BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005633
         (686 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KYB|A Chain A, Solution Structure Of Cpr82g From Clostridium Perfringens.
           N Structural Genomics Consortium Target Cpr82g
          Length = 60

 Score = 30.8 bits (68), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 410 GVANVNNSLNPASASSTASTIVGLLHQNS 438
           G+ NV++SLN  S++ST+S ++G L  N+
Sbjct: 4   GIVNVSSSLNVRSSASTSSKVIGSLSGNT 32


>pdb|2KT8|A Chain A, Solution Nmr Structure Of The Cpe1231(468-535) Protein
           From Clostridium Perfringens, Northeast Structural
           Genomics Consortium Target Cpr82b
          Length = 76

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 406 ATSNGVANVNNSLNPASASSTASTIVGLLHQNS 438
           A   G+ NV++SLN    +ST+S ++G L  N+
Sbjct: 1   AEKTGIVNVSSSLNVREGASTSSKVIGSLSGNT 33


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.128    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,547,931
Number of Sequences: 62578
Number of extensions: 495313
Number of successful extensions: 1311
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 8
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)