BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005633
(686 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 613 bits (1581), Expect = e-174, Method: Compositional matrix adjust.
Identities = 411/650 (63%), Positives = 456/650 (70%), Gaps = 92/650 (14%)
Query: 57 RSPAKPVYEPGMCARRLTHYMYQQQHRPEVRFSHHDESVVSLWCITIVICNSRVFVQDNN 116
R P KPVYEPGM A+RLT YMY+QQHRPE DNN
Sbjct: 294 RPPLKPVYEPGMGAQRLTQYMYRQQHRPE----------------------------DNN 325
Query: 117 IEFWRKFVAEYFAPNAKKKWCVSMYGSGRQATGVFPQDVWHCEICNRKPGRGFEATVEVL 176
IEFWRKFVAEYFAPNAKK+WCVSMYGSGRQ TGVFPQDVWHCEICNRKPGRGFEAT EVL
Sbjct: 326 IEFWRKFVAEYFAPNAKKRWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVL 385
Query: 177 PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVF 236
PRLFKIKYESGTLEELLYVDMPRE QN+SGQIVL+YAKA QESVFE LRVVRDGQLRIVF
Sbjct: 386 PRLFKIKYESGTLEELLYVDMPRESQNSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVF 445
Query: 237 SPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCN 296
SPDLKI SWEFCARRHEELIPRRLLIPQVSQLG+AAQKYQ A QNA+++ + PELQNNCN
Sbjct: 446 SPDLKIFSWEFCARRHEELIPRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCN 505
Query: 297 MFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAK 356
MFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR T TGP+ESLAK
Sbjct: 506 MFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAK 565
Query: 357 FPRRTSGASGFHSPS-QQPEDQLQ-----------------QQQQQQQTVGQNSNSE-SS 397
FPRRT +S PS QQ DQL+ QQQQQQQTV QN+NS+ SS
Sbjct: 566 FPRRTGPSSALPGPSPQQASDQLRQQQQQQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSS 625
Query: 398 VQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNN-ASSPYGG 456
Q MQ SNG VN + N ASAS++ S+I GL+HQNSM R QN N +SPYGG
Sbjct: 626 RQVALMQGNPSNG---VNYAFNAASASTSTSSIAGLIHQNSMKGRHQNAAYNPPNSPYGG 682
Query: 457 SSVQMPSPGSSNNI----PQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPA 512
+SVQM SP SS + Q Q N FQSPT SS+NN S + + + NHM S +SPA
Sbjct: 683 NSVQMQSPSSSGTMVPSSSQQQHNLPTFQSPTSSSNNN--NPSQNGIPSVNHMGSTNSPA 740
Query: 513 NISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSL 572
+QQ +GE D + S+VQKIL+E+++ + + S GG MVG GS
Sbjct: 741 ---MQQ---AGEVD----------GNESSSVQKILNEILMNNQAHNNS-SGGSMVGHGSF 783
Query: 573 GNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRA 632
GND K ++ ++G L+ NG VNNN GG G GGG+GQS NGI
Sbjct: 784 GNDGKGQANVNSSGV---------LLMNGQVNNNNNTNIGGAGGFGGGIGQSMAANGINN 834
Query: 633 AMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFNNLQFDW 682
GNNS+MNGRVGM M RD N QQDLGNQL LGAVNGFNN FDW
Sbjct: 835 INGNNSLMNGRVGM--MVRDP--NGQQDLGNQL---LGAVNGFNN--FDW 875
>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=adn1 PE=3 SV=1
Length = 391
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 133/314 (42%), Gaps = 65/314 (20%)
Query: 86 VRFSHHDESVVSLWCITIVICNSRVFVQDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGR 145
+R ++E ++S W T+ ++I +WR+FV +++
Sbjct: 22 LRLLQYNEQLMSGWESTM----------KDDIGYWRRFVHDFYT---------------- 55
Query: 146 QATGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYV-DMPREYQNA 204
G F ++ + + N++P + FE + LPR + Y G L+++ ++ +E+
Sbjct: 56 -EKGTFRYNIDYKDSPNQEP-KLFELSYAALPRFLYLSY-CGKLKKMSFLLGNTKEFAIP 112
Query: 205 SGQIVLDYAKAIQESVFEQ----LRVVRDGQLRIVF--SPDLKICSWEFCARRHEELIPR 258
+ ++ ++A S+ Q ++V+ G LR F +P LK+ S EF A H E + R
Sbjct: 113 NNGYFVESSRA---SILYQYQGGVQVIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYLLR 169
Query: 259 RLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQN-NCNMFVASARQLAKALEVPLVNDL 317
L+ S + ++ Q Q+ P ++ N N + VN+
Sbjct: 170 ELMT-NASLALSQSRPPQNQIQHDGVKSEDPSSESVNINSSSSLLPDSP-------VNEY 221
Query: 318 GYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPEDQ 377
G +R ++I+E ++ M+DLI ++ +GP +L KF
Sbjct: 222 GLEPHIMRFMEITETISGMRDLIAFTLAQRSGPTSALHKF-----------------ATA 264
Query: 378 LQQQQQQQQTVGQN 391
LQQQ Q Q++ N
Sbjct: 265 LQQQHQMQKSTSSN 278
>sp|P48383|SAK1_SCHPO Protein sak1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sak1 PE=1 SV=2
Length = 766
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 409 NGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSN 468
+ + N N + + AS A+ IV +++ V +S PY +P GS
Sbjct: 212 SSIQNTNQRVESSPASVNAAAIV-----------RKSAVTPSSDPYNSPPPSIPLLGSQT 260
Query: 469 NI--------PQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPA 520
N+ PQA P PS S SN PPQ SHS++ + S S P S P
Sbjct: 261 NLQLAPSFAAPQAHPLPSHL-----SQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQ 315
Query: 521 LSGEADP 527
S P
Sbjct: 316 FSSSFVP 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,835,717
Number of Sequences: 539616
Number of extensions: 11743280
Number of successful extensions: 128566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 1839
Number of HSP's that attempted gapping in prelim test: 63297
Number of HSP's gapped (non-prelim): 40534
length of query: 686
length of database: 191,569,459
effective HSP length: 124
effective length of query: 562
effective length of database: 124,657,075
effective search space: 70057276150
effective search space used: 70057276150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)