E-17 3.8E-22 150.6 22.5 169 67-237 7-175 (186)
92 3urz_A Uncharacterized protein 99.8 2.2E-18 7.6E-23 158.1 17.3 166 67-235 3-186 (208)
93 3edt_B KLC 2, kinesin light ch 99.8 4.1E-18 1.4E-22 165.2 17.5 224 45-271 12-279 (283)
94 1qqe_A Vesicular transport pro 99.8 5.6E-18 1.9E-22 164.6 18.0 199 37-235 40-269 (292)
95 3dss_A Geranylgeranyl transfer 99.8 5.7E-16 2E-20 148.7 31.3 234 36-275 31-306 (331)
96 4gco_A Protein STI-1; structur 99.8 8.1E-18 2.8E-22 139.9 14.5 117 63-179 8-124 (126)
97 2r5s_A Uncharacterized protein 99.8 5.1E-18 1.7E-22 151.3 14.1 163 35-198 7-172 (176)
98 2r5s_A Uncharacterized protein 99.8 5.6E-18 1.9E-22 151.0 14.3 171 64-235 2-173 (176)
99 3qou_A Protein YBBN; thioredox 99.8 4.4E-17 1.5E-21 157.6 20.0 165 33-197 116-282 (287)
100 2yhc_A BAMD, UPF0169 lipoprote 99.7 6.7E-17 2.3E-21 150.4 19.8 193 67-276 3-216 (225)
101 3edt_B KLC 2, kinesin light ch 99.7 2.6E-17 8.9E-22 159.5 17.1 155 79-235 12-198 (283)
102 3q7a_A Farnesyltransferase alp 99.7 5.5E-16 1.9E-20 149.3 25.3 192 29-222 48-258 (349)
103 3qou_A Protein YBBN; thioredox 99.7 8.7E-17 3E-21 155.5 19.4 172 64-235 113-284 (287)
104 4gco_A Protein STI-1; structur 99.7 7.6E-17 2.6E-21 134.0 15.8 118 29-146 7-125 (126)
105 2vsy_A XCC0866; transferase, g 99.7 1.8E-16 6.1E-21 169.9 21.0 165 47-213 2-169 (568)
106 3gyz_A Chaperone protein IPGC; 99.7 2.3E-17 7.7E-22 141.1 10.1 113 57-169 25-137 (151)
107 3q7a_A Farnesyltransferase alp 99.7 2.5E-15 8.5E-20 144.7 24.5 266 70-356 56-345 (349)
108 3gyz_A Chaperone protein IPGC; 99.7 5.4E-17 1.9E-21 138.7 11.2 118 87-204 21-138 (151)
109 3dss_A Geranylgeranyl transfer 99.7 2.2E-14 7.6E-19 137.7 30.3 247 80-358 41-319 (331)
110 4f3v_A ESX-1 secretion system 99.7 2.1E-16 7.1E-21 147.1 12.0 202 31-235 4-237 (282)
111 2ifu_A Gamma-SNAP; membrane fu 99.7 2.6E-15 8.7E-20 147.0 20.5 165 46-235 3-184 (307)
112 2vgx_A Chaperone SYCD; alterna 99.7 2E-16 6.8E-21 135.8 9.9 116 90-205 9-124 (148)
113 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-15 3.7E-20 131.1 14.3 122 52-173 5-126 (148)
114 4f3v_A ESX-1 secretion system 99.7 1.3E-15 4.5E-20 141.7 15.8 211 139-356 10-249 (282)
115 2ifu_A Gamma-SNAP; membrane fu 99.7 8.2E-15 2.8E-19 143.4 21.9 173 47-235 29-223 (307)
116 2vsy_A XCC0866; transferase, g 99.7 1.8E-15 6.3E-20 162.1 18.7 165 81-251 2-169 (568)
117 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-14 3.7E-19 133.8 20.2 175 51-235 3-197 (212)
118 1p5q_A FKBP52, FK506-binding p 99.6 3.8E-17 1.3E-21 161.7 3.8 185 47-235 78-294 (336)
119 2c2l_A CHIP, carboxy terminus 99.6 7.7E-16 2.6E-20 148.2 12.5 196 32-234 2-198 (281)
120 2fo7_A Synthetic consensus TPR 99.6 1.5E-14 5.2E-19 122.2 18.8 132 70-201 3-134 (136)
121 1p5q_A FKBP52, FK506-binding p 99.6 5.7E-16 2E-20 153.2 10.7 154 46-199 125-294 (336)
122 2xcb_A PCRH, regulatory protei 99.6 9.1E-16 3.1E-20 131.0 10.2 116 90-205 6-121 (142)
123 2fo7_A Synthetic consensus TPR 99.6 2.7E-14 9.1E-19 120.7 19.1 134 36-169 3-136 (136)
124 2c2l_A CHIP, carboxy terminus 99.6 2.6E-15 8.9E-20 144.5 13.6 103 66-168 2-104 (281)
125 2xcb_A PCRH, regulatory protei 99.6 6.3E-15 2.1E-19 125.8 13.9 125 55-179 5-129 (142)
126 3upv_A Heat shock protein STI1 99.6 2.6E-14 8.8E-19 119.2 16.2 114 33-146 3-122 (126)
127 3upv_A Heat shock protein STI1 99.6 2.5E-14 8.4E-19 119.3 15.7 118 65-182 1-124 (126)
128 2e2e_A Formate-dependent nitri 99.6 6.3E-15 2.2E-19 131.4 12.8 130 44-173 20-152 (177)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5E-14 1.7E-18 129.9 18.4 134 33-169 5-154 (213)
130 3rjv_A Putative SEL1 repeat pr 99.6 8E-14 2.7E-18 127.9 19.4 179 85-275 3-199 (212)
131 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-13 5.1E-18 133.6 22.0 175 63-237 70-268 (293)
132 1dce_A Protein (RAB geranylger 99.6 6.3E-14 2.1E-18 147.6 19.9 186 37-224 31-244 (567)
133 1a17_A Serine/threonine protei 99.6 1.2E-13 4E-18 121.6 18.4 130 34-163 13-144 (166)
134 3mv2_B Coatomer subunit epsilo 99.6 3.3E-13 1.1E-17 127.2 21.7 246 41-315 20-288 (310)
135 1a17_A Serine/threonine protei 99.6 1.6E-13 5.4E-18 120.7 18.2 128 69-196 14-143 (166)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.1E-13 7.1E-18 125.6 19.7 134 68-204 6-155 (213)
137 2lni_A Stress-induced-phosphop 99.6 8.3E-14 2.8E-18 117.3 15.3 123 28-150 10-132 (133)
138 2lni_A Stress-induced-phosphop 99.6 1E-13 3.5E-18 116.7 15.9 122 64-185 12-133 (133)
139 2vyi_A SGTA protein; chaperone 99.6 9E-14 3.1E-18 116.6 15.1 117 34-150 12-128 (131)
140 2e2e_A Formate-dependent nitri 99.6 8.4E-14 2.9E-18 124.0 15.7 128 78-205 20-150 (177)
141 2fbn_A 70 kDa peptidylprolyl i 99.6 9.9E-15 3.4E-19 132.7 9.7 146 45-190 15-176 (198)
142 3mv2_B Coatomer subunit epsilo 99.5 5.5E-13 1.9E-17 125.8 21.6 275 67-371 13-306 (310)
143 3sz7_A HSC70 cochaperone (SGT) 99.5 1.4E-13 4.9E-18 120.7 16.0 114 31-144 8-121 (164)
144 2fbn_A 70 kDa peptidylprolyl i 99.5 1.6E-14 5.6E-19 131.3 10.0 164 68-233 4-184 (198)
145 2vyi_A SGTA protein; chaperone 99.5 1.7E-13 5.9E-18 114.9 15.6 125 63-187 7-131 (131)
146 3u3w_A Transcriptional activat 99.5 1.6E-13 5.5E-18 133.3 17.1 168 70-237 77-268 (293)
147 2qfc_A PLCR protein; TPR, HTH, 99.5 7.5E-13 2.6E-17 128.5 21.5 176 99-274 72-267 (293)
148 3sz7_A HSC70 cochaperone (SGT) 99.5 4E-13 1.4E-17 117.8 17.3 107 99-205 8-114 (164)
149 1na0_A Designed protein CTPR3; 99.5 8.8E-13 3E-17 109.4 17.6 116 68-183 9-124 (125)
150 4gcn_A Protein STI-1; structur 99.5 2.3E-13 7.7E-18 113.1 13.3 61 39-99 13-73 (127)
151 1hxi_A PEX5, peroxisome target 99.5 1.3E-13 4.5E-18 113.4 11.7 101 36-136 19-119 (121)
152 4gcn_A Protein STI-1; structur 99.5 4.1E-13 1.4E-17 111.5 14.6 110 67-177 7-123 (127)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.1E-14 7.1E-19 148.4 8.1 143 48-190 248-405 (457)
154 3q49_B STIP1 homology and U bo 99.5 3.7E-13 1.3E-17 114.0 14.3 104 65-168 6-109 (137)
155 2uy1_A Cleavage stimulation fa 99.5 1.1E-10 3.8E-15 121.0 35.4 363 32-424 12-414 (493)
156 2hr2_A Hypothetical protein; a 99.5 1.8E-13 6.1E-18 114.7 11.6 116 33-170 10-136 (159)
157 1hxi_A PEX5, peroxisome target 99.5 2.6E-13 8.9E-18 111.6 12.0 100 70-169 19-118 (121)
158 1elw_A TPR1-domain of HOP; HOP 99.5 1.5E-12 5E-17 106.8 16.4 112 34-145 4-115 (118)
159 3rkv_A Putative peptidylprolyl 99.5 2.9E-13 1E-17 118.4 12.8 114 32-145 9-141 (162)
160 1elw_A TPR1-domain of HOP; HOP 99.5 1.8E-12 6.3E-17 106.2 16.2 114 67-180 3-116 (118)
161 2hr2_A Hypothetical protein; a 99.5 3.2E-13 1.1E-17 113.2 11.4 115 69-205 12-137 (159)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.1E-13 3.8E-18 142.9 10.3 152 80-233 246-413 (457)
163 3gw4_A Uncharacterized protein 99.5 6.4E-13 2.2E-17 121.3 14.3 157 44-200 2-177 (203)
164 1na0_A Designed protein CTPR3; 99.5 3.3E-12 1.1E-16 105.8 17.4 118 33-150 8-125 (125)
165 3u3w_A Transcriptional activat 99.5 4.5E-13 1.6E-17 130.1 13.7 170 105-274 78-267 (293)
166 3q49_B STIP1 homology and U bo 99.5 2E-12 6.7E-17 109.5 16.0 106 97-202 4-109 (137)
167 3rkv_A Putative peptidylprolyl 99.5 6.5E-13 2.2E-17 116.2 13.3 117 67-183 10-145 (162)
168 2xev_A YBGF; tetratricopeptide 99.4 3.4E-12 1.2E-16 106.7 16.6 109 37-145 5-119 (129)
169 2dba_A Smooth muscle cell asso 99.4 2.8E-12 9.6E-17 110.1 16.3 116 31-146 25-143 (148)
170 2xev_A YBGF; tetratricopeptide 99.4 3.2E-12 1.1E-16 106.9 16.0 114 69-182 3-122 (129)
171 2dba_A Smooth muscle cell asso 99.4 3.5E-12 1.2E-16 109.5 15.9 120 63-182 23-145 (148)
172 3gw4_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 115.6 17.4 157 79-235 3-176 (203)
173 1dce_A Protein (RAB geranylger 99.4 3.5E-12 1.2E-16 134.3 18.6 174 83-262 44-244 (567)
174 4b4t_Q 26S proteasome regulato 99.4 4E-11 1.4E-15 123.9 25.8 200 36-235 6-245 (434)
175 2kck_A TPR repeat; tetratricop 99.4 2E-12 7E-17 104.8 11.5 104 65-168 3-109 (112)
176 2kck_A TPR repeat; tetratricop 99.4 2.9E-12 1E-16 103.9 12.1 107 98-204 2-111 (112)
177 2if4_A ATFKBP42; FKBP-like, al 99.4 6.3E-13 2.2E-17 131.3 9.3 156 33-205 178-334 (338)
178 1elr_A TPR2A-domain of HOP; HO 99.4 3.9E-12 1.3E-16 106.5 12.8 98 36-133 6-110 (131)
179 1wao_1 Serine/threonine protei 99.4 1.5E-13 5E-18 142.5 4.5 127 68-194 6-134 (477)
180 2if4_A ATFKBP42; FKBP-like, al 99.4 4.2E-13 1.4E-17 132.6 7.4 153 65-236 176-329 (338)
181 1elr_A TPR2A-domain of HOP; HO 99.4 6.8E-12 2.3E-16 105.0 13.8 119 66-185 2-127 (131)
182 1zu2_A Mitochondrial import re 99.4 1.2E-12 4.1E-17 109.4 8.8 70 47-116 15-94 (158)
183 1wao_1 Serine/threonine protei 99.4 1.8E-13 6.1E-18 141.9 4.3 135 35-169 7-154 (477)
184 3k9i_A BH0479 protein; putativ 99.4 2E-12 6.9E-17 105.8 9.4 93 81-173 3-98 (117)
185 1ihg_A Cyclophilin 40; ppiase 99.3 9.7E-12 3.3E-16 124.0 15.3 140 34-191 223-362 (370)
186 4b4t_Q 26S proteasome regulato 99.3 1.1E-10 3.6E-15 120.6 23.8 206 68-273 4-245 (434)
187 3k9i_A BH0479 protein; putativ 99.3 1.2E-12 4E-17 107.2 6.9 100 46-145 2-104 (117)
188 2uy1_A Cleavage stimulation fa 99.3 3.3E-10 1.1E-14 117.5 26.3 335 46-420 6-380 (493)
189 1ihg_A Cyclophilin 40; ppiase 99.3 1.4E-11 4.6E-16 123.0 15.0 141 68-228 223-363 (370)
190 1zu2_A Mitochondrial import re 99.3 6.2E-12 2.1E-16 105.1 9.2 91 80-170 14-125 (158)
191 3ro3_A PINS homolog, G-protein 99.3 4.6E-11 1.6E-15 104.2 12.6 27 37-63 12-38 (164)
192 3ro3_A PINS homolog, G-protein 99.2 5.6E-11 1.9E-15 103.7 12.9 136 67-202 8-161 (164)
193 2kat_A Uncharacterized protein 99.1 6.2E-10 2.1E-14 90.5 12.3 84 121-204 4-87 (115)
194 2kat_A Uncharacterized protein 99.1 2.7E-10 9.3E-15 92.7 10.0 82 52-133 3-84 (115)
195 2l6j_A TPR repeat-containing p 99.1 5.2E-11 1.8E-15 96.3 5.5 94 33-126 3-102 (111)
196 2l6j_A TPR repeat-containing p 99.1 4E-10 1.4E-14 90.9 10.1 100 278-378 3-108 (111)
197 1na3_A Designed protein CTPR2; 99.1 1.2E-09 4E-14 84.4 11.5 77 70-146 11-87 (91)
198 1na3_A Designed protein CTPR2; 99.1 2E-09 7E-14 83.0 12.4 85 100-184 7-91 (91)
199 3ly7_A Transcriptional activat 99.0 1.4E-08 4.8E-13 97.4 17.6 74 130-204 271-344 (372)
200 3ma5_A Tetratricopeptide repea 99.0 1.8E-09 6.3E-14 84.9 9.4 72 132-203 3-74 (100)
201 2kc7_A BFR218_protein; tetratr 99.0 8.8E-10 3E-14 86.7 6.6 90 38-135 4-94 (99)
202 1klx_A Cysteine rich protein B 99.0 1.5E-08 5E-13 85.1 14.4 120 48-177 9-136 (138)
203 3ma5_A Tetratricopeptide repea 98.9 3.3E-09 1.1E-13 83.4 9.3 69 64-132 3-71 (100)
204 2kc7_A BFR218_protein; tetratr 98.9 2.5E-09 8.5E-14 84.1 6.9 67 73-139 5-72 (99)
205 3n71_A Histone lysine methyltr 98.9 9.7E-09 3.3E-13 105.3 13.1 128 37-164 312-463 (490)
206 3ly7_A Transcriptional activat 98.9 6.8E-08 2.3E-12 92.7 16.6 138 31-169 193-343 (372)
207 1klx_A Cysteine rich protein B 98.8 9.6E-08 3.3E-12 80.0 13.9 111 82-200 9-127 (138)
208 3u64_A Protein TP_0956; tetrat 98.8 2.4E-07 8.1E-12 84.9 16.0 174 51-235 49-269 (301)
209 3n71_A Histone lysine methyltr 98.7 1.5E-07 5.2E-12 96.4 15.8 132 213-344 316-465 (490)
210 4g26_A Pentatricopeptide repea 98.7 5.5E-07 1.9E-11 93.2 17.9 162 251-423 33-204 (501)
211 3bee_A Putative YFRE protein; 98.7 1.3E-07 4.5E-12 72.2 9.9 71 64-134 2-75 (93)
212 4g26_A Pentatricopeptide repea 98.6 4.6E-06 1.6E-10 86.3 22.9 163 142-308 32-204 (501)
213 3bee_A Putative YFRE protein; 98.6 4.9E-07 1.7E-11 69.0 11.2 73 132-204 2-77 (93)
214 1pc2_A Mitochondria fission pr 98.6 6.5E-07 2.2E-11 73.8 11.8 92 50-141 14-110 (152)
215 3u64_A Protein TP_0956; tetrat 98.6 2.1E-06 7.2E-11 78.7 16.2 178 86-276 50-272 (301)
216 1pc2_A Mitochondria fission pr 98.5 1.2E-06 4E-11 72.3 11.4 89 86-174 16-109 (152)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 2.4E-06 8.3E-11 67.2 11.2 76 34-109 5-87 (104)
218 3qww_A SET and MYND domain-con 98.4 2.4E-06 8.1E-11 86.1 13.2 84 47-130 311-410 (433)
219 2v5f_A Prolyl 4-hydroxylase su 98.4 3.6E-06 1.2E-10 66.2 11.2 76 68-143 5-87 (104)
220 3qwp_A SET and MYND domain-con 98.3 5.6E-06 1.9E-10 83.6 13.0 85 80-164 299-399 (429)
221 3qwp_A SET and MYND domain-con 98.2 1.7E-05 5.7E-10 80.1 13.5 109 146-254 297-423 (429)
222 3qww_A SET and MYND domain-con 98.2 8.4E-06 2.9E-10 82.1 11.2 94 80-173 310-424 (433)
223 1nzn_A CGI-135 protein, fissio 98.0 9.1E-05 3.1E-09 58.6 12.4 94 49-142 16-114 (126)
224 1nzn_A CGI-135 protein, fissio 97.9 0.00013 4.5E-09 57.7 10.6 87 87-173 20-111 (126)
225 3ffl_A Anaphase-promoting comp 97.9 7.7E-05 2.6E-09 61.7 9.5 134 34-180 20-165 (167)
226 4h7y_A Dual specificity protei 97.8 0.00056 1.9E-08 55.2 12.6 53 150-202 74-126 (161)
227 4h7y_A Dual specificity protei 97.6 0.0016 5.6E-08 52.5 13.2 105 166-275 9-125 (161)
228 3ffl_A Anaphase-promoting comp 97.6 0.00088 3E-08 55.5 11.8 64 172-235 22-92 (167)
229 1qsa_A Protein (soluble lytic 97.3 0.25 8.7E-06 51.8 33.9 190 213-423 221-410 (618)
230 3o48_A Mitochondria fission 1 97.2 0.0036 1.2E-07 49.6 10.6 73 67-139 39-115 (134)
231 1y8m_A FIS1; mitochondria, unk 97.2 0.0049 1.7E-07 49.5 11.1 75 67-141 38-116 (144)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.021 7.2E-07 45.9 13.4 81 99-179 36-120 (144)
233 3o48_A Mitochondria fission 1 97.0 0.014 4.8E-07 46.2 11.6 74 101-174 39-116 (134)
234 4b4t_P 26S proteasome regulato 96.8 0.17 5.9E-06 51.0 21.9 204 29-235 12-247 (445)
235 3txn_A 26S proteasome regulato 96.7 0.45 1.5E-05 46.6 22.8 98 175-272 104-209 (394)
236 3mkq_A Coatomer beta'-subunit; 96.5 0.3 1E-05 54.1 23.6 100 42-162 607-707 (814)
237 1qsa_A Protein (soluble lytic 96.5 1 3.5E-05 47.2 30.1 305 56-372 57-437 (618)
238 3mkq_A Coatomer beta'-subunit; 96.4 0.31 1.1E-05 54.0 22.6 99 77-196 608-707 (814)
239 3txn_A 26S proteasome regulato 96.3 0.89 3.1E-05 44.5 25.7 190 70-259 21-235 (394)
240 4gns_B Protein CSD3, chitin bi 96.3 0.029 9.9E-07 59.9 12.6 115 47-162 261-397 (754)
241 3mkq_B Coatomer subunit alpha; 96.2 0.23 7.9E-06 42.0 15.1 45 45-94 16-60 (177)
242 3kae_A CDC27, possible protein 96.1 0.47 1.6E-05 39.0 18.1 118 43-168 11-146 (242)
243 4ady_A RPN2, 26S proteasome re 96.0 1.6 5.6E-05 47.6 24.1 185 46-233 386-587 (963)
244 4ady_A RPN2, 26S proteasome re 95.9 0.84 2.9E-05 49.8 21.5 24 72-95 234-257 (963)
245 3spa_A Mtrpol, DNA-directed RN 95.9 0.051 1.7E-06 59.3 12.1 110 170-282 127-239 (1134)
246 3kae_A CDC27, possible protein 95.8 0.65 2.2E-05 38.2 22.7 56 103-163 34-89 (242)
247 4gns_B Protein CSD3, chitin bi 95.8 0.065 2.2E-06 57.2 12.2 115 81-196 261-397 (754)
248 3spa_A Mtrpol, DNA-directed RN 95.6 0.1 3.5E-06 57.0 12.7 98 246-343 129-230 (1134)
249 3mkq_B Coatomer subunit alpha; 95.6 0.49 1.7E-05 40.0 14.3 43 80-127 17-59 (177)
250 1zbp_A Hypothetical protein VP 95.5 0.41 1.4E-05 43.4 14.6 121 41-168 4-132 (273)
251 4b4t_P 26S proteasome regulato 95.4 2.6 8.8E-05 42.4 25.0 173 208-381 139-328 (445)
252 2ff4_A Probable regulatory pro 95.2 0.29 9.9E-06 48.4 14.2 60 139-198 174-233 (388)
253 1zbp_A Hypothetical protein VP 95.2 0.36 1.2E-05 43.7 13.0 59 112-170 7-65 (273)
254 2ff4_A Probable regulatory pro 95.1 0.24 8.3E-06 48.9 13.2 119 34-165 115-234 (388)
255 3lvg_A Clathrin heavy chain 1; 94.2 4.1E-06 1.4E-10 81.6 -22.5 275 100-416 52-326 (624)
256 4b4t_S RPN3, 26S proteasome re 94.1 0.41 1.4E-05 48.2 11.9 189 216-420 146-367 (523)
257 4b4t_S RPN3, 26S proteasome re 93.8 0.36 1.2E-05 48.6 10.8 136 32-169 132-303 (523)
258 4fhn_B Nucleoporin NUP120; pro 93.2 8.9 0.00031 44.0 22.6 197 141-343 817-1050(1139)
259 4fhn_B Nucleoporin NUP120; pro 93.2 2.9 9.9E-05 48.0 18.5 60 136-195 899-963 (1139)
260 1ya0_A SMG-7 transcript varian 92.6 0.57 2E-05 47.6 10.3 81 103-183 153-233 (497)
261 1ya0_A SMG-7 transcript varian 92.2 1 3.4E-05 45.8 11.5 80 69-148 153-232 (497)
262 4b4t_R RPN7, 26S proteasome re 92.2 0.78 2.7E-05 46.0 10.8 101 171-271 132-235 (429)
263 4b4t_R RPN7, 26S proteasome re 91.4 2 6.7E-05 43.1 12.7 100 208-308 133-237 (429)
264 2wpv_A GET4, UPF0363 protein Y 91.3 9.6 0.00033 35.8 16.6 23 402-424 196-218 (312)
265 3lpz_A GET4 (YOR164C homolog); 90.1 13 0.00044 35.2 29.2 139 31-193 9-159 (336)
266 3lpz_A GET4 (YOR164C homolog); 83.4 31 0.0011 32.6 25.3 168 39-235 40-216 (336)
267 2wpv_A GET4, UPF0363 protein Y 80.6 38 0.0013 31.7 28.5 49 31-93 10-58 (312)
268 4gq2_M Nucleoporin NUP120; bet 70.4 46 0.0016 37.2 13.7 46 137-182 898-948 (950)
269 2vkj_A TM1634; membrane protei 70.0 22 0.00076 25.3 6.8 46 33-78 52-100 (106)
270 1wy6_A Hypothetical protein ST 68.0 45 0.0015 26.6 15.9 41 32-72 5-45 (172)
271 4gq2_M Nucleoporin NUP120; bet 67.7 68 0.0023 35.8 14.4 128 74-219 816-949 (950)
272 3lvg_A Clathrin heavy chain 1; 65.7 0.0062 2.1E-07 59.8 -15.8 336 37-420 147-522 (624)
273 2ijq_A Hypothetical protein; s 62.9 38 0.0013 27.9 8.3 65 32-96 30-103 (161)
274 2qx5_A Nucleoporin NIC96; mRNA 59.1 1.8E+02 0.0062 30.6 15.7 95 54-162 281-382 (661)
275 3ax2_A Mitochondrial import re 57.1 27 0.00092 24.3 5.4 24 75-98 24-47 (73)
276 2w2u_A Hypothetical P60 katani 55.7 54 0.0018 23.5 7.3 30 33-62 18-47 (83)
277 3ax2_A Mitochondrial import re 54.4 48 0.0016 23.0 6.3 34 37-70 20-53 (73)
278 2rpa_A Katanin P60 ATPase-cont 53.5 18 0.00063 25.5 4.2 31 33-63 11-41 (78)
279 4a5x_A MITD1, MIT domain-conta 52.3 16 0.00055 26.4 3.9 31 33-63 15-45 (86)
280 2v6y_A AAA family ATPase, P60 48.5 71 0.0024 22.8 7.3 30 33-62 10-39 (83)
281 3bu8_A Telomeric repeat-bindin 48.4 56 0.0019 28.2 7.0 48 574-621 115-162 (235)
282 1wfd_A Hypothetical protein 15 48.1 27 0.00094 25.7 4.7 33 30-62 11-43 (93)
283 4a1g_A Mitotic checkpoint seri 46.1 1.2E+02 0.0041 24.7 11.7 137 219-361 3-148 (152)
284 2cwy_A Hypothetical protein TT 45.1 70 0.0024 23.5 6.5 57 38-96 5-67 (94)
285 1wy6_A Hypothetical protein ST 44.7 1.2E+02 0.0041 24.3 14.3 56 287-343 99-154 (172)
286 2npm_A 14-3-3 domain containin 44.6 1.8E+02 0.0061 26.2 13.6 189 7-198 1-226 (260)
287 3t5v_B Nuclear mRNA export pro 43.8 49 0.0017 33.0 7.2 89 151-239 141-254 (455)
288 2cfu_A SDSA1; SDS-hydrolase, l 43.4 37 0.0013 36.0 6.6 47 36-82 451-497 (658)
289 2v6y_A AAA family ATPase, P60 43.1 26 0.00087 25.2 3.7 16 114-129 23-38 (83)
290 3mv2_A Coatomer subunit alpha; 43.0 2.1E+02 0.0073 26.7 12.5 31 33-63 113-143 (325)
291 3t5x_A PCI domain-containing p 41.8 56 0.0019 28.3 6.5 34 314-347 14-47 (203)
292 2v6x_A Vacuolar protein sortin 40.4 48 0.0016 23.8 4.9 31 32-62 11-41 (85)
293 3t5v_B Nuclear mRNA export pro 40.4 81 0.0028 31.4 8.1 65 283-347 180-254 (455)
294 3t5x_A PCI domain-containing p 39.9 65 0.0022 27.9 6.6 31 138-168 16-46 (203)
295 2ynq_A ESSB; membrane protein, 39.3 1.6E+02 0.0054 24.1 8.1 86 35-128 9-99 (161)
296 2crb_A Nuclear receptor bindin 39.3 37 0.0013 24.6 3.9 25 38-62 19-43 (97)
297 2ijq_A Hypothetical protein; s 35.8 1.8E+02 0.0063 23.9 8.8 60 71-130 35-103 (161)
298 2crb_A Nuclear receptor bindin 35.5 68 0.0023 23.3 4.7 26 316-341 17-42 (97)
299 1om2_A Protein (mitochondrial 34.7 76 0.0026 23.3 5.1 29 38-66 24-52 (95)
300 1om2_A Protein (mitochondrial 34.3 44 0.0015 24.6 3.8 29 72-100 24-52 (95)
301 2wvi_A Mitotic checkpoint seri 33.4 2E+02 0.007 23.7 11.4 47 189-235 79-125 (164)
302 2cpt_A SKD1 protein, vacuolar 33.2 59 0.002 25.1 4.6 30 33-62 17-46 (117)
303 2qx5_A Nucleoporin NIC96; mRNA 28.1 5.5E+02 0.019 27.0 16.1 24 37-60 155-178 (661)
304 2rpa_A Katanin P60 ATPase-cont 27.2 58 0.002 22.9 3.3 27 317-343 15-41 (78)
305 2w2u_A Hypothetical P60 katani 25.0 1.2E+02 0.0041 21.6 4.7 19 324-342 29-47 (83)
306 1o9d_A 14-3-3-like protein C; 24.8 3.8E+02 0.013 24.1 16.6 169 105-273 11-207 (260)
307 2br9_A 14-3-3E, 14-3-3 protein 24.6 3.6E+02 0.012 23.8 15.1 46 34-79 5-51 (234)
308 2g0u_A Type III secretion syst 23.1 51 0.0018 23.9 2.4 25 658-682 29-53 (92)
309 3uzd_A 14-3-3 protein gamma; s 23.1 4E+02 0.014 23.7 15.1 161 35-198 5-202 (248)
310 2cfu_A SDSA1; SDS-hydrolase, l 22.8 1.3E+02 0.0046 31.7 6.7 51 314-364 449-499 (658)
311 2e2a_A Protein (enzyme IIA); h 22.8 1.2E+02 0.004 22.9 4.5 30 33-62 19-48 (105)
312 1wcr_A PTS system, N, N'-diace 22.6 1.2E+02 0.0041 22.7 4.5 30 33-62 17-46 (103)
313 3bu8_A Telomeric repeat-bindin 22.1 3.9E+02 0.013 23.2 8.3 65 118-182 88-160 (235)
314 2ynq_A ESSB; membrane protein, 21.4 3.4E+02 0.012 22.2 7.7 11 258-268 87-97 (161)
315 4a5x_A MITD1, MIT domain-conta 20.6 1.6E+02 0.0056 21.1 4.7 21 322-342 24-44 (86)
316 2br9_A 14-3-3E, 14-3-3 protein 20.4 4.5E+02 0.015 23.2 16.5 17 326-342 185-201 (234)
317 3k1s_A PTS system, cellobiose- 20.3 1.4E+02 0.0048 22.6 4.5 30 33-62 21-50 (109)
318 4b4t_O 26S proteasome regulato 20.1 5.9E+02 0.02 24.5 11.5 96 212-307 82-197 (393)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-41 Score=346.64 Aligned_cols=368 Identities=18% Similarity=0.141 Sum_probs=354.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 117 (687)
+..|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|...+++++..+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
+++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632 198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277 (687)
Q Consensus 198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 277 (687)
..+|++.. ++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++...|.
T Consensus 163 ~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 163 ETQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 99999875 7899999999999999999999999999 7888999999999999999999999999999999885
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 357 (687)
++.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++..|+++.++..++.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 8899999999999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632 358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (687)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 425 (687)
+...|++++|+..++++++..|.+. .++..+|.++...|++++|++.++++++..+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFA------------AAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCH------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999988765 4899999999999999999999999986543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-40 Score=359.64 Aligned_cols=459 Identities=14% Similarity=0.064 Sum_probs=404.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
+++..+...+..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 466677888999999999999999999999999954 77889999999999999999999998765 6778999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAE----------------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
|...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|+++.++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999999632222 2237899999999999999999999999999999999988777
Q ss_pred HHH--------------------------------------HHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 005632 176 GAQ--------------------------------------LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217 (687)
Q Consensus 176 la~--------------------------------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~ 217 (687)
++. .|...|++++|+..++++++. |.+. .++..++.++.
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~l~~~~~ 316 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS--DLLLCKADTLF 316 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH--HHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH--HHHHHHHHHHH
Confidence 654 334678899999999998877 4443 47889999999
Q ss_pred HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHH
Q 005632 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS 297 (687)
Q Consensus 218 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 297 (687)
..|++++|+..|++++.. .|....++..++.++...|++++|+..+++++...|. +...+..+|.++...|++++
T Consensus 317 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHH
Confidence 999999999999999988 6667788899999999999999999999999887774 88999999999999999999
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632 298 ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377 (687)
Q Consensus 298 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 377 (687)
|+..|++++.. .|.+..+|..++.++...|++++|+..|+++++..|++..++..++.++...|++++|+++|+++++.
T Consensus 392 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999987 78899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCC
Q 005632 378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPT 457 (687)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (687)
.|.++ .++..+|.+|...|++++|++.|.++++..++.
T Consensus 471 ~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------ 508 (597)
T 2xpi_A 471 FQYDP------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------------------------ 508 (597)
T ss_dssp CCCCH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------------------------
T ss_pred CCCCh------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------------------------
Confidence 88765 488999999999999999999999888664220
Q ss_pred CcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchh-hHHH
Q 005632 458 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEEN-QCLI 536 (687)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 536 (687)
...|+. ....
T Consensus 509 ---------------------------------------------------------------------~~~p~~~~~~~ 519 (597)
T 2xpi_A 509 ---------------------------------------------------------------------QSNEKPWAATW 519 (597)
T ss_dssp ---------------------------------------------------------------------CCCSGGGHHHH
T ss_pred ---------------------------------------------------------------------ccchhhHHHHH
Confidence 012332 4577
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632 537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (687)
Q Consensus 537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 616 (687)
..++.++...|++++|+.++++++...|. ....+..++.++...|++++|...++++++.+|+++.++..++.+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 78899999999999999999999998765 457788888999999999999999999999999999999988876
Q ss_pred HH
Q 005632 617 LS 618 (687)
Q Consensus 617 ~~ 618 (687)
+.
T Consensus 594 ~~ 595 (597)
T 2xpi_A 594 LE 595 (597)
T ss_dssp TC
T ss_pred Hh
Confidence 53
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.3e-40 Score=334.54 Aligned_cols=359 Identities=18% Similarity=0.173 Sum_probs=344.6
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.+...++..|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
..|++++..+|++.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..|+++
T Consensus 190 ~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLD--AYINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHCTTCHH--HHHHHHHHHHTTTCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999875 7899999999999999999999999999 7888899999999999999999999999999
Q ss_pred hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH
Q 005632 271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 350 (687)
Q Consensus 271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 350 (687)
+...|. .+.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++.+|++..+
T Consensus 264 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 998885 8899999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCC
Q 005632 351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM 409 (687)
Q Consensus 351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 409 (687)
+..+|.++...|++++|+..++++++..|... .+++.+|.++..+|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------------~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFA------------DAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------HHHHhHHHHHHHccC
Confidence 99999999999999999999999999988765 599999999988774
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-40 Score=361.08 Aligned_cols=484 Identities=13% Similarity=0.007 Sum_probs=396.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
.+...+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467789999999999999999999999999888854 67889999999999999999999998765 6789999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLF----------------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 209 (687)
|...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|.+.. ++
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE--AF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH--HH
Confidence 999999999999998632222 224789999999999999999999999999999998775 67
Q ss_pred HHHHHHHHHcchHHHHHHH---HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHH
Q 005632 210 DLLVAILMENNAYEKTLQH---IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVA 286 (687)
Q Consensus 210 ~~la~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la 286 (687)
..++.++...+..+.+... +.+.... +......++..++..+...|++++|+..|++++.. + .+...+..++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~ 312 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKE---DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E-KSSDLLLCKA 312 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGG---GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G-GCHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccc---hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C-chHHHHHHHH
Confidence 7777766655544433221 2222111 11122233444567777888889999999888766 3 4788888899
Q ss_pred HHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 005632 287 DTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE 366 (687)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 366 (687)
.++...|++++|+..|++++.. .|.+..++..++.++...|++++|...++++++..|++..++..++.++...|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999988876 677888888899999999999999999999998889888889899999999999999
Q ss_pred HHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhh
Q 005632 367 AITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQ 446 (687)
Q Consensus 367 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (687)
|+++|+++++..|.+. .++..++.+|...|++++|++.|+++++..
T Consensus 392 A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------- 437 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFG------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------------- 437 (597)
T ss_dssp HHHHHHHHHHHCTTCH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence 9999988888777654 478889999999999999988888776442
Q ss_pred hHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcc
Q 005632 447 QRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNL 526 (687)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (687)
T Consensus 438 -------------------------------------------------------------------------------- 437 (597)
T 2xpi_A 438 -------------------------------------------------------------------------------- 437 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhh----
Q 005632 527 LKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL---- 602 (687)
Q Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---- 602 (687)
|++......++.++...|++++|+.++++++...+. ....+...+.++...|++++|+.+++++++.
T Consensus 438 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 438 ---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp ---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 112234556778888889999999999988887665 3456667788888889999999999888887
Q ss_pred --CCCC-chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCCh
Q 005632 603 --HPYS-LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENP 679 (687)
Q Consensus 603 --~p~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p 679 (687)
+|++ ..+|..++.++...|+ +.+|...+.++....|++..++..+|.++...|++++|+..|+++++++|++|
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKM----YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccchhhHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 5554 5788999999999998 88999999999998999988999999999999999999999999999999999
Q ss_pred hhhhhcc
Q 005632 680 LINLKRL 686 (687)
Q Consensus 680 ~~~l~~~ 686 (687)
.+...++
T Consensus 585 ~~~~~l~ 591 (597)
T 2xpi_A 585 MASDLLK 591 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-36 Score=319.70 Aligned_cols=373 Identities=12% Similarity=0.063 Sum_probs=346.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---------------------------------------------------------
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKD--------------------------------------------------------- 135 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~--------------------------------------------------------- 135 (687)
...|++++|+..|++++...|.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999999887632
Q ss_pred ----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHH
Q 005632 136 ----------------------ISLRIHLASFYVE---IGDYEKAAESYEQIQK-----L--F-------PDNVDATKTG 176 (687)
Q Consensus 136 ----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~l 176 (687)
...+..+|.++.. .|++++|+..|+++++ . . |.++.++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 6667778888776 8999999999999999 5 4 4456789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
|.++...|++++|+..+++++...|. . .++..+|.++...|++++|+..+++++.. .+....++..+|.++..
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-V--NSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-H--HHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998 3 48999999999999999999999999988 67778899999999999
Q ss_pred cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 005632 257 LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336 (687)
Q Consensus 257 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 336 (687)
.|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999998875 8889999999999999999999999999987 788999999999999999999999999
Q ss_pred HHHHHHhcCCCHH------HHHHHHHHHHH---cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHc
Q 005632 337 FYKALDRFEDNID------ARLTLASLLLE---EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAK 407 (687)
Q Consensus 337 ~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 407 (687)
|+++++..|+++. ++..+|.++.. .|++++|+..+++++...|.+. .++..+|.+|...
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~ 462 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE------------QAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHT
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH------------HHHHHHHHHHHHh
Confidence 9999999998855 99999999999 9999999999999999888765 4899999999999
Q ss_pred CCchHHHHHHHHHHHHhhhh
Q 005632 408 GMPEDFVDAIFPLVCESLCV 427 (687)
Q Consensus 408 g~~~~A~~~~~~~~~~~~~~ 427 (687)
|++++|++.+.++++..++.
T Consensus 463 g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 463 EDIDEAITLFEESADLARTM 482 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSSH
T ss_pred cCHHHHHHHHHHHHHhcccc
Confidence 99999999999999877654
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.5e-34 Score=302.45 Aligned_cols=375 Identities=16% Similarity=0.119 Sum_probs=322.2
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
.-|.++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRIHL------------ASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
|.++...|++++|+..|++++..+|++. .++..+ |.++...|++++|+..|+++++..|.++.++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999988 776555 6669999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH---
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA--- 250 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l--- 250 (687)
..+|.++...|++++|+..|++++..+|.+.. ++..+|.++...|++++|+..+++++.. .|.....+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHH
Confidence 99999999999999999999999999998875 7999999999999999999999999998 55555555444
Q ss_pred ---------HHHHHHcCCHHHHHHHHHHHhhhCchhh---HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHH
Q 005632 251 ---------GICYLRLGNMEKAEILFADLQWKNAIDH---ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL 318 (687)
Q Consensus 251 ---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 318 (687)
|.++...|++++|+..|++++...|... ...+..+|.++...|++++|+..+++++.. .|+++.++.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~ 333 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHH
Confidence 9999999999999999999998877521 457889999999999999999999999987 799999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------------cC-----CHHHHHHhcCC-CCcCCcc
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE------------EA-----KEEEAITLLSP-PKDLDSL 380 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g-----~~~~A~~~~~~-a~~~~~~ 380 (687)
.+|.++...|++++|+..|+++++++|+++.++..++.+... .| +.+++.+.|.+ ++...|+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999965443 33 34455555554 4555554
Q ss_pred cCCCCCCCh-hhhhHHHHHHHHHHHHHcCCchHH
Q 005632 381 DMNSDKSNP-WWLNEKIIMKLCHIYRAKGMPEDF 413 (687)
Q Consensus 381 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A 413 (687)
... ... --.....+..++.+|..+|+.+++
T Consensus 414 ~~~---~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQ---NEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCC---SHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCC---CchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 431 000 000123455566666666655543
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.2e-35 Score=314.14 Aligned_cols=451 Identities=14% Similarity=0.103 Sum_probs=358.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA---TKTGAQLFLKCGQTARS 189 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A 189 (687)
...|++++|+..|+ ++..+|+....+. ..+...+...+|+..+++++...|..... .......+....+.+.+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999995 8888887665542 34555666788999999998876543311 11223334556666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHH--------HHHcchHHHHHHHHHHHHHHhccCCCch-------HHHHHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAI--------LMENNAYEKTLQHIEHAQIVRFSGKELP-------LKLKVKAGICY 254 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 254 (687)
...+.+.....+.... ....++.+ ....|++++|+..+++++.. .|.. ..++..+|.++
T Consensus 180 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYAL--LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHTSCCCCSSCSSHHH--HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHH
Confidence 6555443333332211 22233333 33346899999999999987 3333 34688889999
Q ss_pred HHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHH
Q 005632 255 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI 334 (687)
Q Consensus 255 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 334 (687)
...|++++|+..+++++...|. ...+..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999998874 889999999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHH
Q 005632 335 MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFV 414 (687)
Q Consensus 335 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 414 (687)
..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.++ .++..+|.++...|++++|+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------------EVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999998876 48999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005632 415 DAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKK 494 (687)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (687)
+.+.++++..+....
T Consensus 399 ~~~~~a~~~~~~~~~----------------------------------------------------------------- 413 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEK----------------------------------------------------------------- 413 (537)
T ss_dssp HHHHHHHHHHHHCSS-----------------------------------------------------------------
T ss_pred HHHHHHHHcCCcchh-----------------------------------------------------------------
Confidence 999999876532100
Q ss_pred HHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhh
Q 005632 495 ALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASL----------QRYEEASEIINLSMRLAY 564 (687)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~eA~~~l~~al~~~~ 564 (687)
.......+...+.++... |++++|+..+++++...|
T Consensus 414 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 414 ----------------------------------IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp ----------------------------------CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred ----------------------------------hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 000111234566777777 999999999999999877
Q ss_pred ccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHH
Q 005632 565 NILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCY 613 (687)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 613 (687)
. ...+.+..+.++...|++++|+..++++++..|++.......
T Consensus 460 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 460 R------SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred C------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 6 447778889999999999999999999999999998876544
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=284.15 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=299.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
++..++..|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEP---KDISLRIHL------------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 177 (687)
...|++++|+..|++++..+| +++.++..+ |.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 79999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH----------
Q 005632 178 QLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK---------- 247 (687)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---------- 247 (687)
.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|+..+++++.. .|....++
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 7899999999999999999999999998 44444332
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH----HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632 248 --VKAGICYLRLGNMEKAEILFADLQWKNAIDHA----DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 321 (687)
Q Consensus 248 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la 321 (687)
..+|.++...|++++|+..+++++...|. ++ ..+..+|.++...|++++|+..+++++.. .|+++.++..+|
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHH
Confidence 34588899999999999999999988775 33 44667999999999999999999999987 899999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 005632 322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363 (687)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 363 (687)
.++...|++++|+..|+++++.+|++..++..++.+....++
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.1e-35 Score=316.43 Aligned_cols=450 Identities=12% Similarity=0.053 Sum_probs=348.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcchHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKT 225 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~la~~~~~~~~~~~A 225 (687)
...|++++|+..|+ ++...|+....+. ..+...+...+|+..+++++...|...... ........+....+.+.+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999995 8888887665442 345556667889999999988765432100 011233345556666665
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHH--------HHHHHcCCHHHHHHHHHHHhhhCchh------hHHHHHHHHHHHHh
Q 005632 226 LQHIEHAQIVRFSGKELPLKLKVKAG--------ICYLRLGNMEKAEILFADLQWKNAID------HADLITEVADTLMS 291 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~ 291 (687)
...+.+.... .+........++ ......|++++|+..+++++...|.+ ...++..+|.++..
T Consensus 180 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNY----DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSS----CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccc----ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 5554433222 333222333333 23334568999999999999887752 13468888999999
Q ss_pred cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 005632 292 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371 (687)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 371 (687)
.|++++|+..+++++.. .|. +.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus 256 ~~~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL-HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc-CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999987 677 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhh
Q 005632 372 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKI 451 (687)
Q Consensus 372 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (687)
++++...|.+. .++..+|.++...|++++|++.+.++++..
T Consensus 334 ~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------------- 374 (537)
T 3fp2_A 334 QKAQSLNPENV------------YPYIQLACLLYKQGKFTESEAFFNETKLKF--------------------------- 374 (537)
T ss_dssp HHHHHHCTTCS------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence 99999998876 489999999999999999999998887553
Q ss_pred ccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcch
Q 005632 452 YNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEE 531 (687)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (687)
|+
T Consensus 375 ------------------------------------------------------------------------------~~ 376 (537)
T 3fp2_A 375 ------------------------------------------------------------------------------PT 376 (537)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ------------------------------------------------------------------------------CC
Confidence 22
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhccc----------CCCcchhHHHHHHHh
Q 005632 532 NQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDS----------TDPNHGFDCAKYILQ 601 (687)
Q Consensus 532 ~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~A~~~~~~~l~ 601 (687)
...+...++.++...|++++|+..+++++...+........-...+..+.++... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 2345667789999999999999999999998876422111112233344556666 999999999999999
Q ss_pred hCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc
Q 005632 602 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP 647 (687)
Q Consensus 602 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 647 (687)
.+|++..++..++.++...|+ +.+|...+.+++...|+....
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEK----IDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC--CHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999998 778888888888887776544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=304.21 Aligned_cols=427 Identities=14% Similarity=0.050 Sum_probs=358.1
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH---------------------------
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ---TARSIGILEEY--------------------------- 196 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~--------------------------- 196 (687)
...|++++|+..|++++...|.+................ ..+++..++.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999998665433322222222111 11111111100
Q ss_pred ----HHh---C--------CCCCcHHHHHHHHHHHHH---cchHHHHHHHHHHHHHHh-------ccC---CCchHHHHH
Q 005632 197 ----LKV---H--------PSDADLSVIDLLVAILME---NNAYEKTLQHIEHAQIVR-------FSG---KELPLKLKV 248 (687)
Q Consensus 197 ----~~~---~--------p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~ 248 (687)
+.. . |++ ..++..+|.++.. .|++++|+..+++++..+ +.+ .+....++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNE--ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCH--HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcH--HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 000 0 111 3467788888876 899999999999999831 211 155678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh
Q 005632 249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK 328 (687)
Q Consensus 249 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 328 (687)
.+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998885 899999999999999999999999999987 7889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG 408 (687)
Q Consensus 329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 408 (687)
++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.++ .++..+|.++...|
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP------------EVPNFFAEILTDKN 386 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS------------HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH------------HHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999888776 48999999999999
Q ss_pred CchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHH
Q 005632 409 MPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEA 488 (687)
Q Consensus 409 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (687)
++++|+..+.++++..+..
T Consensus 387 ~~~~A~~~~~~a~~~~~~~------------------------------------------------------------- 405 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKL------------------------------------------------------------- 405 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTS-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHhhhcc-------------------------------------------------------------
Confidence 9999999999988664221
Q ss_pred HHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhc
Q 005632 489 LKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALAS---LQRYEEASEIINLSMRLAYN 565 (687)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~eA~~~l~~al~~~~~ 565 (687)
+ ...........++.++.. .|++++|+..+++++...+.
T Consensus 406 -----------------~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 406 -----------------D---------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp -----------------S---------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred -----------------c---------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 0 000112356688899999 99999999999999998766
Q ss_pred cCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632 566 ILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV 616 (687)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 616 (687)
.....+..+.++...|++++|+..++++++.+|+++.++..+...
T Consensus 448 ------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 448 ------SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 456777888999999999999999999999999999998777544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=7e-34 Score=297.31 Aligned_cols=336 Identities=17% Similarity=0.158 Sum_probs=298.0
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 128 (687)
....+...+.+++..+|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCChHHHHHHH
Q 005632 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTG------------AQLFLKCGQTARSIGIL 193 (687)
Q Consensus 129 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~ 193 (687)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999988 776655 66699999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 273 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 273 (687)
++++...|.+.. ++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 167 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 167 DKILEVCVWDAE--LRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHCTTCHH--HHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998875 7889999999999999999999999998 6777899999999999999999999999999988
Q ss_pred CchhhHHHHHHH------------HHHHHhcCChHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhhcHHHHHHHH
Q 005632 274 NAIDHADLITEV------------ADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERAHAIMFF 337 (687)
Q Consensus 274 ~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~ 337 (687)
.|. ....+..+ |.++...|++++|+..|++++.. .|.++ ..+..+|.++...|++++|+..+
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 775 55555544 99999999999999999999987 67764 47889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632 338 YKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY 404 (687)
Q Consensus 338 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 404 (687)
+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++ .++..++.+.
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~ 373 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ------------QIREGLEKAQ 373 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH------------HHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 4777787543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.2e-32 Score=278.62 Aligned_cols=322 Identities=18% Similarity=0.175 Sum_probs=296.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
+++.++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFP---DNVDATKTG------------AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 211 (687)
...|++++|+..|+++++..| +++.++..+ |.++...|++++|+..++++++..|.+.. ++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE--LREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH--HHHH
Confidence 999999999999999999999 888888777 79999999999999999999999998875 7899
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHH---------
Q 005632 212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI--------- 282 (687)
Q Consensus 212 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------- 282 (687)
+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++...|. ....+
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 999999999999999999999998 7888899999999999999999999999999988775 44433
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 283 ---TEVADTLMSLGHSNSALKYYHFLETNAGTDNGY----LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 283 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
..+|.++...|++++|+..+++++.. .|.++. ++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34588899999999999999999987 677663 4667999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG 408 (687)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 408 (687)
.++...|++++|+..++++++.+|.+. .+...++.++...+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~------------~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQ------------QIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999865 36777777765443
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-31 Score=262.11 Aligned_cols=303 Identities=14% Similarity=0.091 Sum_probs=216.0
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
.+.+...++..|..++..|++++|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|+++.++..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 34444556666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 110 TFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 110 ~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 7777777 777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA 268 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 268 (687)
|+..+++++...|.+.. ++..+|.++...|++++|+..+++++...+....
T Consensus 178 A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 228 (330)
T 3hym_B 178 AERFFSQALSIAPEDPF--VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------- 228 (330)
T ss_dssp HHHHHHHHHTTCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred HHHHHHHHHHhCCCChH--HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence 77777777777776653 5667777777777777777777777665321100
Q ss_pred HHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632 269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 348 (687)
...++..+.++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+.+|+++++.+|+++
T Consensus 229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 0001234567777777777788888888888877766 677778888888888888888888888888888888888
Q ss_pred HHHHHHHHHH-HHcCCHH
Q 005632 349 DARLTLASLL-LEEAKEE 365 (687)
Q Consensus 349 ~~~~~la~~~-~~~g~~~ 365 (687)
.++..++.++ ...|+.+
T Consensus 305 ~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHhCchh
Confidence 8888888877 4455543
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-30 Score=271.43 Aligned_cols=359 Identities=14% Similarity=0.069 Sum_probs=288.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--------
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRL---------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------- 98 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 98 (687)
.+-.+|.++...|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++.+.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3445799999999999999999999886 56677889999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 99 PKDSALWKQLLTFAVQK--GDTAQAMYYIRQAIRAEPKDISLRIHLASFYV---EIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++. ..++.++|++.|+++++++|+++.++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 35678888888777654 57999999999999999999999999988855 45778899999999999999999999
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 005632 174 KTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK 249 (687)
Q Consensus 174 ~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 249 (687)
..+|..+.. .|++++|+..+++++..+|.... ++..+|.++...|++++|+..++++++. .|....++..
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~ 286 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD--VLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH--HHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHHH
Confidence 888877655 46789999999999999999876 7889999999999999999999999999 8888899999
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632 250 AGICYLRL-------------------GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310 (687)
Q Consensus 250 l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 310 (687)
+|.+|... +.+++|+..+++++...|. ....+..+|.++...|++++|+.+|++++.. .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK-E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 99887643 3467888899998888875 8888999999999999999999999999977 4
Q ss_pred CCcH---HHHHHHHHH-HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCC
Q 005632 311 TDNG---YLYLKLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDK 386 (687)
Q Consensus 311 ~~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 386 (687)
+++. .++..+|.+ +...|++++|+..|++++++.|++......+ ..+.+++++++..+|.++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p~~~~--- 431 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNGADSE--- 431 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC-CTT---
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCCCCHH---
Confidence 4433 345666654 4578899999999999999999886543332 2334455566667787764
Q ss_pred CChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 387 SNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 387 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
++..+|.+|...|++++|++.|++.++..
T Consensus 432 ---------~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 432 ---------ALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-------------
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999998754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=3.2e-30 Score=257.45 Aligned_cols=257 Identities=13% Similarity=0.069 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
+...+...+.+++..|++++|+..++++++.+|+++.+++.+|.++...| ++++|+.+|++++..+|.++.++..+|.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 33445567888999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (687)
+...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCC-------cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632 192 ILEEYLKVHPSDA-------DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 264 (687)
Q Consensus 192 ~~~~~~~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 264 (687)
.+++++...|... ...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHhccHHHHH
Confidence 9999999874311 1237788888888888888888888888887 5666667777777777777777777
Q ss_pred HHHHHHhhhCchhhHHHHHHHHHHH-HhcCC
Q 005632 265 ILFADLQWKNAIDHADLITEVADTL-MSLGH 294 (687)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~ 294 (687)
..+++++...|. ++.++..++.++ ...|+
T Consensus 291 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 291 DYFHTALGLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence 777777766663 666677777666 34443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.98 E-value=2.9e-30 Score=262.07 Aligned_cols=316 Identities=16% Similarity=0.115 Sum_probs=251.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHH-HHHHHhccCCCCH----HHHHHHHHHHHHcCCHHH
Q 005632 46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFD-FYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 120 (687)
..+.++.+...++.+....|. ++...|++++|+. .|.+++...|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 334455555555555444442 4556688888888 8888888877664 457888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...
T Consensus 83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcHHHH--------------HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHcCCHHHHH
Q 005632 201 PSDADLSVI--------------DLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLKVKAGICYLRLGNMEKAE 264 (687)
Q Consensus 201 p~~~~~~~~--------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~ 264 (687)
|.+...... ..++.++ ..|++++|+..+++++.. .|. ...++..+|.++...|++++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 877652111 1466666 899999999999999999 565 7888999999999999999999
Q ss_pred HHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632 265 ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (687)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (687)
..+++++...|. .+.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++..
T Consensus 238 ~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999998875 8899999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred CCC-----------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632 345 EDN-----------IDARLTLASLLLEEAKEEEAITLLSPPKDLD 378 (687)
Q Consensus 345 p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 378 (687)
|++ ..++..++.++...|++++|..++.++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 988 8999999999999999999999999877643
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=269.17 Aligned_cols=359 Identities=14% Similarity=0.063 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHHh----C--CCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------
Q 005632 34 VTKMLGEASLQY--AYGNFEQAISLLKEVVRL----S--PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL-------- 97 (687)
Q Consensus 34 ~~~~~~~a~~~~--~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 97 (687)
....+.+-.++| ..++.+.++..+++.+.. . +..+..+..+|.++..+|++++|+++|++++++
T Consensus 9 l~~~l~~l~chf~w~l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~ 88 (472)
T 4g1t_A 9 LESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ 88 (472)
T ss_dssp HHHHHHTSCSTTTSCTTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhhChHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc
Confidence 333444434443 344555666666655543 2 224567889999999999999999999999876
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC
Q 005632 98 -SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEI--GDYEKAAESYEQIQKLF 166 (687)
Q Consensus 98 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~ 166 (687)
+|.....|.++|.+|..+|++++|+.++++++.+. +..+.++..+|.++... +++++|+.+|+++++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 56677889999999999999999999999998853 45678888888877665 57999999999999999
Q ss_pred CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHhccC
Q 005632 167 PDNVDATKTGAQLFLK---CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM----ENNAYEKTLQHIEHAQIVRFSG 239 (687)
Q Consensus 167 p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~ 239 (687)
|+++.++..++.++.. .++.++|+..++++++++|++.. ++..+|..+. ..+++++|+..+++++..
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~--~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---- 242 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY--LKVLLALKLHKMREEGEEEGEGEKLVEEALEK---- 242 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH--HHHHHHHHHHHCC------CHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----
Confidence 9999999999888654 57789999999999999999875 5666665554 457788999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHH
Q 005632 240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLK 319 (687)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 319 (687)
.|....++..+|.++...|++++|+..+++++...|. ++.++..+|.+|...+....+. ....
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~----------------~~~~ 305 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNL----------------RENG 305 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhH----------------HHHH
Confidence 8888899999999999999999999999999998885 8889999998876432221111 1112
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHH
Q 005632 320 LAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMK 399 (687)
Q Consensus 320 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (687)
.+......+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++..+.+.. ...+++.
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~---------~~~~~~~ 376 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA---------KQLLHLR 376 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH---------HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH---------HHHHHHH
Confidence 2233344556788999999999999999999999999999999999999999998887765431 1235566
Q ss_pred HHHH-HHHcCCchHHHHHHHHHHHHh
Q 005632 400 LCHI-YRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 400 la~~-~~~~g~~~~A~~~~~~~~~~~ 424 (687)
+|.+ +...|++++|+..|.+.++..
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6654 357788889988888877543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=9.7e-27 Score=245.09 Aligned_cols=352 Identities=16% Similarity=0.098 Sum_probs=316.4
Q ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHH
Q 005632 33 GVTKMLGEASLQYA----YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSAL 104 (687)
Q Consensus 33 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 104 (687)
++...+..|..++. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 56777888999998 89999999999999986 678999999999999 99999999999999875 57899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 105 WKQLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 105 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~L 189 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 9999999999 89999999999999875 589999999999998 89999999999999986 589999999
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHH
Q 005632 177 AQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKV 248 (687)
Q Consensus 177 a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 248 (687)
|.+|.. .+++++|+.+|+++.+.. ++ .++..+|.++.. .+++++|+.+|+++... ....+++
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~--~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~ 259 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG--DE--LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------GNSIAQF 259 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------TCHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHH
Confidence 999998 899999999999998864 22 378899999997 89999999999999854 3567889
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhccCCCcHHHHHH
Q 005632 249 KAGICYLR----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSL-----GHSNSALKYYHFLETNAGTDNGYLYLK 319 (687)
Q Consensus 249 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 319 (687)
.+|.++.. .+++++|+.+|+++... .++.++..+|.++... +++++|+.+|+++.+. .++.+++.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---GDATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---CCHHHHHH
Confidence 99999999 89999999999999765 3677899999999998 9999999999999864 56789999
Q ss_pred HHHHHHHhh---cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCcCCcccCCCCCCChhhh
Q 005632 320 LAECYLSLK---ERAHAIMFFYKALDRFEDNIDARLTLASLLLE----EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWL 392 (687)
Q Consensus 320 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 392 (687)
+|.+|...| ++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++.+...
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------------- 398 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL------------- 398 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-------------
Confidence 999999865 899999999999987 679999999999999 8999999999999887542
Q ss_pred hHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHh
Q 005632 393 NEKIIMKLCHIYRA----KGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 393 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 424 (687)
+.+++.+|.+|.. .+++++|+.+|++.++..
T Consensus 399 -~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 399 -SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 2589999999998 899999999999998775
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.8e-29 Score=256.28 Aligned_cols=295 Identities=14% Similarity=0.096 Sum_probs=262.5
Q ss_pred HHHhcCCHHHHHH-HHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632 43 LQYAYGNFEQAIS-LLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117 (687)
Q Consensus 43 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 117 (687)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 6667899999999 9999999888764 5699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----------------TGAQLFL 181 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------------~la~~~~ 181 (687)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999998876654 466666
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261 (687)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (687)
..|++++|+..+++++...|......++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999544458899999999999999999999999999 7778899999999999999999
Q ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc-----------HHHHHHHHHHHHHhhcH
Q 005632 262 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN-----------GYLYLKLAECYLSLKER 330 (687)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~ 330 (687)
+|+..+++++...|. .+.++..+|.++...|++++|+..|++++.. .|.+ +.++..+|.++..+|++
T Consensus 269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999998875 8899999999999999999999999999877 4554 89999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 005632 331 AHAIMFFYKALDRF 344 (687)
Q Consensus 331 ~~A~~~~~~al~~~ 344 (687)
++|..+++++++..
T Consensus 347 ~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 347 DAYGAADARDLSTL 360 (368)
T ss_dssp GGHHHHHTTCHHHH
T ss_pred HhHHHhHHHHHHHH
Confidence 99999998877653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.3e-28 Score=247.62 Aligned_cols=285 Identities=14% Similarity=0.060 Sum_probs=237.2
Q ss_pred HHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 89 DFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 89 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
..+.+.+...+.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555555444 34888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--------HHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--------SVIDLLVAILMENNAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 236 (687)
.+|+++.++..+|.++...|++++|+..++++++..|++... ..+..+|.++...|++++|+..+++++..
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 206 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ- 206 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence 888888888888888888888888888888888888765442 12334589999999999999999999999
Q ss_pred ccCCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH
Q 005632 237 FSGKEL--PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG 314 (687)
Q Consensus 237 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 314 (687)
.|. ...++..+|.++...|++++|+..+++++...|. ++.++..+|.++...|++++|+..|++++.. .|+++
T Consensus 207 ---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~ 281 (365)
T 4eqf_A 207 ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFI 281 (365)
T ss_dssp ---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred ---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Confidence 565 7788999999999999999999999999998885 8899999999999999999999999999988 89999
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632 315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED------------NIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 379 (687)
.++..+|.++...|++++|+..|++++++.|+ +..++..++.++...|+.+.+..+..+.++...
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999987 357889999999999999999999988665443
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4e-26 Score=240.41 Aligned_cols=332 Identities=12% Similarity=0.066 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632 52 QAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMY 123 (687)
Q Consensus 52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 123 (687)
.++..++++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34566665544 5789999999999999 89999999999999876 678999999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 005632 124 YIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEE 195 (687)
Q Consensus 124 ~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 195 (687)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|++
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999875 588999999999999 89999999999999875 689999999999998 8899999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005632 196 YLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILF 267 (687)
Q Consensus 196 ~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 267 (687)
+.+.. ++ .++..+|.+|.. .+++++|+.+|+++.+. .+..+++.+|.++.. .+++++|+.+|
T Consensus 177 a~~~~--~~--~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 177 AAEQG--NV--WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHTT--CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHCC--CH--HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98863 33 478999999998 89999999999999865 346788999999997 89999999999
Q ss_pred HHHhhhCchhhHHHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh-----hcHHHHHHHHH
Q 005632 268 ADLQWKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-----KERAHAIMFFY 338 (687)
Q Consensus 268 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 338 (687)
+++... .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+
T Consensus 247 ~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 999875 366789999999998 89999999999998844 6788999999999998 89999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH----cCCch
Q 005632 339 KALDRFEDNIDARLTLASLLLEEA---KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA----KGMPE 411 (687)
Q Consensus 339 ~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 411 (687)
++++. +++.+++.+|.++...| ++++|+.+|+++.+... +.+++.+|.+|.. .++++
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--------------KAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHcCCCCCCCHH
Confidence 99886 56889999999999877 89999999999987632 2589999999999 89999
Q ss_pred HHHHHHHHHHHH
Q 005632 412 DFVDAIFPLVCE 423 (687)
Q Consensus 412 ~A~~~~~~~~~~ 423 (687)
+|+++|++.++.
T Consensus 385 ~A~~~~~~A~~~ 396 (490)
T 2xm6_A 385 QAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999998887643
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=5e-28 Score=245.17 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 44888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTG----------AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~ 218 (687)
.|++++|+..|+++++..|++..++..+ |.++...|++++|+..+++++...|......++..+|.++..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 8888888888888888877765555444 778888888888888888888888874444477788888888
Q ss_pred cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632 219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA 298 (687)
Q Consensus 219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 298 (687)
.|++++|+..+++++.. .|....++..+|.++...|++++|+..|++++...|. .+.++..+|.++...|++++|
T Consensus 226 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887 6667778888888888888888888888888877774 678888888888888888888
Q ss_pred HHHHHHhhhccCCC------------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632 299 LKYYHFLETNAGTD------------NGYLYLKLAECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 299 ~~~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 342 (687)
+..|++++.. .|. ...+|..++.++..+|+.+.+.....+.+.
T Consensus 301 ~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 301 VSNFLTALSL-QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHH-HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHh-CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 8888887765 222 367888899999999998888877766443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=7.3e-26 Score=240.95 Aligned_cols=351 Identities=9% Similarity=-0.003 Sum_probs=229.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (687)
Q Consensus 57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 136 (687)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.+...|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678889999999999999984 7889999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHh
Q 005632 137 SLRIHLASF-YVEIGDYEKAAE----SYEQIQKL---FPDNVDATKTGAQLFLK---------CGQTARSIGILEEYLKV 199 (687)
Q Consensus 137 ~~~~~la~~-~~~~g~~~~A~~----~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~ 199 (687)
..|..++.. ....|++++|.+ .|++++.. +|.+..+|...+.+... .|++++|..+|++++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 788888754 345677777665 77777764 45677888888887765 7899999999999998
Q ss_pred CCCCCcHHHHHHHHHHH-------------HHcchHHHHHHHHHHHHHH---hcc----CCCc-------hHHHHHHHHH
Q 005632 200 HPSDADLSVIDLLVAIL-------------MENNAYEKTLQHIEHAQIV---RFS----GKEL-------PLKLKVKAGI 252 (687)
Q Consensus 200 ~p~~~~~~~~~~la~~~-------------~~~~~~~~A~~~~~~~~~~---~~~----~~~~-------~~~~~~~l~~ 252 (687)
.|.......|....... ...+++..|...+...... +.. ..|. ....|.....
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 56554222333322221 1234566666555542211 000 0111 0122322222
Q ss_pred HHHHc----CCH----HHHHHHHHHHhhhCchhhHHHHHHHHHHHHh-------cCChH-------HHHHHHHHhhhccC
Q 005632 253 CYLRL----GNM----EKAEILFADLQWKNAIDHADLITEVADTLMS-------LGHSN-------SALKYYHFLETNAG 310 (687)
Q Consensus 253 ~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~~~~ 310 (687)
..... ++. ..++..|++++...|. ++.+|..+|..+.. .|+++ +|+..|++++....
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 11111 122 3555666666666553 66666666666654 56655 66666666664225
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCCh
Q 005632 311 TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNP 389 (687)
Q Consensus 311 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 389 (687)
|+++.+|..+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|+.+|+++++..|...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~------- 390 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------- 390 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT-------
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch-------
Confidence 66666666666666666666666666666666666664 4666666666666666666666666666544332
Q ss_pred hhhhHHHHHHHHHH-HHHcCCchHHHHHHHHHHHH
Q 005632 390 WWLNEKIIMKLCHI-YRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 390 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~ 423 (687)
.++...+.+ +...|++++|...|++.++.
T Consensus 391 -----~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 391 -----HVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp -----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 133333333 23466666666666665544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.3e-26 Score=230.97 Aligned_cols=285 Identities=15% Similarity=0.086 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHH-HH-HHHHcchHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLL-VA-ILMENNAYEKTL 226 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l-a~-~~~~~~~~~~A~ 226 (687)
.|++++|+..++++++..|.+...+..+... .|... ....+ +. ++...|++++|+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDID---DLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHH---HHHHHHHhHHHHHcccHHHHH
Confidence 5555555555555555555444333322110 01100 01122 44 577889999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
..+++++.. .+....++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+..+++++
T Consensus 159 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 159 TLLHAALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988 6777888999999999999999999999999888774 78899999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 005632 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------------NIDARLTLASLLLEEAKEEEAITLLSPP 374 (687)
Q Consensus 307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 374 (687)
.. .|.++.++..+|.++...|++++|+..|+++++..|+ +..++..++.++...|++++|...++++
T Consensus 234 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DI-NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred Hc-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 87 7899999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CcCCcccC
Q 005632 375 KDLDSLDM 382 (687)
Q Consensus 375 ~~~~~~~~ 382 (687)
++..|.+.
T Consensus 313 l~~~~~~~ 320 (327)
T 3cv0_A 313 VEPFAKEF 320 (327)
T ss_dssp SHHHHHHT
T ss_pred HHhcchhh
Confidence 88766543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=5.2e-27 Score=233.72 Aligned_cols=268 Identities=15% Similarity=0.155 Sum_probs=219.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHL--------------AS-FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 177 (687)
...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999988777766 55 677788888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc
Q 005632 178 QLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL 257 (687)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (687)
.++...|++++|+..+++++...|++.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLANGNRPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888887764 6778888888888888888888888877 566666777777777777
Q ss_pred CCHHHHHHHHHHHhhhCchh-----------hHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 258 GNMEKAEILFADLQWKNAID-----------HADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 258 ~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
|++++|+..+++++...|.. ...++..++.++...|++++|...+++++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777776655431 45555556666666666666655555433
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=6.6e-27 Score=233.96 Aligned_cols=258 Identities=10% Similarity=0.042 Sum_probs=174.2
Q ss_pred hccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHH
Q 005632 95 AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-YEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 95 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
+.++|++..++..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 444555555555555555555556666666666666666555555566666655554 6666666666666666655566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (687)
+.+|.++...|++++|+..|+++++++|++.. +|+.+|.++...|++++|+.++++++.. +|.+..+++.+|.+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~--a~~~lg~~~~~~g~~~eAl~~~~~al~l----~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYH--AWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 66666666666666666666666665555543 4555566666666666666666666655 55555555666666
Q ss_pred HHH-cCCHHHH-----HHHHHHHhhhCchhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 005632 254 YLR-LGNMEKA-----EILFADLQWKNAIDHADLITEVADTLMSLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYL 325 (687)
Q Consensus 254 ~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 325 (687)
+.. .|..++| +..|++++..+|. +..+|..++.++...| ++++|++.+.++ .. .|+++.++..+|.+|.
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 555 3333444 4677777777774 7788888888888877 688999988887 44 7889999999999999
Q ss_pred Hhh--------c-HHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHc
Q 005632 326 SLK--------E-RAHAIMFFYKA-LDRFEDNIDARLTLASLLLEE 361 (687)
Q Consensus 326 ~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 361 (687)
.+| + +++|+.+|+++ ++++|.....|..++..+...
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 885 3 58999999999 999999999999998887654
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.2e-26 Score=232.15 Aligned_cols=251 Identities=15% Similarity=0.124 Sum_probs=215.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
....+...|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|..+|.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 455677788889999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHH-
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARS- 189 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A- 189 (687)
+...|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 5555777
Q ss_pred ----HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC-----
Q 005632 190 ----IGILEEYLKVHPSDADLSVIDLLVAILMENN--AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG----- 258 (687)
Q Consensus 190 ----~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 258 (687)
+..|++++.++|++.. +|+.++.++...| ++++|+..+.++ .. .+....++..+|.++...|
T Consensus 256 ~~~el~~~~~Al~l~P~~~~--a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNES--AWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHHhccccc
Confidence 4889999999998875 7888898888877 688888888776 44 6777788888888888874
Q ss_pred ----CHHHHHHHHHHH-hhhCchhhHHHHHHHHHHHHh
Q 005632 259 ----NMEKAEILFADL-QWKNAIDHADLITEVADTLMS 291 (687)
Q Consensus 259 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~la~~~~~ 291 (687)
.+++|+.+|+++ +..+|. ....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 247888888888 777774 77777777766654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=5.8e-25 Score=233.99 Aligned_cols=377 Identities=12% Similarity=0.033 Sum_probs=286.1
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.++..++..+. +...|++++|...|+++++.+|.++.+|..++..+...|++++|...|++++...| +...|..++.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 446677777777 47899999999999999999999999999999999999999999999999999999 5778888885
Q ss_pred -HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--H
Q 005632 111 -FAVQKGDTAQAMY----YIRQAIRA---EPKDISLRIHLASFYVE---------IGDYEKAAESYEQIQKLFPDNV--D 171 (687)
Q Consensus 111 -~~~~~g~~~~A~~----~~~~a~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~~~--~ 171 (687)
+....|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|..+|+++++ .|.+. .
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 4456688777665 77777764 56778888888887765 7889999999999998 56532 2
Q ss_pred HHHHHHHH---------------------------------------------------------------HHHc-----
Q 005632 172 ATKTGAQL---------------------------------------------------------------FLKC----- 183 (687)
Q Consensus 172 ~~~~la~~---------------------------------------------------------------~~~~----- 183 (687)
.+...... ....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 22111110 0000
Q ss_pred -CCh----HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-------cchHH-------HHHHHHHHHHH-HhccCCCch
Q 005632 184 -GQT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME-------NNAYE-------KTLQHIEHAQI-VRFSGKELP 243 (687)
Q Consensus 184 -g~~----~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~ 243 (687)
++. ..++..|++++...|.++. +|..+|.++.. .|+++ +|+..|++++. . .|..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~--~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----~p~~ 320 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPD--IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKN 320 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----CSSC
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----Cccc
Confidence 111 2556678888888887765 67788887775 67766 78888888886 5 5667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 005632 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAEC 323 (687)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 323 (687)
..++..++.++...|++++|...|++++...|.....+|..++.++...|++++|...|++++.. .|.....+...+.+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCchHHHHHHHHH
Confidence 78888888888888888888888888887766422357888888888888888888888888876 55566666655554
Q ss_pred -HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHH
Q 005632 324 -YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCH 402 (687)
Q Consensus 324 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~ 402 (687)
+...|++++|...|+++++..|+++.++..++.++...|+.++|..+|++++...|.++. ....++...+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~--------~~~~lw~~~~~ 471 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------KSGEIWARFLA 471 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG--------GCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH--------HHHHHHHHHHH
Confidence 345788888888888888888888888888888888888888888888888876554331 01235566677
Q ss_pred HHHHcCCchHHHHHHHHHHHHhh
Q 005632 403 IYRAKGMPEDFVDAIFPLVCESL 425 (687)
Q Consensus 403 ~~~~~g~~~~A~~~~~~~~~~~~ 425 (687)
.....|+.+.+..++.++++..+
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 77778888888888888777665
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=3.4e-26 Score=212.03 Aligned_cols=200 Identities=21% Similarity=0.260 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|++...++..|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 111 FAVQK-----------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 111 ~~~~~-----------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 88888 888888888888888888888888888888888888888888888888888 788888888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
+...|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..++++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLD--LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888888765 67788888888888888888877653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.8e-24 Score=209.56 Aligned_cols=277 Identities=13% Similarity=0.116 Sum_probs=196.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
....+..|+|++|+..++++...+|++ .+....++.+|+..|++++|+..++. .+|....++..++..+...|+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 566778899999999988877777766 45778888899999999999887755 25556777888888888888999
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 120 QAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 120 ~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
+|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |+++.++..+|.++..+|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988875 588888899999999999999999988887 7888888889999999999999999999988
Q ss_pred HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632 198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277 (687)
Q Consensus 198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 277 (687)
+.+|++........+..++...|++++|+..|++++.. .|.+..++..+|.++...|++++|+..|++++..+|.
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 88887642111111223333457777777777777776 5555666666666666666666666666666665553
Q ss_pred hHHHHHHHHHHHHhcCChHH-HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 005632 278 HADLITEVADTLMSLGHSNS-ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 335 (687)
++.++..+|.++...|++.+ +..++++++.. .|+++.+. .+..+.+.|+++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-HRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCChHHH----HHHHHHHHHHHHHH
Confidence 55556666666666665544 34555555554 55555433 23334444444443
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=2.9e-25 Score=205.79 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=167.6
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 005632 145 FYVEI-----------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLV 213 (687)
Q Consensus 145 ~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la 213 (687)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+ +++. ++..+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999988 5543 788899
Q ss_pred HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 214 AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 214 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988 77788888888888888888888888887753
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=4.1e-25 Score=213.62 Aligned_cols=251 Identities=12% Similarity=0.078 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLT 110 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 110 (687)
..++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999998 4433 445899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|......+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995555566999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcch---HHHHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHHcCCHHHH
Q 005632 191 GILEEYLKVHPSDADLSVIDLLVAILMENNA---YEKTLQHIEHAQIVRFSGKE----LPLKLKVKAGICYLRLGNMEKA 263 (687)
Q Consensus 191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A 263 (687)
..++++++.+|++.. ++..+|.++...|+ +++|+..++++++.....+. ....++..+|.++...|++++|
T Consensus 163 ~~~~~a~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELKPNIYI--GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHSTTCHH--HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCccchH--HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999865 78889999999998 88899999999987421111 0224555666666666666666
Q ss_pred HHHHHHHhhhCchhhHHHHHHHHHHH
Q 005632 264 EILFADLQWKNAIDHADLITEVADTL 289 (687)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~la~~~ 289 (687)
+.++++++..+|. ++.++..++.+.
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~ 265 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC---
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhh
Confidence 6666666666553 555555444433
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-24 Score=204.61 Aligned_cols=240 Identities=16% Similarity=0.082 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005632 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN-------VDAT 173 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~ 173 (687)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|++ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34566667777777777777777777777766 666677777777777777777777777777766654 5677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253 (687)
Q Consensus 174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (687)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++.. .|....++..+|.+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------ADILTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch----------hHHHHHHhHHHHHHHHHHHHHHc----CcchHHHHHHHHHH
Confidence 77777777777777777777777777665 24466677888888888888887 77778888888888
Q ss_pred HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA 333 (687)
Q Consensus 254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 333 (687)
+...|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888775 7888999999999999999999999999887 788999999999999999999999
Q ss_pred HHHHHHHHHhc------CCCHHHHHHHHHH
Q 005632 334 IMFFYKALDRF------EDNIDARLTLASL 357 (687)
Q Consensus 334 ~~~~~~al~~~------p~~~~~~~~la~~ 357 (687)
+..|+++++.+ |++..++..++.+
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999998 8888887777654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=206.02 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-------HHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-------SALW 105 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 105 (687)
.+..++.+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+.+++...|++ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56778889999999999999999999999999 889999999999999999999999999999988876 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
..+|.++...|++++|+..|++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999886 4567778889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632 186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 265 (687)
Q Consensus 186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 265 (687)
+++|+..+++++..+|.+.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999998764 7889999999999999999999999998 77778888889999999999999999
Q ss_pred HHHHHhhhCc-----hhhHHHHHHHHH
Q 005632 266 LFADLQWKNA-----IDHADLITEVAD 287 (687)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~la~ 287 (687)
.+++++...| +.+..++..++.
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9998887762 124555544443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=6.2e-24 Score=205.82 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=240.4
Q ss_pred HHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 76 LAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154 (687)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 154 (687)
...+..|+|.+|+..++++...+|++ .+....++.+|...|++++|+..++. .+|.+..++..++..+...|++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 45678899999999999998888887 46778899999999999999998866 356667788899999999999999
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632 155 AAESYEQIQKL--FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232 (687)
Q Consensus 155 A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 232 (687)
|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+.. ++..+|.++...|++++|+..++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~--~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE--CMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999876 699999999999999999999999999998 66654 7889999999999999999999999
Q ss_pred HHHhccCCCchHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632 233 QIVRFSGKELPLKLKVKAG--ICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310 (687)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 310 (687)
+.. .|.........+ .++...|++++|+..|++++...|. ++.++..+|.++...|++++|+..|++++.. .
T Consensus 157 ~~~----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~ 230 (291)
T 3mkr_A 157 QDQ----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDK-D 230 (291)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred Hhh----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 998 554443333333 3333458999999999999999885 8999999999999999999999999999988 8
Q ss_pred CCcHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 311 TDNGYLYLKLAECYLSLKERAH-AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 311 ~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
|+++.++.++|.++...|++.+ +..+++++++.+|+++.+. .+..+.+.++++..-|.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQYA 289 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHcC
Confidence 9999999999999999999976 5789999999999998765 45667778888876664
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=1.4e-24 Score=209.94 Aligned_cols=260 Identities=12% Similarity=-0.042 Sum_probs=184.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHL 142 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l 142 (687)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888888888888888888888 3333 3447888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~ 222 (687)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+.. ++..+|......+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--VFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--HHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888777664 677777444445578
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH
Q 005632 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL 299 (687)
Q Consensus 223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 299 (687)
++|+..++++++. .|....++..+|.++...|+ +++|+..+++++..... .+..
T Consensus 159 ~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~------------------ 215 (272)
T 3u4t_A 159 VKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-GGAK------------------ 215 (272)
T ss_dssp HHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-GGGG------------------
T ss_pred HHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-cccc------------------
Confidence 8888888887777 55556666666766666666 55666666665543211 0000
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 005632 300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361 (687)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 361 (687)
..+....++..+|.++...|++++|+.+|+++++++|+++.++-.++.+....
T Consensus 216 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 216 ---------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 00002246667777777778888888888888888887777777776655443
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=224.02 Aligned_cols=304 Identities=16% Similarity=0.126 Sum_probs=200.8
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCC
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPK 100 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~ 100 (687)
......++..|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667788889999999999999999999999888874 57888889999999999999988888766 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 005632 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGD--------------------YEK 154 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 154 (687)
...++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46677788888888888888888888887765432 3467777777777777 777
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHH
Q 005632 155 AAESYEQIQKLF------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 155 A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~ 224 (687)
|+..+.+++... |....++..+|.++...|++++|+..+++++...|.... ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 777776666541 122344555555555566666666655555554433222 1134455555555555555
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632 225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (687)
|+.++++++...+... .+.....++..+|.++...|++++|+.++++
T Consensus 246 A~~~~~~al~~~~~~~---------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLK---------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc---------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5555555554421110 0111245556666666666666666666666
Q ss_pred hhhcc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHH
Q 005632 305 LETNA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEA 367 (687)
Q Consensus 305 ~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 367 (687)
++... .+....++..+|.++...|++++|+.++++++++.+ ....++..++.++...|+...+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 55441 111256777888888888888888888888887743 2356777788888888876443
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=7.2e-25 Score=226.82 Aligned_cols=347 Identities=14% Similarity=0.090 Sum_probs=268.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
+..|..++..|++++|+..|+++.+. +++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 45688999999999999999999876 5788999999999999999 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632 115 KG-----DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA---AESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186 (687)
Q Consensus 115 ~g-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 186 (687)
.+ ++++|+.+|++++.. .++.+++.+|.+|...+...++ .+.+.++.. +.++.+++.+|.+|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 76 889999999999985 4555899999999988765544 444444443 34678999999999999987
Q ss_pred HHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc----C
Q 005632 187 ARSIGILEEYLKV-HPSDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL----G 258 (687)
Q Consensus 187 ~~A~~~~~~~~~~-~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 258 (687)
+++.......... ...++. +++.+|.++...| ++++|+.+|+++... .+.....++.+|.+|... +
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHHHTCGGGSSC
T ss_pred ccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCCCC
Confidence 7777664444433 223333 7889999999999 999999999999998 777777789999999766 7
Q ss_pred CHHHHHHHHHHHhhhCchhhHHHHHHHHHH-H--HhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh-----cH
Q 005632 259 NMEKAEILFADLQWKNAIDHADLITEVADT-L--MSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK-----ER 330 (687)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~ 330 (687)
++++|+.+|+++. + .++.+++.+|.+ + ...+++++|+.+|+++... .++.+++.+|.+|. .| ++
T Consensus 232 d~~~A~~~~~~aa---~-g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA---P-GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG---G-GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc---C-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 4 489999999998 4 5789999999999998854 58899999999998 66 99
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH
Q 005632 331 AHAIMFFYKALDRFEDNIDARLTLASLLLE----EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA 406 (687)
Q Consensus 331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 406 (687)
++|+.+|+++. |+++.+.+.||.+|.. ..++++|+.+|+++.+... + .+.+.+|.+|..
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~------------~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--N------------SADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--T------------THHHHHHHHHHS
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--H------------HHHHHHHHHHHh
Confidence 99999999998 8999999999999987 3499999999999887543 2 388999999974
Q ss_pred ----cCCchHHHHHHHHHHHHh
Q 005632 407 ----KGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 407 ----~g~~~~A~~~~~~~~~~~ 424 (687)
..++.+|..+|....+..
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCC
Confidence 458899999999988654
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=222.50 Aligned_cols=321 Identities=13% Similarity=0.101 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDIS 137 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~ 137 (687)
...++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.++++++... |....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455556666666666666666666665555542 345555555555555555555555555431 22233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHH
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLV 213 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la 213 (687)
++..+|.++...|++++|+..+++++... |.... ..++..+|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDIS----------------------------------RELNDKVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------------HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------------HhcccccchHHHHHHHH
Confidence 44445555555555555555555544443 32211 12455566
Q ss_pred HHHHHcch--------------------HHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 214 AILMENNA--------------------YEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 214 ~~~~~~~~--------------------~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.++...|+ +++|+..+++++..... +.+....++..+|.++...|++++|+..+++++
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 66666666666655321 123344567777777777777777777777766
Q ss_pred hhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC------cHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632 272 WKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYLKLAECYLSLKERAHAIMFFYKA 340 (687)
Q Consensus 272 ~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 340 (687)
...+. ....++..+|.++...|++++|+.++++++.. .+. ...++..+|.++...|++++|+.+|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 54332 23447788888888888888888888887765 222 2678899999999999999999999999
Q ss_pred HHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC-CCCChhhhhHHHHHHHHHHHHHcCCchHH
Q 005632 341 LDRFEDN------IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS-DKSNPWWLNEKIIMKLCHIYRAKGMPEDF 413 (687)
Q Consensus 341 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A 413 (687)
++..+.. ..++..+|.++...|++++|+.+++++++..+..... .....+..-..++..+|..+.......++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 9986644 6788999999999999999999999988764433221 11223344557888999887777777777
Q ss_pred HHHHHHHHHH
Q 005632 414 VDAIFPLVCE 423 (687)
Q Consensus 414 ~~~~~~~~~~ 423 (687)
...+...++.
T Consensus 374 ~~~~~~~l~~ 383 (406)
T 3sf4_A 374 NTEIDSSLNG 383 (406)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 7776666544
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=3.8e-23 Score=212.95 Aligned_cols=283 Identities=15% Similarity=0.106 Sum_probs=192.5
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCC
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPK 100 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~ 100 (687)
+.....++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+.+|++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 35566777888999999999999999999999888876 47888899999999999999999888877 466
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 005632 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHLASFYVEIGD-----------------YEKAAE 157 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 157 (687)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6777888888888888888888888888876 34455677888888888888 778887
Q ss_pred HHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHH
Q 005632 158 SYEQIQKLFP------DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQ 227 (687)
Q Consensus 158 ~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~ 227 (687)
++++++++.+ ....++..+|.++...|++++|+.++++++...+.... ..++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 7777776532 22346667777777777777777777777666544322 1245566666666666666666
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (687)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (687)
++++++...+..... .....++..+|.++...|++++|+.++++++.
T Consensus 285 ~~~~al~~~~~~~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 285 HYKRTLALAVELGER---------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHTTCH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666653211110 01233444455555555555555555554443
Q ss_pred cc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 308 NA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 308 ~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
.. .+....++..+|.++...|++++|..+|++++++.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 21 1123456666777777777777777777777766653
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=1.5e-23 Score=217.04 Aligned_cols=317 Identities=15% Similarity=0.121 Sum_probs=233.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT---AQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..+|..++..|++++|+..|+++.+. +++.+++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 45789999999999999999999765 5678899999999999998 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcchH
Q 005632 149 IG-----DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 149 ~g-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~la~~~~~~~~~ 222 (687)
.+ ++++|+.+|+++++. .++.+++.+|.+|...+..+++...++...... +.++. +++.+|.+|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~--a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPE--AGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTT--HHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCc
Confidence 66 889999999999985 455689999999998877655544443333322 22333 688999999999866
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc----CCh
Q 005632 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSL----GHS 295 (687)
Q Consensus 223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~ 295 (687)
+++............ ...+.+++.+|.++...| ++++|+..|+++....+. ....++.+|.+|... +++
T Consensus 158 ~~~~~~a~~~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 655555444333322 122338899999999999 999999999999988775 777779999999766 799
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHH-H--HHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHH
Q 005632 296 NSALKYYHFLETNAGTDNGYLYLKLAEC-Y--LSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA-----KEEEA 367 (687)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A 367 (687)
++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.+. +++.+++.+|.+|. .| ++++|
T Consensus 234 ~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 99999999987 6788999999998 4 5788999999999999864 58999999999998 66 99999
Q ss_pred HHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH----cCCchHHHHHHHHHHHH
Q 005632 368 ITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA----KGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 423 (687)
+.+|+++. +.++ .+++.+|.+|.. ..++++|+.+|++..+.
T Consensus 307 ~~~~~~Aa---~g~~------------~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 307 EAHFEKAV---GREV------------AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHTTT---TTCH------------HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHh---CCCH------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99999998 4433 599999999976 33888898888877643
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=3.9e-23 Score=195.90 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=181.6
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
......++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632 191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 256 (687)
Q Consensus 191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (687)
..+++++...|.+.. ++..+|.++...|++++|+..+++++.. .|....++..++.+...
T Consensus 180 ~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPGHAD--AFYNAGVTYAYKENREKALEMLDKAIDI----QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTHHHHHHHHHHHH----CTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHcc----CcchHHHHHHHHHHHhh
Confidence 999999999998765 7889999999999999999999999998 67777777666655443
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=2.7e-23 Score=214.11 Aligned_cols=283 Identities=15% Similarity=0.116 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISL 138 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~ 138 (687)
..++.+|..+...|++++|+..|++++...|+++ .++..+|.++...|++++|+.++++++.. .|....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445555555555555555555555555555544 34555555555555555555555555544 2333344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~ 218 (687)
+..+|.++...|++++|+..|++++...+... + .|. ...++..+|.++..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~--------------~~~--~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG--------------D--------------RLS--EGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------C--------------HHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------c--------------hHH--HHHHHHHHHHHHHH
Confidence 44455555555555555555554444311000 0 111 11245556666666
Q ss_pred cch-----------------HHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch---
Q 005632 219 NNA-----------------YEKTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI--- 276 (687)
Q Consensus 219 ~~~-----------------~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 276 (687)
.|+ +++|+.++++++.... .+.+....++..+|.++...|++++|+.++++++...+.
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666666666665432 112334456777777777777777777777777665432
Q ss_pred --hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC--
Q 005632 277 --DHADLITEVADTLMSLGHSNSALKYYHFLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-- 347 (687)
Q Consensus 277 --~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 347 (687)
....++..+|.++...|++++|+.++++++.... . ....++..+|.++...|++++|+.++++++...+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 1234788889999999999999999988876521 1 236788999999999999999999999999986533
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632 348 ----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381 (687)
Q Consensus 348 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 381 (687)
..++..+|.++...|++++|+.++++++...+..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 5688899999999999999999999999987764
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=6.5e-23 Score=204.78 Aligned_cols=281 Identities=15% Similarity=0.121 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCCH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL----PETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPKDS 102 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~ 102 (687)
+...++..|..++..|++++|+..|+++++..|++ ..++..+|.++...|++++|+.++++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45677888999999999999999999999998887 467888899999999999999999888776 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGD--------------------YEKAA 156 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 156 (687)
.++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 677888888888888888888888887765432 2367777778877777 77777
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHH
Q 005632 157 ESYEQIQKLF------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTL 226 (687)
Q Consensus 157 ~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~ 226 (687)
..+++++... +....++..+|.++...|++++|+..+++++...+.... ..++..+|.++...|++++|+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777766542 122345556666666666666666666666554332221 123445555555555555555
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 306 (687)
.++++++...+.... +.....++..+|.++...|++++|+.++++++
T Consensus 244 ~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 244 EYYKKTLLLARQLKD---------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHTTC---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc---------------------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555555544221100 11124445555666666666666666665554
Q ss_pred hcc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 307 TNA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 307 ~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
... .+....++..+|.++...|++++|..++++++++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 431 1112446667777777777777777777777776554
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=3.7e-23 Score=200.18 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=168.7
Q ss_pred HhcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLS----PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34577888888888887763 44567778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|+++.....++.. ...|++++|+..+++++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence 88888888888887777888888888888888888888888888887777655544433 55577777777777777777
Q ss_pred CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH
Q 005632 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD 280 (687)
Q Consensus 201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 280 (687)
|.+.. ...++.++...++.++|+..+.+++...+... +..+.
T Consensus 175 ~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~ 216 (275)
T 1xnf_A 175 DKEQW---GWNIVEFYLGNISEQTLMERLKADATDNTSLA-----------------------------------EHLSE 216 (275)
T ss_dssp CCCST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-----------------------------------HHHHH
T ss_pred CcchH---HHHHHHHHHHhcCHHHHHHHHHHHhccccccc-----------------------------------ccccH
Confidence 76653 23466666666666777777666654411101 11345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHH
Q 005632 281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFF 337 (687)
Q Consensus 281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 337 (687)
.+..+|.++...|++++|+..|++++.. .|.+.. ..+.++...|++++|++.|
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 5566666666666666666666666654 343322 2245556666666666655
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=2.4e-22 Score=181.29 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
++..++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCC
Q 005632 193 LEEYLKVHPSD 203 (687)
Q Consensus 193 ~~~~~~~~p~~ 203 (687)
|+++++.+|++
T Consensus 164 ~~~al~~~p~~ 174 (184)
T 3vtx_A 164 FKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHhCCccC
Confidence 88888887764
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1.8e-22 Score=201.60 Aligned_cols=276 Identities=15% Similarity=0.126 Sum_probs=191.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYEKAAESYEQIQKL------FPDNVDATK 174 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~ 174 (687)
+...|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 44445555555555555555555555555552 34555555555555555555555555544 222345566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch--------------------HHHHHHHHH
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA--------------------YEKTLQHIE 230 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~--------------------~~~A~~~~~ 230 (687)
.+|.++...|++++|+..+++++...+.... ..++..+|.++...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6666666666666666666666665443322 2356677777777777 788888887
Q ss_pred HHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632 231 HAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYH 303 (687)
Q Consensus 231 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 303 (687)
+++.... .+.+....++..+|.++...|++++|+..+++++...+. ....++..+|.++...|++++|+..++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7776532 122334567778888888888888888888887764332 234478899999999999999999999
Q ss_pred HhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 304 FLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN------IDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 304 ~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
+++.... + ....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..+++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 8876521 1 126788999999999999999999999999886543 5588899999999999999999999
Q ss_pred CCCcCCcc
Q 005632 373 PPKDLDSL 380 (687)
Q Consensus 373 ~a~~~~~~ 380 (687)
++++..+.
T Consensus 328 ~a~~~~~~ 335 (338)
T 3ro2_A 328 KHLEISRE 335 (338)
T ss_dssp HHHHC---
T ss_pred HHHHHHHh
Confidence 88877653
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=3.2e-20 Score=202.63 Aligned_cols=326 Identities=14% Similarity=0.095 Sum_probs=266.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
.|..+...|.+++|..+|+++- ....+ +...+...|++++|.++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 3899999999999999999972 11111 233344889999999999876 56899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
+|+..|.++ +++..+..++.++...|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|. .
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----N 1191 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----h
Confidence 999999886 78999999999999999999999999999998744 3334469999999999885 44332 2
Q ss_pred CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH
Q 005632 200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279 (687)
Q Consensus 200 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 279 (687)
.+... .+..+|..+...|+|++|..+|.++- .|..++.++.+.|++++|++.++++ .+.
T Consensus 1192 ~~n~a---d~~~iGd~le~eg~YeeA~~~Y~kA~------------ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1192 GPNNA---HIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred CCCHH---HHHHHHHHHHhcCCHHHHHHHHHhhh------------HHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 33332 56789999999999999999999962 4788999999999999999999998 367
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005632 280 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 359 (687)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 359 (687)
.+|...+.++...|++..|..+...+ ..+++.+..++..|...|.+++|+.++++++.++|.+...+..++.++.
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 89999999999999999999988542 3356667789999999999999999999999999999999988888877
Q ss_pred Hc--CCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632 360 EE--AKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421 (687)
Q Consensus 360 ~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 421 (687)
+- ++..+++++|....+..+.-. +-.....|..+..+|.+-|+++.|+..+..-.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r-------~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLR-------AAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhH-------HHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 64 678899999988777655211 11133578899999999999999976554433
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=5.4e-22 Score=191.94 Aligned_cols=251 Identities=13% Similarity=0.047 Sum_probs=186.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 75 GLAHSALGNHKSAFDFYVIAAHLS----PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+......|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 333445678888999998888863 4567788888888888899999999998888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHH
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIE 230 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 230 (687)
++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++.. .. ....+....|++++|+..+.
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888763 22 22233455577777777777
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-
Q 005632 231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA- 309 (687)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 309 (687)
+++.. .+..... ..+ +.++...++.++|+..+++++...
T Consensus 169 ~~~~~----~~~~~~~-~~~-----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 169 QHFEK----SDKEQWG-WNI-----------------------------------VEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHH----SCCCSTH-HHH-----------------------------------HHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHhc----CCcchHH-HHH-----------------------------------HHHHHHhcCHHHHHHHHHHHhcccc
Confidence 77666 2222111 123 333444444455555555444331
Q ss_pred --CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 005632 310 --GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371 (687)
Q Consensus 310 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 371 (687)
.|.++.++..+|.++...|++++|+..|+++++.+|++... .+.++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 12346789999999999999999999999999999977543 377888999999999887
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=1.8e-21 Score=185.65 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (687)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999 7888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.+++++...|.+.. ++..++.++...|++++|..++++++..
T Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999887765 6888999999999999999999999988
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=3.7e-22 Score=189.20 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=161.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678888999999999999999999999988988889999999999999999999999999998888888889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~ 226 (687)
...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--ARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999988888888888888888889999999888888888887664 6778888888888888888
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
..+++++.. .+....++..+|.++...|++++|+..+++++...|. ++.++..++.+..
T Consensus 180 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 180 SQFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC---
T ss_pred HHHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHh
Confidence 888888877 5556667777777777777777777777777776664 5555555554443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=4.4e-21 Score=179.24 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=168.5
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
|.++..++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45666777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632 111 FAVQK-GDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 111 ~~~~~-g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 187 (687)
++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 888888888888888 556667888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 188 RSIGILEEYLKVHP-SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 188 ~A~~~~~~~~~~~p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
+|+..+++++...| .+.. .+..++.++...|++++|..+++.+...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 6554 5667777778888888888888887766
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1.2e-21 Score=176.67 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=157.6
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A 225 (687)
+...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+.. ++..+|.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR--AYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh--HHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999998875 788999999999999999
Q ss_pred HHHHHHHHHH
Q 005632 226 LQHIEHAQIV 235 (687)
Q Consensus 226 ~~~~~~~~~~ 235 (687)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999988
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.5e-20 Score=181.44 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRI 140 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~ 140 (687)
|+++.+++.+|.++...|++++|+.+|+++++ |+++.++..+|.++.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 45555666666666666666666666666655 4555556666666665 666666666666655543 455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 005632 141 HLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLL 212 (687)
Q Consensus 141 ~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 212 (687)
.+|.++.. .+++++|+..|+++++. +++.++..+|.+|.. .+++++|+.+|+++++..+ ..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----HHHHHHH
Confidence 55555555 55555555555555554 245555555555555 5555555555555555431 1234455
Q ss_pred HHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHH
Q 005632 213 VAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT 288 (687)
Q Consensus 213 a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 288 (687)
|.++.. .+++++|+.+|+++++ .. .+.++..+|.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------------------~~---~~~a~~~lg~~ 191 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACD--------------------------------------LK---DSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH--------------------------------------TT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH--------------------------------------CC---CHHHHHHHHHH
Confidence 555554 4455555555544443 31 34555566666
Q ss_pred HHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhcCCCH
Q 005632 289 LMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS----LKERAHAIMFFYKALDRFEDNI 348 (687)
Q Consensus 289 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 348 (687)
+.. .+++++|+.+|++++.. . .+.+++.+|.+|.. .+++++|+.+|+++++..|++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-E--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-C--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 666 66666666666666644 2 25566667777766 6677777777777777666543
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.7e-20 Score=181.05 Aligned_cols=228 Identities=16% Similarity=0.107 Sum_probs=207.4
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWK 106 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 106 (687)
+.+...++..|..++..|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 34567788999999999999999999999998 7889999999999999 999999999999999875 789999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 107 QLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 107 ~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 99999999 99999999999999987 489999999999999 999999999999999975 6889999999
Q ss_pred HHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 005632 179 LFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA 250 (687)
Q Consensus 179 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 250 (687)
++.. .+++++|+..|+++++..+ ..++..+|.++.. .+++++|+.+++++++. .+ ..++..+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~--~~a~~~l 224 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----EN--GGGCFNL 224 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TC--HHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----CC--HHHHHHH
Confidence 9999 9999999999999998743 2478899999999 99999999999999987 33 6778889
Q ss_pred HHHHHH----cCCHHHHHHHHHHHhhhCch
Q 005632 251 GICYLR----LGNMEKAEILFADLQWKNAI 276 (687)
Q Consensus 251 ~~~~~~----~~~~~~A~~~~~~~~~~~~~ 276 (687)
|.++.. .+++++|+.+|++++...|.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 999998 89999999999998887664
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=2.7e-21 Score=196.76 Aligned_cols=312 Identities=11% Similarity=0.028 Sum_probs=242.9
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CchHHH--HHH--HHHHHHcCChHHHH-----------HHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP---NLPETY--NTL--GLAHSALGNHKSAF-----------DFYV 92 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~ 92 (687)
+..+...+.....+...+++++|..+++++.+.-+ .+...+ +.+ .......+++..+. +.++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 34688899999999999999999999999866432 244433 222 22222334444444 5555
Q ss_pred HHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 93 IAAHLSPKDSA------LWKQLLTFAVQKGDTAQAMYYIRQAIRA---EPK---DISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 93 ~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
++-. .|.... .++.+|.++...|++++|+.+|++++.. .++ ...++..+|.++...|++++|+.+++
T Consensus 89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 232222 3445899999999999999999999986 233 35789999999999999999999999
Q ss_pred HHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHH
Q 005632 161 QIQKLFPDN-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHI 229 (687)
Q Consensus 161 ~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~ 229 (687)
+++++.+.. ..++..+|.++...|++++|+..++++++..+...+ ..++..+|.++...|++++|+.++
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999885433 457889999999999999999999999988654432 236889999999999999999999
Q ss_pred HHHHHHhcc-CC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc----hhhHHHHHHHHHHHHhcCC---hHHHHH
Q 005632 230 EHAQIVRFS-GK-ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADLITEVADTLMSLGH---SNSALK 300 (687)
Q Consensus 230 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~ 300 (687)
++++..... .. +....++..+|.++...|++++|+.++++++...+ +.....+..++.++...|+ +.+|+.
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999986432 13 66788899999999999999999999999876532 1233346779999999999 888888
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 345 (687)
.+++.. ..+....++..+|.+|...|++++|..+|++++++..
T Consensus 328 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 328 FLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888763 2456677888999999999999999999999998754
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=7.1e-21 Score=177.86 Aligned_cols=212 Identities=16% Similarity=0.061 Sum_probs=167.0
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
..|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 005632 143 ASFYVEI-GDYEKAAESYEQIQK--LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219 (687)
Q Consensus 143 a~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~ 219 (687)
|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+.. ++..+|.++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP--AFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHc
Confidence 8888888 888888888888888 55666778888888888888888888888888888877654 677888888888
Q ss_pred chHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632 220 NAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL 281 (687)
Q Consensus 220 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 281 (687)
|++++|+..+++++.. .| .....+..++.++...|+.++|..+++.+....|. ++.+
T Consensus 161 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~ 218 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSR----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEEL 218 (225)
T ss_dssp TCHHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHH
Confidence 8888888888888777 44 55556666777777777777777777777666553 4443
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=3.7e-21 Score=183.42 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=172.2
Q ss_pred hCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 63 LSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (687)
Q Consensus 63 ~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 141 (687)
.+|.+ +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 67788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 005632 142 LASFYVEIGDYEKAAESYEQIQK--LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~ 219 (687)
+|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--VALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHc
Confidence 88888888888888888888888 77777888888888888888888888888888888887654 677888888888
Q ss_pred chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL 281 (687)
Q Consensus 220 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 281 (687)
|++++|+..+++++.. .+.....+..++.++...|++++|...+++++...|. ++..
T Consensus 189 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 245 (252)
T 2ho1_A 189 REYVPARQYYDLFAQG----GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEY 245 (252)
T ss_dssp TCHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHH
T ss_pred CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHH
Confidence 8888888888888776 5566667777777777888888888888777776664 4433
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=5.1e-22 Score=206.80 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=167.2
Q ss_pred CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 82 GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT-AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 82 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
+.+++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466777777777777777777777777777777777 778777877777777777777777877777788888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc--------chHH
Q 005632 161 QIQKLFPDNVDATKTGAQLFLKC---------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN--------NAYE 223 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~--------~~~~ 223 (687)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++.. ++..+|.++... |+++
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhhccccchHH
Confidence 87777777 57777777777777 7778888888888777777664 677777777777 7788
Q ss_pred HHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632 224 KTLQHIEHAQIVRFSGKE---LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 224 ~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
+|+..|++++.. .| ....+++.+|.++...|++++|+..|++++...|. ++.++..++.++...|++++|+.
T Consensus 239 ~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 56 67777788888888888888888888887777774 77778888888888888888887
Q ss_pred HHHHh
Q 005632 301 YYHFL 305 (687)
Q Consensus 301 ~~~~~ 305 (687)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 77654
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=6.3e-19 Score=192.60 Aligned_cols=456 Identities=14% Similarity=0.075 Sum_probs=309.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 40 EASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.+..+...|.+.+|+++|++++ ..|. +......++.+..+. +..+..++..+.-..+ ...+|.++...
T Consensus 991 ~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhC
Confidence 3566779999999999999999 4444 444444455555544 3444444444432211 23489999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE 195 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 195 (687)
|.+++|...|+++- .... .+...+...|++++|+++++++ +.+.+|+.+|..+...|++++|+..|.+
T Consensus 1063 glyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999973 1111 2233345889999999999876 6689999999999999999999999987
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 196 ~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
+ +++. .+..++.++...|++++|+++|..+.+. . ....+...+|.+|.+.+++++ +..|. . .+
T Consensus 1131 A-----dD~s--ay~eVa~~~~~lGkyEEAIeyL~mArk~----~-~e~~Idt~LafaYAKl~rlee-le~fI---~-~~ 1193 (1630)
T 1xi4_A 1131 A-----DDPS--SYMEVVQAANTSGNWEELVKYLQMARKK----A-RESYVETELIFALAKTNRLAE-LEEFI---N-GP 1193 (1630)
T ss_pred c-----CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----c-ccccccHHHHHHHHhhcCHHH-HHHHH---h-CC
Confidence 5 4443 6889999999999999999999999887 2 122223359999999999885 44332 1 22
Q ss_pred hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632 276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355 (687)
Q Consensus 276 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 355 (687)
+...+..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ .+..+|...+
T Consensus 1194 --n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 --NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence 3456668999999999999999999875 47889999999999999999999998 5679999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh
Q 005632 356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK 435 (687)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 435 (687)
.++...|++..|..+... +...| +.+..++..|...|.+++|+..++..+..- ..+...-..
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~---------------deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE- 1319 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHA---------------DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE- 1319 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH-
Confidence 999999999999998874 43344 366799999999999999999998876432 100000000
Q ss_pred hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhh
Q 005632 436 VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQ 515 (687)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (687)
+..........+. .|.+..+.
T Consensus 1320 ----------------------------LaiLyaKy~pekl--------------mEhlk~f~----------------- 1340 (1630)
T 1xi4_A 1320 ----------------------------LAILYSKFKPQKM--------------REHLELFW----------------- 1340 (1630)
T ss_pred ----------------------------HHHHHHhCCHHHH--------------HHHHHHHH-----------------
Confidence 0000000000000 01111111
Q ss_pred hhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc------cCchhhHHHHHHhhhhhhcccCCC
Q 005632 516 EAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYN------ILPLEKKEELRSLGAKMAYDSTDP 589 (687)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~ 589 (687)
...-++.++..-+...+...++.+|.+-|+++.|+...-........ .+.+..+.++.+-.+..++ ++.
T Consensus 1341 ---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~ 1415 (1630)
T 1xi4_A 1341 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK 1415 (1630)
T ss_pred ---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhC
Confidence 12223446677788888999999999999999997765444333111 0111223344444444333 666
Q ss_pred cchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHH
Q 005632 590 NHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLR 638 (687)
Q Consensus 590 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 638 (687)
..++..+..++...-+...+..+ +...++ ++-...|+..+.
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l----~~~~~~----l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNY----FSKVKQ----LPLVKPYLRSVQ 1456 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHH----HHHcCC----hHHhHHHHHHHH
Confidence 67777777777655454444433 455555 444455555443
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=4.8e-21 Score=188.10 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHc
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSA-------LGNH-------KSAFDFYVIAAH-LSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 115 (687)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566666666666666666666666666553 3554 556666666665 4555555666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDIS-LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL 193 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 193 (687)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666665555554 555555555555566666666666655555555555444443322 45555555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
+++++.+|+++. +|..++.++...|++++|...|++++...+ .+| ....++..++..+...|+++.|..++++++.
T Consensus 193 ~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 193 ELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555443 455555555555555555555555554300 011 2334444444444445555555555555444
Q ss_pred hCc
Q 005632 273 KNA 275 (687)
Q Consensus 273 ~~~ 275 (687)
..|
T Consensus 270 ~~p 272 (308)
T 2ond_A 270 AFR 272 (308)
T ss_dssp HTT
T ss_pred Hcc
Confidence 444
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=9.8e-21 Score=185.91 Aligned_cols=253 Identities=13% Similarity=0.021 Sum_probs=218.4
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 005632 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-------KGDT-------AQAMYYIRQAIR-AEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~ 149 (687)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 578899999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-cchHHHHHH
Q 005632 150 GDYEKAAESYEQIQKLFPDNVD-ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQ 227 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~ 227 (687)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+.. ++...+.+... .|++++|..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--VYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999887 9999999999999999999999999999998754 55555555433 799999999
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---CchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK---NAIDHADLITEVADTLMSLGHSNSALKYYHF 304 (687)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 304 (687)
.|+++++. .|....++..++.++...|++++|+.+|++++.. .|.....+|..++..+...|++++|..++++
T Consensus 191 ~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999 6677899999999999999999999999999985 3334788999999999999999999999999
Q ss_pred hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 356 (687)
Q Consensus 305 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 356 (687)
++.. .|+++.... ++.+. .++ +.+.+.|+++.++..||.
T Consensus 267 a~~~-~p~~~~~~~-~~~~~---~r~--------~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 267 RFTA-FREEYEGKE-TALLV---DRY--------KFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHH-TTTTTSSCH-HHHHH---TTT--------CBTTBCSSCHHHHHTTTC
T ss_pred HHHH-cccccccch-HHHHH---HHH--------HhcccCCCCHHHHHhcCC
Confidence 9987 565433221 13332 222 677889999998887764
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=4.8e-21 Score=179.43 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
+...++..|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 447889999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDI-------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLK 182 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~ 182 (687)
+...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999998 66999999999999999999999999999999 99999999999977
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (687)
.| ...++++....+.... ...+......+.+++|+.+++++++. .|.+..+...++.+..
T Consensus 166 ~~-----~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~l----~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 166 NG-----ADVLRKATPLASSNKE----KYASEKAKADAAFKKAVDYLGEAVTL----SPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HH-----HHHHHHHGGGTTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHT
T ss_pred HH-----HHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHH
Confidence 65 4456666666655532 23455566778899999999999999 7777777777776643
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=6.5e-21 Score=198.48 Aligned_cols=217 Identities=13% Similarity=0.041 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY-EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 194 (687)
+.+++++..++......|.+..+++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467888899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHc---------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc--------
Q 005632 195 EYLKVHPSDADLSVIDLLVAILMEN---------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-------- 257 (687)
Q Consensus 195 ~~~~~~p~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 257 (687)
++++.+|+ . .++..+|.++... |++++|+..|+++++. .|....++..+|.++...
T Consensus 162 ~al~~~p~-~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTHCKN-K--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTTCCC-H--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhCCC-H--HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 99999998 3 4899999999999 9999999999999999 888899999999999999
Q ss_pred CCHHHHHHHHHHHhhhCch--hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 005632 258 GNMEKAEILFADLQWKNAI--DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335 (687)
Q Consensus 258 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 335 (687)
|++++|+..|++++...|. .++.++..+|.++...|++++|+..|++++.. .|+++.++..++.++...|++++|+.
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998872 48999999999999999999999999999988 89999999999999999999999999
Q ss_pred HHHHH
Q 005632 336 FFYKA 340 (687)
Q Consensus 336 ~~~~a 340 (687)
.+.+.
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 88776
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=6.8e-21 Score=205.41 Aligned_cols=173 Identities=19% Similarity=0.208 Sum_probs=150.2
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 108 (687)
..|.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 005632 189 SIGILEEYLKVHP 201 (687)
Q Consensus 189 A~~~~~~~~~~~p 201 (687)
|++.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 8888888887654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=8.2e-21 Score=204.80 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=165.6
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
..|++++++..+|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~ 222 (687)
|.++..+|++++|++.|+++++++|++..++.++|.++...|++++|+..|+++++++|++.. ++..+|.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD--AYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHhhhhhHHHhcccH
Confidence 999999999999999999999999999999999999999999999999999999999999876 799999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 005632 223 EKTLQHIEHAQIVR 236 (687)
Q Consensus 223 ~~A~~~~~~~~~~~ 236 (687)
++|++.++++++..
T Consensus 162 ~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 162 TDYDERMKKLVSIV 175 (723)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999873
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=3.2e-20 Score=173.77 Aligned_cols=212 Identities=15% Similarity=0.058 Sum_probs=184.4
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 143 (687)
+.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55789999999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CCcHHHHHHHHH
Q 005632 144 SFYVEIGDYEKAAESYEQIQKLFPDNV-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPS--DADLSVIDLLVA 214 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~~la~ 214 (687)
.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ +.. ++..+|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD--ALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH--HHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH--HHHHHHH
Confidence 999999999999999999999999998 66999999999999999999999999999998 654 7899999
Q ss_pred HHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 215 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
++...|+. .++++... .+.... ...+......+.+++|+..+++++...|. ++.+...++.+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~----~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPL----ASSNKE--KYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGG----TTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhc----ccCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 99877653 34455444 222221 22344455677899999999999999885 7888887777653
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=2.6e-20 Score=189.53 Aligned_cols=310 Identities=12% Similarity=0.040 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP---KDSALW--KQL--LTFAVQKGDTAQAM-----------YYIRQAI 129 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a~ 129 (687)
......-...++..+++++|...++.+.+.-+ .+.... +.+ .+.....++++.+. ..++++-
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 34445555667789999999999988865422 234333 222 22233334444444 5555543
Q ss_pred HhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 130 RAEPKDIS------LRIHLASFYVEIGDYEKAAESYEQIQKL---FPD---NVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 130 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
. .|.... .++.+|.++...|++++|+..|++++++ .++ ...++..+|.++...|++++|+..+++++
T Consensus 92 ~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 92 K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 333322 3445999999999999999999999987 233 45789999999999999999999999999
Q ss_pred HhCCCCCc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 198 KVHPSDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADL 270 (687)
Q Consensus 198 ~~~p~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 270 (687)
+..+.... ..++..+|.++...|++++|+.++++++...+.. .+....++..+|.++...|++++|+.+++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 98655443 2468899999999999999999999999885432 2334468899999999999999999999999
Q ss_pred hh-----hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc----CCCcHHHHHHHHHHHHHhhc---HHHHHHHHH
Q 005632 271 QW-----KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA----GTDNGYLYLKLAECYLSLKE---RAHAIMFFY 338 (687)
Q Consensus 271 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~ 338 (687)
+. ...+....++..+|.++...|++++|+.++++++... ++.....+..+|.++...|+ +.+|+..++
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 88 4523478899999999999999999999999988752 23333446779999999999 888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632 339 KALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 379 (687)
Q Consensus 339 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 379 (687)
+. ...|....++..+|.++...|++++|..+++++++...
T Consensus 331 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 331 SK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 76 44455567888999999999999999999998776543
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=4.7e-20 Score=176.55 Aligned_cols=174 Identities=19% Similarity=0.203 Sum_probs=125.0
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SAL 104 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 104 (687)
+.+...++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.+++..|++++|+..|++++...|++ +.+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4466778888888888888888888888888888887 7888888888888888888888888888887743 567
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q 005632 105 WKQLLTFAVQ--------KGDTAQAMYYIRQAIRAEPKDISLR-----------------IHLASFYVEIGDYEKAAESY 159 (687)
Q Consensus 105 ~~~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~ 159 (687)
++.+|.++.. .|++++|+..|++++..+|+++.+. +.+|.+|...|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888 8888888888888888888776554 44555555555555555555
Q ss_pred HHHHHhCCC---CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCC
Q 005632 160 EQIQKLFPD---NVDATKTGAQLFLKC----------GQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 160 ~~~~~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 204 (687)
+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 555555554 234555555555544 555555555555555555543
No 70
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=2e-20 Score=184.02 Aligned_cols=381 Identities=12% Similarity=0.053 Sum_probs=198.7
Q ss_pred HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 158 (687)
Q Consensus 79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 158 (687)
...|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3556677777777766 33457777777777777777777777653 3555677777777777888888887
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc
Q 005632 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS 238 (687)
Q Consensus 159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 238 (687)
++.+.+..+ ++.+...++.+|.+.|++.++.++++ .|+.. .|..+|..+...|.|++|..+|.++
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~---a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GPNNA---HIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-----CC-------------------CTTTHHHHHHHT------
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 777776433 35666777777777888877776664 24332 6778888888888888888888865
Q ss_pred CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHH
Q 005632 239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL 318 (687)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 318 (687)
..+..++.++.++|++++|++.++++ .++..|..++.++...|+++.|..+...+. .+|.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 24677888888888898898888887 267888999999999999999977665422 2344455
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHhcCCCCcCCc-----ccCCCCCCChhh
Q 005632 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE--AKEEEAITLLSPPKDLDS-----LDMNSDKSNPWW 391 (687)
Q Consensus 319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~ 391 (687)
.+..+|.+.|++++|+.++++++.+++.+..++..++.++.+- ++..+.++.|...++..| ....
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~-------- 283 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH-------- 283 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH--------
Confidence 6888999999999999999999999999999999999888764 688999999999988877 5543
Q ss_pred hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchh
Q 005632 392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKS 471 (687)
Q Consensus 392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (687)
+|..+..+|...++++.|+..+..-...+.+-+
T Consensus 284 ----~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~------------------------------------------- 316 (449)
T 1b89_A 284 ----LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG------------------------------------------- 316 (449)
T ss_dssp ----CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH-------------------------------------------
T ss_pred ----HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH-------------------------------------------
Confidence 778999999999999999765443322211100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHH
Q 005632 472 ELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEE 551 (687)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e 551 (687)
..+. ++..+.+.+++...+..|. +...+
T Consensus 317 -~f~~-------------------------------------------------~~~kv~n~elyYkai~fyl--~~~p~ 344 (449)
T 1b89_A 317 -QFKD-------------------------------------------------IITKVANVELYYRAIQFYL--EFKPL 344 (449)
T ss_dssp -HHHH-------------------------------------------------HHHHCSSTHHHHHHHHHHH--HHCGG
T ss_pred -HHHH-------------------------------------------------HHhchhHHHHHHHHHHHHH--hcCHH
Confidence 0000 1234555667777666666 66666
Q ss_pred HHHHHHHHHH--HhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632 552 ASEIINLSMR--LAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK 622 (687)
Q Consensus 552 A~~~l~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 622 (687)
++.-+..++. +++. . .....-..|+..-...+++.+. +-++..+-..+..++...++
T Consensus 345 ~l~~ll~~l~~~ld~~-------r-----~v~~~~~~~~l~l~~~yl~~v~--~~n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 345 LLNDLLMVLSPRLDHT-------R-----AVNYFSKVKQLPLVKPYLRSVQ--NHNNKSVNESLNNLFITEED 403 (449)
T ss_dssp GHHHHHHHHGGGCCHH-------H-----HHHHHHHTTCTTTTHHHHHHHH--TTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCcH-------H-----HHHHHHHcCCcHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhhh
Confidence 7777777762 2222 1 1233346688888888887775 34677888899999999888
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=1.6e-18 Score=175.67 Aligned_cols=304 Identities=12% Similarity=0.019 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP-----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SA 103 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 103 (687)
...+..|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678889999999999999999999877543 267888999999999999999999998875432 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CH
Q 005632 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-----NV 170 (687)
Q Consensus 104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~ 170 (687)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+. ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 46788999999999999999999988764 233456778899999999999999999999988764 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--Cc-HHHH--HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSD--AD-LSVI--DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 245 (687)
.++..+|.++...|++++|...+++++...+.. .. +... ...+.++...|++++|..++++++...+........
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 567788889999999999999999888764332 11 1111 134455778889999988888877652211112233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHH
Q 005632 246 LKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKL 320 (687)
Q Consensus 246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 320 (687)
.+..++.++...|++++|...+++++...+. ....++..++.++...|++++|...+++++....+ ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccH
Confidence 5667888888888888888888887654321 23346777888888888888888888887765211 011
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 321 AECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 321 a~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
...+...| +.....++..+...|.
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 12333344 5666677777777765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=184.13 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=149.4
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc
Q 005632 26 SKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97 (687)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 97 (687)
.....|..+..++..|..++..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455677888899999999999999999999999984 5667889999999999999999999999999877
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 98 --------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEIGDYEKAAESYEQ 161 (687)
Q Consensus 98 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 161 (687)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567788899999999999999999999998864 44566788899999999999999999999
Q ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 162 IQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 162 ~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
++.. .|....++..+|.++...|++++|+..+++++...
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9887 55566778888888988999999998888888753
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.3e-20 Score=181.39 Aligned_cols=256 Identities=14% Similarity=0.102 Sum_probs=145.1
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--- 132 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 132 (687)
+|..+.++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777763 45555666677777777777777777777776652
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632 133 -----PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199 (687)
Q Consensus 133 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 199 (687)
|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334556666666666666666666666666553 333445555666666666666666666665555
Q ss_pred --------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 200 --------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 200 --------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.|.. ..++..+|.++...|++++|+.++++++...+. .. . +......
T Consensus 183 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~-----~-------~~~~~~~------- 237 (311)
T 3nf1_A 183 YQTKLGPDDPNV--AKTKNNLASCYLKQGKFKQAETLYKEILTRAHE----RE-----F-------GSVDDEN------- 237 (311)
T ss_dssp HHHTSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HH-----H-------C-------------
T ss_pred HHHHhCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hc-----C-------CCCCcch-------
Confidence 1111 124455555555555555555555555544110 00 0 0000000
Q ss_pred hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632 272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 346 (687)
Q Consensus 272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 346 (687)
.........+...+..+...+.+.+|...+..+... .|..+.++..+|.+|...|++++|+.+|++++++.|.
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 -KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000012333444455556667777788888777765 6778889999999999999999999999999988775
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=6.5e-19 Score=178.65 Aligned_cols=312 Identities=12% Similarity=0.010 Sum_probs=230.2
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHH----HcCChHHHH---------HHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP---NLPETYNTLGLAHS----ALGNHKSAF---------DFYVIA 94 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~----~~g~~~~A~---------~~~~~a 94 (687)
++.+...+..=..+...+++++|..+++++....+ .+..+++..+...+ ..+.+..+. ..++++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 45677888888888999999999999999866432 23444432222222 122322222 444443
Q ss_pred hccC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 95 AHLS-PKD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 95 l~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 163 (687)
-... +.+ ...++..|..+...|++++|+..|++++...+ ....++..+|.++...|+++.|+.++++++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3221 111 12466789999999999999999999988632 235678899999999999999999999999
Q ss_pred HhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632 164 KLFPD-------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHA 232 (687)
Q Consensus 164 ~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~ 232 (687)
+..+. ...++..+|.++...|++++|+..++++++..+... ...++..+|.++...|++++|+.+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87543 245678999999999999999999999988643221 1246788999999999999999999999
Q ss_pred HHHhcc-CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc----hhhHHHHHHHHHHHHhcCC---hHHHHHHHHH
Q 005632 233 QIVRFS-GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADLITEVADTLMSLGH---SNSALKYYHF 304 (687)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 304 (687)
+..... ..+....++..+|.++...|++++|+.++++++...+ +.....+..++.++...++ +.+|+..+++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 985321 2555678889999999999999999999999877532 1234456777888888888 8888888876
Q ss_pred hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (687)
Q Consensus 305 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (687)
... .+....++..+|.+|...|++++|..+|+++++..
T Consensus 329 ~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 431 35566778889999999999999999999988764
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=2.4e-19 Score=171.57 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=159.8
Q ss_pred HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 005632 61 VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-- 135 (687)
Q Consensus 61 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 135 (687)
...+|.++..++.+|..++..|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999998 8999999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHH
Q 005632 136 -ISLRIHLASFYVE--------IGDYEKAAESYEQIQKLFPDNVDAT-----------------KTGAQLFLKCGQTARS 189 (687)
Q Consensus 136 -~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A 189 (687)
+.+++.+|.++.. .|++++|+..|+++++.+|+++.+. +.+|.+|...|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6789999999999 9999999999999999999886555 6677778888888888
Q ss_pred HHHHHHHHHhCCCCCc-HHHHHHHHHHHHHc----------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632 190 IGILEEYLKVHPSDAD-LSVIDLLVAILMEN----------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (687)
+..|+++++..|++.. ..++..+|.++... |++++|+..|++++..+| +.+....+...++.++...+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHHH
Confidence 8888888877777542 24677777777766 777777777777777722 22233444555555555555
Q ss_pred CHHH
Q 005632 259 NMEK 262 (687)
Q Consensus 259 ~~~~ 262 (687)
+++.
T Consensus 247 ~~~~ 250 (261)
T 3qky_A 247 ELEG 250 (261)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 4433
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=1.2e-18 Score=166.63 Aligned_cols=252 Identities=9% Similarity=0.015 Sum_probs=205.4
Q ss_pred ChhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
+++....+.........|.+ ++|+..+.+++..+|++..+|...+.++...| ++++++.++..++..+|++..+|..
T Consensus 29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 56778888888888888887 58999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 108 LLTFA----VQK---GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE--KAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 108 la~~~----~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
.+.++ ... +++++++.++.++++.+|.+..+|...+.+....|.++ ++++.+.++++.+|.+..+|...+.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99998 666 78999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred HHHHcCC------hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632 179 LFLKCGQ------TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK-TLQHIEHAQIVRFSGKELPLKLKVKAG 251 (687)
Q Consensus 179 ~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (687)
++...+. ++++++++++++..+|.+.. +|+.++.++...|+..+ ...++.+++.. ....+.+..++..++
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la 265 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYLLGIHERFDRSITQLEEFSLQFVDL-EKDQVTSSFALETLA 265 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhcCCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHH
Confidence 9988887 88888888888888888875 78888888888777544 33444544443 111244556666667
Q ss_pred HHHHHcCCHHHHHHHHHHHhh-hCchhhHHHHHHHH
Q 005632 252 ICYLRLGNMEKAEILFADLQW-KNAIDHADLITEVA 286 (687)
Q Consensus 252 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~la 286 (687)
.++.+.|+.++|+.+|+.+.. .+|. ....|...+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 777666777777777777665 3442 555555444
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=3.5e-18 Score=173.11 Aligned_cols=278 Identities=15% Similarity=0.088 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------I 136 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~ 136 (687)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35677788888899999999999999888776542 256778888888999999999999888765432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---
Q 005632 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLF--------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD--- 205 (687)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--- 205 (687)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 336778888888889988888888888764 233456777888888888888888888888887665321
Q ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc-hHHHH--HHHHHHHHHcCCHHHHHHHHHHHhhhCchh---hH
Q 005632 206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL-PLKLK--VKAGICYLRLGNMEKAEILFADLQWKNAID---HA 279 (687)
Q Consensus 206 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~ 279 (687)
..++..+|.++...|++++|...+++++......... ..... ...+.++...|++++|...+++++...+.. ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 2356778888888888888888888887764321111 11111 133445667788888888777776543321 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632 280 DLITEVADTLMSLGHSNSALKYYHFLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE 345 (687)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 345 (687)
..+..++.++...|++++|...+++++.... + ....++..+|.++...|++++|...+++++...+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2456667777777777777777776654311 1 1223566667777777777777777777766543
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=2.6e-19 Score=164.34 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHcCChHHHHHHHHHHhc
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNT----------------LGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
++..++.+|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999 88888888999999999999888
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHH
Q 005632 97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD--YEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 97 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...| ...+++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 161 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY 161 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence 8888888888889988888999999999999988888888888888888876654 4456667776653322 224567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
.+|.++...|++++|+..|+++++++|+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 78888888888888888888888888864
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.82 E-value=3.2e-16 Score=166.93 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=311.0
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 005632 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD---TAQAMYYI 125 (687)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 125 (687)
...+-+..|++.+..+|.+...|..+.......++++.+...|++++...|.....|...+......|+ ++.+..+|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------H
Q 005632 126 RQAIRAEP--KDISLRIHLASFYVEIGDY--------EKAAESYEQIQKL----FPDNVDATKTGAQLFL---------K 182 (687)
Q Consensus 126 ~~a~~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~ 182 (687)
++++...| .++..|..........++. +.....|++++.. ++.+..+|........ .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999884 6788888877766665553 3344788888764 5666777776665543 3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-------------HHHcchHHHHHHHHHHHHHHhc-------cCC--
Q 005632 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAI-------------LMENNAYEKTLQHIEHAQIVRF-------SGK-- 240 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~-------------~~~~~~~~~A~~~~~~~~~~~~-------~~~-- 240 (687)
+++.+.+..+|++++.. |......+|...... -....+|+.|...+........ ...
T Consensus 207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 45678899999999964 544322233221111 1112345555555544322211 000
Q ss_pred ------C-------chHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH-
Q 005632 241 ------E-------LPLKLKVKAGICYLRLG-------NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL- 299 (687)
Q Consensus 241 ------~-------~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 299 (687)
| .....|..........+ ........|++++...|. .+.+|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 11233333333222211 123456778888888775 8888888888888888888886
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHH
Q 005632 300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-----------ED-----------NIDARLTLASL 357 (687)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~ 357 (687)
.+|++++.. .|.+..+|+.++.+....|+++.|...|++++... |. ...+|...+.+
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 888888875 68888888888888888889989998888888752 42 34567778888
Q ss_pred HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhhhhHHHhhhhhh
Q 005632 358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM-PEDFVDAIFPLVCESLCVEALRQKVKV 436 (687)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 436 (687)
..+.|+.+.|..+|.++++..|.... .++...+.+....|+ .+.|.++|+..++..+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~-----------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---------- 502 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTP-----------DIYLENAYIEYHISKDTKTACKVLELGLKYFAT---------- 502 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCT-----------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----------
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCh-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----------
Confidence 88888888888888888766222211 356666666666554 78888888888876532
Q ss_pred hhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632 437 KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE 516 (687)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (687)
T Consensus 503 -------------------------------------------------------------------------------- 502 (679)
T 4e6h_A 503 -------------------------------------------------------------------------------- 502 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHH
Q 005632 517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCA 596 (687)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 596 (687)
...+...++..+...|+.+.|..++++++...+. .+....++......-...|+.+.+..+.
T Consensus 503 ---------------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 503 ---------------DGEYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp ---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1123345666677788899999999998875542 1234556656666666779999999999
Q ss_pred HHHHhhCCCCchhhHH
Q 005632 597 KYILQLHPYSLSAWNC 612 (687)
Q Consensus 597 ~~~l~~~p~~~~~~~~ 612 (687)
+.+++..|+++.+-.+
T Consensus 565 ~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 565 KRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHSTTCCHHHHH
T ss_pred HHHHHhCCCCcHHHHH
Confidence 9999999988655443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=9.5e-19 Score=157.74 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
....++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34445566666666777777777777666666666666666777776777777777777776666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66677777777777666666666666666666666667777777777666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCC
Q 005632 193 LEEYLKVHPSDA 204 (687)
Q Consensus 193 ~~~~~~~~p~~~ 204 (687)
++++++..|++.
T Consensus 167 ~~~~~~~~~~~~ 178 (186)
T 3as5_A 167 FKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHcCCCch
Confidence 666666665554
No 81
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5.5e-20 Score=180.83 Aligned_cols=324 Identities=13% Similarity=0.136 Sum_probs=171.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (687)
...|++++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4678899999999998 34579999999999999999999999764 4666899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
++.+.+..+ ++.+...++.+|.+.|++.++.+.++. | +..++..+|..+...|.+++|..+|.++ .
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~ 149 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------T
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------h
Confidence 999988544 477788899999999999999888852 4 4469999999999999999999999976 1
Q ss_pred cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHH
Q 005632 205 DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITE 284 (687)
Q Consensus 205 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (687)
.|..++.++...|++++|++.+.++. ++.+|...+.++...|+++.|..+...+. ..| +-...
T Consensus 150 ---n~~~LA~~L~~Lg~yq~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a----d~l~~ 212 (449)
T 1b89_A 150 ---NFGRLASTLVHLGEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA----DELEE 212 (449)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH----HHHHH
T ss_pred ---hHHHHHHHHHHhccHHHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH----hhHHH
Confidence 37799999999999999999999982 45778888999999999999987777643 433 33456
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHH
Q 005632 285 VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS--LKERAHAIMFFYKALDRFE-----DNIDARLTLASL 357 (687)
Q Consensus 285 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~ 357 (687)
++..|.+.|.+++|+.+++.++.. ++....++..+|.+|.+ .++..+.++.|...+.+.| .+...|..+..+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~l-e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988 68899999999988875 5678888888888888888 788899999999
Q ss_pred HHHcCCHHHHHHhcCCCCcC------------CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 358 LLEEAKEEEAITLLSPPKDL------------DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 358 ~~~~g~~~~A~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
|...++++.|+..+-..... .+. +.++++.....|. +.....+..+...+...
T Consensus 292 y~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~------------n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ 356 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA------------NVELYYRAIQFYL--EFKPLLLNDLLMVLSPR 356 (449)
T ss_dssp HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS------------STHHHHHHHHHHH--HHCGGGHHHHHHHHGGG
T ss_pred HHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchh------------HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc
Confidence 99999999999876544322 222 2368888888887 55566666666666443
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=3.6e-20 Score=159.84 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
|..+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES-YEQIQKLFPDNVDATKTGAQLFLKCG 184 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~~~g 184 (687)
|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555444433 34555555555555555555554444
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.81 E-value=1.4e-16 Score=169.75 Aligned_cols=472 Identities=10% Similarity=0.018 Sum_probs=317.6
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESY 159 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 159 (687)
...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+......|+ ++.+..+|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999999999998888888 99999999
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCh----HHH----HHHHHHHHHhCCC-CCc-HHHHHHHHHHHH---------H
Q 005632 160 EQIQKLFP--DNVDATKTGAQLFLKCGQT----ARS----IGILEEYLKVHPS-DAD-LSVIDLLVAILM---------E 218 (687)
Q Consensus 160 ~~~~~~~p--~~~~~~~~la~~~~~~g~~----~~A----~~~~~~~~~~~p~-~~~-~~~~~~la~~~~---------~ 218 (687)
++++...| .++..|..........++. +++ ...|++++..-+. +.. ..+|........ .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999884 5777888777766666654 333 4677777765433 222 236666666654 2
Q ss_pred cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632 219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA 298 (687)
Q Consensus 219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 298 (687)
+++.+.+..+|++++.. | ......++......-...+.. .+...+.. ...+|..|
T Consensus 207 q~~~~~~R~iy~raL~i-P--~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e---------------------~~~~y~~A 261 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-P--MDCLESMWQRYTQWEQDVNQL-TARRHIGE---------------------LSAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-C--CSSHHHHHHHHHHHHHHHCTT-THHHHHHH---------------------HHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC-c--cHHHHHHHHHHHHHHHhcCcc-hHHHHHHH---------------------hhHHHHHH
Confidence 45677788888888854 2 111122222221111111110 01111111 01122333
Q ss_pred HHHHHHh------hhccC------------C-----C--cHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHhcCC
Q 005632 299 LKYYHFL------ETNAG------------T-----D--NGYLYLKLAECYLSLK-------ERAHAIMFFYKALDRFED 346 (687)
Q Consensus 299 ~~~~~~~------~~~~~------------~-----~--~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~ 346 (687)
...+... +.... | . ....|......-...+ ..+.....|++++...|.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 3333221 11000 1 0 1234444433322221 134567889999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632 347 NIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425 (687)
Q Consensus 347 ~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 425 (687)
+++.|+..+..+...|+.++|. .+|++++...|.+. .++...+.+....|++++|.+.|.+++....
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~------------~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA------------VLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 99999998888654 3778899999999999999999999987642
Q ss_pred hhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 005632 426 CVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWH 505 (687)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (687)
..-.. . .. ..|... .....
T Consensus 410 ~~~~~---~-----------~~------~~p~~~------------~~~~~----------------------------- 428 (679)
T 4e6h_A 410 LDLAA---L-----------ME------DDPTNE------------SAINQ----------------------------- 428 (679)
T ss_dssp HHHHH---H-----------HH------HSTTCH------------HHHHH-----------------------------
T ss_pred HHhhh---h-----------hh------ccCcch------------hhhhh-----------------------------
Confidence 11000 0 00 000000 00000
Q ss_pred CCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcc
Q 005632 506 SDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYD 585 (687)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (687)
.......+.+.++.+..+.|..+.|..++.+|+...+.. ...+....+.+-+.
T Consensus 429 ----------------------~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 429 ----------------------LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYH 481 (679)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHT
T ss_pred ----------------------hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHH
Confidence 001122355677778888899999999999998752211 12333333444444
Q ss_pred c-CCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCC---CCCccceeccccccccch
Q 005632 586 S-TDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKD---CVPPIIISGHQFTMASHH 661 (687)
Q Consensus 586 ~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~~g~~~~~~~~~ 661 (687)
. ++.+.|..++...++..|+++..|..++......|+ ...+...+.+++...|+ ...++......-...|+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~----~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE----ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 4 558999999999999999999999999999999998 78999999999998884 344555666666678999
Q ss_pred HHHHHHHHHHHhhCCCChhhhh
Q 005632 662 QDAARCYLEAYKLLPENPLINL 683 (687)
Q Consensus 662 ~~A~~~~~~a~~~~P~~p~~~l 683 (687)
+.+...+.++.+..|++|-+.+
T Consensus 558 ~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 558 NSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHH
Confidence 9999999999999999876654
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=1.3e-19 Score=156.38 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=134.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 152 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 152 (687)
.||.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.++..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632 153 EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI-LEEYLKVHPSDADLSVIDLLVAILMENNA 221 (687)
Q Consensus 153 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~~~la~~~~~~~~ 221 (687)
++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++. ++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~--~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA--VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 5999999999886 68888888887775
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=2.3e-19 Score=195.29 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=118.2
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHh--------ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA--------HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 62 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 133 (687)
..+|+++.+++..| ...|++++|+..+++++ ..+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 55666666655555 55666666666666666 55666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 005632 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLV 213 (687)
Q Consensus 134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la 213 (687)
++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++.. +++.+|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~--a~~~lg 541 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS--AAFGLA 541 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH--HHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH--HHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666 6666666666666554 566666
Q ss_pred HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC
Q 005632 214 AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN 259 (687)
Q Consensus 214 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (687)
.++...|++++|+..|+++++. +|....+++.+|.++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPT----SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTT----STTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhccc----CcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666 56666666666666655443
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=1.7e-17 Score=168.13 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC---chH
Q 005632 172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---LPL 244 (687)
Q Consensus 172 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 244 (687)
.++..|..+...|++++|+..+++++...+... ...++..+|.++...|++++|+.++++++..++.... ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 455667777777777777777777776533221 1235667777777777777777777777776543222 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc----cCCCcHH
Q 005632 245 KLKVKAGICYLRLGNMEKAEILFADLQWKN-----AIDHADLITEVADTLMSLGHSNSALKYYHFLETN----AGTDNGY 315 (687)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 315 (687)
.++..+|.++...|++++|+..+++++... +.....++..+|.++...|++++|+.++++++.. ..|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 566777777888888888887777776532 2234567788888888888888888888888762 2566688
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCC---HHHHHHhcCCCCcCCcccCCCCCC
Q 005632 316 LYLKLAECYLSLKERAHAIMFFYKALDRFE-----DNIDARLTLASLLLEEAK---EEEAITLLSPPKDLDSLDMNSDKS 387 (687)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~ 387 (687)
++..+|.++...|++++|+.++++++++.+ ........++.++...|+ +.+|+.++++.... +
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~-~-------- 333 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH-A-------- 333 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH-H--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh-h--------
Confidence 899999999999999999999999998844 334556677888888888 88888888863221 1
Q ss_pred ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
....++..+|.+|...|++++|...+.+.++..
T Consensus 334 ----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 334 ----YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 123578899999999999999999999988654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=2.1e-18 Score=167.62 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005632 75 GLAHSALGNHKSAFDFYVIAAHLSPK------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHL 142 (687)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l 142 (687)
|.+|...|++++|+.+|.+++.+.+. ...++..+|.+|...|++++|+.+|++++.+.|.. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555566666666666666555321 13455566666666666666666666665554322 2345555
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-----HHHH
Q 005632 143 ASFYVEI-GDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-----SVID 210 (687)
Q Consensus 143 a~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~~ 210 (687)
|.+|... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+..|++++...|.+... .++.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5555553 55555555555555554432 2344455555555555555555555555555443321 1234
Q ss_pred HHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 211 LLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 211 ~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.+|.++...|++++|+..|++++.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555555555444
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=3e-17 Score=157.06 Aligned_cols=237 Identities=7% Similarity=-0.039 Sum_probs=177.8
Q ss_pred HcCC-hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---
Q 005632 80 ALGN-HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG--DTAQAMYYIRQAIRAEPKDISLRIHLASFY----VEI--- 149 (687)
Q Consensus 80 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~----~~~--- 149 (687)
..|. .++|+..+.+++.++|++..+|...+.++...| ++++++.++.+++..+|.+..+|...+.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3444 468999999999999999999999999999999 999999999999999999999999999888 666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch------
Q 005632 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA--RSIGILEEYLKVHPSDADLSVIDLLVAILMENNA------ 221 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~------ 221 (687)
+++++++..+.++++.+|.+..+|...+.++...|.++ +++..++++++.+|.+.. +|...+.+....+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--AW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccccchhhh
Confidence 78999999999999999999999999999999999988 999999999999998875 78888888888776
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK-AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300 (687)
Q Consensus 222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 300 (687)
++++++++++++.. +|.+..+|..++.++...|+..+ ....+.+++...
T Consensus 202 ~~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-------------------------- 251 (306)
T 3dra_A 202 IDEELNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-------------------------- 251 (306)
T ss_dssp HHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG--------------------------
T ss_pred HHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc--------------------------
Confidence 77777777777777 66666666666666666665333 223333333221
Q ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 005632 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD-RFEDNIDARLTLA 355 (687)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la 355 (687)
...+.++.++..++.++...|+.++|+++|+.+.+ .+|-....|...+
T Consensus 252 -------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 252 -------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp -------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 00244455555555555555555555555555554 4555555554443
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=4.4e-18 Score=158.41 Aligned_cols=186 Identities=12% Similarity=0.035 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH---HHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---LWK 106 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 106 (687)
....++.+|..++..|+|++|+..|++++...|.++ .+++.+|.+++..|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345688999999999999999999999999998764 68999999999999999999999999999998764 788
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 107 QLLTFAVQ------------------KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 107 ~la~~~~~------------------~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
.+|.++.. .|++++|+..|+++++.+|+++.+...+..+....+ .
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------R 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------H
Confidence 89998876 456666666666666666666543321111000000 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.......+|.++...|++++|+..|+++++..|+++. ..++..+|.++...|++++|+..++++...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112245666777777777777777777777766542 135666777777777777777777766655
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1.2e-18 Score=189.69 Aligned_cols=187 Identities=13% Similarity=-0.007 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 45 YAYGNFEQAISLLKEVV--------RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
+..|++++|++.|++++ +.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66777777777777777 7777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++..+++++|.++...|++++|+..|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77778777777777777777777777777777777777 77777777777777777777777777777777777777777
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHHHHHHH
Q 005632 197 LKVHPSDADLSVIDLLVAILMENNAYEKT-LQHIEHAQI 234 (687)
Q Consensus 197 ~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~ 234 (687)
++.+|++.. ++..+|.++...++.+++ ...++++..
T Consensus 561 l~l~P~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 561 PPTSRHFTT--ARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp CTTSTTHHH--HHHHHHHHTC-------CCHHHHHHHHH
T ss_pred cccCcccHH--HHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 777777654 566777777666654433 344444443
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=1.1e-17 Score=150.65 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=160.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~ 226 (687)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998764 7889999999999999999
Q ss_pred HHHHHHHHHhc
Q 005632 227 QHIEHAQIVRF 237 (687)
Q Consensus 227 ~~~~~~~~~~~ 237 (687)
.++++++...+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 99999998844
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=2.2e-18 Score=158.12 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ----------------LLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
+++.++..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999988888888 77777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCCCcHHH
Q 005632 131 AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ--TARSIGILEEYLKVHPSDADLSV 208 (687)
Q Consensus 131 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 208 (687)
.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...| .. .+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK--MQ-YA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH--HH-HH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc--hh-HH
Confidence 7777777777777777777777777777777777777777777777777665543 3344455555432221 11 24
Q ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 209 IDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 209 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
++.+|.++...|++++|+..|+++++.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 555666666667777777777777666
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=4.1e-18 Score=165.16 Aligned_cols=224 Identities=16% Similarity=0.113 Sum_probs=160.1
Q ss_pred HhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQL 108 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 108 (687)
...|++++|+..|+++++. +|..+.++..+|.++...|++++|+.+|++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888888873 3557788999999999999999999999999977 36667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDA 172 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~ 172 (687)
|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999987 4556778999999999999999999999999988 6666788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH---hccCC
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKV---------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV---RFSGK 240 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 240 (687)
+..+|.++...|++++|+..+++++.. .+.... .+..++..+...+....+.. +..+... .....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP--IWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC--HHHHHHHHHHTTCCCCC-------------CCCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH--HHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCC
Confidence 889999999999999999999999876 233332 44555555444433322222 1111111 11122
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
+....++..+|.++...|++++|+.++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444555555555555555555555544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=5.6e-18 Score=164.65 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPN------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SAL 104 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 104 (687)
+-..|.++...|++++|+..|++++...+. .+.++..+|.+|...|++++|+.+|++++.+.|.. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334477888999999999999999987432 26789999999999999999999999999987643 467
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 005632 105 WKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD------ 171 (687)
Q Consensus 105 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------ 171 (687)
+..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|+++++..|++..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88999999996 99999999999999988754 467899999999999999999999999999887643
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHH--HcchHHHHHHHHHHHHHH
Q 005632 172 -ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILM--ENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 172 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~la~~~~--~~~~~~~A~~~~~~~~~~ 235 (687)
++..+|.++...|++++|+..|++++.++|+.... ..+..++..+. ..+++++|+..|++++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 67899999999999999999999999999986542 12334444443 346677777777776655
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=5.7e-16 Score=148.72 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=188.9
Q ss_pred HHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhccCCCCHHH
Q 005632 36 KMLGEASLQYAYGNFE-QAISLLKEVVRLSPNLPETYNTLGLAHSALGN----------HKSAFDFYVIAAHLSPKDSAL 104 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~ 104 (687)
.+..........|+++ +|+..+.+++..+|++..+|...+.+....+. +++++.++..++..+|.+..+
T Consensus 31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~a 110 (331)
T 3dss_A 31 SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT 110 (331)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHH
Confidence 3344455556788887 79999999999999999999999999988776 689999999999999999999
Q ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 105 WKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-YEKAAESYEQIQKLFPDNVDATKTGAQLFL 181 (687)
Q Consensus 105 ~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 181 (687)
|...+.++...|+ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++.
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999994 8999999999999999999999999999999998 699999999999999999999999999988
Q ss_pred Hc--------------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-----------chHHHHHHHHHHHHHHh
Q 005632 182 KC--------------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-----------NAYEKTLQHIEHAQIVR 236 (687)
Q Consensus 182 ~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~ 236 (687)
.. +.++++++++.+++..+|++.. +|+.+..++... +.++++++.+.++++.
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 87 4588999999999999999876 676665555554 4567777777777777
Q ss_pred ccCCCchHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhCc
Q 005632 237 FSGKELPLKLKVKAGICYL---RLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~ 275 (687)
.|.....+..++.+.. ..|..++....+.+++..+|
T Consensus 268 ---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 268 ---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp ---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4444443333332221 13445555556666555555
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=8.1e-18 Score=139.87 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=69.6
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
++|+.++.+..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45555555555666666666666666666666666666566666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666666665555555543
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=5.1e-18 Score=151.25 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH-
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV- 113 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 113 (687)
..++..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 34667778888888888888888888888888888888888888888888888888888887777 6665555554432
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--VDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 191 (687)
..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..++.++...|+.++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333456777777777777777777777777777777777777777777777764 4577777777777777777777
Q ss_pred HHHHHHH
Q 005632 192 ILEEYLK 198 (687)
Q Consensus 192 ~~~~~~~ 198 (687)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=5.6e-18 Score=150.96 Aligned_cols=171 Identities=13% Similarity=0.048 Sum_probs=150.8
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 143 (687)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4556678899999999999999999999999999999999999999999999999999999999999999 887766666
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632 144 SFYV-EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 144 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~ 222 (687)
.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.....++..++.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 5533 333445689999999999999999999999999999999999999999999999875445788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005632 223 EKTLQHIEHAQIV 235 (687)
Q Consensus 223 ~~A~~~~~~~~~~ 235 (687)
++|+..|++++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999998764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=4.4e-17 Score=157.58 Aligned_cols=165 Identities=15% Similarity=0.055 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+...++..|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555555555555444444333333344444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--VDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~ 190 (687)
...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 444444444455555555555555555555555555555555555555555554444 444444455554445544444
Q ss_pred HHHHHHH
Q 005632 191 GILEEYL 197 (687)
Q Consensus 191 ~~~~~~~ 197 (687)
..|++++
T Consensus 276 ~~~r~al 282 (287)
T 3qou_A 276 SXYRRQL 282 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=6.7e-17 Score=150.38 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS---LRI 140 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 140 (687)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999988876 478999999999999999999999999999998864 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--------------
Q 005632 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-------------- 206 (687)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------- 206 (687)
.+|.++...|.. ....+..++..+...|++++|+..|+++++..|++...
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 899888764311 01112223333333444444444444444444444321
Q ss_pred -HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632 207 -SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI 276 (687)
Q Consensus 207 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 276 (687)
.....+|.++...|++++|+..|+++++.+|. .+....++..+|.++...|++++|+..++.+....|.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 12357899999999999999999999999432 2334588999999999999999999999998877664
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=2.6e-17 Score=159.48 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=129.8
Q ss_pred HHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Q 005632 79 SALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHL 142 (687)
Q Consensus 79 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l 142 (687)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467788888888887763 35667889999999999999999999999999873 5556789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCCcH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--------HPSDADL 206 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~ 206 (687)
|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++.. .|.. .
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--A 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--H
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--H
Confidence 99999999999999999999987 3556788899999999999999999999999887 3322 2
Q ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 207 SVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.++..+|.++...|++++|+.++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998876
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=5.5e-16 Score=149.31 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=173.2
Q ss_pred CCChhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWK 106 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 106 (687)
..+++....+..-......+.+ ++|+..+.+++..+|++..+|...+.++...| .+++++.++..++..+|++..+|.
T Consensus 48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~ 127 (349)
T 3q7a_A 48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH 127 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3456777777766666666655 68999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHH
Q 005632 107 QLLTFAVQK-G-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE--------KAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 107 ~la~~~~~~-g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
..+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|...
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999988 8 8999999999999999999999999999999888887 99999999999999999999999
Q ss_pred HHHHHHcCC-------hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632 177 AQLFLKCGQ-------TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222 (687)
Q Consensus 177 a~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~ 222 (687)
+.++...+. ++++++++++++..+|++.. +|+.+..++...|..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S--aW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS--AWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCCC
Confidence 999999887 78999999999999999876 788888877776653
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=8.7e-17 Score=155.50 Aligned_cols=172 Identities=11% Similarity=0.028 Sum_probs=157.0
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 143 (687)
.|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 48888999999999999999999999999999999999999999999999999999999999999999997777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~ 223 (687)
..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++.+..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 77888899999999999999999999999999999999999999999999999999998855558889999999999999
Q ss_pred HHHHHHHHHHHH
Q 005632 224 KTLQHIEHAQIV 235 (687)
Q Consensus 224 ~A~~~~~~~~~~ 235 (687)
+|...|++++..
T Consensus 273 ~a~~~~r~al~~ 284 (287)
T 3qou_A 273 ALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999988764
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=7.6e-17 Score=133.96 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=111.5
Q ss_pred CCChh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 29 KLSPG-VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 29 ~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
.++|+ +..+..+|..++..|+|++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35554 56677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.8e-16 Score=169.95 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=141.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 126 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 126 (687)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCC
Q 005632 127 QAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC---GQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 127 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~ 203 (687)
++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++... |++++|+..++++++.+|.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred CcHHHHHHHH
Q 005632 204 ADLSVIDLLV 213 (687)
Q Consensus 204 ~~~~~~~~la 213 (687)
.. .+..++
T Consensus 162 ~~--~~~~l~ 169 (568)
T 2vsy_A 162 VE--PFAFLS 169 (568)
T ss_dssp SC--HHHHTT
T ss_pred cC--hHHHhC
Confidence 76 444544
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=2.3e-17 Score=141.06 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136 (687)
Q Consensus 57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 136 (687)
+++++..+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|..+|.++...|++++|+.+|++++.++|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.+++.+|.++...|++++|+..|++++++.|+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 555555555555555555555555555555543
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=2.5e-15 Score=144.75 Aligned_cols=266 Identities=9% Similarity=0.009 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
++..+..+....+..++|+.++.+++.++|++..+|...+.++...| .+++++..+.+++..+|++..+|...+.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333344444556678999999999999999999999999999999 59999999999999999999999999999988
Q ss_pred c-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632 149 I-G-DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA--------RSIGILEEYLKVHPSDADLSVIDLLVAILME 218 (687)
Q Consensus 149 ~-g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~ 218 (687)
. + ++++++..+.++++.+|.+..+|...+.++...|.++ +++..++++++.+|.+.. +|...+.++..
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S--AW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS--AWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHh
Confidence 8 7 8999999999999999999999999999998888888 899999999999998875 78899998888
Q ss_pred cch-------HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632 219 NNA-------YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS 291 (687)
Q Consensus 219 ~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 291 (687)
.+. ++++++++++++.. +|.+..+|..+..++...|.... .++... -|...+.+...
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~~~--~~~~~~---~~~~~~~~~~~------- 277 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLPLV--PILPAI---LPYTASKLNPD------- 277 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCSG--GGHHHH---GGGTC-------------
T ss_pred ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCCcc--cccccc---ccccccccccc-------
Confidence 876 68888888888888 78888888777777766665300 000000 00000000000
Q ss_pred cCChHHHHHHHHHhhhc-----cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhcCCCHHHHHHHHH
Q 005632 292 LGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL-DRFEDNIDARLTLAS 356 (687)
Q Consensus 292 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~ 356 (687)
...-......+... ..+..+.++..++.+|...|+.++|.+.++.+. +.+|-....|...+.
T Consensus 278 ---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 278 ---IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ---chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 00111111111111 124566777777777777777777777777765 556766666655443
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=5.4e-17 Score=138.69 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=111.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 87 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
|+++.+++.+|.++..+|++++|+..|+++++..|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999998764
No 109
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=2.2e-14 Score=137.72 Aligned_cols=247 Identities=11% Similarity=0.063 Sum_probs=195.8
Q ss_pred HcCChH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 80 ALGNHK-SAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 80 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..|.++ +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 456655 89999999999999999999999999987776 6899999999999999999999999999999
Q ss_pred cCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc------
Q 005632 149 IGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ-TARSIGILEEYLKVHPSDADLSVIDLLVAILMEN------ 219 (687)
Q Consensus 149 ~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~------ 219 (687)
.|. +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+.. +|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--AW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHHSCCC--
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhhhcccc
Confidence 994 8999999999999999999999999999999998 59999999999999999876 788998888776
Q ss_pred --------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632 220 --------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAIDHADLITEVADTLM 290 (687)
Q Consensus 220 --------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 290 (687)
+.++++++++.+++.. +|.+..+|+.+..++... |. . ... ..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~~~~----------------~-~~~--------~~ 249 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAGSGR----------------C-ELS--------VE 249 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSSSCG----------------G-GCC--------HH
T ss_pred ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccCc----------------c-ccc--------hH
Confidence 5677777778777777 666666665444433322 10 0 000 01
Q ss_pred hcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005632 291 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYL---SLKERAHAIMFFYKALDRFEDNIDARLTLASLL 358 (687)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 358 (687)
..+.++++++.++++++. .|++...+..++.+.. ..|..++...++.++++++|....-|..+...+
T Consensus 250 ~~~~l~~el~~~~elle~-~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 250 KSTVLQSELESCKELQEL-EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 123467888888888877 6777666555554332 246778899999999999998877776665443
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=2.1e-16 Score=147.07 Aligned_cols=202 Identities=10% Similarity=0.010 Sum_probs=156.3
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHcCChHHHHHHHHHHhccCCCCH-
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-------GLAHSALGNHKSAFDFYVIAAHLSPKDS- 102 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~- 102 (687)
.+....+|..|.-+ ..+++..|.+.|.+++..+|+.+++|..+ +.++...+...+++..+++.+.+.|...
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 35667788888876 68999999999999999999999999999 8899999999999999999998777543
Q ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 103 --------------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (687)
Q Consensus 103 --------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (687)
.+...++.++...|++++|...|..++...|.+. +.+.+|.++...+++++|+..|+.+
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3444577788888888888888888877777777 7888888888888888888888766
Q ss_pred HHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 163 QKLFPDN--VDATKTGAQLFLKCGQTARSIGILEEYLKVH--PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 163 ~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
....+.. ..+++.+|.++..+|++++|+..|++++... |.. ...+++.+|.++..+|+.++|...|++++..
T Consensus 162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5542111 3467788888888888888888888877432 221 1236677788888888888888888888777
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=2.6e-15 Score=146.98 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=90.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 124 (687)
..|++++|.++++++.+..+.. ++. .+++++|..+|.++ |.++...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4567778888888777765531 111 46777777777665 4566677777777777
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHH
Q 005632 125 IRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKCGQTARSIGI 192 (687)
Q Consensus 125 ~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 192 (687)
|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++++.+. + ..++..+|.+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77777654321 234555566666666666666666665554321 1 2334445555544 555555555
Q ss_pred HHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 193 LEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 193 ~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
|++++.+.|.... ..++..+|.++...|++++|+.+|++++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555544332211 123444444444445555555444444444
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=2e-16 Score=135.76 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 90 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 90 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.|++++.++|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 555555555555555555555555555555444443
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=1.1e-15 Score=131.12 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA 131 (687)
Q Consensus 52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 131 (687)
.+-..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.+
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 132 EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 132 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
+|+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999999998876543
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.3e-15 Score=141.67 Aligned_cols=211 Identities=10% Similarity=-0.000 Sum_probs=174.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCCc------
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG-------AQLFLKCGQTARSIGILEEYLKVHPSDAD------ 205 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------ 205 (687)
++..|..+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34444454 57888888889999999999888888888 78888888888888888888887665422
Q ss_pred -------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632 206 -------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272 (687)
Q Consensus 206 -------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 272 (687)
..+...++.++...|+|++|.+.|..+... .|... ..+.+|.++.+.+++++|+..|+.+..
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 124556889999999999999999988765 67667 899999999999999999999998765
Q ss_pred hCchh-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632 273 KNAID-HADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD-NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349 (687)
Q Consensus 273 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 349 (687)
..++. ...+++.+|.++...|++++|+.+|+++..... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 43221 246899999999999999999999999985533 55 6789999999999999999999999999999999 87
Q ss_pred HHHHHHH
Q 005632 350 ARLTLAS 356 (687)
Q Consensus 350 ~~~~la~ 356 (687)
+...|..
T Consensus 243 ~~~aL~~ 249 (282)
T 4f3v_A 243 VAAALKD 249 (282)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 7766643
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=8.2e-15 Score=143.38 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=130.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHH
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 120 (687)
.+++++|+..|.++ |.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|...|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 46777777777765 567777888888888888888765422 4567788888888888888
Q ss_pred HHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 005632 121 AMYYIRQAIRAEPK--D----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 121 A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~ 188 (687)
|+.+|++++.+.+. + ..++..+|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++..+|++++
T Consensus 95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 88888888876432 2 3567788888887 88888888888888876543 4677888888888888888
Q ss_pred HHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
|+..|++++.+.|.+.. ...+..+|.++...|++++|+..|++++ .
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 88888888887655432 2256677778888888888888888888 6
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.8e-15 Score=162.08 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=136.0
Q ss_pred cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 81 LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc---chHHHHHHHHHHHHHHhc
Q 005632 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN---NAYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~ 237 (687)
++++.+|++..++..+|.++...|++++|+..++++++.+|++.. ++..++.++... |++++|+..++++++.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~-- 157 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY--ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ-- 157 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH--
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhccccHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999998875 788999999999 9999999999999998
Q ss_pred cCCCchHHHHHHHH
Q 005632 238 SGKELPLKLKVKAG 251 (687)
Q Consensus 238 ~~~~~~~~~~~~l~ 251 (687)
.+.....+..++
T Consensus 158 --~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 --GVGAVEPFAFLS 169 (568)
T ss_dssp --TCCCSCHHHHTT
T ss_pred --CCcccChHHHhC
Confidence 444444444433
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.65 E-value=1.1e-14 Score=133.76 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG----DTAQAMYYIR 126 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 126 (687)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578888888875 68999999999999999999999999999864 678999999999988 6 8999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 005632 127 QAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLK----CGQTARSIGILEEY 196 (687)
Q Consensus 127 ~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 196 (687)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 5789999999999987 8899999999999998877 358999999999998 88999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHc-c-----hHHHHHHHHHHHHHH
Q 005632 197 LKVHPSDADLSVIDLLVAILMEN-N-----AYEKTLQHIEHAQIV 235 (687)
Q Consensus 197 ~~~~p~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~~~~~ 235 (687)
.+. |.++. +++.+|.+|... | ++++|+.+|+++.+.
T Consensus 156 ~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 988 44544 688999998764 3 899999999999877
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=3.8e-17 Score=161.66 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=161.7
Q ss_pred cCCHHHHHHHHHH----HHHhCCCchHHHHHHHHHHH------------HcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 47 YGNFEQAISLLKE----VVRLSPNLPETYNTLGLAHS------------ALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 47 ~g~~~~A~~~~~~----~l~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
.+.+++|+..++. ++.+.|.. ++...|.... ..+++++|+..+++++...|....++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4467888888887 77778875 4555554432 4567888888888888888999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 175 (687)
+++..|++++|+..|++++...|.+ ..++.++|.++...|++++|+..|+++++++|+++.+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHHHHHHHH
Q 005632 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT-LQHIEHAQIV 235 (687)
Q Consensus 176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~ 235 (687)
+|.++..+|++++|+..|+++++++|++.. ++..++.++...|++++| ...|++++..
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 788999999999999998 4567776654
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=7.7e-16 Score=148.21 Aligned_cols=196 Identities=9% Similarity=0.029 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 111 (687)
..+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (687)
+...|++++|+..|+++++++|+++..+........ ...++...........|.++.+...++.++ .|++++|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 888888888888888888877755322111111111 112222223333345566666666666554 577778888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHc-chHHHHHHHHHHHHH
Q 005632 192 ILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQI 234 (687)
Q Consensus 192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 234 (687)
.++++++.+|++.. ....++.++... +.+++|...|.++..
T Consensus 157 ~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGH--IRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHH--HTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88777777776543 344455555544 566777777776654
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=1.5e-14 Score=122.20 Aligned_cols=132 Identities=25% Similarity=0.443 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
+++.+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444455555555555555555554444444444555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 201 (687)
|++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555555555555555555555555555555555555554444
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=5.7e-16 Score=153.21 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---------------HHHHHHHHH
Q 005632 46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---------------SALWKQLLT 110 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 110 (687)
..+++++|+..+++++..+|.++.++..+|.+++..|++++|+..|++++.+.|.+ ..++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS- 189 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A- 189 (687)
++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005632 190 IGILEEYLKV 199 (687)
Q Consensus 190 ~~~~~~~~~~ 199 (687)
...|.+++..
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4567766543
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.63 E-value=9.1e-16 Score=131.00 Aligned_cols=116 Identities=15% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 90 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 90 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
.|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+.+++.+|.++...|++++|+..|++++...|+++.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 555555555555555555555555555555554443
No 123
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=2.7e-14 Score=120.68 Aligned_cols=134 Identities=25% Similarity=0.481 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|++
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999998863
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=2.6e-15 Score=144.49 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
+...|++++|+..|+++++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 55555555555555555555443
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=6.3e-15 Score=125.76 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=111.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 55 SLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 134 (687)
Q Consensus 55 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 134 (687)
..|++++..+|+++..++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 135 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
++.+++.+|.++...|++++|+..|++++++.|+++........+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999887665444443
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.6e-14 Score=119.19 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666666666666666666666665555556666666
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFY 146 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~ 146 (687)
...|++++|+..|++++..+ |.+..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 66666666666666655555 55555555554443
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.5e-14 Score=119.31 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=95.2
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
|..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKLF------PDNVDATKTGAQLFLK 182 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~ 182 (687)
++...|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 8888888888888888888888 7777777777666543
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=6.3e-15 Score=131.37 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=108.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005632 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF-AVQKGDT--AQ 120 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 120 (687)
+...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678889999999999999999999999999999999999999999999998888888888888888 7788888 88
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 173 (687)
|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888888888888888888888888888888888888888888775443
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=5e-14 Score=129.86 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+...++..|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 44567778888888888888888888875 33 6778888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDI----------------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888888888777665 788888888888888888888888888888866
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.59 E-value=8e-14 Score=127.90 Aligned_cols=179 Identities=18% Similarity=0.125 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005632 85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG----DYEKAAESYE 160 (687)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 160 (687)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567778888764 67888888888888888888888888888774 578888888888887 6 7888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHH
Q 005632 161 QIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHA 232 (687)
Q Consensus 161 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~ 232 (687)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..|.+....+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8854 4678888888888877 788888888888888776632112367788888888 77888888888888
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhhCc
Q 005632 233 QIVRFSGKELPLKLKVKAGICYLRL-G-----NMEKAEILFADLQWKNA 275 (687)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~~ 275 (687)
... +....+++.+|.+|... | ++++|+.+|+++.....
T Consensus 156 ~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 765 22344677778777654 2 77888888887766543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=1.5e-13 Score=133.55 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=139.4
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD- 135 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~- 135 (687)
.+|.....+...+..+...|++++|+..+.+++...|... ..+..+|.++...|++++|+..+++++...+..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 3455566777888888999999999999999888776543 335668888888899999999999998765433
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 136 -----ISLRIHLASFYVEIGDYEKAAESYEQIQ---KLFPDNV----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 136 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|..+|++++|+.++++++...+..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5578889999999999999999999998 4456543 578899999999999999999999998764321
Q ss_pred ----CcHHHHHHHHHHHHHcchHHHH-HHHHHHHHHHhc
Q 005632 204 ----ADLSVIDLLVAILMENNAYEKT-LQHIEHAQIVRF 237 (687)
Q Consensus 204 ----~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~~ 237 (687)
....++..+|.++...|++++| ..++++++....
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 1135788999999999999999 777999887743
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=6.3e-14 Score=147.58 Aligned_cols=186 Identities=10% Similarity=0.089 Sum_probs=165.1
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhccCCCCHHHH
Q 005632 37 MLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALGN----------HKSAFDFYVIAAHLSPKDSALW 105 (687)
Q Consensus 37 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~ 105 (687)
...........|++ ++|+..+++++..+|++..+|+..+.++...|+ +++++.++++++..+|++..+|
T Consensus 31 ~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW 110 (567)
T 1dce_A 31 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 110 (567)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 33344445556665 577999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 106 KQLLTFAVQKG--DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 106 ~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
...+.++...| ++++++.++.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++..
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99999999999 7799999999999999999999999999999999 89999999999999999999999999999888
Q ss_pred c--------------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632 183 C--------------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 183 ~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~ 224 (687)
. +.++++++++.+++..+|++.. +|+.++.++...+++++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 5 4568888888888888888875 78888888877776544
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=1.2e-13 Score=121.57 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666655555556666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHL--ASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~ 163 (687)
..|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666655555555554332 222455555555555555443
No 134
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=3.3e-13 Score=127.23 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=132.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 119 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 119 (687)
.+..|-.|+|..++.... +..|.+ ....+.+.++|+.+|++... .. .+....+...++..+. ++
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc--
Confidence 556677888888777433 233332 23555666777777776631 11 1112223333343331 22
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTARSIGILEEYL 197 (687)
Q Consensus 120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 197 (687)
|+..+++.+...+.+...+..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666665545555566777777777777777777777766665 566667777777777777777777777766
Q ss_pred HhCCC-----CCcHHHHHHHH--HHHHHcc--hHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 198 KVHPS-----DADLSVIDLLV--AILMENN--AYEKTLQHIEHAQIVRFSGKEL--PLKLKVKAGICYLRLGNMEKAEIL 266 (687)
Q Consensus 198 ~~~p~-----~~~~~~~~~la--~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 266 (687)
+.+|+ +. +...++ ++....| ++.+|...|+++... .|. ....++. ++..+|++++|...
T Consensus 164 ~~~~d~~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 NAIEDTVSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHSCHHHHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred hcCccccccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence 66662 22 233333 2244444 666666666665544 222 1112222 55556666666666
Q ss_pred HHHHhhhCc---------hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH
Q 005632 267 FADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY 315 (687)
Q Consensus 267 ~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 315 (687)
++.++...| ++++.++.+++.+....|+ +|.++++++... .|+++.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-~P~hp~ 288 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-DHEHAF 288 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-TCCCHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-CCCChH
Confidence 655444321 1244444444444444444 444444444443 444443
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=1.6e-13 Score=120.74 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..++.+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHH
Q 005632 149 IGDYEKAAESYEQIQKLFPDNVDATKTG--AQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~ 196 (687)
.|++++|+..|+++++.+|.+..++..+ +..+...|++++|+..+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555555554444222 22244444444444444443
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=2.1e-13 Score=125.64 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
...++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3467889999999999999999999996 33 68899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNV----------------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
..|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..+++++...|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999888766 8999999999999999999999999999998764
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=8.3e-14 Score=117.30 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=85.1
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
...+.....++..|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.++++++..+|.+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34455666666777777777777777777777777777777777777777777777777777777777777766667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
+|.++...|++++|+.++++++..+|.+..++..++.++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777777666666666666666666554
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=1e-13 Score=116.72 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=101.0
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 143 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 143 (687)
.|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 35567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
.++...|++++|+..|+++++.+|.+..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888777653
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=9e-14 Score=116.63 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
...++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+.++.+++..+|+++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
..|++++|+.++++++..+|+++.++..++.++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444433
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=8.4e-14 Score=124.02 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=118.5
Q ss_pred HHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005632 78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF-YVEIGDY--EK 154 (687)
Q Consensus 78 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~ 154 (687)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 8899998 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 155 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999999999876
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=9.9e-15 Score=132.72 Aligned_cols=146 Identities=13% Similarity=0.013 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----------------HHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----------------ALWKQL 108 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l 108 (687)
...|++++|.+.+.......+..+..+..+|.+++..|++++|+..|.+++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3455566666665555555555566666677777777777777777777776666654 666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
|.++...|++++|+.++++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++..+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777766666665
Q ss_pred HH
Q 005632 189 SI 190 (687)
Q Consensus 189 A~ 190 (687)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 55
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.55 E-value=5.5e-13 Score=125.79 Aligned_cols=275 Identities=10% Similarity=-0.026 Sum_probs=204.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
+|+.++.+ .-.+..|+|..++.-..+ ..|.+ ......+.+++..+|++.... ..+....+...++..
T Consensus 13 ~~~~lf~i-kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~ 80 (310)
T 3mv2_B 13 DPMDYFNI-KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQF 80 (310)
T ss_dssp --CCTHHH-HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHH
Confidence 45555554 345678999999985443 33333 345666788899999887421 122233355555554
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A 225 (687)
+. ++ |+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+|......++..++.++...|+.+.|
T Consensus 81 ~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 81 LD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp HT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred hc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 42 32 89999999887666777788999999999999999999999988887333334788999999999999999
Q ss_pred HHHHHHHHHHhccCCC------chHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChH
Q 005632 226 LQHIEHAQIVRFSGKE------LPLKLKVKAGICYLRLG--NMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSN 296 (687)
Q Consensus 226 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 296 (687)
.+.++++.+. ++ ....+...-+++.+..| ++.+|..+|+++....|. ..+..++. ++...|+++
T Consensus 156 ~k~l~~~~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~ 228 (310)
T 3mv2_B 156 STIFDNYTNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIA 228 (310)
T ss_dssp HHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHH
T ss_pred HHHHHHHHhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHH
Confidence 9999999888 65 55555555676677777 999999999999888763 12333333 899999999
Q ss_pred HHHHHHHHhhhcc---------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 005632 297 SALKYYHFLETNA---------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA 367 (687)
Q Consensus 297 ~A~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 367 (687)
+|...++.+.... .|+++.++.+++.+...+|+ +|.++++++.+..|+++-+.- ...+...++++
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d----~~~k~~~Fd~~ 302 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH----HQEIDAKFDEL 302 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence 9999999776541 38899999999999999998 899999999999999986543 22334445555
Q ss_pred HHhc
Q 005632 368 ITLL 371 (687)
Q Consensus 368 ~~~~ 371 (687)
..-|
T Consensus 303 ~~ky 306 (310)
T 3mv2_B 303 VRKY 306 (310)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 5444
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=1.4e-13 Score=120.66 Aligned_cols=114 Identities=24% Similarity=0.250 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 110 (687)
+.++..++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
++...|++++|+.+|+++++++|++..+++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 7777777777777777777777766665544443
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.54 E-value=1.6e-14 Score=131.29 Aligned_cols=164 Identities=14% Similarity=0.052 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI----------- 136 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----------- 136 (687)
+......+.+....|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 344455566777788888888888776666667788899999999999999999999999999999887
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632 137 -----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211 (687)
Q Consensus 137 -----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 211 (687)
.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|++.. ++..
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~ 161 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999875 7889
Q ss_pred HHHHHHHcchHHHHH-HHHHHHH
Q 005632 212 LVAILMENNAYEKTL-QHIEHAQ 233 (687)
Q Consensus 212 la~~~~~~~~~~~A~-~~~~~~~ 233 (687)
++.++...++..++. ..+.+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 162 YELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888776 4444443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=1.7e-13 Score=114.87 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=119.7
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 142 (687)
.+|.++..++.+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 187 (687)
|.++...|++++|+..|+++++..|+++.++..++.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998863
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=1.6e-13 Score=133.30 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA------LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------IS 137 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 137 (687)
.+...+..++..|++++|...+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445577888999999999999999887766554 23358888888899999999999999864432 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cH
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKL---FPD----NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DL 206 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 206 (687)
++..+|.+|...|++++|+.+|+++++. .|. ...++.++|.+|..+|++++|+.+++++++..+... ..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6889999999999999999999999853 212 245788999999999999999999999998754331 13
Q ss_pred HHHHHHHHHHHHcc-hHHHHHHHHHHHHHHhc
Q 005632 207 SVIDLLVAILMENN-AYEKTLQHIEHAQIVRF 237 (687)
Q Consensus 207 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~ 237 (687)
.++..+|.++...| .+++|+.++++++....
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 57889999999999 57999999999998753
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=7.5e-13 Score=128.54 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=146.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--- 169 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--- 169 (687)
|.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34455667788899999999999999999999887654 346678999999999999999999999875543
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCCCc--HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc--C
Q 005632 170 ---VDATKTGAQLFLKCGQTARSIGILEEYL---KVHPSDAD--LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS--G 239 (687)
Q Consensus 170 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~ 239 (687)
..++..+|.+|...|++++|+.+|++++ ...|++.. ..+++++|.+|...|++++|+.++++++..... .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 5688999999999999999999999999 44555432 147899999999999999999999999987432 2
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhC
Q 005632 240 KELPLKLKVKAGICYLRLGNMEKA-EILFADLQWKN 274 (687)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~ 274 (687)
......+++.+|.++...|++++| ..++++++...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 233578899999999999999999 78899877643
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=4e-13 Score=117.81 Aligned_cols=107 Identities=18% Similarity=0.103 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
+.+...+..+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 179 LFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
++...|++++|+..|+++++++|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 666666666666666666666666655
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.51 E-value=8.8e-13 Score=109.42 Aligned_cols=116 Identities=27% Similarity=0.450 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
+.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555556666666666666666666655555555555566666666666666666666666655655555666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 183 (687)
..|++++|+..++++++..|+++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666655555555555443
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=2.3e-13 Score=113.14 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 99 (687)
.+|..++..|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 3344444444444444444444444444444444444444444444444444444444433
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=1.3e-13 Score=113.37 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 115 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 115 (687)
.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 005632 116 GDTAQAMYYIRQAIRAEPKDI 136 (687)
Q Consensus 116 g~~~~A~~~~~~a~~~~p~~~ 136 (687)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888777654
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=4.1e-13 Score=111.54 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISLR 139 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~ 139 (687)
.+.++..+|..++..|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999988765 3578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (687)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 177 (687)
..+|.++...|++++|++.|++++...|+ ++....+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 89999999999999999999999999885 55554443
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=2.1e-14 Score=148.39 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---------------HHHHHHHHHHH
Q 005632 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---------------SALWKQLLTFA 112 (687)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~ 112 (687)
+++++|+..|+.++...|..+..+..+|.+++..|++++|+..|++++.++|.+ ..++.++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666667777777777777777777666666665 34444444444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 190 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 190 (687)
..+|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444444444444444433
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=3.7e-13 Score=114.02 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
|.++..++.+|.+++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
++...|++++|+..|+++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 444444444444444444444443
No 155
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.49 E-value=1.1e-10 Score=120.98 Aligned_cols=363 Identities=13% Similarity=0.054 Sum_probs=251.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhcc---CCCCHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHL---SPKDSALWKQ 107 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 107 (687)
..+...+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4677888889889988999999999999999888 77788887777777663 45567788888764 6788899988
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-
Q 005632 108 LLTFAV----QKGDTAQAMYYIRQAIRAEPKDISLR-IHLASFY-------------VEIGDYEKAAESYEQIQKLFPD- 168 (687)
Q Consensus 108 la~~~~----~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~-------------~~~g~~~~A~~~~~~~~~~~p~- 168 (687)
....+. ..|+.+.+...|++++..-+.+..-+ ......- ...+.+..|...|+.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 887754 34678899999999999533333222 2111111 1123344455555555544332
Q ss_pred CHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC
Q 005632 169 NVDATKTGAQLFLKC--GQ-----TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE 241 (687)
Q Consensus 169 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 241 (687)
+...|......-... |- .+.....|++++...|..+. +|...+..+...|+.++|...|++++.. |.+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-- 245 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-- 245 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS--
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc--
Confidence 344555544443221 11 34567899999999998864 7999999999999999999999999988 422
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC
Q 005632 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQW---------KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD 312 (687)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 312 (687)
..+++..+.. .+.++....+..... ..+.....+|...+......++.+.|..+|+++ .. .+.
T Consensus 246 --~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~ 317 (493)
T 2uy1_A 246 --MFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV 317 (493)
T ss_dssp --SHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred --HHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence 2233332222 111111111111110 012224567888888888888999999999999 43 334
Q ss_pred cHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632 313 NGYLYLKLAECYLSLK-ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW 391 (687)
Q Consensus 313 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 391 (687)
....|...|.+....+ +.+.|...|+.+++..|+.++.+...+......|+.+.|..+|+++.. .
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~---------- 383 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----T---------- 383 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----B----------
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----H----------
Confidence 6677777787777777 599999999999999999999888889999999999999999999832 1
Q ss_pred hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632 392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..++......-...|+.+.+.+.+.+.++..
T Consensus 384 --~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 384 --SRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 1355666666677799988888888887643
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=1.8e-13 Score=114.71 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..++..|..++..|+|++|+..|+++++.+|+++.. .++...|.+..+|.++|.++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence 45667888888888888888888888888888874332 01111222333555555555
Q ss_pred HHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 113 VQKGDTAQAMYYIRQAIRA-------EPKDISLR----IHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
..+|++++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++.
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 5555555555555555555 66666666 6666666666666666666666666665543
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.48 E-value=2.6e-13 Score=111.59 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
.++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 005632 150 GDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~ 169 (687)
|++++|+..|+++++.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 66666666666666665554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1.5e-12 Score=106.78 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666665556666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
..|++++|+..++++++.+|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666555555555544
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=2.9e-13 Score=118.38 Aligned_cols=114 Identities=8% Similarity=0.074 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------------------SPNLPETYNTLGLAHSALGNHKSAFDFYVI 93 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 93 (687)
..+..+...|..++..|+|++|+..|++++.. +|.++.+++.+|.++...|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677888899999999999999999999887 444445555555555555555555555555
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 005632 94 AAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASF 145 (687)
Q Consensus 94 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~ 145 (687)
++.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555 334344433
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1.8e-12 Score=106.19 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF 180 (687)
Q Consensus 147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 180 (687)
...|++++|+..++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777777777666653
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=3.2e-13 Score=113.17 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..+..+|..++..|++++|+..|+++++++|+++.. .++...|.+..+|.++|.++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHH
Confidence 445555666666666666666666666665554321 0011112234499999999999
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632 149 IGDYEKAAESYEQIQKL-------FPDNVDAT----KTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205 (687)
Q Consensus 149 ~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 205 (687)
+|++++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++..
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999 99999999 99999999999999999999999999998875
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.46 E-value=1.1e-13 Score=142.93 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=135.1
Q ss_pred HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005632 80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLAS 144 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~ 144 (687)
..+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++..+|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888889999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 224 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~ 224 (687)
++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.. ++..++.++...+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 78899999999999988
Q ss_pred HHHH-HHHHH
Q 005632 225 TLQH-IEHAQ 233 (687)
Q Consensus 225 A~~~-~~~~~ 233 (687)
+... +.+++
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 7753 44443
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=6.4e-13 Score=121.27 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=101.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHcCC
Q 005632 44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH------LSPKDSALWKQLLTFAVQKGD 117 (687)
Q Consensus 44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 117 (687)
++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35678888888855544332235677788888888888888888888888877 334455667777777777777
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcC
Q 005632 118 TAQAMYYIRQAIRA---EPKD----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DN----VDATKTGAQLFLKCG 184 (687)
Q Consensus 118 ~~~A~~~~~~a~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~la~~~~~~g 184 (687)
+++|+.++++++.. .+++ ..++..+|.++...|++++|+..+++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777777775 3322 34566777777777777777777777765422 11 123456666666666
Q ss_pred ChHHHHHHHHHHHHhC
Q 005632 185 QTARSIGILEEYLKVH 200 (687)
Q Consensus 185 ~~~~A~~~~~~~~~~~ 200 (687)
++++|+..+++++...
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6666666666666553
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=3.3e-12 Score=105.85 Aligned_cols=118 Identities=23% Similarity=0.428 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
....++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++..+..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 36678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 150 (687)
...|++++|+..+++++..+|+++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999987654
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=4.5e-13 Score=130.10 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDA 172 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 172 (687)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+..|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445577889999999999999999998877665 33458999999999999999999999965442 347
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHH
Q 005632 173 TKTGAQLFLKCGQTARSIGILEEYLKV---HPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLK 245 (687)
Q Consensus 173 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 245 (687)
+..+|.+|...|++++|+.+|+++++. .|.+. ...+++++|.+|...|++++|+.++++++...... ......
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 899999999999999999999999963 22222 22478999999999999999999999999885432 234478
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHhhhC
Q 005632 246 LKVKAGICYLRLGN-MEKAEILFADLQWKN 274 (687)
Q Consensus 246 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~ 274 (687)
+++.+|.++...|+ +++|+..+++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999994 699999999987643
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=2e-12 Score=109.46 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=99.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632 97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176 (687)
Q Consensus 97 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 176 (687)
.+|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 177 AQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 177 a~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
|.++...|++++|+..|++++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999998877
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=6.5e-13 Score=116.16 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHL------------------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 128 (687)
.+..+..+|..++..|++++|+..|.+++.. +|....++..+|.++...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567889999999999999999999999988 5566677788888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 005632 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DATKTGAQLFLKC 183 (687)
Q Consensus 129 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~ 183 (687)
+.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888777 5555565555443
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=3.4e-12 Score=106.69 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLT 110 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 110 (687)
++..|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45556666666666666666666666666655 566666666666666666666666666666666 556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
++...|++++|+..|++++..+|+++.+......+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 66666666666666666666666665554444443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.8e-12 Score=110.12 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 107 (687)
+.....++..|..++..|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++..+|+++.++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4566777777888888888888888888888877776 6777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
+|.++...|++++|+.+|++++..+|++..++..++.+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777777777777777777777777777777766666554
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=3.2e-12 Score=106.87 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL 142 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 142 (687)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4567778888888888888888888888777776 677788888888888888888888888888777 7778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
|.++...|++++|+..|++++...|+++.+......+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888777666555544433
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-12 Score=109.51 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=114.0
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 139 (687)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 139 (687)
.+|.+...++.+|.+++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 140 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
+.+|.++...|++++|+..|+++++.+|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877543
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=4.4e-12 Score=115.65 Aligned_cols=157 Identities=12% Similarity=0.014 Sum_probs=108.9
Q ss_pred HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q 005632 79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHLASFYVEIGDY 152 (687)
Q Consensus 79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~~ 152 (687)
+..|++++|...++......+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888555544433356777888888888888888888888888873 333456677888888888888
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch
Q 005632 153 EKAAESYEQIQKL---FPDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA 221 (687)
Q Consensus 153 ~~A~~~~~~~~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~ 221 (687)
++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++...+.... ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888888776 3322 355777788888888888888888887765332221 1235677777777888
Q ss_pred HHHHHHHHHHHHHH
Q 005632 222 YEKTLQHIEHAQIV 235 (687)
Q Consensus 222 ~~~A~~~~~~~~~~ 235 (687)
+++|+.++++++..
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777766
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=3.5e-12 Score=134.32 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=160.8
Q ss_pred ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 005632 83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-- 150 (687)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-- 150 (687)
..++|+..+.+++..+|++..+|...+.++...|+ +++++..+++++..+|++..+|...+.++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34688999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----------
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG-QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN---------- 219 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~---------- 219 (687)
+++++++.+.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+.. +|+.++.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhcccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999886 799999988874
Q ss_pred ----chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH
Q 005632 220 ----NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 262 (687)
Q Consensus 220 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (687)
+.++++++++.+++.. .|.+..+|+.++.++...+.+++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence 6789999999999998 78888888888888888777554
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4e-11 Score=123.85 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-----------------TYNTLGLAHSALGNHKSAFDFYVIAAHLS 98 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 98 (687)
..+.+|..+...|+|++|++.|.++++..|.... ++..+|.+|...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999998886433 47778888888888888888888777654
Q ss_pred CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 99 PKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166 (687)
Q Consensus 99 p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 166 (687)
+... .+...++.++...|++++|+.++++++... +....++..+|.++...|++.+|+..+++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3321 234456666677777888888777776642 2224567777777777777777777777776542
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 167 ------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 167 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
+....++..++.+|...|++++|...+++++...+.... ...+..+|.++...|++++|..+|.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 223456777777777777777777777777665332211 234556666777777777777777777665
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=2e-12 Score=104.80 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--DISLRIHL 142 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l 142 (687)
|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444444444 44444444
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 005632 143 ASFYVEI-GDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 143 a~~~~~~-g~~~~A~~~~~~~~~~~p~ 168 (687)
|.++... |++++|++++++++...|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 4444444 4444444444444444443
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=2.9e-12 Score=103.87 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005632 98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKT 175 (687)
Q Consensus 98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 175 (687)
+|++...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57888889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHhCCCCC
Q 005632 176 GAQLFLKC-GQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 176 la~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 204 (687)
+|.++... |++++|+..+++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999988764
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.39 E-value=6.3e-13 Score=131.34 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
.+..+..+|..++..|+|++|+..|++++...|++.. +...|++.++...+. ..++..+|.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4556677788888888888888888888888876541 122333444433321 13678888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHH
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL-FLKCGQTARSIG 191 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~~~A~~ 191 (687)
...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888877 444566777888
Q ss_pred HHHHHHHhCCCCCc
Q 005632 192 ILEEYLKVHPSDAD 205 (687)
Q Consensus 192 ~~~~~~~~~p~~~~ 205 (687)
.|.+++...|.+..
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 88888888777653
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=3.9e-12 Score=106.47 Aligned_cols=98 Identities=9% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-------HHHHHHH
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-------SALWKQL 108 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 108 (687)
.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444333 3344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632 109 LTFAVQKGDTAQAMYYIRQAIRAEP 133 (687)
Q Consensus 109 a~~~~~~g~~~~A~~~~~~a~~~~p 133 (687)
|.++...|++++|+.+|++++...|
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.38 E-value=1.5e-13 Score=142.48 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777778888888888888888888888888877778888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQL--FLKCGQTARSIGILE 194 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 194 (687)
.+|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888888777777777777 777788888888877
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.38 E-value=4.2e-13 Score=132.60 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=97.7
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
+..+..+..+|.+++..|++++|+..|++++...|++.. +...|++.++...+. ..++.++|.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~ 238 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence 445667888888888888999999988888888876541 223444455443332 137899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHHcchHH
Q 005632 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI-LMENNAYE 223 (687)
Q Consensus 145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~-~~~~~~~~ 223 (687)
++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++.. ++..++.+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~--a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA--IRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 67788887 44567788
Q ss_pred HHHHHHHHHHHHh
Q 005632 224 KTLQHIEHAQIVR 236 (687)
Q Consensus 224 ~A~~~~~~~~~~~ 236 (687)
++...|.+++...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8999999999883
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=6.8e-12 Score=104.98 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=110.3
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 005632 66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISL 138 (687)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~ 138 (687)
..+..++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 185 (687)
++.+|.++...|++++|+..|+++++..| ++.....++.+....++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 68888888888766543
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.37 E-value=1.2e-12 Score=109.36 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHK----------SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
.+.|++|++.++++++.+|+++++|+.+|.++...++++ +|+..|+++++++|++..+|+.+|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 446888888999999999998889988888888887754 6666666666666666666666666665553
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=1.8e-13 Score=141.86 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 114 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 114 (687)
..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 005632 115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASF--YVEIGDYEKAAESYE-----------QIQKLFPDN 169 (687)
Q Consensus 115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~ 169 (687)
+|++++|+..|+++++.+|++..++..++.+ +...|++++|++.++ +++...|+.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999999999988 889999999999999 666666654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=2e-12 Score=105.78 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=53.7
Q ss_pred cCChHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632 81 LGNHKSAFDFYVIAAHL---SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157 (687)
Q Consensus 81 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 157 (687)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666666655 355555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHH
Q 005632 158 SYEQIQKLFPDNVDAT 173 (687)
Q Consensus 158 ~~~~~~~~~p~~~~~~ 173 (687)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666555543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=9.7e-12 Score=124.05 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 113 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 113 (687)
+..+..+|..++..|+|++|+..|+++++..|..+ +..........+|.+..++..+|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777776432211 001122223355566666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 191 (687)
..|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666667666667777777777777766666666666666666666666666543
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-10 Score=120.64 Aligned_cols=206 Identities=13% Similarity=0.018 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-----------------ALWKQLLTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a~~ 130 (687)
|......|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56677788999999999999999999998876542 3578999999999999999999999988
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 131 AEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFP------DNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 131 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
..+... .+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|...+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 655432 3456678888889999999999999987632 2357888999999999999999999999887
Q ss_pred hCCC----CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC-C--chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 199 VHPS----DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK-E--LPLKLKVKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 199 ~~p~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
.... .....++..++.+|...|++++|...+++++...+... + .....+..+|.++...|++++|..+|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5322 12235788999999999999999999999988743222 2 234667788999999999999999999886
Q ss_pred hh
Q 005632 272 WK 273 (687)
Q Consensus 272 ~~ 273 (687)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=1.2e-12 Score=107.24 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=88.8
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 46 AYGNFEQAISLLKEVVRL---SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
..|++++|+..|+++++. +|+++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Q 005632 123 YYIRQAIRAEPKDISLRIHLASF 145 (687)
Q Consensus 123 ~~~~~a~~~~p~~~~~~~~la~~ 145 (687)
..+++++...|+++........+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999998765444333
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.33 E-value=3.3e-10 Score=117.47 Aligned_cols=335 Identities=9% Similarity=-0.052 Sum_probs=226.9
Q ss_pred hcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 005632 46 AYG-NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMY 123 (687)
Q Consensus 46 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 123 (687)
..| +++.|..+|++++...|. |+++.+...|++++...| +...|..........++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488999999999999886 889999999999999888 77888888877777663 455677
Q ss_pred HHHHHHHh---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-------------HH
Q 005632 124 YIRQAIRA---EPKDISLRIHLASFYV----EIGDYEKAAESYEQIQKLFPDNVDAT-KTGAQLF-------------LK 182 (687)
Q Consensus 124 ~~~~a~~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~-------------~~ 182 (687)
.|+.++.. +|.+...|...+..+. .+|+.+.+...|++++...+.+..-+ ......- ..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88888874 6788888888887754 35678899999999999533333222 1111111 11
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255 (687)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (687)
.+.+..|...++.+....+.. ....|......-... +..+.....|++++.. .|....+|+..+..+.
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 233445555566555543331 112454444443221 1145577899999998 6777899999999999
Q ss_pred HcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh-c--------cCCCcHHHHHHHHHHHHH
Q 005632 256 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET-N--------AGTDNGYLYLKLAECYLS 326 (687)
Q Consensus 256 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~~~~~la~~~~~ 326 (687)
..|+.+.|..+|++++.. |. ....+...+... +.+ +....+..... . ..+....+|...+.....
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~-~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SD-GMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CC-SSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-CC-cHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999999998 75 555555444331 111 11111111110 0 011234678888888888
Q ss_pred hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHH
Q 005632 327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA-KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR 405 (687)
Q Consensus 327 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 405 (687)
.++.+.|...|+++ ...+.....+...+.+....| +.+.|..+|+.++...|.++ ..+...+....
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~------------~~~~~yid~e~ 365 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST------------LLKEEFFLFLL 365 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHH
Confidence 99999999999999 433345667777777776666 69999999999998877654 23445567778
Q ss_pred HcCCchHHHHHHHHH
Q 005632 406 AKGMPEDFVDAIFPL 420 (687)
Q Consensus 406 ~~g~~~~A~~~~~~~ 420 (687)
..|+.+.|...|.++
T Consensus 366 ~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 366 RIGDEENARALFKRL 380 (493)
T ss_dssp HHTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHH
Confidence 889999998888876
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.33 E-value=1.4e-11 Score=122.99 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 147 (687)
+..+..+|..++..|++++|+..|++++...+..+ +....+.....+|.+..++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888887654321 111234444567788899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227 (687)
Q Consensus 148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~ 227 (687)
.+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.. ++..++.++...++++++..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~--~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875 78899999999999988865
Q ss_pred H
Q 005632 228 H 228 (687)
Q Consensus 228 ~ 228 (687)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.31 E-value=6.2e-12 Score=105.10 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=67.3
Q ss_pred HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632 80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT----------AQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 149 (687)
+.+.+++|+..++++++++|+++++|..+|.++...+++ ++|+..|+++++++|++..+++.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445678888888888888888888888888888877764 4777777777777777777777777777766
Q ss_pred C-----------CHHHHHHHHHHHHHhCCCCH
Q 005632 150 G-----------DYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 150 g-----------~~~~A~~~~~~~~~~~p~~~ 170 (687)
| ++++|+.+|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 56666666666666666654
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=4.6e-11 Score=104.23 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
+...|..++..|++++|+..+++++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 38 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLI 38 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=5.6e-11 Score=103.65 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 005632 67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----- 135 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----- 135 (687)
...++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.++++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 356899999999999999999999999998765322 478899999999999999999999999875432
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 136 -ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 136 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
..++..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|+..++++++....
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999987432 2467889999999999999999999999987544
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=6.2e-10 Score=90.51 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 200 (687)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555555555555566666666555555555
Q ss_pred CCCC
Q 005632 201 PSDA 204 (687)
Q Consensus 201 p~~~ 204 (687)
|...
T Consensus 84 ~~~~ 87 (115)
T 2kat_A 84 QSRG 87 (115)
T ss_dssp HHHT
T ss_pred cccc
Confidence 5433
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=2.7e-10 Score=92.65 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA 131 (687)
Q Consensus 52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 131 (687)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q 005632 132 EP 133 (687)
Q Consensus 132 ~p 133 (687)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.2e-11 Score=96.26 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWK 106 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 106 (687)
++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 445566667777777777777777777777777777777777777777777777777777777777766 66666
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 005632 107 QLLTFAVQKGDTAQAMYYIR 126 (687)
Q Consensus 107 ~la~~~~~~g~~~~A~~~~~ 126 (687)
.+|.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 66666666666655554443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=4e-10 Score=90.92 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC------HHHH
Q 005632 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN------IDAR 351 (687)
Q Consensus 278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 351 (687)
....+..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 5678899999999999999999999999988 89999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632 352 LTLASLLLEEAKEEEAITLLSPPKDLD 378 (687)
Q Consensus 352 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 378 (687)
..++.++...|++++|+..+++.....
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ 108 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELPEGY 108 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence 999999999999999988888765443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.08 E-value=1.2e-09 Score=84.38 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 146 (687)
+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33334444444444444444444444433433333444444444444444444444444444443333333333333
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=2e-09 Score=83.02 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
.+...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 005632 180 FLKCG 184 (687)
Q Consensus 180 ~~~~g 184 (687)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.00 E-value=1.4e-08 Score=97.42 Aligned_cols=74 Identities=7% Similarity=-0.089 Sum_probs=45.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 130 RAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 130 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 344566666666666666666666666666666666643 44555666666666666666666666666666553
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.99 E-value=1.8e-09 Score=84.91 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632 132 EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203 (687)
Q Consensus 132 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 203 (687)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 344555555555555555555555555555555555555555555555555555555555555555444433
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.96 E-value=8.8e-10 Score=86.75 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56677777777777777777777777777777 77777777777777777777777777777777666533 4
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 005632 117 DTAQAMYYIRQAIRAEPKD 135 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~ 135 (687)
.+.+++..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4556666666666555543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=1.5e-08 Score=85.05 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632 48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMY 123 (687)
Q Consensus 48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 123 (687)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888877653 3344 788887777788888888888765 567778888888877 778888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632 124 YIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGA 177 (687)
Q Consensus 124 ~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la 177 (687)
+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+. .++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 88888775 567777888888877 77788888888887776 3445544443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.94 E-value=3.3e-09 Score=83.44 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 132 (687)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 455555555555555555555555555555555555555555555555555555555555555555543
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.89 E-value=2.5e-09 Score=84.10 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 139 (687)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 139 (687)
..|.++...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|++++..+|++..++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444455555555555555555555555544 555555555555555555555555555555444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.89 E-value=9.7e-09 Score=105.26 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCC--
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRL-----SPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHL-----SPKD-- 101 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~-- 101 (687)
.+..+..+..+|+|++|+.+++++++. .|++ ...+..+|.+|..+|+|++|+.++++++.. .|++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344555566777777777777777764 2333 345666777777777777777777766654 2333
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632 102 -SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDIS---LRIHLASFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 102 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~ 164 (687)
...+.+||.+|..+|++++|+.+|++++++ .|+++. ....++.++..++.+++|...|.++.+
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666652 344432 334555555555556666655555543
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=6.8e-08 Score=92.69 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh----H---HHH-HHHH--HHhcc
Q 005632 31 SPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH----K---SAF-DFYV--IAAHL 97 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----~---~A~-~~~~--~al~~ 97 (687)
++++..++.+|..++..++ +.+|+.+|+++++.+|+++.++..++.+|.....+ . .++ ..+. .++..
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 3444444545555444332 24555555555555555555555555444321100 0 000 0111 11233
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632 98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 169 (687)
Q Consensus 98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 169 (687)
+|.++.++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|++.|.+++.++|..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445555555555555555555555555555555553 23444455555555555555555555555555544
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=9.6e-08 Score=80.00 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632 82 GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAE 157 (687)
Q Consensus 82 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 157 (687)
+++++|+.+|+++.+...... . +|.+|...+..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888877653333 3 788887777788888888888775 577788888888887 778888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhC
Q 005632 158 SYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVH 200 (687)
Q Consensus 158 ~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 200 (687)
+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888776 567788888888887 778888888888877763
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.76 E-value=2.4e-07 Score=84.91 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---------------------ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632 51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALG---------------------NHKSAFDFYVIAAHLSPKDSALWKQLL 109 (687)
Q Consensus 51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~la 109 (687)
.-.+.+++-++..+|++...+...|..|..-+ ++..|...|.++.. |...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHH
Confidence 44567788888999999887776666554321 13344555554432 11111
Q ss_pred HHHHHcCCHHHHHH-----HHHHHH-HhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CH
Q 005632 110 TFAVQKGDTAQAMY-----YIRQAI-RAEPKDISLRIHLASFYVE-----IG------DYEKAAESYEQIQKLFPD--NV 170 (687)
Q Consensus 110 ~~~~~~g~~~~A~~-----~~~~a~-~~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~~~~~p~--~~ 170 (687)
+......+.+++. -+..++ ..+|+++++++..|.+... .| ....|...++++++++|+ +.
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 1111223332222 122333 3567888888877776643 12 357889999999999998 56
Q ss_pred HHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHc-chHHHHHHHHHHHHHH
Q 005632 171 DATKTGAQLFLKC-----GQTARSIGILEEYLKVHPSD-ADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIV 235 (687)
Q Consensus 171 ~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~ 235 (687)
.++..+|.+|... |+.++|..+|+++++++|+. .. +++..|..++.. |+++++..++++++..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id--~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD--HHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH--HHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 7999999999885 99999999999999999975 65 677889988884 9999999999999987
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.74 E-value=1.5e-07 Score=96.44 Aligned_cols=132 Identities=10% Similarity=-0.059 Sum_probs=97.5
Q ss_pred HHHHHHcchHHHHHHHHHHHHHH----hccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-------chhhHHH
Q 005632 213 VAILMENNAYEKTLQHIEHAQIV----RFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-------AIDHADL 281 (687)
Q Consensus 213 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 281 (687)
+..+..+|+|++|+..+++++.. ++++++....++.++|.+|..+|++++|+.++++++... .++....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466788888888888888876 345666777788888888888888888888888765421 1235566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-------cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632 282 ITEVADTLMSLGHSNSALKYYHFLETN-------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF 344 (687)
Q Consensus 282 ~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 344 (687)
+.++|.+|..+|++++|+.+|++++.. .+|....+...++.++..++.+++|...|.++.+..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888877654 133445566778888888888888888888876544
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.67 E-value=5.5e-07 Score=93.22 Aligned_cols=162 Identities=6% Similarity=-0.057 Sum_probs=76.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcC---------ChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLG---------HSNSALKYYHFLETNAGTDNGYLYLKLA 321 (687)
Q Consensus 251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~~~la 321 (687)
...+.+.|+.++|+.+|+++....-..+...|..+..++...+ ..++|.++|+++....-..+..+|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3444444555555555554443322223344444444443322 2345555555554443344455555555
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHH
Q 005632 322 ECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKL 400 (687)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (687)
..|.+.|++++|..+|++..+.. +-+...+..+...+.+.|+.++|.++++.+.+..... +..++..+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-----------d~~ty~~L 181 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-----------EEPELAAL 181 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-----------CHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHH
Confidence 55555555555555555554431 1234445555555555555555555555444322111 12355555
Q ss_pred HHHHHHcCCchHHHHHHHHHHHH
Q 005632 401 CHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 401 a~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
..+|.+.|+.++|.+.+.++-+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh
Confidence 55555555555555555555443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.3e-07 Score=72.19 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=40.1
Q ss_pred CCCchHHHHHHHHHHHHcCC---hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 64 SPNLPETYNTLGLAHSALGN---HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 134 (687)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 134 (687)
+|++++.+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555555555555554443 455555555555555555555555555555555555555555555555554
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.62 E-value=4.6e-06 Score=86.27 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=76.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632 142 LASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQLFLKCGQ---------TARSIGILEEYLKVHPSDADLSVIDL 211 (687)
Q Consensus 142 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~~p~~~~~~~~~~ 211 (687)
+...+.+.|+.++|++.|+++.+.. +.+...+..+..++...+. .++|..+|+++....- .++..++..
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~Pd~~tyn~ 110 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VPNEATFTN 110 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 3344445555555555555554431 1133334334333333222 3445555555444321 111124555
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632 212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS 291 (687)
Q Consensus 212 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 291 (687)
+...+.+.|++++|..+|+++... + -..+...+..+...+.+.|+.++|..+|+.+.......+...+..+...+.+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~-g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAF-G--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT-T--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-C--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 555555555555555555554433 1 1223344444555555555555555555555444333344555555555555
Q ss_pred cCChHHHHHHHHHhhhc
Q 005632 292 LGHSNSALKYYHFLETN 308 (687)
Q Consensus 292 ~g~~~~A~~~~~~~~~~ 308 (687)
.|+.++|.++++++.+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555444
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=4.9e-07 Score=69.00 Aligned_cols=73 Identities=14% Similarity=-0.016 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632 132 EPKDISLRIHLASFYVEIGD---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204 (687)
Q Consensus 132 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 204 (687)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 46667777777777665554 56777777777777777777777777777777777777777777777766643
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=6.5e-07 Score=73.81 Aligned_cols=92 Identities=8% Similarity=-0.020 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---ChHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632 50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG---NHKSAFDFYVIAAHLS-P-KDSALWKQLLTFAVQKGDTAQAMYY 124 (687)
Q Consensus 50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 124 (687)
...+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++.+++.+ | ...+.++.+|..+++.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345556666666666667777777777777766 5557777777777766 5 4566777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHH
Q 005632 125 IRQAIRAEPKDISLRIH 141 (687)
Q Consensus 125 ~~~a~~~~p~~~~~~~~ 141 (687)
++++++..|++..+...
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 77777777777665444
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.57 E-value=2.1e-06 Score=78.72 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=124.2
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 86 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---------------------DTAQAMYYIRQAIRAEPKDISLRIHLAS 144 (687)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~a~~~~p~~~~~~~~la~ 144 (687)
-.+..++-.+..+|++.......+..|..-+ ++..|...|.++... -..+
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra- 120 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS- 120 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH-
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH-
Confidence 3456677778889999877665555543221 233455555554431 1111
Q ss_pred HHHHcCCHHHHHH-----HHHH-HHHhCCCCHHHHHHHHHHHHH-----cCC------hHHHHHHHHHHHHhCCCCCcHH
Q 005632 145 FYVEIGDYEKAAE-----SYEQ-IQKLFPDNVDATKTGAQLFLK-----CGQ------TARSIGILEEYLKVHPSDADLS 207 (687)
Q Consensus 145 ~~~~~g~~~~A~~-----~~~~-~~~~~p~~~~~~~~la~~~~~-----~g~------~~~A~~~~~~~~~~~p~~~~~~ 207 (687)
+......+.+++. -+.. +-+.+|++++.++..|.+... .|. ...|...++++++++|+.....
T Consensus 121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs 200 (301)
T 3u64_A 121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA 200 (301)
T ss_dssp HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH
Confidence 1111223332222 1222 234578888888888776643 133 5789999999999999965555
Q ss_pred HHHHHHHHHHHc-----chHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCch
Q 005632 208 VIDLLVAILMEN-----NAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI 276 (687)
Q Consensus 208 ~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 276 (687)
+|..+|.+|... |+.++|..+|++++++ +|.. ...++..|..+... |+++++..++++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 899999999995 9999999999999999 7764 88999999999884 9999999999999987764
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.2e-06 Score=72.28 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632 86 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---DTAQAMYYIRQAIRAE-P-KDISLRIHLASFYVEIGDYEKAAESYE 160 (687)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 160 (687)
.+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | +..+.++.+|..+.+.|+|++|..+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444555555555555666666666666655 4446666666666655 4 345566666666666666666666666
Q ss_pred HHHHhCCCCHHHHH
Q 005632 161 QIQKLFPDNVDATK 174 (687)
Q Consensus 161 ~~~~~~p~~~~~~~ 174 (687)
++++..|++..+..
T Consensus 96 ~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 96 GLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHhcCCCCHHHHH
Confidence 66666666555443
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.42 E-value=2.4e-06 Score=67.18 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLS-------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 106 (687)
+...+..|..++..|+|..|+..|+++++.. +..+.++..+|.+++..|+++.|+..+++++.+.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455666666666667777776666666542 224455556666666666666666666666666665555544
Q ss_pred HHH
Q 005632 107 QLL 109 (687)
Q Consensus 107 ~la 109 (687)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.39 E-value=2.4e-06 Score=86.06 Aligned_cols=84 Identities=8% Similarity=0.042 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCC---HHHHHHHHH
Q 005632 47 YGNFEQAISLLKEVVRL-----SPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHL-----SPKD---SALWKQLLT 110 (687)
Q Consensus 47 ~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~ 110 (687)
.|+|++|+.++++++++ .|+++ ..+..+|.+|..+|+|++|+.++++++.. .|++ ...+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34455555555555442 22222 23444455555555555555555544432 1222 223444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~ 130 (687)
+|..+|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.37 E-value=3.6e-06 Score=66.17 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140 (687)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 140 (687)
+.-.+.+|..++..|+|..|+.+|++++... +....++..+|.++...|+++.|+.++++++...|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455666777777777777777777666542 233455566666666666666666666666666666655554
Q ss_pred HHH
Q 005632 141 HLA 143 (687)
Q Consensus 141 ~la 143 (687)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=5.6e-06 Score=83.58 Aligned_cols=85 Identities=7% Similarity=0.085 Sum_probs=43.6
Q ss_pred HcCChHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 005632 80 ALGNHKSAFDFYVIAAHL-----SPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDI---SLRIHLA 143 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la 143 (687)
.+|++++|+..++++++. .|++ ...+..+|.+|..+|+|++|+.++++++.. .|+++ ..+.++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555555533 1222 233445555555555555555555555542 23333 2355555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 005632 144 SFYVEIGDYEKAAESYEQIQK 164 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~ 164 (687)
.+|..+|++++|+.+|+++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 666666666666666655554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.17 E-value=1.7e-05 Score=80.14 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=60.4
Q ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCcH-HHHHH
Q 005632 146 YVEIGDYEKAAESYEQIQKL-----FPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKV-----HPSDADL-SVIDL 211 (687)
Q Consensus 146 ~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~-~~~~~ 211 (687)
+..+|++++|+..++++++. .|+++ .++.++|.+|..+|+|++|+.++++++.. .|+++.. ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666653 23333 34556666666666666666666666643 2333321 23556
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHH
Q 005632 212 LVAILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKVKAGICY 254 (687)
Q Consensus 212 la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~ 254 (687)
+|.+|..+|++++|+.++++++.+. ++++|....+...++.+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 6666666666666666666666552 344444444444444433
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.16 E-value=8.4e-06 Score=82.08 Aligned_cols=94 Identities=10% Similarity=0.155 Sum_probs=71.9
Q ss_pred HcCChHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 005632 80 ALGNHKSAFDFYVIAAHL-----SPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDI---SLRIHLA 143 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la 143 (687)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.. .|+++ ..+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999988864 35544 55778888899999999999999988874 34554 4577888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005632 144 SFYVEIGDYEKAAESYEQIQKL-----FPDNVDAT 173 (687)
Q Consensus 144 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 173 (687)
.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 8888888888888888888875 46666543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=9.1e-05 Score=58.58 Aligned_cols=94 Identities=7% Similarity=-0.026 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 005632 49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS---AFDFYVIAAHLS-P-KDSALWKQLLTFAVQKGDTAQAMY 123 (687)
Q Consensus 49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 123 (687)
....+...|.+.+..++...++.+.+|+++.+..+... ++.+++..+..+ | ...+.++.+|..+++.|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566666777777677777888888888887776665 777887777765 4 455677777777777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 005632 124 YIRQAIRAEPKDISLRIHL 142 (687)
Q Consensus 124 ~~~~a~~~~p~~~~~~~~l 142 (687)
+++.+++..|++..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 7777777777777665443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.87 E-value=0.00013 Score=57.68 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 87 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ---AMYYIRQAIRAE-P-KDISLRIHLASFYVEIGDYEKAAESYEQ 161 (687)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 161 (687)
+...|.+....++....+.+.+|.++....+... ++..++..+..+ | ..-+.++.+|..+++.|+|++|..+++.
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444444445555555555555444333 555555544443 2 2334455555555555555555555555
Q ss_pred HHHhCCCCHHHH
Q 005632 162 IQKLFPDNVDAT 173 (687)
Q Consensus 162 ~~~~~p~~~~~~ 173 (687)
+++..|++..+.
T Consensus 100 lL~~eP~n~QA~ 111 (126)
T 1nzn_A 100 LLQTEPQNNQAK 111 (126)
T ss_dssp HHHHCTTCHHHH
T ss_pred HHHhCCCCHHHH
Confidence 555555554443
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.87 E-value=7.7e-05 Score=61.75 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCC
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---------PETYNTLGLAHSALGNHKSAFDFYVIAAHLS---PKD 101 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~ 101 (687)
...++.....++..|.|+.|+-....++....++ ..+++.+|..++..|+|..|...|++++... +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4457888999999999999999999987654322 2378999999999999999999999997653 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF 180 (687)
Q Consensus 102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 180 (687)
......++. ...+.. ... .+.+.++.+.++.|+...+++.+|+..++.+-.. ...+.+...||.+|
T Consensus 100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 211111100 000000 011 1345678888888888899988888887764322 24567777777765
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.76 E-value=0.00056 Score=55.17 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202 (687)
Q Consensus 150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 202 (687)
++.++|.+.|+.+++.......+|...|..-.++|+...|.+.+.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44555555555554444444444555555555555555555555555554444
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.62 E-value=0.0016 Score=52.52 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhCCCCCc------HHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 166 FPDNVDATKTGAQLFLKCGQT------ARSIGILEEYLKVHPSDAD------LSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 166 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
.|++++.|..........|+. ++-++.|++++..-|.... ..+|...+.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344555555555444444554 4444555555544433211 0122233322 23355555555555555
Q ss_pred HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632 234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275 (687)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 275 (687)
.. ......+|...|....++|+...|..++.+++...|
T Consensus 88 ~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 AN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 54 222355555555555555555555555555555444
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.60 E-value=0.00088 Score=55.50 Aligned_cols=64 Identities=8% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-------HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-------LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 172 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
+++.-...++..|.|+.|+-....++....++++ +.++..+|..++..++|..|...|+++++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3445555566666677666666665544221111 234566777777777777777777777655
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.27 E-value=0.25 Score=51.80 Aligned_cols=190 Identities=10% Similarity=-0.005 Sum_probs=104.7
Q ss_pred HHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc
Q 005632 213 VAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSL 292 (687)
Q Consensus 213 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 292 (687)
+.......+.+.|...+........-+..........++.-....+...++...+......... .. .....+...+..
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~e~~~r~Alr~ 298 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TS-LIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HH-HHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hH-HHHHHHHHHHHC
Confidence 3334445577888888877655411111122223333343334445355666666665443332 22 233333344567
Q ss_pred CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 293 GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
|+++.|..++..+... ....+...+-+|..+...|+.++|..+|+++.. +.+ .+-.++. .++|..
T Consensus 299 ~d~~~a~~~~~~l~~~-~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa--~~Lg~~-------- 363 (618)
T 1qsa_A 299 GDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAA--QRIGEE-------- 363 (618)
T ss_dssp TCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHH--HHTTCC--------
T ss_pred CCHHHHHHHHHHcccc-ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHH--HHcCCC--------
Confidence 9999999999776643 345677788899999999999999999998875 332 2222222 223321
Q ss_pred CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632 373 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423 (687)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 423 (687)
....+.... ...... .........+..+...|....|...+..+++.
T Consensus 364 --~~~~~~~~~-~~~~~~-~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 364 --YELKIDKAP-QNVDSA-LTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp --CCCCCCCCC-SCCCCH-HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --CCCCCCCCC-hhHHhh-hccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 111110000 000011 11123456677888999999998887777654
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.23 E-value=0.0036 Score=49.57 Aligned_cols=73 Identities=7% Similarity=-0.029 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632 67 LPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 139 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 139 (687)
.+.+.+.+|+++.+..+. .+++.+++..+..+|. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 344455555555544432 2445555555544442 244455555555555555555555555555555554443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.18 E-value=0.0049 Score=49.52 Aligned_cols=75 Identities=7% Similarity=-0.040 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632 67 LPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141 (687)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 141 (687)
.+.+.|.+|+++.+..+. .+++.+++..+...|. ..+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 556666666666665543 3566666666665553 44556666666666666666666666666666666555443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.03 E-value=0.021 Score=45.88 Aligned_cols=81 Identities=7% Similarity=-0.011 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 99 PKDSALWKQLLTFAVQKGD---TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 99 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
...+.+.+.+|.++....+ ..+++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3456777777777777764 34677778877777774 4567777888888888888888888888888888776655
Q ss_pred HHHHH
Q 005632 175 TGAQL 179 (687)
Q Consensus 175 ~la~~ 179 (687)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.96 E-value=0.014 Score=46.25 Aligned_cols=74 Identities=8% Similarity=-0.008 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632 101 DSALWKQLLTFAVQKGD---TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174 (687)
Q Consensus 101 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 174 (687)
.+.+.+.+|.++....+ ..+++..++..+..+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34555566666655543 23456666666655552 3455666666666666666666666666666666655443
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.17 Score=51.02 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=106.1
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH
Q 005632 29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102 (687)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 102 (687)
..++.+...+..+..+ ..|+++.|++.+...-+. .+....+...+..++...|+++...+.+.-.........
T Consensus 12 D~s~~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk 90 (445)
T 4b4t_P 12 DYSQILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 90 (445)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 4445666777777765 458899999888655443 233466788888899999999988887765554443333
Q ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Q 005632 103 ALWKQLLTFAV----QKGDTAQAMYYIRQAIRA----EPK-------DISLRIHLASFYVEIGDYEKAAESYEQIQKL-F 166 (687)
Q Consensus 103 ~~~~~la~~~~----~~g~~~~A~~~~~~a~~~----~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~ 166 (687)
.+...+..... .....+. ......+.. ..+ .......|+.++...|++.+|...+.....- .
T Consensus 91 ~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~ 168 (445)
T 4b4t_P 91 LSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY 168 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 33222222111 1111111 111111111 000 1234456777777777777777777776532 1
Q ss_pred C-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCCc--HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 167 P-DN----VDATKTGAQLFLKCGQTARSIGILEEYLK---VHPSDAD--LSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 167 p-~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
. .+ .+.+....+++...+++.+|...+.++.. ..+..+. ...+...|.++...++|.+|-.+|..+...
T Consensus 169 ~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 169 GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1 11 35566667777777777777777776532 1222221 123455666777777777777777766654
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.69 E-value=0.45 Score=46.55 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=57.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC--CC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CC-chHHHH
Q 005632 175 TGAQLFLKCGQTARSIGILEEYLKVHPS--DA--DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KE-LPLKLK 247 (687)
Q Consensus 175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~~~~~~ 247 (687)
.+|.+|+..|+|.+|...+.++.+.-.. +. -.+++..-..+|...+++.++...+.++......- +| ....+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677777777777777666666553211 11 12344555666777777777777777766553211 11 233445
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHhh
Q 005632 248 VKAGICYL-RLGNMEKAEILFADLQW 272 (687)
Q Consensus 248 ~~l~~~~~-~~~~~~~A~~~~~~~~~ 272 (687)
..-|..+. ..++|..|...|-++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 55566666 67777777777666543
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.3 Score=54.12 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=60.2
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 42 SLQYAYGNFEQAIS-LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 42 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
......+++++|.. ++.. -| +...+..+...+...|.+++|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 4411 11 01222555566667777777775442 22222 233456778887
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (687)
Q Consensus 121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (687)
|.+..+. .+++..|..+|..+...++++.|+.+|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7776432 356677778888888888888888777765
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.52 E-value=1 Score=47.23 Aligned_cols=305 Identities=11% Similarity=0.044 Sum_probs=180.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHH---HHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 56 LLKEVVRLSPNLPETYNTLGLA---HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (687)
Q Consensus 56 ~~~~~l~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 132 (687)
.+...+..+|+.|..-...... +.+.+++..-+.++.. .|.+....+..+......|+..+|.....++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4455566788877654443333 2245666666554433 37788888888888888888877777666665433
Q ss_pred CCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH-------------HHhCCCCHH----------
Q 005632 133 PKD------------------ISLRIHLASFYVEIGDYEKAAESYEQI-------------QKLFPDNVD---------- 171 (687)
Q Consensus 133 p~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~p~~~~---------- 171 (687)
... ++-+.......+..|+...|......+ +..+|.+..
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~ 212 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATD 212 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCCh
Confidence 211 222333445555566665554443321 112333221
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHH
Q 005632 172 ---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 246 (687)
Q Consensus 172 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 246 (687)
....++.......+.+.|...+.......+-+... .....++.-....+...++..++.+.... .......
T Consensus 213 ~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 288 (618)
T 1qsa_A 213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc----CCChHHH
Confidence 12223444445568888988888776544332221 12223333334445355677777775543 2222222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc------------CC---
Q 005632 247 KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA------------GT--- 311 (687)
Q Consensus 247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------~~--- 311 (687)
.. .+...++.|+++.|...|..+..... ......+.+|.++...|+.++|..+|+.+.... .+
T Consensus 289 e~-~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~ 366 (618)
T 1qsa_A 289 ER-RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYEL 366 (618)
T ss_dssp HH-HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCC
T ss_pred HH-HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCC
Confidence 23 33345577999999999988755433 367778899999999999999999998765320 00
Q ss_pred ----C----c----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632 312 ----D----N----GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372 (687)
Q Consensus 312 ----~----~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 372 (687)
. . ...-...+..+...|....|...+..++... +..-...++.+....|.+..++....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0 0123455667778888888888887776542 34445667777788888887775543
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.31 Score=54.03 Aligned_cols=99 Identities=9% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHcCChHHHHH-HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005632 77 AHSALGNHKSAFD-FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155 (687)
Q Consensus 77 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 155 (687)
.....+++++|.. .+. .-|+ ......++..+...|.+++|+...+ ++...+ ......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHH
Confidence 3345677777765 331 1110 1223556666777777777765542 222222 334567777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 156 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
.+..+. .+++..|..+|..+...++++.|+.+|.++
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 776432 255677777777777777777777777765
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.33 E-value=0.89 Score=44.47 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--CHH----
Q 005632 70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-----LWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPK--DIS---- 137 (687)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~--~~~---- 137 (687)
+.+.+|..|...|++++-.+++......-+.-+. ....+-..+.. -+..+.-++....+++-..+ -..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555554433222111 11222222222 13333344444444432111 111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCc--H
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKCGQTARSIGILEEYLKVH---PSDAD--L 206 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~ 206 (687)
.-..+|..|+..|+|.+|...+.+..+.... + .+++.....+|...+++.++...+.++.... +.++. .
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2236899999999999999988888764222 1 3567777888999999999999998886553 12221 2
Q ss_pred HHHHHHHHHHH-HcchHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHcCC
Q 005632 207 SVIDLLVAILM-ENNAYEKTLQHIEHAQIVRFSGK-ELPLKLKVKAGICYLRLGN 259 (687)
Q Consensus 207 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 259 (687)
.+...-|..+. ..++|.+|...|-.+...+.... +....+...++.+....++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 23455677888 89999999999988877654221 1122333444555555554
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.029 Score=59.88 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=71.2
Q ss_pred cCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHH--Hc-CChHHHHHHHHHHhcc--------CCCC----------HHH
Q 005632 47 YGN-FEQAISLLKEVVRLSPNLPETYNTLGLAHS--AL-GNHKSAFDFYVIAAHL--------SPKD----------SAL 104 (687)
Q Consensus 47 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 104 (687)
.|+ ++.|+.++++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 57788888888888885433 222222222 11 2233566666555531 1222 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 162 (687)
+..-+..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344666667777888888888888878877778888888888888888777665554
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.23 Score=41.98 Aligned_cols=45 Identities=29% Similarity=0.304 Sum_probs=29.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIA 94 (687)
Q Consensus 45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 94 (687)
...|+++.|.++.++. ++...|..+|...+..|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566777776666554 45566666677766777766666666665
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.10 E-value=0.47 Score=39.03 Aligned_cols=118 Identities=16% Similarity=0.071 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632 43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122 (687)
Q Consensus 43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 122 (687)
..++-.+|+.++-+-.-. .|..++.-..++..++-.|.+..++-.+.. -+...+.+.-+.||....++..|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777665443322 344456666777777778888777766543 244566666777788888888888
Q ss_pred HHHHHHHHh-----------------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 123 YYIRQAIRA-----------------EPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 123 ~~~~~a~~~-----------------~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
.++++.++- +|.+.+. +..+|.++...|+-++|+.++.......|-
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 888887731 1222222 334555555555555555555555555554
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.00 E-value=1.6 Score=47.58 Aligned_cols=185 Identities=9% Similarity=0.059 Sum_probs=79.0
Q ss_pred hcCCHHHHHHHHHHHHHhC-CC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCC---C---CH----HHHHHHHH
Q 005632 46 AYGNFEQAISLLKEVVRLS-PN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP---K---DS----ALWKQLLT 110 (687)
Q Consensus 46 ~~g~~~~A~~~~~~~l~~~-p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~la~ 110 (687)
..|+.++++..+.+.+... .+ ...+++.+|.++...+ .+++..+...+..+. . .. .+-..+|.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455555655555544321 11 1224444554443333 345555555543221 0 11 23334555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632 111 FAVQKGDTAQAMYYIRQAIRAEPKDI--SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188 (687)
Q Consensus 111 ~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 188 (687)
++...++ +++.+.+...+..+.... .+-+.+|.++...|+.+-....+..+.+...++..-...+|..+...|+.+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 5544443 345555555554322111 2334455555566665444444444443222111112223333345566655
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 233 (687)
+....+.+...........+...+|..|...|+...-...+..+.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 555555444322111111223344555556666544333554444
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.94 E-value=0.84 Score=49.81 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHh
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAA 95 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al 95 (687)
+....|+..+++.+.+.+.|.+.+
T Consensus 234 ~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 234 LTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444455555555555555544
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.93 E-value=0.051 Score=59.29 Aligned_cols=110 Identities=10% Similarity=-0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH
Q 005632 170 VDATKTGAQLFLKCGQTARSIGILEEYLKV--HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK 247 (687)
Q Consensus 170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 247 (687)
...+..+...|.+.|+.++|..+|..+.+. ..-.++...|+.+...+.+.|+.++|.+.|+++... + -..+...+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G--~~PDvvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-G--LTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T--CCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C--CCCcHHHH
Confidence 356788889999999999999999876543 123345558899999999999999999999998765 2 44566777
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHhhhCchhhHHHH
Q 005632 248 VKAGICYLRLGNM-EKAEILFADLQWKNAIDHADLI 282 (687)
Q Consensus 248 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 282 (687)
..+..++.+.|+. ++|..+|+++....-..+...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY 239 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc
Confidence 7888888888874 7888999998776543344333
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.79 E-value=0.65 Score=38.19 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 163 (687)
+.-..++.+++-.|.+..++-.+.+ -+...+.+..+.||....++..|+..++..+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555443322 2334444445555555555555555555554
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.065 Score=57.24 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=81.5
Q ss_pred cCC-hHHHHHHHHHHhccCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 005632 81 LGN-HKSAFDFYVIAAHLSPKDSALWKQLLTFAV--QK-GDTAQAMYYIRQAIRA--------EPKD----------ISL 138 (687)
Q Consensus 81 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~a~~~--------~p~~----------~~~ 138 (687)
.++ ++.|+..+++....+|.....+ ..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 5789999999988888754333 2222221 12 2344566666666531 2222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
+...+..+...|+++-|+.+-+++....|.+...|..|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566778888899999999999999999999999999999999999999998877765
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.58 E-value=0.1 Score=57.03 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh---hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 005632 246 LKVKAGICYLRLGNMEKAEILFADLQW---KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322 (687)
Q Consensus 246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 322 (687)
.+..+...+.+.|+.++|..+|..+.. .....+...|..+...+.+.|+.++|.++|+++....-..+...|..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 444555555666666666666544321 11112555566666666666666666666666655544555556666666
Q ss_pred HHHHhhc-HHHHHHHHHHHHHh
Q 005632 323 CYLSLKE-RAHAIMFFYKALDR 343 (687)
Q Consensus 323 ~~~~~g~-~~~A~~~~~~al~~ 343 (687)
++.+.|+ .++|.++|+++.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 6666665 34556666665554
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.49 Score=40.02 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=19.9
Q ss_pred HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632 80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127 (687)
Q Consensus 80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 127 (687)
..|+++.|.+..+.. ++...|..+|......|+++-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344555554444332 2344444444444444444444444444
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.54 E-value=0.41 Score=43.35 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=79.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632 41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120 (687)
Q Consensus 41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 120 (687)
...+++.|+.++|++.+...++.+|.++.....+...++-.|+++.|...++.+.+++|.....-..+-.+. .
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence 345678889999999999999999999999888888999999999999999998888887644322111110 1
Q ss_pred HHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 121 AMYYIRQAIRA-----EPKDI---SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 121 A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
|...=..++.- .+..+ .....-+......|+.++|...-.++++..|.
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11111112210 11111 22333445556678888888888888777654
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=2.6 Score=42.42 Aligned_cols=173 Identities=11% Similarity=0.082 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hC--chhhH
Q 005632 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADLQW----KN--AIDHA 279 (687)
Q Consensus 208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~ 279 (687)
+...++.++...|++.+|...+.......... .......+.....++...+++..|...++++.. .. |.-..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 44567778888888888887777765432211 122345666677777788888888877777532 11 11234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CCcH---HHHHHHHHHHHHhhc-HHHHHHHHHHHHHhcCC--CHHHHH
Q 005632 280 DLITEVADTLMSLGHSNSALKYYHFLETNAG-TDNG---YLYLKLAECYLSLKE-RAHAIMFFYKALDRFED--NIDARL 352 (687)
Q Consensus 280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~--~~~~~~ 352 (687)
..+...|.++...++|.+|..+|..+..... .+++ ......+.++.-+.. ...--....+.. .++. ....+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~~~~~l~~~~ 297 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcccccccHHHH
Confidence 4566777888888888888888777664310 1111 111112222221111 111111111111 1221 234566
Q ss_pred HHHHHHHHc--CCHHHHHHhcCCCCcCCccc
Q 005632 353 TLASLLLEE--AKEEEAITLLSPPKDLDSLD 381 (687)
Q Consensus 353 ~la~~~~~~--g~~~~A~~~~~~a~~~~~~~ 381 (687)
.+..++... .+++...+.|...+..++..
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~ 328 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVLNEDDLA 328 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence 677777653 57889999998887766643
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.24 E-value=0.29 Score=48.40 Aligned_cols=60 Identities=8% Similarity=0.027 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198 (687)
Q Consensus 139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 198 (687)
...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444566666777777777777777777777777777777777777777777777666543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.19 E-value=0.36 Score=43.74 Aligned_cols=59 Identities=39% Similarity=0.575 Sum_probs=42.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170 (687)
Q Consensus 112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 170 (687)
+++.|+.++|+......++.+|.+......+..+++-.|+++.|...++.+.+++|...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 44567777777777777777777777777777777777777777777777777777654
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.12 E-value=0.24 Score=48.95 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHH-HHHHHHHhccCCCCHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA-FDFYVIAAHLSPKDSALWKQLLTFA 112 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~ 112 (687)
+..+...|......|+.+.|...+.+++......+-.-. . ...+-.+ ...++.. ...+...++..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~ 181 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVED------KVLAHTAKAEAE 181 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 344556677777789999999999999988643211100 0 0112111 1112111 123456678888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165 (687)
Q Consensus 113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 165 (687)
...|++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++...
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987653
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.23 E-value=4.1e-06 Score=81.59 Aligned_cols=275 Identities=14% Similarity=0.049 Sum_probs=189.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179 (687)
Q Consensus 100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 179 (687)
+.+..|..+|.++...+...+|++.|-++ +++..+.....+....|++++=+.+++.+.+. -..+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45677888888888888888888877654 33444555556666788888888888777654 3445555677788
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC
Q 005632 180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN 259 (687)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (687)
|.+.++..+-.+.+. .|+..+ ....|.-++..|.|+.|.-.|..+-. +..++.++..+|+
T Consensus 126 yAk~~rL~elEefl~-----~~N~A~---iq~VGDrcf~e~lYeAAKilys~isN------------~akLAstLV~L~~ 185 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNAH---IQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGE 185 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSSC---THHHHHHHHHSCCSTTSSTTGGGSCC------------CTTTSSSSSSCSG
T ss_pred HHhhCcHHHHHHHHc-----CCCccc---HHHHHHHHHHccCHHHHHHHHHhCcc------------HHHHHHHHHHHHH
Confidence 888888765444332 355554 45788889999999888776654321 3457778888999
Q ss_pred HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005632 260 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYK 339 (687)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 339 (687)
+..|++..+++ .++..|.....++...+++.-|..+--.++- +++.. -.+...|...|-+++-+..++.
T Consensus 186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv--hadeL---~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HADEL---EELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC--CSSCC---SGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcc--cHHHH---HHHHHHHHhCCCHHHHHHHHHH
Confidence 99988877765 3777888899999999999888777655552 33322 1234567889999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632 340 ALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA 416 (687)
Q Consensus 340 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 416 (687)
++.+...+......||.+|.+- +.++-.+.++.....-. -+. .-..-.....|-.+..+|..-.+++.|...
T Consensus 255 glglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriN-ipK---viracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 255 ALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN-IPK---VLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSC-CTT---THHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc-HHH---HHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 9998888999999999988654 45555555553222110 000 000001113567888888888888887543
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.41 Score=48.19 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=88.7
Q ss_pred HHHcchHHHHHHHHHHHHH--Hhc-----cCCCchHHHHHHHHHHHHHcCCHHHHH----------HH----HHHH-hhh
Q 005632 216 LMENNAYEKTLQHIEHAQI--VRF-----SGKELPLKLKVKAGICYLRLGNMEKAE----------IL----FADL-QWK 273 (687)
Q Consensus 216 ~~~~~~~~~A~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~----~~~~-~~~ 273 (687)
+...+++++|..+-...+. ... .-+.....+|+..+.++...|+..... .. ++.+ +..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3455666666665554431 111 113334455666666666666554321 11 1211 223
Q ss_pred CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CC---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-
Q 005632 274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI- 348 (687)
Q Consensus 274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 348 (687)
+.......+..+-+.|...+.++.|..+..+..-... .. ....++.+|.++..+++|.+|.+++..|+...|.+.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 3444677888999999999999999999998752211 11 245678899999999999999999999999887542
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632 349 ------DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420 (687)
Q Consensus 349 ------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 420 (687)
.++-.+.-+-+-+|+..+-.-+-....+. ....|+.++.++ +.|+..+....+.+-
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~---------------~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQK---------------SLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHH---------------HHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHH---------------HHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 23223333434468765422222211110 113577888887 778887765554443
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.36 Score=48.62 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=44.2
Q ss_pred hhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH-----------hCCCchHHHHHHHHHHHHcCChHHHH----------
Q 005632 32 PGVTKMLGE--ASLQYAYGNFEQAISLLKEVVR-----------LSPNLPETYNTLGLAHSALGNHKSAF---------- 88 (687)
Q Consensus 32 ~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~---------- 88 (687)
|++..++.. -..++..+++++|.++....+. .++-.+.+|+..+.++...|+.....
T Consensus 132 pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir 211 (523)
T 4b4t_S 132 AEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILR 211 (523)
T ss_dssp -----------------------------------------------------------------------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHH
Confidence 444444322 3344567777777777665541 12334556666666666666554321
Q ss_pred HHHHHHh-----ccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Q 005632 89 DFYVIAA-----HLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISLRIHLASFYVEIGDYEKA 155 (687)
Q Consensus 89 ~~~~~al-----~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~g~~~~A 155 (687)
..+-.++ ..++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|
T Consensus 212 ~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 212 STMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp THHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 1111111 11221 23445566677777777777777777663 3322 23455667777777777777
Q ss_pred HHHHHHHHHhCCCC
Q 005632 156 AESYEQIQKLFPDN 169 (687)
Q Consensus 156 ~~~~~~~~~~~p~~ 169 (687)
.+++..++...|.+
T Consensus 290 ~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 290 NEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHTSSCSCS
T ss_pred HHHHHHHHHhCCcc
Confidence 77777777665543
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.21 E-value=8.9 Score=44.00 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=121.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 005632 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH-------------------- 200 (687)
Q Consensus 141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------- 200 (687)
.+...+...+.++-+.+ .....|.++...+.+|.++...|++++|..+|+++..--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34555666677765543 445677788888999999999999999999998763210
Q ss_pred C-CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh
Q 005632 201 P-SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH 278 (687)
Q Consensus 201 p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 278 (687)
+ .......|..+..++...+.++.+++..+.+++..+.+++. ....|..+-..+...|+|++|...+...-... ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0 11112235567788888999999999999999874433322 33467778888899999999988886653221 13
Q ss_pred HHHHHHHHHHHHhcCC------------hHHHHHHHHHhh-hccC-CCcHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHh
Q 005632 279 ADLITEVADTLMSLGH------------SNSALKYYHFLE-TNAG-TDNGYLYLKLAECYLSLKERAH-AIMFFYKALDR 343 (687)
Q Consensus 279 ~~~~~~la~~~~~~g~------------~~~A~~~~~~~~-~~~~-~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~ 343 (687)
...+..+...+++.|. .++..+.+..-. .... ...+..|..|-..+...|++.. |.-+|+.+.++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 3444555554554443 333333333211 1101 1223344444555666777665 44567777655
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.17 E-value=2.9 Score=48.02 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NV----DATKTGAQLFLKCGQTARSIGILEE 195 (687)
Q Consensus 136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~ 195 (687)
+..|.....++...|.++.+++..+.+++..+. +. ..|..+-..+...|+|++|...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 344555555666666666666666666655432 22 1344555556666666666555543
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.60 E-value=0.57 Score=47.57 Aligned_cols=81 Identities=20% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
..+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35678899999899999999999999999999999999999999999999999999999988777788888888887765
Q ss_pred c
Q 005632 183 C 183 (687)
Q Consensus 183 ~ 183 (687)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.21 E-value=1 Score=45.81 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148 (687)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 148 (687)
..+..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36777888888888888888888888888888888888888888888888888888888888776677787777777654
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.19 E-value=0.78 Score=46.03 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc--hHHHH
Q 005632 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLK 247 (687)
Q Consensus 171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~ 247 (687)
.++..+|..|...|++++|.+.|.++........ ...++.....++...+++..+...+.++.......... .....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556677777777777777777777665433222 12355566666677777777777777766553221111 11233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 005632 248 VKAGICYLRLGNMEKAEILFADLQ 271 (687)
Q Consensus 248 ~~l~~~~~~~~~~~~A~~~~~~~~ 271 (687)
...|.++...++|..|...|-.+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 344445555556666555555543
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.37 E-value=2 Score=43.07 Aligned_cols=100 Identities=4% Similarity=-0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----chhhHHHH
Q 005632 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-----AIDHADLI 282 (687)
Q Consensus 208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~ 282 (687)
++..+|..+...|++++|.+.|.++.... .+......++.....++...+++..+...+.++.... +.......
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678888888888888888888876652 2334556677777777777788877777777764321 11122334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632 283 TEVADTLMSLGHSNSALKYYHFLETN 308 (687)
Q Consensus 283 ~~la~~~~~~g~~~~A~~~~~~~~~~ 308 (687)
...|.++...++|.+|...|-.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44555666666777776666655433
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.32 E-value=9.6 Score=35.75 Aligned_cols=23 Identities=4% Similarity=-0.311 Sum_probs=17.5
Q ss_pred HHHHHcCCchHHHHHHHHHHHHh
Q 005632 402 HIYRAKGMPEDFVDAIFPLVCES 424 (687)
Q Consensus 402 ~~~~~~g~~~~A~~~~~~~~~~~ 424 (687)
..|...|+...|...+....++.
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Confidence 34567888888888888877665
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.07 E-value=13 Score=35.16 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--CCC----
Q 005632 31 SPGVTKMLGEASLQYAYGNF---EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKD---- 101 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~---- 101 (687)
+..+...+.+-......|+| =+|-+.++.+.. =|.+.++|++|++++......- -..
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~--------------Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg 74 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAA--------------RYSKQGNWAAAVDILASVSQTLLRSGQGGSG 74 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHH--------------HHHhhcCHHHHHHHHHHHHHHHHHCCCcchH
Confidence 34566777777788888998 777777765533 3566777777777654432110 000
Q ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632 102 SALWKQLLTFAVQKGD--TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 178 (687)
Q Consensus 102 ~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 178 (687)
.+.-..+..+|...+- -++...-+.+++...|. .++ ... =..+|+.+-.+.-...-.++..+..+|.
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~-r~~---------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV-RKR---------FVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH-HHH---------HHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH-HHH---------HHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 1111122233333221 12222233333333332 221 000 0122232222211112357788888888
Q ss_pred HHHHcCChHHHHHHH
Q 005632 179 LFLKCGQTARSIGIL 193 (687)
Q Consensus 179 ~~~~~g~~~~A~~~~ 193 (687)
.|.+.+++.+|..+|
T Consensus 145 ~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHccCCHHHHHHHH
Confidence 888888888887776
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.43 E-value=31 Score=32.62 Aligned_cols=168 Identities=14% Similarity=0.046 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh---CCC---chHHHHHHHHHHHHcCC--hHHHHHHHHHHhccCCC-CHHHHHHHH
Q 005632 39 GEASLQYAYGNFEQAISLLKEVVRL---SPN---LPETYNTLGLAHSALGN--HKSAFDFYVIAAHLSPK-DSALWKQLL 109 (687)
Q Consensus 39 ~~a~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~-~~~~~~~la 109 (687)
..+.-|.++++|++|++++...... ... -.+.-..+..+|...+- -++...-+.+.+...|. .++- ..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~-- 116 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KR-- 116 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HH--
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HH--
Confidence 4577788999999999987665321 111 11222223344444331 12233333333333332 2210 00
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 189 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 189 (687)
=..+|+.+-.+.-...-.+++.+..+|..|...+++.+|..+|-. . ..+.++.+..+-.-+...+
T Consensus 117 -------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g-~~~s~~~~a~mL~ew~~~~----- 181 (336)
T 3lpz_A 117 -------FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--G-TKESPEVLARMEYEWYKQD----- 181 (336)
T ss_dssp -------HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--S-CTTHHHHHHHHHHHHHHTS-----
T ss_pred -------HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--c-CCchHHHHHHHHHHHHHhc-----
Confidence 012333333331112336799999999999999999999888731 1 1112233322222222221
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
.|...+. ........|...++...|...+....+.
T Consensus 182 ----------~~~e~dl-fiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 182 ----------ESHTAPL-YCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp ----------CGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------CCccHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1222221 1223344567778888888877665553
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.62 E-value=38 Score=31.74 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632 31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVI 93 (687)
Q Consensus 31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 93 (687)
...+...+.+-......|+|=+|-+.++.+... |.+.+++++|++.+..
T Consensus 10 ~~~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R--------------y~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 10 QAKLAKTLQRFENKIKAGDYYEAHQTLRTIANR--------------YVRSKSYEHAIELISQ 58 (312)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH--------------HHHhcCHHHHHHHHHH
Confidence 335677777788888889998888888766432 4455666666665443
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.37 E-value=46 Score=37.18 Aligned_cols=46 Identities=20% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH----HHHHHHHHHHH
Q 005632 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLF-PDNVD----ATKTGAQLFLK 182 (687)
Q Consensus 137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~----~~~~la~~~~~ 182 (687)
..|.....++...+-++-+++..+.+++.. ++++. .+..+-.....
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 467778888888899999999888888754 34443 44444444433
No 269
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=69.96 E-value=22 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHH-HHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN--LPETY-NTLGLAH 78 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~-~~l~~~~ 78 (687)
.++.++..|..+++.++|.+|..+|+++.....+ -..++ +.++.|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999998765332 22233 5555553
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.96 E-value=45 Score=26.63 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYN 72 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 72 (687)
.+...-+..|....-.|..++.+++..+.....|-...-|+
T Consensus 5 ~el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ 45 (172)
T 1wy6_A 5 SEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWF 45 (172)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCcccccee
Confidence 35566677899999999999999999999888775444443
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.75 E-value=68 Score=35.83 Aligned_cols=128 Identities=4% Similarity=-0.109 Sum_probs=74.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHcC
Q 005632 74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKD--ISLRIHLASFYVEIG 150 (687)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~--~~~~~~la~~~~~~g 150 (687)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- .+.+ .........+.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll---- 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA---- 887 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH----
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc----
Confidence 455556677766543 344566677777778888888888888888888876431 1111 00000000000
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCc--HHHHHHHHHHHHHc
Q 005632 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DAD--LSVIDLLVAILMEN 219 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~--~~~~~~la~~~~~~ 219 (687)
...+........|.....++...+-++-++...+.+++.... +.. ..+|..+-......
T Consensus 888 ----------~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 888 ----------EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp ----------HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 000111112346778889999999999999999999986433 322 13455555554443
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=65.68 E-value=0.0062 Score=59.84 Aligned_cols=336 Identities=15% Similarity=0.134 Sum_probs=180.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 116 (687)
.-.-|..++..|.|+.|.-+|..+ .-|..|+.++..+|+|..|.+..++| +++..|-.....+...+
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 213 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCch
Confidence 334466666666666666555432 23445566666777777776665554 44556777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 196 (687)
Q Consensus 117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 196 (687)
++.-|..+--..+- .|+. +-.+...|...|.+++-+..++..+.+..-+......||.+|.+- ++++-+++++..
T Consensus 214 EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 214 EFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp TTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred HHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 77777666555443 2222 123445677788888888888888888777888888888777653 566666665543
Q ss_pred HHhC--CCCC----cHHHHHHHHHHHHHcchHHHHHHHHHH-HHHHhcc-------CCCchHHHHHHHHHHHHHcCCHHH
Q 005632 197 LKVH--PSDA----DLSVIDLLVAILMENNAYEKTLQHIEH-AQIVRFS-------GKELPLKLKVKAGICYLRLGNMEK 262 (687)
Q Consensus 197 ~~~~--p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 262 (687)
...- |.-. ....|..+..+|..-.+|+.|....-. ....+.. ..-.+.++++.....|.
T Consensus 289 ~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL------- 361 (624)
T 3lvg_A 289 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL------- 361 (624)
T ss_dssp SSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHT-------
T ss_pred HHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHH-------
Confidence 2211 1100 112466777777777777766543311 1111000 01112233332222222
Q ss_pred HHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh----------ccCCCcHHHHHHHHHHHHHhhcHHH
Q 005632 263 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET----------NAGTDNGYLYLKLAECYLSLKERAH 332 (687)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~ 332 (687)
+. .|..+..+-.++...=+....+..+++.-. ....++..+--.+-.+|....|++.
T Consensus 362 ---------~e----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 362 ---------EF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp ---------TS----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred ---------Hh----ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 11 222222222233333334444444443211 1134455566667777888887764
Q ss_pred HHHHHH---------HHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCC------CCcCCcccCCCCCCChhhhhHHH
Q 005632 333 AIMFFY---------KALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSP------PKDLDSLDMNSDKSNPWWLNEKI 396 (687)
Q Consensus 333 A~~~~~---------~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
=....+ -+-++. -+-.+.+.--+.+|.+.++|++++.+.++ +++....+. +.++
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~----------~~el 498 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESK----------DTEL 498 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCC----------CTTH
T ss_pred HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcC----------CHHH
Confidence 322111 011111 12245556667888899999999988763 222222221 2236
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 005632 397 IMKLCHIYRAKGMPEDFVDAIFPL 420 (687)
Q Consensus 397 ~~~la~~~~~~g~~~~A~~~~~~~ 420 (687)
-..|-+.+...|+.+-...++-..
T Consensus 499 aeeLL~yFv~~g~~EcF~a~LytC 522 (624)
T 3lvg_A 499 AEELLQWFLQEEKRECFGACLFTC 522 (624)
T ss_dssp HHHHHHHHHHHCSTHHHHHHHHHT
T ss_pred HHHHHHHHHHcCchHHHHHHHHHH
Confidence 666777777788777655544443
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.94 E-value=38 Score=27.92 Aligned_cols=65 Identities=6% Similarity=0.050 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHH-----H-HHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PET-----Y-NTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~-----~-~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
......+..+..++..|+|-+|-+.++.+-...+.. ... . ...|....+.|+..-|...+.+++.
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567888999999999999999999988776543 112 2 2233344567888888888887765
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.12 E-value=1.8e+02 Score=30.60 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=44.1
Q ss_pred HHHHHHHH-HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632 54 ISLLKEVV-RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132 (687)
Q Consensus 54 ~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 132 (687)
+.-+++.+ +..|.+-.. ..-.++.-.|+|+.|+.++-+. + ....+++.++.. ..|-... -...+..+
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~---~-~vdAVH~AIaL~--~~gLL~~----~~~lls~~ 348 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF---S-EMDAVHLAIGLA--SLKLFKI----DSSTRLTK 348 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT---C-HHHHHHHHHHHH--HTTC---------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc---C-chhHHHHHHHHH--HcCCccC----CCcccccC
Confidence 45555555 334433222 3556677789999999988754 1 112234444433 3444332 12233333
Q ss_pred CCCHHHHHHHHHHH------HHcCCHHHHHHHHHHH
Q 005632 133 PKDISLRIHLASFY------VEIGDYEKAAESYEQI 162 (687)
Q Consensus 133 p~~~~~~~~la~~~------~~~g~~~~A~~~~~~~ 162 (687)
|+.+ ..+++.+. +...+..+|+++|--+
T Consensus 349 ~~~~--~lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 349 KPKR--DIRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp --------CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred CCcc--cccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3322 23333332 3567888888887765
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.09 E-value=27 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=9.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhccC
Q 005632 75 GLAHSALGNHKSAFDFYVIAAHLS 98 (687)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~al~~~ 98 (687)
|..+...|++++|..+|-+|+...
T Consensus 24 GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 24 GEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHc
Confidence 333333333333333333333333
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.70 E-value=54 Score=23.47 Aligned_cols=30 Identities=27% Similarity=0.159 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
.+..++.+|...-..|+|++|+.+|.++++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455677788888888999998888888765
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.40 E-value=48 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET 70 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 70 (687)
-+..|..+...|++++|...|-+++...|.-.+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3567999999999999999999999998854443
No 278
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.48 E-value=18 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
.....+..|+.+...|+|+.|+.+|+.+++.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4566778899999999999999999988764
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=52.32 E-value=16 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
.+..++.+|...-..|+|++|+.+|..+++.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777888888889998888888887653
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.53 E-value=71 Score=22.79 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
.+..++.+|...-..|+|++|+.+|..+++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455677788888888888888888887765
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.36 E-value=56 Score=28.20 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=32.2
Q ss_pred HHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 005632 574 ELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG 621 (687)
Q Consensus 574 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 621 (687)
-+.-....+|+..|.+++|.+.++.....+|.+...-.-+..+.....
T Consensus 115 llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 115 LVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 334455678888899999999999888876555545555555544433
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.14 E-value=27 Score=25.67 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+-..+..++.+|...-..|+|++|+.+|..+++
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344666778888888888999888888887765
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.07 E-value=1.2e+02 Score=24.70 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------hCchhhHHHHHHHHHHHH
Q 005632 219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW--------KNAIDHADLITEVADTLM 290 (687)
Q Consensus 219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~la~~~~ 290 (687)
.....-+...|+..+..+..++|......+..=..-.--.....-..++++++. .+.+....+|...+...
T Consensus 3 ~~~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~- 81 (152)
T 4a1g_A 3 MDTPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN- 81 (152)
T ss_dssp -CHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-
T ss_pred CchHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-
Q ss_pred hcCChHHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 005632 291 SLGHSNSALKYYHFLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361 (687)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 361 (687)
+++.++|.-+... .....+..|...|..+...|++.+|..+|+..++....-.+-+...-..+...
T Consensus 82 -----~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 -----SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp -----SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
No 284
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=45.09 E-value=70 Score=23.51 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-H-----HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLP-E-----TYNTLGLAHSALGNHKSAFDFYVIAAH 96 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~al~ 96 (687)
+..|..++..|+|=+|=+.++.+-...|+.. . +....|......|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4567778888888888888888877775421 1 222223334456666 6667766654
No 285
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.68 E-value=1.2e+02 Score=24.28 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 287 DTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
..+...|+-++-.+.+..++.. .+.+|..++.+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455666666666666665443 5667778888888888888888888887777654
No 286
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=44.57 E-value=1.8e+02 Score=26.23 Aligned_cols=189 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCcccccchhhhhhccccCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC-chHHHHHHHHHHHH-c
Q 005632 7 GGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS---PN-LPETYNTLGLAHSA-L 81 (687)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-~~~~~~~l~~~~~~-~ 81 (687)
|..+.++|=.-+-+.++..+...-+.+-..++..|....+.++|++.+...+++.+.+ +. +.+-...+..+|-. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvI 80 (260)
T 2npm_A 1 GILRTQHTIRDSELNIKNSKMSDSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAV 80 (260)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHH
T ss_pred CcccccccCCChhhcCcccccccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHhccCC--CCH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632 82 GNHKSAFDFYVIAAHLSP--KDS----------------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS 137 (687)
Q Consensus 82 g~~~~A~~~~~~al~~~p--~~~----------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 137 (687)
|....+...+...-+... .+. ++...+-..+.-.-.-.++.-+|.++.. +...
T Consensus 81 g~rR~swRiissieqke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKG---DYyR 157 (260)
T 2npm_A 81 GSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKG---DYHR 157 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHH---HHHH
T ss_pred ccchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhc---cHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH---HHHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQK----LFPDNV---DATKTGAQLFLK-CGQTARSIGILEEYLK 198 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 198 (687)
.+.....--.+..-.+.|...|+.+.. +.|.+| ....+.+..|+. +++.++|....++++.
T Consensus 158 YlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 158 YISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.82 E-value=49 Score=32.98 Aligned_cols=89 Identities=7% Similarity=0.011 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHhCCCC------------H----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C------CCcH
Q 005632 151 DYEKAAESYEQIQKLFPDN------------V----DATKTGAQLFLKCGQTARSIGILEEYLKVHP--S------DADL 206 (687)
Q Consensus 151 ~~~~A~~~~~~~~~~~p~~------------~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~------~~~~ 206 (687)
..+++...+.+++...-++ - .....+-.+|++.|+..-+...++.+-...+ . ....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 3567777777877762211 1 1233566889999999999999876655432 1 1112
Q ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHH-hccC
Q 005632 207 SVIDLLVAILMENNAYEKTLQHIEHAQIV-RFSG 239 (687)
Q Consensus 207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~ 239 (687)
...+.+|.++...++|.+|.+.+..|... .+..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 45778999999999999999999999988 6543
No 288
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.43 E-value=37 Score=36.01 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 005632 36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG 82 (687)
Q Consensus 36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 82 (687)
..+..|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666555443
No 289
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.07 E-value=26 Score=25.16 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 005632 114 QKGDTAQAMYYIRQAI 129 (687)
Q Consensus 114 ~~g~~~~A~~~~~~a~ 129 (687)
..|++++|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555554444443
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.98 E-value=2.1e+02 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 63 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 63 (687)
.....+..|..++..|++++|+..|+.++..
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999875
No 291
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.76 E-value=56 Score=28.33 Aligned_cols=34 Identities=6% Similarity=-0.074 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 347 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 347 (687)
....+.+|.++...++|.+|.+.+..|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4566778888888888888888888888887755
No 292
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.42 E-value=48 Score=23.80 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
..+..++.+|...-..|+|++|+.+|..+++
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555667777777778888888888877765
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.37 E-value=81 Score=31.41 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhccC-------C--CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-cCCC
Q 005632 283 TEVADTLMSLGHSNSALKYYHFLETNAG-------T--DNGYLYLKLAECYLSLKERAHAIMFFYKALDR-FEDN 347 (687)
Q Consensus 283 ~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 347 (687)
..+-.+|++.++..-+..+++.+..... | ......+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3455777788888777777765443211 1 23467788999999999999999999999998 7754
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.94 E-value=65 Score=27.88 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632 138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168 (687)
Q Consensus 138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 168 (687)
..+.+|.++...++|.+|.+.+..++...|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 4555555555556666666666655555554
No 295
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=39.28 E-value=1.6e+02 Score=24.12 Aligned_cols=86 Identities=8% Similarity=0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChH-HHHHHHHHHhccC--CCCHHHHHHHH
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHK-SAFDFYVIAAHLS--PKDSALWKQLL 109 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~--p~~~~~~~~la 109 (687)
...+..|...|-..+|.+.+..++.. +|. .....+.+|..|....++. +-.+.....+.+. |.....
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~Y----- 80 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLY----- 80 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHH-----
Confidence 44566688888888998888887654 443 3457788888888876654 3333333333332 222233
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 005632 110 TFAVQKGDTAQAMYYIRQA 128 (687)
Q Consensus 110 ~~~~~~g~~~~A~~~~~~a 128 (687)
.++.-.|++++|+......
T Consensus 81 WIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 81 WIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHhc
Confidence 3445568888887766554
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=39.27 E-value=37 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
=.+|..+...|.|++||++.+++..
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3569999999999999999887653
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.84 E-value=1.8e+02 Score=23.88 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHH------HHHHHHcCCHHHHHHHHHHHHH
Q 005632 71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQL------LTFAVQKGDTAQAMYYIRQAIR 130 (687)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l------a~~~~~~g~~~~A~~~~~~a~~ 130 (687)
-+..|..++..|+|-+|-+.++.+-...+.. ...|..+ |......|+..-|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3555677777888888888888887765443 2222222 2234556777777777777665
No 298
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.49 E-value=68 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.094 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632 316 LYLKLAECYLSLKERAHAIMFFYKAL 341 (687)
Q Consensus 316 ~~~~la~~~~~~g~~~~A~~~~~~al 341 (687)
.+-..+..+...|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455666666666666666665554
No 299
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.75 E-value=76 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005632 38 LGEASLQYAYGNFEQAISLLKEVVRLSPN 66 (687)
Q Consensus 38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 66 (687)
+..|..+...|+++.|+..|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35688888888898888888888877664
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.32 E-value=44 Score=24.61 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCC
Q 005632 72 NTLGLAHSALGNHKSAFDFYVIAAHLSPK 100 (687)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 100 (687)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566677777777777777777666554
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.41 E-value=2e+02 Score=23.69 Aligned_cols=47 Identities=2% Similarity=-0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235 (687)
Q Consensus 189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 235 (687)
+..+|..+....-....+..|...|..+...|++.+|.++|...++.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555555554444333334555566666666666666666666655
No 302
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=33.17 E-value=59 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
.+..++.+|...-..|+|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455567777777778888888888877665
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.08 E-value=5.5e+02 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005632 37 MLGEASLQYAYGNFEQAISLLKEV 60 (687)
Q Consensus 37 ~~~~a~~~~~~g~~~~A~~~~~~~ 60 (687)
.......+++.|++++|.++.++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444556788999999999988765
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.21 E-value=58 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632 317 YLKLAECYLSLKERAHAIMFFYKALDR 343 (687)
Q Consensus 317 ~~~la~~~~~~g~~~~A~~~~~~al~~ 343 (687)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677777778888888888877653
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.96 E-value=1.2e+02 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=9.6
Q ss_pred HHHhhcHHHHHHHHHHHHH
Q 005632 324 YLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 324 ~~~~g~~~~A~~~~~~al~ 342 (687)
.-..|++++|+.+|..+++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3445555555555554443
No 306
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=24.80 E-value=3.8e+02 Score=24.08 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 005632 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAE---PKDISLRIHLASFY-VEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQL 179 (687)
Q Consensus 105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 179 (687)
+..++.+..+.++|++...+.+++...+ .-+.+-...+..+| -..|....+...+....+... ........+..-
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~~i~~ 90 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIRE 90 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q ss_pred HHHc------CChHHHHHHHHHHHHhCCCCCcHHHHH--HHHHHHHHcchH----------HHHHHHHHHHHHH----hc
Q 005632 180 FLKC------GQTARSIGILEEYLKVHPSDADLSVID--LLVAILMENNAY----------EKTLQHIEHAQIV----RF 237 (687)
Q Consensus 180 ~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~~--~la~~~~~~~~~----------~~A~~~~~~~~~~----~~ 237 (687)
|... .-..+.+.+++..+--...+.+..+++ ..|..|...-.+ +.|...|+.+..+ .+
T Consensus 91 yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 170 (260)
T 1o9d_A 91 YRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELA 170 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred cCCCchHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhh
Q 005632 238 SGKELPLKLKVKAGICYLR-LGNMEKAEILFADLQWK 273 (687)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~ 273 (687)
+.+|....+..+.+..|+. .++.++|..+.+++...
T Consensus 171 pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 171 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 307
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=24.62 E-value=3.6e+02 Score=23.77 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Q 005632 34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHS 79 (687)
Q Consensus 34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 79 (687)
-..++..|....+.++|++.+...+++.+.++. +.+-...+..+|-
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 355677889999999999999999999988775 4445555555553
No 308
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=23.10 E-value=51 Score=23.91 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHHHHhhCCCChhhh
Q 005632 658 ASHHQDAARCYLEAYKLLPENPLIN 682 (687)
Q Consensus 658 ~~~~~~A~~~~~~a~~~~P~~p~~~ 682 (687)
.+....++..-..+++.+|+||.++
T Consensus 29 a~~~~~~l~~Al~~L~~~psNPa~L 53 (92)
T 2g0u_A 29 VKDLNKQLQDAQANLTKNPSDPTAL 53 (92)
T ss_dssp THHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4566677777777888999999875
No 309
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.09 E-value=4e+02 Score=23.72 Aligned_cols=161 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-cCChHHHHHHHHHHhccCCCCH----------
Q 005632 35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSA-LGNHKSAFDFYVIAAHLSPKDS---------- 102 (687)
Q Consensus 35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~---------- 102 (687)
..++..|...-+.++|++.....+++...++. +.+-...+..+|-. .|....+...+....+......
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~ 84 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRA 84 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHH
Q ss_pred --------------HHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 005632 103 --------------ALWKQLLTFAVQKGDTA--QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL- 165 (687)
Q Consensus 103 --------------~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 165 (687)
+++..+-..+.-.-.-. ++.-+|.++.. +....+...+.--.+..-.+.|...|+.+..+
T Consensus 85 yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKG---DyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA 161 (248)
T 3uzd_A 85 YREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKG---DYYRYLAEVATGEKRATVVESSEKAYSEAHEIS 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhh---hHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----CCCCH---HHHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 005632 166 ----FPDNV---DATKTGAQLFLK-CGQTARSIGILEEYLK 198 (687)
Q Consensus 166 ----~p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 198 (687)
.|.+| ....+.+..|+. .++.++|....++++.
T Consensus 162 ~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 162 KEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.80 E-value=1.3e+02 Score=31.72 Aligned_cols=51 Identities=18% Similarity=0.014 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 005632 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKE 364 (687)
Q Consensus 314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 364 (687)
.......|......|+|.-|.+....++..+|+|.++...++.+|.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 345566788888999999999999999999999999999999999887743
No 311
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.79 E-value=1.2e+02 Score=22.86 Aligned_cols=30 Identities=30% Similarity=0.210 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+++..+..|....+.|+|++|.+.++++-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667778888888888888888887643
No 312
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.57 E-value=1.2e+02 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+++..+..|....+.|+|++|.+.++++-+
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667778888888888888888887643
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.13 E-value=3.9e+02 Score=23.18 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632 118 TAQAMYYIRQAIRAEPKDISL--------RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182 (687)
Q Consensus 118 ~~~A~~~~~~a~~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 182 (687)
.+.|+..++..-+..+-.... ......++...|.|++|.+.+++.+..++.+......|..+-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 456666666665555432211 12233456778888888888888887766666566555555433
No 314
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=21.40 E-value=3.4e+02 Score=22.21 Aligned_cols=11 Identities=27% Similarity=0.078 Sum_probs=4.4
Q ss_pred CCHHHHHHHHH
Q 005632 258 GNMEKAEILFA 268 (687)
Q Consensus 258 ~~~~~A~~~~~ 268 (687)
|++++|+.+..
T Consensus 87 g~~~eAlDiA~ 97 (161)
T 2ynq_A 87 SQSEEALELAR 97 (161)
T ss_dssp TCHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 44444443333
No 315
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.59 E-value=1.6e+02 Score=21.09 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=11.1
Q ss_pred HHHHHhhcHHHHHHHHHHHHH
Q 005632 322 ECYLSLKERAHAIMFFYKALD 342 (687)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~al~ 342 (687)
.-.-..|++++|+.+|..+++
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333455555555555555543
No 316
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.38 E-value=4.5e+02 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=11.5
Q ss_pred HhhcHHHHHHHHHHHHH
Q 005632 326 SLKERAHAIMFFYKALD 342 (687)
Q Consensus 326 ~~g~~~~A~~~~~~al~ 342 (687)
-++++++|....++++.
T Consensus 185 il~~~~~A~~lAk~afd 201 (234)
T 2br9_A 185 ILNSPDRACRLAKAAFD 201 (234)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 36777777777666654
No 317
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.31 E-value=1.4e+02 Score=22.62 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005632 33 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 62 (687)
Q Consensus 33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 62 (687)
+++..+..|....+.|+|++|.+.++++-+
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667778888888888888888887643
No 318
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.14 E-value=5.9e+02 Score=24.54 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHcchHHHHHHHHHHHHHHh-------------ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh------
Q 005632 212 LVAILMENNAYEKTLQHIEHAQIVR-------------FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW------ 272 (687)
Q Consensus 212 la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------ 272 (687)
+..+.....+.++|++++++..... .........+...++..|...|+.++|...++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred -hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632 273 -KNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307 (687)
Q Consensus 273 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 307 (687)
..+......+...+..+...+++..+....-..+.
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Done!