Query 005633
Match_columns 686
No_of_seqs 136 out of 180
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 03:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dxoa1 d.17.4.19 (A:1-117) Un 45.3 42 0.003 26.6 8.3 66 172-245 46-111 (117)
2 d1uxxx_ b.18.1.10 (X:) Carbohy 18.9 36 0.0026 27.9 3.3 20 231-250 105-124 (125)
3 d1ggxa_ d.22.1.1 (A:) Red fluo 18.3 2E+02 0.015 26.6 8.8 83 165-261 62-150 (219)
4 d1od3a_ b.18.1.10 (A:) Putativ 16.1 46 0.0033 27.3 3.3 19 231-249 112-130 (132)
5 d1nn4a_ c.121.1.1 (A:) Alterna 15.9 13 0.00097 33.3 -0.3 21 618-638 80-103 (159)
6 d1m98a2 d.17.4.6 (A:176-317) O 13.7 48 0.0035 28.7 2.8 77 167-249 56-132 (142)
7 d1uy4a_ b.18.1.10 (A:) Putativ 12.8 63 0.0046 26.6 3.3 19 231-249 112-130 (132)
8 d2fh1a3 d.109.1.1 (A:629-741) 12.2 24 0.0018 29.0 0.3 44 177-222 12-56 (113)
9 d1moua_ d.22.1.1 (A:) Pocillop 11.8 5.2E+02 0.038 23.7 10.0 83 165-261 64-152 (221)
10 d1svya_ d.109.1.1 (A:) Severin 11.4 27 0.002 27.7 0.4 37 177-215 4-40 (102)
No 1
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.32 E-value=42 Score=26.57 Aligned_cols=66 Identities=5% Similarity=-0.094 Sum_probs=37.4
Q ss_pred cccchhHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEEEEeeEEEEEeCCCcceeEE
Q 005633 172 TVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSW 245 (686)
Q Consensus 172 tt~vLPRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~Vv~~GqLRiiFdpdLKIE~w 245 (686)
+...|-+|+...++.- ..+.+.+. ++-.-++..+.+ .|++..++-.++.+|.=.+.|+.+.||..+
T Consensus 46 G~~ai~~~~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~-----~w~~~~~~~~~~~~G~d~~~~~~dGkI~~~ 111 (117)
T d3dxoa1 46 GQQGIAAMIEAARQKF-PGYRFVLA--GTPDGHGNFTRF-----SWRLISPDGDDVAGGTDVVSLNTEGRIDNV 111 (117)
T ss_dssp HHHHHHHHHHHHHHHS-TTCEEEEE--EEEEEETTEEEE-----EEEEECTTSCEEEEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHHHHhC-CCcEEEEE--EEEecCCCEEEE-----EEEEecCCCCeEEEEEEEEEECCCCCEEEE
Confidence 7788888888777521 22222221 111111222222 233334444577899999999999999654
No 2
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=18.91 E-value=36 Score=27.92 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred EEEEEeCCCcceeEEEEeec
Q 005633 231 QLRIVFSPDLKICSWEFCAR 250 (686)
Q Consensus 231 qLRiiFdpdLKIE~wEF~~~ 250 (686)
+||+.|+-.+.|+||+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 48888988999999999754
No 3
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Probab=18.27 E-value=2e+02 Score=26.64 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCceeeEcccchhHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEEEEeeEEEEE-eCCC----
Q 005633 165 PGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIV-FSPD---- 239 (686)
Q Consensus 165 ~~KqFEItt~vLPRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~Vv~~GqLRii-Fdpd---- 239 (686)
+.|.|-=--.=||=||+..|..|-.-+ |....-+|-+. .++..|.|++..++.+-++.+. |-+|
T Consensus 62 G~r~F~kYP~~i~dyfk~sfp~Gys~e-------Rt~~fEDGGv~----t~~~~isleg~~~~~~~~~~G~nFP~dGPVM 130 (219)
T d1ggxa_ 62 GSKVYVKHPADIPDYKKLSFPEGFKWE-------RVMNFEDGGVV----TVTQDSSLQDGCFIYKVKFIGVNFPSDGPVM 130 (219)
T ss_dssp -CGGGCBCCTTSCCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTTT
T ss_pred ccEEeccCCCCcchHHHhhCCCCeeEE-------EEEEEcCCCEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCcc
Confidence 467887777778999999998887655 55556677743 3667788888778888888887 8664
Q ss_pred -cceeEEEEeecceeeccccchh
Q 005633 240 -LKICSWEFCARRHEELIPRRLL 261 (686)
Q Consensus 240 -LKIE~wEF~~~sHEEyIpRs~L 261 (686)
-||.-||-++. ..++|.-+
T Consensus 131 qkkt~~weps~e---~m~p~dg~ 150 (219)
T d1ggxa_ 131 QKKTMGWEASTE---RLYPRDGV 150 (219)
T ss_dssp TTCEEEECCEEE---EEEEETTE
T ss_pred ccccccCCCceE---EEEEeCCE
Confidence 78888987753 34556543
No 4
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=16.13 E-value=46 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEEEEeCCCcceeEEEEee
Q 005633 231 QLRIVFSPDLKICSWEFCA 249 (686)
Q Consensus 231 qLRiiFdpdLKIE~wEF~~ 249 (686)
.||+.|+-.+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nld~~~f~~ 130 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSK 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEC
T ss_pred EEEEEEeCCceEEEEEEEe
Confidence 6788898899999999974
No 5
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=15.89 E-value=13 Score=33.27 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=17.9
Q ss_pred CCCCCchhhhh---hhhhhccCCc
Q 005633 618 GGGLGQSAMVN---GIRAAMGNNS 638 (686)
Q Consensus 618 g~g~~~~~~~~---~~~~~~~~n~ 638 (686)
|-|+|.+.++| |||||+.+|.
T Consensus 80 GtG~G~~IaANK~~GIRAa~~~d~ 103 (159)
T d1nn4a_ 80 GTGVGISIAANKFAGIRAVVCSEP 103 (159)
T ss_dssp SSSHHHHHHHHTSTTCCEEECSSH
T ss_pred CCchHHHHHHHhccCceeeeecch
Confidence 66899999999 9999988754
No 6
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=13.69 E-value=48 Score=28.72 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=38.6
Q ss_pred ceeeEcccchhHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEEEEeeEEEEEeCCCcceeEEE
Q 005633 167 RGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 246 (686)
Q Consensus 167 KqFEItt~vLPRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~Vv~~GqLRiiFdpdLKIE~wE 246 (686)
+.+ .+...|-+||.... .|++.... ....| ...+|+..++..--+. .-+.|..+..+..=+-.|+.+-||-.++
T Consensus 56 ~p~-~G~eaI~~f~~~~~-~~~~~~p~--~g~~~-~~~~g~~~v~vtgkV~-~~~~G~~~~vn~a~~F~ln~~GkI~~v~ 129 (142)
T d1m98a2 56 KPI-VGKENTLRFFREEC-QNLKLIPE--RGVSE-PTEDGYTQIKVTGKVQ-TPWFGGNVGMNIAWRFLLNPENKVFFVA 129 (142)
T ss_dssp CCE-ESHHHHHHHHHHHC-TTCEEEEE--EEEEE-ECGGGCEEEEEEEEEE-CTTTGGGCCEEEEEEEEECTTSCEEEEE
T ss_pred ccc-cCHHHHHHHHHHhc-ccceeccc--ceeeE-eecCCcEEEEEEEEEe-cCCCCcceeeeeEEEEEECCCCcEEEEE
Confidence 344 48889999988553 35544311 11111 2344544443321011 1112333333333345678899999888
Q ss_pred Eee
Q 005633 247 FCA 249 (686)
Q Consensus 247 F~~ 249 (686)
+..
T Consensus 130 i~l 132 (142)
T d1m98a2 130 IDL 132 (142)
T ss_dssp EEE
T ss_pred eeh
Confidence 754
No 7
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=12.83 E-value=63 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.4
Q ss_pred EEEEEeCCCcceeEEEEee
Q 005633 231 QLRIVFSPDLKICSWEFCA 249 (686)
Q Consensus 231 qLRiiFdpdLKIE~wEF~~ 249 (686)
.||+.|+-.+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nid~~~F~~ 130 (132)
T d1uy4a_ 112 DIVLVFSGPVNVDNFIFSR 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEECCceEEEEEEEe
Confidence 6788898899999999974
No 8
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.16 E-value=24 Score=28.98 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=28.9
Q ss_pred hHHHHHHhhcCcceEEEee-cCCcceecCCCeEEEEeCceEEEEEec
Q 005633 177 PRLFKIKYESGTLEELLYV-DMPREYQNASGQIVLDYAKAIQESVFE 222 (686)
Q Consensus 177 PRfF~t~FeSGV~~iqLvL-d~pRE~vLsNGsI~LEc~KAs~iy~Ye 222 (686)
||+|+....+|...+..+. +..++...++...+|+|... +|++-
T Consensus 12 prLf~~~~~~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~--ifvW~ 56 (113)
T d2fh1a3 12 PRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ--VFVWV 56 (113)
T ss_dssp CEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSC--EEEEE
T ss_pred CEEEEEEcCCCCEEEEEEccCCCHHHCCCCceEEEECCCE--EEEEe
Confidence 7888776667876665542 33456667778888898865 44443
No 9
>d1moua_ d.22.1.1 (A:) Pocilloporin pigment Rtms5 {Coral (Montipora efflorescens) [TaxId: 105610]}
Probab=11.77 E-value=5.2e+02 Score=23.70 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred CCceeeEcccchhHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCceEEEEEecCeEEEEeeEEEEE-eCCC----
Q 005633 165 PGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIV-FSPD---- 239 (686)
Q Consensus 165 ~~KqFEItt~vLPRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KAs~iy~YegS~Vv~~GqLRii-Fdpd---- 239 (686)
+.|.|-=--.=||=||+..|..|-.-+ |....-+|-++ .++..|.|++-.++.+-++... |-+|
T Consensus 64 G~r~F~kYP~~i~Dyfk~sfp~Gyswe-------Rt~~fEDGGv~----t~~~~isleg~~~~~~~~~~G~nFP~dGPVM 132 (221)
T d1moua_ 64 GSIPFTKYPEDIPDYVKQSFPEGFTWE-------RIMNFEDGAVC----TVSNDSSIQGNCFTYHVKFSGLNFPPNGPVM 132 (221)
T ss_dssp -CTTSCBCCTTSCCHHHHHTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTTT
T ss_pred cceecccCCCCCccHHHhhCCCCceEE-------EEEEEcCCCEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCcc
Confidence 467887777778999999998887655 54556677643 3567788888778888888877 8554
Q ss_pred -cceeEEEEeecceeeccccchh
Q 005633 240 -LKICSWEFCARRHEELIPRRLL 261 (686)
Q Consensus 240 -LKIE~wEF~~~sHEEyIpRs~L 261 (686)
-||.-||=++ |..++|.-+
T Consensus 133 qkkt~~wePs~---E~~~p~dg~ 152 (221)
T d1moua_ 133 QKKTQGWEPHS---ERLFARGGM 152 (221)
T ss_dssp TTCEEEECCEE---EEEEEETTE
T ss_pred cccccccCCeE---EEEEeeCCE
Confidence 6788887543 445666643
No 10
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=11.41 E-value=27 Score=27.73 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=21.2
Q ss_pred hHHHHHHhhcCcceEEEeecCCcceecCCCeEEEEeCce
Q 005633 177 PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKA 215 (686)
Q Consensus 177 PRfF~t~FeSGV~~iqLvLd~pRE~vLsNGsI~LEc~KA 215 (686)
||+|+......++-.+ ++...+...++...+|++.+.
T Consensus 4 pRL~~v~G~~~~~~~e--v~~~~~~L~s~dvfILd~~~~ 40 (102)
T d1svya_ 4 PRLLHISGDKNAKVAE--VPLATSSLNSGDCFLLDAGLT 40 (102)
T ss_dssp CEEEEEECTTSCEEEE--ECSSGGGCBTTSEEEEECSSE
T ss_pred cEEEEEECCCceEEEE--ecCCHHHcCCCCeEEEEcCCE
Confidence 5566554333333332 245556667777888888763
Done!