BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005634
(686 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 248 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 294
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 295 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 351
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 247 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 293
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 294 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 350
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 248 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 294
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 295 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 248 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 294
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 295 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 250
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 251 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 297
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 298 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI 354
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 247 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 293
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 294 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 350
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
S L +L NL++L + DI +G L L+ LSL +++K + + LT L LDL+
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI---Q 308
+ + + +AP +S ++L EL +G + ++++ L GL+ LT LE+ Q
Sbjct: 252 NNQ-ISNLAP--LSGLTKLTELKLG----------ANQISNISPLAGLTALTNLELNENQ 298
Query: 309 VRDAQILP--QDLVFVELQRYRIC----IGEALGVQRVDSETSRLVELCGLANVSSL 359
+ D + ++L ++ L I + +QR+ +++ ++ LAN++++
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 355
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 10/90 (11%)
Query: 165 QISDLF-FEGTEELKVLSLNRIHFSSL---PSSLGRLINLQTLCLDGCGLKDIAIVGQLK 220
QISDL + +L+ LS+NR +L PS+ L L LD L+D + LK
Sbjct: 74 QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNELRDTDSLIHLK 128
Query: 221 KLEILSLRDSKIKQLPLEIGQLTRLQLLDL 250
LEILS+R++K+K + + +G L++L++LDL
Sbjct: 129 NLEILSIRNNKLKSIVM-LGFLSKLEVLDL 157
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDG 207
+LQ L GI + I++L + LK L + S+L ++ L L+ L L G
Sbjct: 184 NLQSLRLEWTGIRSLPASIANL-----QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 208 C-GLKDIA-IVGQLKKLEILSLRD-SKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVI 264
C L++ I G L+ L L+D S + LPL+I +LT+L+ LDL C +L + P++I
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLI 297
Query: 265 SKF 267
++
Sbjct: 298 AQL 300
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 172 EGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIA-IVGQLKKLEILSLRD- 229
+G L+ L L SLP+S+ L NL++L + L + + L KLE L LR
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 230 SKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKEL 273
+ ++ P G L+ L L DC +L+ + P I + ++L++L
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKL 282
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 176 ELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKDI--AIVGQLKKLEILSLRDSKI 232
+ K L L SSLPS + RL L+ L L+ L+ + I +LK LE L + D+K+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 233 KQLPLEI-GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMG 276
+ LP+ + QL L L L D L + P V ++L L +G
Sbjct: 98 QALPIGVFDQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLG 141
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLL--- 248
+ L L L++L L + DI ++ +L KL+ LSL D++I+++ + + +LT+LQ L
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLS 184
Query: 249 --DLSDCRSL 256
+SD R+L
Sbjct: 185 KNHISDLRAL 194
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 187 KNHISDLRALA 197
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 183
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 184 KNHISDLRALA 194
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 148 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 206
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 207 KNHISDLRALA 217
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLL--- 248
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 184
Query: 249 --DLSDCRSLV 257
+SD R+L
Sbjct: 185 KNHISDLRALA 195
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLL--- 248
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
Query: 249 --DLSDCRSLV 257
+SD R+L
Sbjct: 187 KNHISDLRALA 197
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251
+ L L + L L G LK+++ + L+ ++ L L ++I + + L+ LQ+L L
Sbjct: 79 APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYL- 136
Query: 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLE 306
D + I+P ++ + L+ L +G++ + + L L LSKLTTL+
Sbjct: 137 DLNQITNISP--LAGLTNLQYLSIGNA----------QVSDLTPLANLSKLTTLK 179
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 162 VSMQISDLF-FEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLK 220
S QI+D+ G L+VL L+ +++ S L L NLQ L + + D+ + L
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLS 173
Query: 221 KLEILSLRDSKIKQL 235
KL L D+KI +
Sbjct: 174 KLTTLKADDNKISDI 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 39 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 97
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 98 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 132
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLL--- 248
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLACLTKLQNLYLS 181
Query: 249 --DLSDCRSL 256
+SD R+L
Sbjct: 182 KNHISDLRAL 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD C L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 205 KNHISDLRALA 215
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 181
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 182 KNHISDLRALA 192
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 205 KNHISDLRALA 215
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 192 SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL- 250
+ L L L++L L + DI ++ +L KL+ LSL D++I + + + LT+LQ L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 204
Query: 251 ----SDCRSLV 257
SD R+L
Sbjct: 205 KNHISDLRALA 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 191 PSSLGRLINLQTLCLDGCGLKDI--AIVGQLKKLEILSLRDSKIKQLP----LEIGQLTR 244
P++ L +L TL LD CGL+++ + L L+ L L+D+ ++ LP ++G LT
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 245 LQL 247
L L
Sbjct: 157 LFL 159
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 14 DFLESEEAKSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLK 73
+ +E +E+ + GHA++V L RY + +E +++VH ++
Sbjct: 385 NIIEIDESAKYSWIKSPRWRGHAVEVGPLARY-----ILAYAQGVEYVKTQVHTSLNRFN 439
Query: 74 SSCLLLDDDAKD 85
+ C LLD + KD
Sbjct: 440 AVCRLLDPNHKD 451
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 163 SMQISDLF---FEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQL 219
+M + DL F+ +E+L L+L LG + + D G+++ A V QL
Sbjct: 141 AMGMGDLLSAMFDFSEKLNSLALTE-------EELGLFTAVVLVSADRSGMENSASVEQL 193
Query: 220 KKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSL 256
++ + +LR +K PLE + T+L LL L D R+L
Sbjct: 194 QETLLRALRALVLKNRPLETSRFTKL-LLKLPDLRTL 229
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 191 PSSLGRLINLQTLCLDGCGLKDI--AIVGQLKKLEILSLRDSKIKQLP----LEIGQLTR 244
P++ L L TL LD CGL+++ + L L+ L L+D+ ++ LP ++G LT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 245 L 245
L
Sbjct: 157 L 157
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 191 PSSLGRLINLQTLCLDGCGLKDI--AIVGQLKKLEILSLRDSKIKQLP----LEIGQLTR 244
P++ L L TL LD CGL+++ + L L+ L L+D+ ++ LP ++G LT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 245 L 245
L
Sbjct: 158 L 158
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 162 VSMQISDLF-FEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLK 220
S QI+D+ G L+VL L+ +++ S L L NLQ L + + D+ + L
Sbjct: 121 TSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDLTPLANLS 179
Query: 221 KLEILSLRDSKIKQL 235
KL L D+KI +
Sbjct: 180 KLTTLRADDNKISDI 194
>pdb|2R5K|A Chain A, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 11
pdb|2R5K|B Chain B, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 11
pdb|2R5K|C Chain C, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 11
pdb|2R5K|D Chain D, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 11
pdb|2R5K|E Chain E, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 11
Length = 424
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 285 VKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYR--ICIGEALGVQRVDS 342
VKGG N S + + +AQ+ + + Q + IC G L V VD+
Sbjct: 256 VKGGNNRSSVASSIYVHTPSGSLVSSEAQLFNKPYWLQKAQGHNNGICWGNHLSVTVVDT 315
Query: 343 ETSRLVELCGLANVSSLLENYGMKMLLKKTEDINL 377
S + LC + S+ N K ++ E+ +L
Sbjct: 316 TRSTNMTLCASVSKSATYTNSDYKEYMRHVEEFDL 350
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 49/119 (41%), Gaps = 23/119 (19%)
Query: 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDG 207
+L+ LI G+ VS + E LS NRI F L +L NL L L G
Sbjct: 50 NLEFLSLINVGLISVSNLPKLPKLKKLE----LSENRI-FGGLDMLAEKLPNLTHLNLSG 104
Query: 208 CGLKDIAIVGQLKKLEIL--------------SLRDSKIKQLPLEIGQLTRLQLLDLSD 252
LKDI+ + LKKLE L R+S K LP QLT L D D
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP----QLTYLDGYDRED 159
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 102 AEKRMFNIPNVADVKKKMEETIQKDPI-------AISLPRRDIQELPKRLQCPHLQLFL 153
EK P VA++ +E T+Q + I I LP DI+EL ++ + LQ FL
Sbjct: 5 GEKTTSTAPPVAELHLHIEGTLQPELIFALAERNGIELPYEDIEELREKYEFTDLQSFL 63
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 180 LSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI 239
LS N ++ SL ++L L L LD L + + G L L L L ++++ LPL
Sbjct: 38 LSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 240 GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275
L L +LD+S R L + + L+ELY+
Sbjct: 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 197 LINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSL 256
L NL+ L L+G + DI+ + L KL L + +KI + L +L++ R L
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS---------ALQNLTNLREL 115
Query: 257 VVIAPNV--ISKFSRLKELYMGDSFSQWDKVKGGRNASLAELK------GLSKLTTLEIQ 308
+ N+ IS + L + Y + G N +L++L GL+ LT E +
Sbjct: 116 YLNEDNISDISPLANLTKXY---------SLNLGANHNLSDLSPLSNXTGLNYLTVTESK 166
Query: 309 VRD 311
V+D
Sbjct: 167 VKD 169
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 166 ISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEIL 225
IS F G L+ L+L + + +S+P+ L +L L IV +L+ L I
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGL-----------IVLRLRHLNIN 189
Query: 226 SLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVI 264
++RD K +L RL++L++S L + PN +
Sbjct: 190 AIRDYSFK-------RLYRLKVLEISHWPYLDTMTPNCL 221
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 197 LINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRS 255
L+NL+ L L C LKDI + L +LE L L +++ + P LT L+ L L +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ- 213
Query: 256 LVVIAPNVISKFSRLKELYM 275
+ I N L+EL +
Sbjct: 214 VATIERNAFDDLKSLEELNL 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,416,821
Number of Sequences: 62578
Number of extensions: 720207
Number of successful extensions: 1584
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 92
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)