Query 005633
Match_columns 686
No_of_seqs 136 out of 180
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 81.9 0.3 1E-05 51.1 0.3 11 17-27 380-390 (449)
2 3iot_A Maltose-binding protein 54.7 7.4 0.00025 40.6 3.5 12 16-27 372-383 (449)
3 4b8c_D Glucose-repressible alc 38.9 7.7 0.00026 44.0 0.6 12 242-253 318-329 (727)
4 3osr_A Maltose-binding peripla 19.3 9.9E+02 0.034 26.8 13.4 33 328-360 618-650 (653)
5 1nwd_B GAD, glutamate decarbox 14.2 80 0.0027 22.0 1.6 13 114-126 12-24 (28)
6 2wur_A Green fluorescent prote 13.6 5E+02 0.017 26.4 7.9 74 166-251 66-147 (236)
7 1yyb_A Programmed cell death p 13.3 1E+02 0.0034 21.5 2.0 16 12-27 6-21 (27)
8 3ai5_A Yeast enhanced green fl 11.5 5.9E+02 0.02 26.5 8.1 90 149-252 54-151 (307)
9 1w8x_M Protein P30, protein P, 10.8 1.6E+02 0.0054 24.8 2.8 22 449-471 4-25 (83)
10 1uxx_X Xylanase U; carbohydrat 10.3 1.8E+02 0.0062 25.9 3.3 18 231-248 110-127 (133)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=81.87 E-value=0.3 Score=51.11 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 005633 17 QQQRYLQLQQQ 27 (686)
Q Consensus 17 ~~~~~~~~~~~ 27 (686)
+||.+.|.|||
T Consensus 380 ~~~~~~~~~~~ 390 (449)
T 3iot_A 380 AFESLKSFQQQ 390 (449)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 33445544433
No 2
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=54.71 E-value=7.4 Score=40.60 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 005633 16 LQQQRYLQLQQQ 27 (686)
Q Consensus 16 ~~~~~~~~~~~~ 27 (686)
+--..+.++||+
T Consensus 372 ~~~~~~~~~~~~ 383 (449)
T 3iot_A 372 ATLEKLMKAFES 383 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 334444444433
No 3
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=38.90 E-value=7.7 Score=43.97 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=4.7
Q ss_pred eeEEEEeeccee
Q 005633 242 ICSWEFCARRHE 253 (686)
Q Consensus 242 IE~wEF~~~sHE 253 (686)
++.+++.-...+
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 344444333333
No 4
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=19.28 E-value=9.9e+02 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.6
Q ss_pred hHHHHHhchHHHHHHhhhcCCChHHHHhhhhhc
Q 005633 328 QISEVVNSMKDLIDYSRVTGTGPMESLAKFPRR 360 (686)
Q Consensus 328 QIsEVMSqMKdLM~FSk~n~lSPiEALk~fv~~ 360 (686)
|+++|=.+|.++..+-...+..|-+||++.+..
T Consensus 618 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (653)
T 3osr_A 618 QMSAFWYAVRTAVINAASGRQTVDEDLKDAQTR 650 (653)
T ss_dssp THHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 579999999999999998888999999988765
No 5
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=14.16 E-value=80 Score=22.03 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHH
Q 005633 114 DNNIEFWRKFVAE 126 (686)
Q Consensus 114 ~ndIeYWqkFV~E 126 (686)
..-|.-|.+||+|
T Consensus 12 lemitawkkfvee 24 (28)
T 1nwd_B 12 LEMITAWKKFVEE 24 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3457889999987
No 6
>2wur_A Green fluorescent protein; chromophore, beta-barrel, luminescence, photoprotein, bioluminescence; HET: CSY IPA EOH; 0.90A {Aequorea victoria} PDB: 1emk_A* 1eme_A* 1emc_A* 1eml_A* 1s6z_A* 1z1p_A* 1z1q_A* 1q4a_A* 1c4f_A* 1emb_A* 1emg_A* 1ema_A* 1hcj_A* 1q4b_A* 1w7s_A* 1w7t_A* 1w7u_A* 2emd_A* 1emm_A* 2emn_A* ...
Probab=13.57 E-value=5e+02 Score=26.44 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=50.1
Q ss_pred CceeeEcccch--hHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEEEEeeEEEEE-eCCC---
Q 005633 166 GRGFEATVEVL--PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIV-FSPD--- 239 (686)
Q Consensus 166 ~KqFEItt~vL--PRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~Vv~~GqLRii-Fdpd--- 239 (686)
.|.|-=.-.=| |-||+..|..|-.-+ |....-+|-++ .++..|.|++-.++.+-++.+. |-+|
T Consensus 66 ~r~F~kYP~~i~~~DyFK~sfpeGyswe-------Rt~~fEDGGv~----t~~~~itleg~~~~~~~~f~GvnFP~dGPV 134 (236)
T 2wur_A 66 VQCFSRYPDHMKRHDFFKSAMPEGYVQE-------RTIFFKDDGNY----KTRAEVKFEGDTLVNRIELKGIDFKEDGNI 134 (236)
T ss_dssp CGGGSBCCGGGGGGCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTT
T ss_pred ccccccCCCCCCCCCHHHHhCCCCceEE-------EEEEECCCcEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCc
Confidence 57775555557 899998887675544 44455676644 3567778887667777777776 7554
Q ss_pred --cceeEEEEeecc
Q 005633 240 --LKICSWEFCARR 251 (686)
Q Consensus 240 --LKIE~wEF~~~s 251 (686)
-|+. ||.++..
T Consensus 135 Mqkkt~-weps~e~ 147 (236)
T 2wur_A 135 LGHKLE-YNYNSHN 147 (236)
T ss_dssp TTTCBC-SCCCCCE
T ss_pred ccccee-ecCCcce
Confidence 5678 8888744
No 7
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=13.30 E-value=1e+02 Score=21.47 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.0
Q ss_pred HHhHHHHHHHHHHHHH
Q 005633 12 QMNLLQQQRYLQLQQQ 27 (686)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (686)
-++-|+++|+.++|++
T Consensus 6 ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 6 ELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4777999999998764
No 8
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=11.50 E-value=5.9e+02 Score=26.47 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=56.5
Q ss_pred ccCccccccccccCCCCCceeeEcccch--hHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEE
Q 005633 149 GVFPQDVWHCEICNRKPGRGFEATVEVL--PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRV 226 (686)
Q Consensus 149 GvfpqdlW~cd~c~tk~~KqFEItt~vL--PRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~V 226 (686)
|.+|+ .|+-= +..-..|.|-=.-.=| |=||+..|..|-.-+ |...+-+|-++ .++..|.|++-.+
T Consensus 54 g~lpf-~~~il-~~~~~~~~f~~yp~~~~~~d~fk~~~p~gy~~~-------R~~~fedgg~~----~~~~~~~~~~~~~ 120 (307)
T 3ai5_A 54 GKLPV-PWPTL-VTTFXVQCFARYPDHMKQHDFFKSAMPEGYVQE-------RTIFFKDDGNY----KTRAEVKFEGDTL 120 (307)
T ss_dssp SSCSS-CGGGG-TTTC-CGGGCBCCGGGGGGCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEE
T ss_pred CCCCC-cHHHh-hhhhcchhhccCCCCCCcCChHHHhCCCCeeEE-------EEEEECCCcEE----EEEEEEEEECCEE
Confidence 66665 34332 1222367776555556 889999997776544 44455676643 3567778887667
Q ss_pred EEeeEEEEE-eCCC-----cceeEEEEeecce
Q 005633 227 VRDGQLRIV-FSPD-----LKICSWEFCARRH 252 (686)
Q Consensus 227 v~~GqLRii-Fdpd-----LKIE~wEF~~~sH 252 (686)
+.+-++.+. |-+| -|+. ||.++..-
T Consensus 121 ~~~~~~~g~~fp~~gpvm~~~~~-~~~~~~~~ 151 (307)
T 3ai5_A 121 VNRIELKGIDFKEDGNILGHKLE-YNYNSHNV 151 (307)
T ss_dssp EEEEEEEEECCCTTSTTTTTCBC-SCCCCEEE
T ss_pred EEEEEEEEECCCCCCCcccccee-ecCCcceE
Confidence 777777776 8654 5678 88887443
No 9
>1w8x_M Protein P30, protein P, GPP; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=10.83 E-value=1.6e+02 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.902 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 005633 449 NASSPYGGSSVQMPSPGSSNNIP 471 (686)
Q Consensus 449 ~~~spy~g~~~~~p~~~ss~~~~ 471 (686)
||--||.|+ |+||-|...-|||
T Consensus 4 npqfpyagp-vpipgpaptetmp 25 (83)
T 1w8x_M 4 NPQFPYAGP-VPIPGPAPTETMP 25 (83)
T ss_dssp CSSSCCCSS-CCTTCCCCCCCCC
T ss_pred CCCCCcCCC-CCCCCCCCccccc
Confidence 677899987 9999999988888
No 10
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=10.34 E-value=1.8e+02 Score=25.91 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=0.0
Q ss_pred EEEEEeCCCcceeEEEEe
Q 005633 231 QLRIVFSPDLKICSWEFC 248 (686)
Q Consensus 231 qLRiiFdpdLKIE~wEF~ 248 (686)
.|++.|.-.+.|+||+|.
T Consensus 110 ~l~l~f~G~~nl~~~~f~ 127 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFD 127 (133)
T ss_dssp EEEEEESSCCEEEEEEEE
T ss_pred EEEEEEECCcEEEEEEEE
Done!