Query 005634
Match_columns 686
No_of_seqs 471 out of 3740
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 11:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-47 7.3E-52 421.0 19.1 458 1-582 393-863 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-39 6.2E-44 378.5 30.6 474 2-583 419-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.4E-31 3E-36 314.6 26.4 470 124-655 92-592 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.7E-31 3.7E-36 313.8 25.5 462 123-647 116-607 (968)
5 PLN03210 Resistant to P. syrin 99.9 8.9E-23 1.9E-27 239.9 27.6 370 123-555 556-945 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 2.5E-25 5.3E-30 223.5 -5.1 365 124-648 6-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 5.3E-23 1.1E-27 205.6 6.4 153 148-313 79-234 (873)
8 KOG0444 Cytoskeletal regulator 99.9 4E-24 8.6E-29 214.9 -5.0 184 124-318 54-240 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 1.5E-24 3.4E-29 207.2 -13.9 258 126-408 46-308 (565)
10 KOG4194 Membrane glycoprotein 99.8 3.9E-21 8.4E-26 192.3 3.7 338 124-491 77-427 (873)
11 KOG0618 Serine/threonine phosp 99.8 6.6E-22 1.4E-26 208.4 -4.9 405 130-582 3-422 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1.9E-23 4.2E-28 199.7 -14.9 409 127-577 93-539 (565)
13 KOG0618 Serine/threonine phosp 99.8 2.3E-21 5E-26 204.3 -5.5 417 126-615 46-488 (1081)
14 KOG0617 Ras suppressor protein 99.7 4.8E-19 1E-23 150.1 -4.8 166 138-319 24-192 (264)
15 KOG0617 Ras suppressor protein 99.6 2.9E-18 6.3E-23 145.4 -4.6 151 124-281 32-186 (264)
16 KOG4658 Apoptotic ATPase [Sign 99.5 2E-14 4.4E-19 160.8 5.9 127 172-309 520-651 (889)
17 PRK15387 E3 ubiquitin-protein 99.5 6.6E-13 1.4E-17 145.5 16.6 157 126-317 202-359 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.4E-17 142.6 16.4 180 114-332 212-392 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 7.9E-13 1.7E-17 145.9 14.1 248 124-408 177-426 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 6E-13 1.3E-17 146.8 12.3 245 148-435 179-424 (754)
21 KOG4341 F-box protein containi 99.3 1.4E-13 3E-18 133.8 -3.4 81 199-279 139-227 (483)
22 KOG4341 F-box protein containi 99.2 1.6E-13 3.5E-18 133.4 -6.6 290 341-662 162-458 (483)
23 KOG0532 Leucine-rich repeat (L 99.2 1.7E-12 3.7E-17 130.9 -1.4 178 124-319 74-253 (722)
24 KOG4237 Extracellular matrix p 99.1 5.7E-12 1.2E-16 121.7 -1.0 137 112-253 55-198 (498)
25 PF14580 LRR_9: Leucine-rich r 99.1 6.2E-11 1.3E-15 106.4 5.2 128 173-307 17-147 (175)
26 cd00116 LRR_RI Leucine-rich re 99.1 3.8E-11 8.2E-16 123.0 3.7 12 453-464 277-288 (319)
27 KOG4237 Extracellular matrix p 99.1 2E-11 4.3E-16 118.0 0.7 141 133-279 54-199 (498)
28 KOG1259 Nischarin, modulator o 99.1 2.3E-11 5.1E-16 113.1 0.4 184 124-317 213-416 (490)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 104.9 4.5 136 183-328 5-146 (175)
30 KOG0532 Leucine-rich repeat (L 99.1 7.7E-12 1.7E-16 126.3 -3.8 187 129-333 54-245 (722)
31 cd00116 LRR_RI Leucine-rich re 99.0 6.7E-10 1.5E-14 113.8 6.0 80 175-254 137-232 (319)
32 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.3E-14 114.4 6.2 187 130-332 98-287 (394)
33 KOG1259 Nischarin, modulator o 98.9 2.4E-10 5.3E-15 106.5 -1.1 128 146-281 283-412 (490)
34 COG4886 Leucine-rich repeat (L 98.9 2.2E-09 4.7E-14 113.3 5.8 172 125-313 116-290 (394)
35 KOG3207 Beta-tubulin folding c 98.6 7.9E-09 1.7E-13 101.8 1.2 190 123-317 119-318 (505)
36 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.7E-14 100.9 -3.7 188 221-466 186-375 (419)
37 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 100.6 0.2 179 122-311 143-337 (505)
38 PLN03150 hypothetical protein; 98.5 2.3E-07 5.1E-12 102.5 9.4 104 176-280 419-527 (623)
39 PLN03150 hypothetical protein; 98.5 2.8E-07 6E-12 101.9 9.5 104 199-311 419-526 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.4E-12 68.5 3.7 54 177-230 3-59 (61)
41 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 69.0 3.3 57 221-278 2-59 (61)
42 KOG1859 Leucine-rich repeat pr 98.4 3.4E-09 7.4E-14 110.4 -9.6 131 174-314 163-293 (1096)
43 PRK15386 type III secretion pr 98.3 1.3E-06 2.9E-11 88.3 8.2 120 424-579 50-169 (426)
44 KOG0531 Protein phosphatase 1, 98.3 7.8E-08 1.7E-12 101.5 -2.4 170 127-315 74-247 (414)
45 KOG2120 SCF ubiquitin ligase, 98.2 7.5E-08 1.6E-12 90.2 -2.8 43 451-494 310-352 (419)
46 KOG1947 Leucine rich repeat pr 98.2 1E-07 2.2E-12 103.8 -2.6 252 367-652 185-445 (482)
47 PRK15386 type III secretion pr 98.2 3.5E-06 7.5E-11 85.3 8.2 150 452-659 50-203 (426)
48 KOG3665 ZYG-1-like serine/thre 98.2 5.5E-07 1.2E-11 99.1 2.3 105 124-232 121-232 (699)
49 KOG1909 Ran GTPase-activating 98.2 5.6E-07 1.2E-11 86.6 1.8 185 124-313 91-311 (382)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 6.8E-11 56.7 4.2 39 221-260 2-40 (44)
51 PF12799 LRR_4: Leucine Rich r 98.1 4.2E-06 9.2E-11 56.1 4.3 37 176-212 2-38 (44)
52 KOG0531 Protein phosphatase 1, 98.1 4.7E-07 1E-11 95.7 -1.0 171 122-313 92-268 (414)
53 KOG2982 Uncharacterized conser 98.1 5.4E-07 1.2E-11 84.6 -1.1 82 219-311 70-157 (418)
54 KOG3665 ZYG-1-like serine/thre 98.0 5.5E-06 1.2E-10 91.4 4.7 134 174-311 121-261 (699)
55 KOG1909 Ran GTPase-activating 97.9 6.5E-06 1.4E-10 79.4 2.9 163 145-313 90-283 (382)
56 KOG1947 Leucine rich repeat pr 97.9 1.2E-06 2.6E-11 95.4 -2.7 227 394-651 185-418 (482)
57 KOG1859 Leucine-rich repeat pr 97.9 3.6E-07 7.8E-12 95.7 -6.4 105 171-281 183-292 (1096)
58 KOG4579 Leucine-rich repeat (L 97.8 2.5E-06 5.4E-11 70.8 -0.8 90 172-262 50-141 (177)
59 KOG2982 Uncharacterized conser 97.8 6.9E-06 1.5E-10 77.3 1.5 84 171-254 67-157 (418)
60 KOG4579 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 71.3 -2.0 108 127-238 29-141 (177)
61 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.6E-09 64.5 5.8 81 172-252 61-149 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 63.5 5.3 101 200-308 44-148 (233)
63 KOG2123 Uncharacterized conser 97.1 2.2E-05 4.8E-10 73.3 -4.4 80 174-254 18-99 (388)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.9E-09 66.1 2.2 81 197-279 42-127 (260)
65 KOG2123 Uncharacterized conser 96.9 7.5E-05 1.6E-09 69.9 -3.1 105 197-306 18-123 (388)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.0025 5.4E-08 59.8 4.1 40 194-233 88-133 (388)
67 PF00560 LRR_1: Leucine Rich R 96.0 0.002 4.3E-08 35.8 0.3 19 222-240 2-20 (22)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0052 1.1E-07 57.7 2.4 89 217-314 40-130 (260)
69 KOG3864 Uncharacterized conser 95.7 0.0022 4.8E-08 57.6 -0.5 71 507-580 120-190 (221)
70 COG5238 RNA1 Ran GTPase-activa 95.6 0.018 4E-07 54.2 4.9 136 173-313 28-198 (388)
71 PF13306 LRR_5: Leucine rich r 95.6 0.039 8.4E-07 47.5 6.8 115 145-270 10-128 (129)
72 KOG3864 Uncharacterized conser 95.5 0.0028 6E-08 57.0 -0.7 70 422-494 121-190 (221)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0074 1.6E-07 33.5 1.1 21 176-196 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 94.5 0.025 5.5E-07 29.0 1.5 16 221-236 2-17 (17)
75 PF13306 LRR_5: Leucine rich r 94.4 0.13 2.9E-06 44.1 6.9 106 166-277 3-112 (129)
76 PF13504 LRR_7: Leucine rich r 92.8 0.079 1.7E-06 27.1 1.5 16 176-191 2-17 (17)
77 smart00369 LRR_TYP Leucine-ric 91.2 0.21 4.5E-06 28.9 2.3 19 220-238 2-20 (26)
78 smart00370 LRR Leucine-rich re 91.2 0.21 4.5E-06 28.9 2.3 19 220-238 2-20 (26)
79 KOG0473 Leucine-rich repeat pr 91.0 0.0068 1.5E-07 55.6 -6.2 56 175-230 65-121 (326)
80 KOG0473 Leucine-rich repeat pr 90.7 0.0077 1.7E-07 55.3 -6.2 83 172-254 39-122 (326)
81 smart00367 LRR_CC Leucine-rich 89.2 0.21 4.6E-06 28.9 1.1 17 633-649 1-17 (26)
82 smart00370 LRR Leucine-rich re 86.9 0.6 1.3E-05 26.9 2.1 21 242-263 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 86.9 0.6 1.3E-05 26.9 2.1 21 242-263 1-21 (26)
84 smart00367 LRR_CC Leucine-rich 84.9 0.45 9.8E-06 27.5 0.9 18 539-556 1-18 (26)
85 KOG4308 LRR-containing protein 80.0 0.03 6.4E-07 59.6 -9.5 181 127-313 89-303 (478)
86 smart00364 LRR_BAC Leucine-ric 76.1 1.7 3.8E-05 25.0 1.2 17 221-237 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 71.2 3.5 7.6E-05 23.9 1.7 15 220-234 2-16 (26)
88 PF13516 LRR_6: Leucine Rich r 61.9 3 6.6E-05 23.3 0.3 12 221-232 3-14 (24)
89 KOG4308 LRR-containing protein 52.9 0.52 1.1E-05 50.3 -7.0 156 124-281 114-303 (478)
90 smart00368 LRR_RI Leucine rich 49.0 15 0.00032 21.6 1.8 14 220-233 2-15 (28)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-47 Score=420.98 Aligned_cols=458 Identities=24% Similarity=0.338 Sum_probs=300.7
Q ss_pred CccccchhhhcccccCCCchhHHHHhhhcccCCCCccCHHHHHHHhhhcccccccCCHHHHHHHHHHHHHHHHHcccccc
Q 005634 1 MQANVYTSIKLSYDFLESEEAKSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLD 80 (686)
Q Consensus 1 ~~~~i~~~L~lSY~~Lp~~~lk~cfly~s~fp~~~~i~~~~Li~~Wiaegfi~~~~~~e~~~~~~~~~~~~L~~~~l~~~ 80 (686)
|++.|+++|++|||+||.+ +|.||+|||+|||||+|++++||++|||||||.+....+.|++.|++|+.+|+++++++.
T Consensus 393 ~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred hhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 5678999999999999977 999999999999999999999999999999998855667799999999999999999997
Q ss_pred cC---CCCcEEechhHHHHHHHHHh-----ccCeeeecCCCchhhhhcccCCCCCEEEEccCCCCCCCCCcCCCCCcceE
Q 005634 81 DD---AKDEVKMCDVIHVVAVSIAA-----EKRMFNIPNVADVKKKMEETIQKDPIAISLPRRDIQELPKRLQCPHLQLF 152 (686)
Q Consensus 81 ~~---~~~~~~mhdl~~dla~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L 152 (686)
.+ ...+|+|||+|||||.++|. +++ ..+.++......|....+..+|++++.++.+..++....+++|++|
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 65 34679999999999999999 455 3344333333355556678899999999999999888888899999
Q ss_pred EcccCCCcccccccchhHhcCCCCccEEEecCcc-CCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCC
Q 005634 153 LLITKGIAPVSMQISDLFFEGTEELKVLSLNRIH-FSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSK 231 (686)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~ 231 (686)
.+.+|.. ....++..+|..++.||+||+++|. +.++|+++ +.|.+||||+++++.
T Consensus 551 ll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----------------------~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 551 LLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----------------------GELVHLRYLDLSDTG 606 (889)
T ss_pred EEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHH----------------------hhhhhhhcccccCCC
Confidence 9999861 1456777777778888888777653 34555555 445555555566666
Q ss_pred CCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecC
Q 005634 232 IKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRD 311 (686)
Q Consensus 232 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 311 (686)
|+.+|.++++|.+|++|++..+..+..+|. ++..|++||+|.+...... .......++.++.+|+.+.+....
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~------~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS------NDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc------cchhhHHhhhcccchhhheeecch
Confidence 667777777777777777776665555543 2555777777777655422 334456666666677666664332
Q ss_pred CCcCCCcc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccC
Q 005634 312 AQILPQDL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHEL 390 (686)
Q Consensus 312 ~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 390 (686)
. .+-... .+..|. ...+.+.+.++...+ ..
T Consensus 680 ~-~~~e~l~~~~~L~--------------------------------------------~~~~~l~~~~~~~~~----~~ 710 (889)
T KOG4658|consen 680 V-LLLEDLLGMTRLR--------------------------------------------SLLQSLSIEGCSKRT----LI 710 (889)
T ss_pred h-HhHhhhhhhHHHH--------------------------------------------HHhHhhhhcccccce----ee
Confidence 2 100000 111111 111111111111111 11
Q ss_pred CCCCCCCCCceEEeecCCCceEeeccccccccc-cCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCcc
Q 005634 391 DDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRK-VFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQ 469 (686)
Q Consensus 391 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 469 (686)
..+..+.+|+.|.|.+|...+............ .|+++.++.+.+|..+++..... ..|+|+.|.+..|+.+.+
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~-----f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL-----FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh-----ccCcccEEEEeccccccc
Confidence 125678889999999887654322111111112 26677777777776666544322 347777777777777776
Q ss_pred ccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCccee-ecccccccccccccCCCccccCCCCeEEEEe
Q 005634 470 LFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEEL-NLRELRNIKKIWPDHNQGMYCCQNLTTVIVD 548 (686)
Q Consensus 470 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 548 (686)
..+ ....+..++++. ..|.+++.+ .+.+.+.++.+..... .++.|+.+.+.
T Consensus 786 ~i~--~~k~~~~l~~~i----------------------~~f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve 837 (889)
T KOG4658|consen 786 IIP--KLKALLELKELI----------------------LPFNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVE 837 (889)
T ss_pred CCC--HHHHhhhcccEE----------------------ecccccccceeeecCCCCceeEeccc----Cccchhheehh
Confidence 544 334444444421 234444444 3555555555433333 25568888888
Q ss_pred cCCCcccccchhHHHhhccCcEEEEeec-cCcceE
Q 005634 549 GCDHMKYLFSYSMVNSLLQLQYLEISYC-SSMEGI 582 (686)
Q Consensus 549 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C-~~l~~l 582 (686)
.|+++..+ |.+.++.|.+| +.+..+
T Consensus 838 ~~p~l~~~---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 838 ECPKLGKL---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred cCcccccC---------ccccccceeccccceeec
Confidence 88877665 67778888887 544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-39 Score=378.47 Aligned_cols=474 Identities=20% Similarity=0.265 Sum_probs=298.0
Q ss_pred ccccchhhhcccccCCCchhHHHHhhhcccCCCCccCHHHHHHHhhhcccccccCCHHHHHHHHHHHHHHHHHccccccc
Q 005634 2 QANVYTSIKLSYDFLESEEAKSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDD 81 (686)
Q Consensus 2 ~~~i~~~L~lSY~~Lp~~~lk~cfly~s~fp~~~~i~~~~Li~~Wiaegfi~~~~~~e~~~~~~~~~~~~L~~~~l~~~~ 81 (686)
+++|+++|++||++||.++.|.||+|||+||+++.+ +.|..|+|.+.+... ..++.|+++||++..
T Consensus 419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDKSLIHVR 484 (1153)
T ss_pred cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhcCCEEEc
Confidence 457999999999999874499999999999988654 457788888765421 127889999999865
Q ss_pred CCCCcEEechhHHHHHHHHHhccC------eeeecCCCchhhhhcccCCCCCEEEEccCCCCCCC--CCc--CCCCCcce
Q 005634 82 DAKDEVKMCDVIHVVAVSIAAEKR------MFNIPNVADVKKKMEETIQKDPIAISLPRRDIQEL--PKR--LQCPHLQL 151 (686)
Q Consensus 82 ~~~~~~~mhdl~~dla~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l--~~~--~~~~~L~~ 151 (686)
+ ++++|||++||||+++++++. .+.+................+++.+++....+..+ ... .++++|+.
T Consensus 485 ~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~ 562 (1153)
T PLN03210 485 E--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF 562 (1153)
T ss_pred C--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence 3 469999999999999997742 11111111111111123345667777665554322 111 15667777
Q ss_pred EEcccCCCc---ccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEc
Q 005634 152 FLLITKGIA---PVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSL 227 (686)
Q Consensus 152 L~l~~~~~~---~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l 227 (686)
|.+..+... .....+|.++..-..+||.|++.++.+..+|..+ ...+|+.|++.++.+.. +..+..+++|++|++
T Consensus 563 L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 563 LKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641 (1153)
T ss_pred EEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEEC
Confidence 766544210 0122345544222345677777776666666655 45667777777766666 566666677777777
Q ss_pred cCC-CCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEE
Q 005634 228 RDS-KIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLE 306 (686)
Q Consensus 228 ~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 306 (686)
+++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|... ...+..+ ++++|+.|+
T Consensus 642 s~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L--------~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 642 RGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL--------EILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc--------CccCCcC-CCCCCCEEe
Confidence 665 4556653 666667777777766666666665 666777777776665422 1111111 455566666
Q ss_pred EeecC-CCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCccc
Q 005634 307 IQVRD-AQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQN 385 (686)
Q Consensus 307 l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 385 (686)
+++|. ...+|. . ..+|+.|.+.+.. ++
T Consensus 711 Lsgc~~L~~~p~-----------------------~---------------------------~~nL~~L~L~~n~-i~- 738 (1153)
T PLN03210 711 LSGCSRLKSFPD-----------------------I---------------------------STNISWLDLDETA-IE- 738 (1153)
T ss_pred CCCCCCcccccc-----------------------c---------------------------cCCcCeeecCCCc-cc-
Confidence 55443 111111 0 1233333333221 11
Q ss_pred ccccCCCCCCCCCCceEEeecCCCceEeeccccc--cccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEec
Q 005634 386 VVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGR--VRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRN 463 (686)
Q Consensus 386 ~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 463 (686)
.++....+++|++|.+.++...+.+...... .....+++|+.|.+++++.+..++.. .+.+++|+.|++++
T Consensus 739 ---~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 739 ---EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN 811 (1153)
T ss_pred ---cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC
Confidence 1111123556666666554321111000000 01224578999999988877777654 56789999999999
Q ss_pred CCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCe
Q 005634 464 SQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLT 543 (686)
Q Consensus 464 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 543 (686)
|.+++.+|.. .++++|+.|++++|..+..++ ...++|+.|++.++ .++.++.. ...+++|+
T Consensus 812 C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p-----------~~~~nL~~L~Ls~n-~i~~iP~s----i~~l~~L~ 872 (1153)
T PLN03210 812 CINLETLPTG---INLESLESLDLSGCSRLRTFP-----------DISTNISDLNLSRT-GIEEVPWW----IEKFSNLS 872 (1153)
T ss_pred CCCcCeeCCC---CCccccCEEECCCCCcccccc-----------ccccccCEeECCCC-CCccChHH----HhcCCCCC
Confidence 9999988762 268899999999999888766 13468999999887 66665433 34688999
Q ss_pred EEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEe
Q 005634 544 TVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIV 583 (686)
Q Consensus 544 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~ 583 (686)
.|++++|++++.++. ....+++|+.+++++|++|+.+.
T Consensus 873 ~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 873 FLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 999999999999854 35678999999999999987653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-31 Score=314.55 Aligned_cols=470 Identities=17% Similarity=0.124 Sum_probs=249.5
Q ss_pred CCCCEEEEccCCCC-CCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-CCchhhhcCCC
Q 005634 124 QKDPIAISLPRRDI-QELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-SLPSSLGRLIN 199 (686)
Q Consensus 124 ~~~l~~l~l~~~~~-~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~ 199 (686)
.++++.|++++|.+ ..+|... .+++|++|++++|. ..+.+|. ..+.+|++|++++|.+. .+|..++++++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~---l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN---FTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc---cccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 55677777777766 3555443 56777777777766 3444444 34666777777777665 56667777777
Q ss_pred CcEEEccCCCCCC--cccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEec
Q 005634 200 LQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMG 276 (686)
Q Consensus 200 Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 276 (686)
|++|++++|.+.. |..++++++|++|++++|.++ .+|..++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence 7777777777543 566777777777777777665 56777777777777777777644456655 6777777777777
Q ss_pred CCccccccccCCCccchhhhCCCCCccEEEEeecCCC-cCCCcc-cccCccEEEEEecCcCCc---cccCCCCccEEEEc
Q 005634 277 DSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VFVELQRYRICIGEALGV---QRVDSETSRLVELC 351 (686)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~---~~~~~~~l~~l~l~ 351 (686)
+|.+. ...+..++++++|+.|+++.|... .+|..+ .+.+|+.|++..+..... ......+++.+.+.
T Consensus 245 ~n~l~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 245 YNNLT--------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred Cceec--------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 76543 223455667777777777766643 344444 666777776654432111 12334566666665
Q ss_pred CccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEe
Q 005634 352 GLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESL 431 (686)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 431 (686)
+..-.. ........+++|+.|.+.++.-....... ++.+++|+.|+++++.-...++. ....+++|+.|
T Consensus 317 ~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L 385 (968)
T PLN00113 317 SNNFTG---KIPVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKL 385 (968)
T ss_pred CCccCC---cCChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEE
Confidence 432111 11122234566777777665433222221 34566777777766542211111 12234455555
Q ss_pred eccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecccccccccccccc
Q 005634 432 SLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSL 511 (686)
Q Consensus 432 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 511 (686)
.+.++.-...++.. .+.+++|+.|++.+|.--..+|. .+..+++|+.|+++++.-...++ .....+
T Consensus 386 ~l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l 451 (968)
T PLN00113 386 ILFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRIN--------SRKWDM 451 (968)
T ss_pred ECcCCEecccCCHH----HhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccC--------hhhccC
Confidence 55543311111111 23455566666555442222222 34455555555555443222211 112234
Q ss_pred CCcceeecccccccccccccC-------------------CCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEE
Q 005634 512 PSLEELNLRELRNIKKIWPDH-------------------NQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLE 572 (686)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~-------------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 572 (686)
++|+.|++++|.-...++... +.....+++|+.|++++|.-...+ | ..+..+++|++|+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p-~~~~~l~~L~~L~ 529 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI-P-DELSSCKKLVSLD 529 (968)
T ss_pred CCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC-C-hHHcCccCCCEEE
Confidence 455555555442211111100 000123444555555554222222 1 2334455555555
Q ss_pred EeeccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCCceeecc
Q 005634 573 ISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNMLRFIS 652 (686)
Q Consensus 573 i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~ 652 (686)
|++|.-...+ +. ....+++|+.|++.++.-...++..- ..+++|+.|++++|+-...+|.
T Consensus 530 Ls~N~l~~~~--p~-----------~~~~l~~L~~L~Ls~N~l~~~~p~~l-------~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 530 LSHNQLSGQI--PA-----------SFSEMPVLSQLDLSQNQLSGEIPKNL-------GNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCCcccccC--Ch-----------hHhCcccCCEEECCCCcccccCChhH-------hcCcccCEEeccCCcceeeCCC
Confidence 5554321111 11 11225677777777665444444322 5788999999999987777776
Q ss_pred ccC
Q 005634 653 TSS 655 (686)
Q Consensus 653 ~~~ 655 (686)
.+.
T Consensus 590 ~~~ 592 (968)
T PLN00113 590 TGA 592 (968)
T ss_pred cch
Confidence 533
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.7e-31 Score=313.79 Aligned_cols=462 Identities=17% Similarity=0.173 Sum_probs=299.6
Q ss_pred CCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-CCchhhhcCCCCc
Q 005634 123 IQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-SLPSSLGRLINLQ 201 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~Lr 201 (686)
...++++|++++|.+....+...+++|++|++++|. ....+|..+ +++++|++|++++|.+. .+|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~---~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM---LSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCc---ccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 467899999999988433333468899999999998 455677665 88999999999999876 6888899999999
Q ss_pred EEEccCCCCCC--cccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCC
Q 005634 202 TLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDS 278 (686)
Q Consensus 202 ~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 278 (686)
+|++++|.+.. |..++++++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCC
Confidence 99999999765 788999999999999999887 78889999999999999998855567776 899999999999988
Q ss_pred ccccccccCCCccchhhhCCCCCccEEEEeecCCC-cCCCcc-cccCccEEEEEecCcCCcc---ccCCCCccEEEEcCc
Q 005634 279 FSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VFVELQRYRICIGEALGVQ---RVDSETSRLVELCGL 353 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~---~~~~~~l~~l~l~~~ 353 (686)
.+. ...+..+.++++|+.|++++|... .+|..+ .+.+|+.|++..+...... ....++++.+.+.++
T Consensus 271 ~l~--------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 271 KLS--------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred eee--------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 764 234456777788888888877754 455544 6777888877655422111 234566777777654
Q ss_pred cCccchhhhhhHhhhhccccEEEEccccCcccccccCC---------------------CCCCCCCCceEEeecCCCceE
Q 005634 354 ANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELD---------------------DGEGFPRLKHLQVKLCSEILH 412 (686)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---------------------~l~~l~~L~~L~l~~~~~l~~ 412 (686)
.-... .......+++|+.|++.++.-.......+. .++.+++|+.|++.++.-...
T Consensus 343 ~l~~~---~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 343 KFSGE---IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCcCc---CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 21111 111223356666676665432221111110 022344555555544432111
Q ss_pred eeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeeccc
Q 005634 413 IVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYK 492 (686)
Q Consensus 413 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 492 (686)
++ .....+++|+.|+++++. +....... ...+++|+.|++++|.-...+|. ....++|+.|++++|..
T Consensus 420 ~p-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~n~~~~~~p~---~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 420 LP-----SEFTKLPLVYFLDISNNN-LQGRINSR---KWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDLSRNQF 487 (968)
T ss_pred CC-----hhHhcCCCCCEEECcCCc-ccCccChh---hccCCCCcEEECcCceeeeecCc---ccccccceEEECcCCcc
Confidence 10 022345555566665533 22111110 23466677777766654444433 22346677777766654
Q ss_pred ceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEE
Q 005634 493 LEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLE 572 (686)
Q Consensus 493 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 572 (686)
-..++ .....+++|+.|+++++ .+....... ...+++|+.|+|++|. ++... +..+..+++|+.|+
T Consensus 488 ~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~p~~---~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~ 553 (968)
T PLN00113 488 SGAVP--------RKLGSLSELMQLKLSEN-KLSGEIPDE---LSSCKKLVSLDLSHNQ-LSGQI-PASFSEMPVLSQLD 553 (968)
T ss_pred CCccC--------hhhhhhhccCEEECcCC-cceeeCChH---HcCccCCCEEECCCCc-ccccC-ChhHhCcccCCEEE
Confidence 33333 24557889999999998 444322221 3468999999999995 44432 34678899999999
Q ss_pred EeeccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCCc
Q 005634 573 ISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNM 647 (686)
Q Consensus 573 i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L 647 (686)
+++|.-...+ +... ..+++|+.|++.+++-...+|... .+.++....+.+-+.+
T Consensus 554 Ls~N~l~~~~--p~~l-----------~~l~~L~~l~ls~N~l~~~~p~~~--------~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 554 LSQNQLSGEI--PKNL-----------GNVESLVQVNISHNHLHGSLPSTG--------AFLAINASAVAGNIDL 607 (968)
T ss_pred CCCCcccccC--ChhH-----------hcCcccCEEeccCCcceeeCCCcc--------hhcccChhhhcCCccc
Confidence 9998743333 2221 226789999998887665666544 4445555555665555
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.9e-23 Score=239.87 Aligned_cols=370 Identities=18% Similarity=0.240 Sum_probs=261.4
Q ss_pred CCCCCEEEEccCCCC-------CCCCCcC-CC-CCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh
Q 005634 123 IQKDPIAISLPRRDI-------QELPKRL-QC-PHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS 193 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 193 (686)
...+++.|.+..+.. ..+|..+ .+ .+||.|.+.++. ...+|..+ ...+|+.|++.++.+..+|.+
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~----l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP----LRCMPSNF--RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC----CCCCCCcC--CccCCcEEECcCccccccccc
Confidence 367788888866532 2344444 33 479999999987 56788765 678999999999999999999
Q ss_pred hhcCCCCcEEEccCCC-CCCcccccCCCCCCEEEccCC-CCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCc
Q 005634 194 LGRLINLQTLCLDGCG-LKDIAIVGQLKKLEILSLRDS-KIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLK 271 (686)
Q Consensus 194 l~~l~~Lr~L~L~~~~-l~~~~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 271 (686)
+..+++|++|+++++. ++.++.++.+++|++|++++| .+..+|.+++++++|++|++++|..++.+|.. + ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCC
Confidence 9999999999999987 666667899999999999998 68899999999999999999999999999986 3 899999
Q ss_pred EEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEc
Q 005634 272 ELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELC 351 (686)
Q Consensus 272 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~ 351 (686)
+|++++|... ...+ . ...+|+.|+++.+.+..+|..+.+.+|+.|.+....... +.
T Consensus 708 ~L~Lsgc~~L--------~~~p-~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~-------------l~ 763 (1153)
T PLN03210 708 RLNLSGCSRL--------KSFP-D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-------------LW 763 (1153)
T ss_pred EEeCCCCCCc--------cccc-c--ccCCcCeeecCCCccccccccccccccccccccccchhh-------------cc
Confidence 9999998643 1111 1 245789999999998888887777777777654221100 00
Q ss_pred CccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEe
Q 005634 352 GLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESL 431 (686)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 431 (686)
+- ...+ ........++|+.|.+.++.....+... ++++++|+.|++.+|..++.++. ...+++|+.|
T Consensus 764 ~~--~~~l--~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~~LP~------~~~L~sL~~L 830 (1153)
T PLN03210 764 ER--VQPL--TPLMTMLSPSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPT------GINLESLESL 830 (1153)
T ss_pred cc--cccc--chhhhhccccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcCeeCC------CCCccccCEE
Confidence 00 0000 0011123467778888777665554333 45778888888888877766542 2257788888
Q ss_pred eccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecccccccccccccc
Q 005634 432 SLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSL 511 (686)
Q Consensus 432 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 511 (686)
++++|..+..++. ..++|+.|++.+ ..++.+|. .+..+++|+.|++.+|++++.++. ....+
T Consensus 831 ~Ls~c~~L~~~p~-------~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L 892 (1153)
T PLN03210 831 DLSGCSRLRTFPD-------ISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL--------NISKL 892 (1153)
T ss_pred ECCCCCccccccc-------cccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc--------ccccc
Confidence 8888877765532 246788888877 45777764 567788888888888888887662 34567
Q ss_pred CCcceeecccccccccccccCCC---------ccccCCCCeEEEEecCCCccc
Q 005634 512 PSLEELNLRELRNIKKIWPDHNQ---------GMYCCQNLTTVIVDGCDHMKY 555 (686)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~~~---------~~~~l~~L~~L~i~~C~~L~~ 555 (686)
++|+.+++.+|++++.+...... ....+|+...+.+.+|.++..
T Consensus 893 ~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 78888888888877654221100 011244445566667766553
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.5e-25 Score=223.51 Aligned_cols=365 Identities=18% Similarity=0.229 Sum_probs=216.5
Q ss_pred CCCCEEEEccCCCC--CCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCC
Q 005634 124 QKDPIAISLPRRDI--QELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINL 200 (686)
Q Consensus 124 ~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L 200 (686)
++-+|-+++++|++ ..+|..+ .+++++-|.+.... ...+|+.+ +.+.+|..|++++|++.++-..++.++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~----L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK----LEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh----hhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 44566777777776 4566655 66777777776665 55666665 66777777777777766666666677777
Q ss_pred cEEEccCCCCCC---cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 201 QTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 201 r~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
|.+.++.|.++. |..|.+|..|..|||++|++++.|..+.+-+++-+|+|++|+ +..+|...+.+|+.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 777777776554 566777777777777777777777777777777777777766 7777776666677777777766
Q ss_pred CccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCcc
Q 005634 278 SFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVS 357 (686)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 357 (686)
|.+. ..+..+..+.+|++|.+++|.+... .+
T Consensus 160 NrLe---------~LPPQ~RRL~~LqtL~Ls~NPL~hf---------------------------------QL------- 190 (1255)
T KOG0444|consen 160 NRLE---------MLPPQIRRLSMLQTLKLSNNPLNHF---------------------------------QL------- 190 (1255)
T ss_pred chhh---------hcCHHHHHHhhhhhhhcCCChhhHH---------------------------------HH-------
Confidence 6543 3445555666666666665432100 00
Q ss_pred chhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccc
Q 005634 358 SLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLN 437 (686)
Q Consensus 358 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 437 (686)
.. +..+++|+.|++++....
T Consensus 191 ------------------------------rQ---LPsmtsL~vLhms~TqRT--------------------------- 210 (1255)
T KOG0444|consen 191 ------------------------------RQ---LPSMTSLSVLHMSNTQRT--------------------------- 210 (1255)
T ss_pred ------------------------------hc---Cccchhhhhhhcccccch---------------------------
Confidence 00 112334444444433211
Q ss_pred cchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCccee
Q 005634 438 NLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEEL 517 (686)
Q Consensus 438 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 517 (686)
+..++.+ ...+.+|+.++++. +++..+|. .+-.+++|+.|++++ .+++++.. ......+|++|
T Consensus 211 -l~N~Pts----ld~l~NL~dvDlS~-N~Lp~vPe--cly~l~~LrrLNLS~-N~iteL~~--------~~~~W~~lEtL 273 (1255)
T KOG0444|consen 211 -LDNIPTS----LDDLHNLRDVDLSE-NNLPIVPE--CLYKLRNLRRLNLSG-NKITELNM--------TEGEWENLETL 273 (1255)
T ss_pred -hhcCCCc----hhhhhhhhhccccc-cCCCcchH--HHhhhhhhheeccCc-Cceeeeec--------cHHHHhhhhhh
Confidence 0001111 33345555555553 44555544 345566666666655 33444331 33345566666
Q ss_pred ecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccc
Q 005634 518 NLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFI 597 (686)
Q Consensus 518 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~ 597 (686)
+++.. .|+.++... ..++.|++|.+.+. +|+.-..+++++.+.+|+.+...+ ++|+-+ |+++.
T Consensus 274 NlSrN-QLt~LP~av----cKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElV--PEglc-------- 336 (1255)
T KOG0444|consen 274 NLSRN-QLTVLPDAV----CKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELV--PEGLC-------- 336 (1255)
T ss_pred ccccc-hhccchHHH----hhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccccC--chhhh--------
Confidence 66665 555554432 25666666666654 455544566777777777777766 345433 34432
Q ss_pred ccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCCce
Q 005634 598 ELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNML 648 (686)
Q Consensus 598 ~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L~ 648 (686)
-|++|+.|. .+|..|-.+|... +-++-|+.|+++.-|+|.
T Consensus 337 ---RC~kL~kL~-L~~NrLiTLPeaI-------HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 337 ---RCVKLQKLK-LDHNRLITLPEAI-------HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhHHHHHhc-ccccceeechhhh-------hhcCCcceeeccCCcCcc
Confidence 267777777 5566666666655 567778888887777774
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-23 Score=205.56 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEE
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEIL 225 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L 225 (686)
..++|++++|. ...+...+|.++.+|+.+++..|.++.+|.......||+.|+|.+|.|.. -+.+..++.||.|
T Consensus 79 ~t~~LdlsnNk----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 79 QTQTLDLSNNK----LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ceeeeeccccc----cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 44556666665 33444445566666666666666666666555555556666666666555 2555566666666
Q ss_pred EccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 226 SLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 226 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
||+.|.|+++|. ++..=.++++|+|++|. ++.+..+.+..+.+|-+|.++.|.+.. --+..++++++|+.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNritt--------Lp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITT--------LPQRSFKRLPKLES 225 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccc--------cCHHHhhhcchhhh
Confidence 666666655543 23444456666666655 555555545556666666666665541 12234555566666
Q ss_pred EEEeecCCC
Q 005634 305 LEIQVRDAQ 313 (686)
Q Consensus 305 L~l~~~~~~ 313 (686)
|++..|.+.
T Consensus 226 LdLnrN~ir 234 (873)
T KOG4194|consen 226 LDLNRNRIR 234 (873)
T ss_pred hhcccccee
Confidence 666555443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=4e-24 Score=214.88 Aligned_cols=184 Identities=20% Similarity=0.298 Sum_probs=88.9
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
+.++.||++.+|++.++.... +++.||++++..|.. ....+|.++| +++.|.+|||++|.+.+.|..+..-+++-+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L--KnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL--KNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc--ccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 445555555555553333222 455555555555543 2334555553 555555555555555555555555555555
Q ss_pred EEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcc
Q 005634 203 LCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 203 L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
|+|++|.|.. | +-+-+|..|-+|||++|.+..+|..+.+|.+|++|+|++|. +....-..+-.+++|++|.++++..
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc
Confidence 5555555555 4 23345555555555555555555555555555555555554 2222111122334444454444432
Q ss_pred ccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCc
Q 005634 281 QWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQD 318 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 318 (686)
+ ....+..+..+.+|+.++++.|++..+|+.
T Consensus 210 T-------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 210 T-------LDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred h-------hhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 2 122333444444455555555444444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.5e-24 Score=207.19 Aligned_cols=258 Identities=23% Similarity=0.271 Sum_probs=175.0
Q ss_pred CCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~ 204 (686)
.+..+.+++|++..+.+.. .+..+.+|.+..|. ...+|+++ +.+..+..++.++|.+..+|+.++.+..|+.|+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~----l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK----LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch----hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 3566777777776665554 67777788888776 55677776 677777888888888888888888888888888
Q ss_pred ccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 205 LDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 205 L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
.+.+.+.. +++++.+..|+.|+..+|+++++|.+++++.+|..|++.++. ++.+|++. -+++.|++|+...|...
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~-i~m~~L~~ld~~~N~L~-- 196 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH-IAMKRLKHLDCNSNLLE-- 196 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH-HHHHHHHhcccchhhhh--
Confidence 88887777 778888888888888888888888888888888888887776 77777773 34778888876666543
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccc---cCCCCccEEEEcCccCccchh
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQR---VDSETSRLVELCGLANVSSLL 360 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~l~l~~~~~~~~~~ 360 (686)
..+.+++.+.+|..|++..|++..+|+.-+.+.|.++.+..+...-.+. .....+..+++++ +.+.
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd----Nklk 265 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD----NKLK 265 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc----cccc
Confidence 4566777777777778887777777744466666666654443222211 2334455555552 2233
Q ss_pred hhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCC
Q 005634 361 ENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCS 408 (686)
Q Consensus 361 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 408 (686)
......-.+++|+.|++++..- ..... .++++ .|+.|.+.|.+
T Consensus 266 e~Pde~clLrsL~rLDlSNN~i-s~Lp~---sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDI-SSLPY---SLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCchHHHHhhhhhhhcccCCcc-ccCCc---ccccc-eeeehhhcCCc
Confidence 3233333577888888876432 11111 25667 78888888776
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.9e-21 Score=192.34 Aligned_cols=338 Identities=17% Similarity=0.193 Sum_probs=209.0
Q ss_pred CCCCEEEEccCCCCCCCCCc--CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCC
Q 005634 124 QKDPIAISLPRRDIQELPKR--LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINL 200 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L 200 (686)
....+.|++++|.+..+... .++++|+.+.+..|. ...+|... ....+|+.|+|.+|.|.++- +++.-++.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~----Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE----LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch----hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhh
Confidence 34567888998888666543 388899999888887 66777743 45566888888888887653 457778888
Q ss_pred cEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 201 QTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 201 r~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
|.|||+.|.|.. + +++..=.++++|+|++|.|+.+.. .+..+.+|-+|.|+.|+ ++.+|...+.+|++|+.|++..
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccc
Confidence 899998888877 4 677777888899998888886644 47778888888888887 8888887677788888888888
Q ss_pred CccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEecCcCCcc---ccCCCCccEEEEcC
Q 005634 278 SFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICIGEALGVQ---RVDSETSRLVELCG 352 (686)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~---~~~~~~l~~l~l~~ 352 (686)
|.+.. ..-..+..+++|+.|.+..|++..+.++. .+.+++.|++..+...... .-....++.|+++.
T Consensus 231 N~iri--------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 231 NRIRI--------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred cceee--------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 87651 11234667777888888888877777766 7778887777655422211 11223334444441
Q ss_pred ccCccchhhhhhHhhhhccccEEEEccccCcccc-cccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEe
Q 005634 353 LANVSSLLENYGMKMLLKKTEDINLDELKGVQNV-VHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESL 431 (686)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 431 (686)
- ....+....| ...++|+.|.++...- +.. ... +..+..|++|.++... +..+-. .....+.+|++|
T Consensus 303 N-aI~rih~d~W--sftqkL~~LdLs~N~i-~~l~~~s---f~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~L 370 (873)
T KOG4194|consen 303 N-AIQRIHIDSW--SFTQKLKELDLSSNRI-TRLDEGS---FRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKL 370 (873)
T ss_pred h-hhheeecchh--hhcccceeEecccccc-ccCChhH---HHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhh
Confidence 1 0011111111 1345666666654221 111 011 2344556666665442 222110 123445666666
Q ss_pred eccccccchhhc-ccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecc
Q 005634 432 SLIYLNNLETIC-DSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCY 491 (686)
Q Consensus 432 ~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 491 (686)
+++. +.+...- ....+ ...+++|++|.+.+ ++++.++. ..+..+++|++|++.+..
T Consensus 371 dLr~-N~ls~~IEDaa~~-f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 371 DLRS-NELSWCIEDAAVA-FNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCcC-CeEEEEEecchhh-hccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 6665 2232211 11111 33467777777776 45666643 345667777777776644
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=6.6e-22 Score=208.37 Aligned_cols=405 Identities=17% Similarity=0.186 Sum_probs=211.6
Q ss_pred EEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCC
Q 005634 130 ISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGC 208 (686)
Q Consensus 130 l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~ 208 (686)
++.+.+..+.+|..+ .-..+..|++..|. ....|-.+.++..+|++|++++|.+..+|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~----~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNS----LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccc----cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh
Confidence 445555566666655 33347777777775 3344455556666688888888888888888888888888888888
Q ss_pred CCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccccc-
Q 005634 209 GLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVK- 286 (686)
Q Consensus 209 ~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~- 286 (686)
.|.. |.+++++.+|++|+|.+|.+..+|.++..+++|+.|+++.|. ...+|.- +..++.+..+..++| ......+
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~~~~lg~ 155 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EKIQRLGQ 155 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hhhhhhcc
Confidence 8777 778888888888888888888888888888888888888877 6777764 677777777776666 1100000
Q ss_pred -----------CCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccC
Q 005634 287 -----------GGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLAN 355 (686)
Q Consensus 287 -----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~ 355 (686)
.-....+.++..++. .|+++.|... ......+.+|+.+....+..... ....++++.+....+.-
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l-~~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSEL-EISGPSLTALYADHNPL 231 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceE-EecCcchheeeeccCcc
Confidence 001112222222222 3444444433 11111222232222110000000 00111222222221100
Q ss_pred ccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccc
Q 005634 356 VSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIY 435 (686)
Q Consensus 356 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 435 (686)
. .........+++++.++.... .++... .+.+++|+.+++....- ..++. ......+|+.|.+..
T Consensus 232 ~-----~~~~~p~p~nl~~~dis~n~l-~~lp~w---i~~~~nle~l~~n~N~l-~~lp~-----ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 232 T-----TLDVHPVPLNLQYLDISHNNL-SNLPEW---IGACANLEALNANHNRL-VALPL-----RISRITSLVSLSAAY 296 (1081)
T ss_pred e-----eeccccccccceeeecchhhh-hcchHH---HHhcccceEecccchhH-HhhHH-----HHhhhhhHHHHHhhh
Confidence 0 000011123344444332111 111111 22344444444433221 11100 122334445544444
Q ss_pred cccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcC-CccEEEEeecccceeeeccccccccccccccCCc
Q 005634 436 LNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLL-RLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSL 514 (686)
Q Consensus 436 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L 514 (686)
+ .++.++.. .+.+.+|++|++.. .++.++|+. .+.-.. +|..|+.+ |.++...+ ......++.|
T Consensus 297 n-el~yip~~----le~~~sL~tLdL~~-N~L~~lp~~-~l~v~~~~l~~ln~s-~n~l~~lp-------~~~e~~~~~L 361 (1081)
T KOG0618|consen 297 N-ELEYIPPF----LEGLKSLRTLDLQS-NNLPSLPDN-FLAVLNASLNTLNVS-SNKLSTLP-------SYEENNHAAL 361 (1081)
T ss_pred h-hhhhCCCc----ccccceeeeeeehh-ccccccchH-HHhhhhHHHHHHhhh-hccccccc-------cccchhhHHH
Confidence 2 23333332 34467777777766 456666541 122122 24444433 23344433 1233456778
Q ss_pred ceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceE
Q 005634 515 EELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGI 582 (686)
Q Consensus 515 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l 582 (686)
+.|++.+. .+++-+... ..++.+|+.|+++.. .|..+ |.+.+++++.|++|.++| .+|+.+
T Consensus 362 q~LylanN-~Ltd~c~p~---l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSG-NkL~~L 422 (1081)
T KOG0618|consen 362 QELYLANN-HLTDSCFPV---LVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSG-NKLTTL 422 (1081)
T ss_pred HHHHHhcC-cccccchhh---hccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhccc-chhhhh
Confidence 88888887 555532222 357888999999886 67766 456778888999999988 456655
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.9e-23 Score=199.74 Aligned_cols=409 Identities=21% Similarity=0.263 Sum_probs=206.5
Q ss_pred CEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
+.++++++|.+..+|+.+ .+.+++.+++++|. ...+|+++ +.+..|..++..+|+++++|++++++..|..|++
T Consensus 93 l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~----~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 93 LKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE----LKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHhhcccchHhhccHHHhhhhhhhhhhccccc----eeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhc
Confidence 344444444444444433 44444444444444 33344443 3444444444444445555554444445555555
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
.++.++. |+..-+++.|++||...|.++.+|..++.+.+|..|++..|+ +..+|. ++.+..|.+|++..|.+.
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~--- 241 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIE--- 241 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHH---
Confidence 5554444 333333555555555555555555555555555555555544 555553 455555555555444433
Q ss_pred ccCCCccchhh-hCCCCCccEEEEeecCCCcCCCcc-cccCccEEEEEecCcCCc--cccCCCCccEEEEcCccCccchh
Q 005634 285 VKGGRNASLAE-LKGLSKLTTLEIQVRDAQILPQDL-VFVELQRYRICIGEALGV--QRVDSETSRLVELCGLANVSSLL 360 (686)
Q Consensus 285 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~ 360 (686)
-.+++ ++++..+..|++..|++..+|.++ .+++|++|+++.+..... +.+.. +++.+.+.|-. ...++
T Consensus 242 ------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiR 313 (565)
T KOG0472|consen 242 ------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIR 313 (565)
T ss_pred ------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHH
Confidence 22333 558889999999999999999998 778899999887764332 22333 56666666442 11221
Q ss_pred h---hhhHhhhhccccEE----EEccccCcccc-----cccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcc
Q 005634 361 E---NYGMKMLLKKTEDI----NLDELKGVQNV-----VHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLL 428 (686)
Q Consensus 361 ~---~~~~~~~~~~L~~L----~l~~~~~~~~~-----~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 428 (686)
. ..+....++.|++- -++.-.+-+.. .+.++.....-+.+.|.+++-. ++.++++.+. .+.-.-.
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfe--a~~~~~V 390 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFE--AAKSEIV 390 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHH--Hhhhcce
Confidence 1 11222333333320 01111111110 1111112234456667766542 3333221110 0000011
Q ss_pred cEeeccccccchhhccc-------------------CCC-CCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEe
Q 005634 429 ESLSLIYLNNLETICDS-------------------QLT-EDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVA 488 (686)
Q Consensus 429 ~~L~l~~~~~l~~~~~~-------------------~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 488 (686)
.+.+++. +.+.++|.. .++ ....+++|..|++++ +-+.++|. .++.+..|+.|+|+
T Consensus 391 t~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~--e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 391 TSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE--EMGSLVRLQTLNLS 466 (565)
T ss_pred EEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch--hhhhhhhhheeccc
Confidence 2222222 112221111 000 145678888888887 34667765 45667778888887
Q ss_pred ecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccC
Q 005634 489 SCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQL 568 (686)
Q Consensus 489 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 568 (686)
.. ....+| ........|+.+-.++. .+..+... +...+.+|..|++.+. .+..+|| +++++++|
T Consensus 467 ~N-rFr~lP--------~~~y~lq~lEtllas~n-qi~~vd~~---~l~nm~nL~tLDL~nN-dlq~IPp--~LgnmtnL 530 (565)
T KOG0472|consen 467 FN-RFRMLP--------ECLYELQTLETLLASNN-QIGSVDPS---GLKNMRNLTTLDLQNN-DLQQIPP--ILGNMTNL 530 (565)
T ss_pred cc-ccccch--------HHHhhHHHHHHHHhccc-cccccChH---HhhhhhhcceeccCCC-chhhCCh--hhccccce
Confidence 64 333333 12222233444444443 55554333 2456888999999886 6777754 68899999
Q ss_pred cEEEEeecc
Q 005634 569 QYLEISYCS 577 (686)
Q Consensus 569 ~~L~i~~C~ 577 (686)
++|++++.+
T Consensus 531 ~hLeL~gNp 539 (565)
T KOG0472|consen 531 RHLELDGNP 539 (565)
T ss_pred eEEEecCCc
Confidence 999999866
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.3e-21 Score=204.32 Aligned_cols=417 Identities=18% Similarity=0.163 Sum_probs=238.5
Q ss_pred CCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~ 204 (686)
++++|++++|.+...|..+ .+++|+.|.++.|. ...+|.+. .++++|++|.|.+|....+|.++..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~----i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY----IRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh----HhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 3788888888888888776 67888888888886 56677655 788888888888888888888888888888888
Q ss_pred ccCCCCCC-cccccCCCCCCEEEccCC-CCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 205 LDGCGLKD-IAIVGQLKKLEILSLRDS-KIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 205 L~~~~l~~-~~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
++.|.+.. |..+..+..+..++.++| ++..++. .. .+++++..+.....++.+ +..++. .|++.+|.+.
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME- 191 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-
Confidence 88888777 777888888888888887 4434432 22 667777766655556655 566666 6888777653
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCcc-ccCCCCccEEEEcCccCccchhh
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQ-RVDSETSRLVELCGLANVSSLLE 361 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~ 361 (686)
...+..+.+|+.+....+++..+.. .-.+|+.+....+...... ...+.+++.++++. ..+..
T Consensus 192 ----------~~dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~----n~l~~ 255 (1081)
T KOG0618|consen 192 ----------VLDLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH----NNLSN 255 (1081)
T ss_pred ----------hhhhhhccchhhhhhhhcccceEEe--cCcchheeeeccCcceeeccccccccceeeecch----hhhhc
Confidence 3456666666666665554432211 2223333333333221110 12233555555551 11111
Q ss_pred hhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchh
Q 005634 362 NYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLET 441 (686)
Q Consensus 362 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 441 (686)
.......+.+|+.+......- ..+... .....+|+.|.+..+. +++++. ....+.+|++|++.. +++..
T Consensus 256 lp~wi~~~~nle~l~~n~N~l-~~lp~r---i~~~~~L~~l~~~~ne-l~yip~-----~le~~~sL~tLdL~~-N~L~~ 324 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRL-VALPLR---ISRITSLVSLSAAYNE-LEYIPP-----FLEGLKSLRTLDLQS-NNLPS 324 (1081)
T ss_pred chHHHHhcccceEecccchhH-HhhHHH---HhhhhhHHHHHhhhhh-hhhCCC-----cccccceeeeeeehh-ccccc
Confidence 112222344555554433221 111111 1123333333333331 222211 122234444444432 11222
Q ss_pred hcccC----------------------CCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecc
Q 005634 442 ICDSQ----------------------LTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGK 499 (686)
Q Consensus 442 ~~~~~----------------------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 499 (686)
++... ..+...++.|+.|.+.+ +.+++- ....+.++++|+.|++++ ..+.+++
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~-c~p~l~~~~hLKVLhLsy-NrL~~fp-- 399 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDS-CFPVLVNFKHLKVLHLSY-NRLNSFP-- 399 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cccccc-chhhhccccceeeeeecc-cccccCC--
Confidence 21110 00134466677777766 334442 122467788888888876 3455454
Q ss_pred ccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCc
Q 005634 500 NKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSM 579 (686)
Q Consensus 500 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 579 (686)
......++.|++|+++|. +|+.++.... .++.|++|...+. ++..+| -+..+++|+.++++ |.+|
T Consensus 400 -----as~~~kle~LeeL~LSGN-kL~~Lp~tva----~~~~L~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS-~N~L 464 (1081)
T KOG0618|consen 400 -----ASKLRKLEELEELNLSGN-KLTTLPDTVA----NLGRLHTLRAHSN-QLLSFP---ELAQLPQLKVLDLS-CNNL 464 (1081)
T ss_pred -----HHHHhchHHhHHHhcccc-hhhhhhHHHH----hhhhhHHHhhcCC-ceeech---hhhhcCcceEEecc-cchh
Confidence 234566777888888887 7777764433 5677777776664 565653 35678888888884 5677
Q ss_pred ceEecCCCCccCCCCccccccccccccccccccccc
Q 005634 580 EGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRK 615 (686)
Q Consensus 580 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~ 615 (686)
..+..++... -|+|+.|++.+-+.
T Consensus 465 ~~~~l~~~~p------------~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 465 SEVTLPEALP------------SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhCC------------CcccceeeccCCcc
Confidence 7665443322 26777777766554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-19 Score=150.12 Aligned_cols=166 Identities=25% Similarity=0.349 Sum_probs=118.5
Q ss_pred CCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccc
Q 005634 138 QELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIV 216 (686)
Q Consensus 138 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i 216 (686)
..++..+.++++..|.++.|. ...+|+.+ ..+++|++|++++|+++++|.+++.++.||.|++.-|++.. |..|
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK----l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK----LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hhcccccchhhhhhhhcccCc----eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 444555566667777777776 45566665 67777777777777777777777777777777777777666 7777
Q ss_pred cCCCCCCEEEccCCCCC--CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchh
Q 005634 217 GQLKKLEILSLRDSKIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLA 294 (686)
Q Consensus 217 ~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 294 (686)
|.++.|+.||+.+|++. .+|..+-.++.|+.|+++++. ...+|++ ++++++||.|.+..|... ..+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~lpk 167 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SLPK 167 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hCcH
Confidence 77777777777777665 677767667777777777766 6777777 777777777777766543 4566
Q ss_pred hhCCCCCccEEEEeecCCCcCCCcc
Q 005634 295 ELKGLSKLTTLEIQVRDAQILPQDL 319 (686)
Q Consensus 295 ~l~~l~~L~~L~l~~~~~~~~~~~~ 319 (686)
+++.+..|++|++.+|.+..+|.++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 7777777777777777777776654
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.9e-18 Score=145.44 Aligned_cols=151 Identities=22% Similarity=0.362 Sum_probs=141.8
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
...+.+|.+++|.+..+|+.+ ++.+|++|++++|. ...+|.++ +.+.+||.|++.-|.+..+|..|+.++.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq----ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ----IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch----hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhh
Confidence 567889999999999999888 89999999999997 67899988 8999999999999999999999999999999
Q ss_pred EEccCCCCCC---cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc
Q 005634 203 LCLDGCGLKD---IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 203 L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 279 (686)
|||+.|.+.+ |..|..+..|+.|.++.|.+.-+|..++++++||.|.++.+. +-.+|.+ ++.++.|++|.+.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccce
Confidence 9999999765 788999999999999999999999999999999999999988 8899998 9999999999999998
Q ss_pred cc
Q 005634 280 SQ 281 (686)
Q Consensus 280 ~~ 281 (686)
..
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 76
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=2e-14 Score=160.82 Aligned_cols=127 Identities=23% Similarity=0.292 Sum_probs=100.6
Q ss_pred cCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCC--CCC--cccccCCCCCCEEEccCC-CCCCcchhhcCCCCCC
Q 005634 172 EGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCG--LKD--IAIVGQLKKLEILSLRDS-KIKQLPLEIGQLTRLQ 246 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~--l~~--~~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~ 246 (686)
.+....|...+.++.+..++... +++.|++|-+.++. +.. ...|..++.|++||+++| .+.++|.+|++|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 35567788888888887776654 44579999988885 455 356889999999999988 8899999999999999
Q ss_pred EEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEee
Q 005634 247 LLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQV 309 (686)
Q Consensus 247 ~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 309 (686)
+|+++++. ++.+|.+ +++|.+|.+|++..+... ......+..+++||+|.+..
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL--------ESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc--------ccccchhhhcccccEEEeec
Confidence 99999988 9999999 999999999999877543 12233444577777777663
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=6.6e-13 Score=145.49 Aligned_cols=157 Identities=21% Similarity=0.231 Sum_probs=100.1
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
.-..|+++.+.+..+|..+ .++|+.|.+.+|. ...+|. ...+|++|++++|.++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~----Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNN----LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCc----CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 3456777777777777654 2467777777776 334553 246777888888777777643 356777777
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
++|.++. |.. ..+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. ..+|+.|++++|.+.
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~--- 335 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT--- 335 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccc---
Confidence 7777666 432 24577777777777777653 3567777777775 6666642 234666777776654
Q ss_pred ccCCCccchhhhCCCCCccEEEEeecCCCcCCC
Q 005634 285 VKGGRNASLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
..+ .+ ..+|+.|++++|.+..+|.
T Consensus 336 ---~LP----~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 336 ---SLP----TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ---ccc----cc--ccccceEecCCCccCCCCC
Confidence 111 11 1367777777776666554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=1.6e-12 Score=142.58 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=134.8
Q ss_pred chhhhhcccCCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh
Q 005634 114 DVKKKMEETIQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS 193 (686)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 193 (686)
.+..+|. ....+++.|++.+|.+..+|.. .++|++|++++|. ...+|. ...+|+.|++++|.++.+|..
T Consensus 212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~----LtsLP~----lp~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 212 GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ----LTSLPV----LPPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc----cCcccC----cccccceeeccCCchhhhhhc
Confidence 4445565 3456899999999999988864 6899999999998 445664 246889999999999988864
Q ss_pred hhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcE
Q 005634 194 LGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKE 272 (686)
Q Consensus 194 l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~ 272 (686)
. ..|+.|++++|+++. |.. +++|++|++++|.++.+|... .+|+.|++++|. ++.+|.- ..+|++
T Consensus 281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~ 346 (788)
T PRK15387 281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQE 346 (788)
T ss_pred h---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccce
Confidence 3 578899999999888 542 478999999999999887633 357788899887 7888852 258999
Q ss_pred EEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEec
Q 005634 273 LYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIG 332 (686)
Q Consensus 273 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 332 (686)
|++++|.+. ..+.. ..+|+.|+++.|.+..+|.. ..+|+.|++..+
T Consensus 347 LdLS~N~Ls------~LP~l------p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 347 LSVSDNQLA------SLPTL------PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 392 (788)
T ss_pred EecCCCccC------CCCCC------CcccceehhhccccccCccc--ccccceEEecCC
Confidence 999999876 11111 23677888888887777653 245666666544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=7.9e-13 Score=145.87 Aligned_cols=248 Identities=16% Similarity=0.181 Sum_probs=149.3
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
..+...+.++++.+..+|..+ .++++.|++++|. ...+|..++ .+|+.|++++|.++.+|..+. .+|+.|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~----LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNE----LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCC----CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence 345667777777777676543 3567777777776 345666553 467777777777777776553 367777
Q ss_pred EccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 204 CLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 204 ~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. ++.+|.. +. ++|+.|++++|.+..
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTA 318 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcccc
Confidence 777777766 55443 467777777777777776554 467777777776 6677654 22 467777777766541
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhh
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLEN 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 362 (686)
.+..+ .++|+.|.++.|.+..+|..+. .+|+.|++..+..........+.++.|.+.++. ...++
T Consensus 319 ---------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~-Lt~LP-- 383 (754)
T PRK15370 319 ---------LPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNA-LTNLP-- 383 (754)
T ss_pred ---------CCccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCc-CCCCC--
Confidence 11111 1467777777777666665442 567777666554332222223567777777542 22222
Q ss_pred hhHhhhhccccEEEEccccCcccccccCCC-CCCCCCCceEEeecCC
Q 005634 363 YGMKMLLKKTEDINLDELKGVQNVVHELDD-GEGFPRLKHLQVKLCS 408 (686)
Q Consensus 363 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~ 408 (686)
..+ ..+|+.|++.++. +..+...++. ...++++..|.+.+.+
T Consensus 384 ~~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 ENL---PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhH---HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 222 2357777777643 2232222221 2345788899998775
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=6e-13 Score=146.80 Aligned_cols=245 Identities=20% Similarity=0.218 Sum_probs=128.2
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEE
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILS 226 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~ 226 (686)
+...|++.++. ...+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~----LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILG----LTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCC----cCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 44566666665 33455433 2356777777777777766543 467777777776666 44332 3577777
Q ss_pred ccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEE
Q 005634 227 LRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLE 306 (686)
Q Consensus 227 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 306 (686)
+++|.++.+|..+. .+|+.|++++|. +..+|.. +. .+|++|++++|.+. .. +..+. ++|+.|+
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt------~L---P~~lp--~sL~~L~ 310 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIR------TL---PAHLP--SGITHLN 310 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccc------cC---cccch--hhHHHHH
Confidence 77777777766654 367777777665 6666654 32 46777777776554 11 11111 2466666
Q ss_pred EeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccc
Q 005634 307 IQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNV 386 (686)
Q Consensus 307 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 386 (686)
+++|.+..+|... ..+|+.|.+..+..........++++.|.+.+.. ...+ +.. ..++|+.|++.++. +..+
T Consensus 311 Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-L~~L--P~~---lp~~L~~LdLs~N~-Lt~L 382 (754)
T PRK15370 311 VQSNSLTALPETL-PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ-ITVL--PET---LPPTITTLDVSRNA-LTNL 382 (754)
T ss_pred hcCCccccCCccc-cccceeccccCCccccCChhhcCcccEEECCCCC-CCcC--Chh---hcCCcCEEECCCCc-CCCC
Confidence 6666666655433 2456666655444222222223466666666442 1111 111 13466777766643 2222
Q ss_pred cccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccc
Q 005634 387 VHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIY 435 (686)
Q Consensus 387 ~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 435 (686)
...+ .++|+.|+++++. +..++.. ........+++..|.+.+
T Consensus 383 P~~l-----~~sL~~LdLs~N~-L~~LP~s-l~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 383 PENL-----PAALQIMQASRNN-LVRLPES-LPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred CHhH-----HHHHHHHhhccCC-cccCchh-HHHHhhcCCCccEEEeeC
Confidence 1111 1256666666643 3332210 000112345666666655
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.29 E-value=1.4e-13 Score=133.84 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=47.1
Q ss_pred CCcEEEccCCC-CCC-c--ccccCCCCCCEEEccCC-CCC--CcchhhcCCCCCCEEeCcCCcCccccChh-hhcCCCCC
Q 005634 199 NLQTLCLDGCG-LKD-I--AIVGQLKKLEILSLRDS-KIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPN-VISKFSRL 270 (686)
Q Consensus 199 ~Lr~L~L~~~~-l~~-~--~~i~~L~~L~~L~l~~~-~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~l~~l~~L 270 (686)
.||.|.++||. +.. + ....+++++++|++.+| +++ .+-.--..+.+|++|++..|..++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666665 333 2 33456677777777776 454 22112234667777777777666654322 23456777
Q ss_pred cEEEecCCc
Q 005634 271 KELYMGDSF 279 (686)
Q Consensus 271 ~~L~l~~~~ 279 (686)
.++++++|.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 777777765
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=1.6e-13 Score=133.38 Aligned_cols=290 Identities=17% Similarity=0.170 Sum_probs=185.5
Q ss_pred CCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCccccccc-CCCCCCCCCCceEEeecCCCceEeeccccc
Q 005634 341 DSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHE-LDDGEGFPRLKHLQVKLCSEILHIVGSVGR 419 (686)
Q Consensus 341 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 419 (686)
..++..+|.+.+|.+.+... .......+++++.+.+..|..+++..-. + ...+++|++|+++.|+.+.. ...-
T Consensus 162 ~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l--a~gC~kL~~lNlSwc~qi~~---~gv~ 235 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYL--AEGCRKLKYLNLSWCPQISG---NGVQ 235 (483)
T ss_pred hCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHH--HHhhhhHHHhhhccCchhhc---Ccch
Confidence 34556666666665333322 4445566788888888888877776321 2 46788888888888887654 1111
Q ss_pred cccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecc
Q 005634 420 VRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGK 499 (686)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 499 (686)
....+...++.+...+|..++.-..... .+.++.+.++++..|..+++..-......+..|+.|..++|..+.+.+.
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~--~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l- 312 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLKA--AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL- 312 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHHH--hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH-
Confidence 1233455577777777765543111111 3456777778888888887765433445678888888888888766541
Q ss_pred ccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCc
Q 005634 500 NKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSM 579 (686)
Q Consensus 500 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 579 (686)
..-....++|+.|.+.+|..+++...... ..+++.|+.+++.+|...++-...+...+++.|+.|.+++|..+
T Consensus 313 -----~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 313 -----WALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred -----HHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 12334568888888888877766543332 35678888888888877766533455678888898888888866
Q ss_pred ceEecCCCCccCCCCccccccccccccccccccccccc--ccccCCcccccccccCCCcceeeecCCCCceeeccc----
Q 005634 580 EGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLT--SFANTGHIHSDLVVEFPSLLNLNIDGCSNMLRFIST---- 653 (686)
Q Consensus 580 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~--~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~---- 653 (686)
++- +....+.. ......|..+.+.+||.++ .+..+. .+++|+.++..+|....+-+..
T Consensus 386 tD~----gi~~l~~~----~c~~~~l~~lEL~n~p~i~d~~Le~l~--------~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 386 TDE----GIRHLSSS----SCSLEGLEVLELDNCPLITDATLEHLS--------ICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred hhh----hhhhhhhc----cccccccceeeecCCCCchHHHHHHHh--------hCcccceeeeechhhhhhhhhHHHHh
Confidence 532 22211100 0114567788888888876 334443 7889999999999888775433
Q ss_pred cCCCCCCCC
Q 005634 654 SSPEDTNHS 662 (686)
Q Consensus 654 ~~~~~~~~~ 662 (686)
++|....+.
T Consensus 450 ~lp~i~v~a 458 (483)
T KOG4341|consen 450 HLPNIKVHA 458 (483)
T ss_pred hCccceehh
Confidence 566665554
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1.7e-12 Score=130.93 Aligned_cols=178 Identities=22% Similarity=0.303 Sum_probs=153.8
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
+......+++.|++..+|..+ .+..|..+.++.|. ...+|..+ .++..|.+|+|+.|+++.+|..++.|+ |++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~----~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC----IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc----ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 444567788899999998877 67889999999887 66788877 799999999999999999999888765 999
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
|-+++|+++. |+.++.+.+|..||.+.|.+..+|..++.+.+|+.|+++.|. +..+|.+ ++ --.|..||++.|.+.
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCcee
Confidence 9999999988 899999999999999999999999999999999999999987 8889988 66 445889999988775
Q ss_pred cccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL 319 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 319 (686)
..+..+.+|+.|++|.+.+|.+..-|..+
T Consensus 225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ---------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 46678889999999999998888777666
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=5.7e-12 Score=121.68 Aligned_cols=137 Identities=23% Similarity=0.295 Sum_probs=93.4
Q ss_pred CCchhhhhcccCCCCCEEEEccCCCCCCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecC-ccCC
Q 005634 112 VADVKKKMEETIQKDPIAISLPRRDIQELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNR-IHFS 188 (686)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~ 188 (686)
+..+..+|. +.......|.|..|.+..+|+.. .+++||.|+|+.|. +..|-+..|..++.|..|-+.+ |.|+
T Consensus 55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 445555665 45667778888888888887655 67888888888887 3455555567777776666665 7777
Q ss_pred CCchh-hhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCC
Q 005634 189 SLPSS-LGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDC 253 (686)
Q Consensus 189 ~lp~~-l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 253 (686)
.+|.. |++|..|+-|.+.-|++.- ...+..|++|..|.+..|.+..++. .+..+..++++.+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 77763 6677777777777777655 3667777777777777777766665 4566666666655443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.2e-11 Score=106.40 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=37.7
Q ss_pred CCCCccEEEecCccCCCCchhhh-cCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhh-cCCCCCCEEeC
Q 005634 173 GTEELKVLSLNRIHFSSLPSSLG-RLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI-GQLTRLQLLDL 250 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~~lp~~l~-~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l 250 (686)
+..++|.|+|.++.|+.+. .++ .+.+|+.|++++|.|+..+.+..+++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445566666666665542 343 35566666666666666555666666666666666666665444 24666666666
Q ss_pred cCCcCccccCh-hhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEE
Q 005634 251 SDCRSLVVIAP-NVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI 307 (686)
Q Consensus 251 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 307 (686)
++|. +.++.. ..++.+++|++|++.+|.+. ........-+..+++|+.|+-
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-----~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-----EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG-----GSTTHHHHHHHH-TT-SEETT
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCccc-----chhhHHHHHHHHcChhheeCC
Confidence 6655 433321 11455666666666666554 112223334555556665543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=3.8e-11 Score=123.02 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=7.4
Q ss_pred CCCcCEEEEecC
Q 005634 453 FSNLRIIKVRNS 464 (686)
Q Consensus 453 l~~L~~L~l~~c 464 (686)
+++|++++++++
T Consensus 277 ~~~L~~l~l~~N 288 (319)
T cd00116 277 KESLLELDLRGN 288 (319)
T ss_pred CCCccEEECCCC
Confidence 456666666664
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=2e-11 Score=118.04 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=116.1
Q ss_pred cCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccC-CCC
Q 005634 133 PRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDG-CGL 210 (686)
Q Consensus 133 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~-~~l 210 (686)
.+..+..+|... -+....+.|..|. +..+|+..|+.+++||.|||+.|.|+.+ |+.|..+..|-.|.+.+ |+|
T Consensus 54 r~~GL~eVP~~L-P~~tveirLdqN~----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 54 RGKGLTEVPANL-PPETVEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cCCCcccCcccC-CCcceEEEeccCC----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 334455566543 2355678899997 6789999999999999999999999975 77899999988887777 779
Q ss_pred CC-c-ccccCCCCCCEEEccCCCCCCcc-hhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc
Q 005634 211 KD-I-AIVGQLKKLEILSLRDSKIKQLP-LEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 211 ~~-~-~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 279 (686)
++ | ..|++|..|+.|.+.-|.+..++ +.+..|++|..|.+..+. +..++.+.+..+..++++.+..+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 99 6 78999999999999999998554 458999999999999987 888888768888888888776554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.3e-11 Score=113.14 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=135.7
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhH-------------------hcCCCCccEEEec
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLF-------------------FEGTEELKVLSLN 183 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------~~~l~~Lr~L~l~ 183 (686)
.+++..+-++.++-..+.... .-|.|+++.+....++....-+|... ...++.|..+|++
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 455556666665554443332 34566666665543221111122211 1346779999999
Q ss_pred CccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhh
Q 005634 184 RIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNV 263 (686)
Q Consensus 184 ~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~ 263 (686)
+|.|+.+-+++.-++.+|.|+++.|.+....++..|++|+.||+++|.++++-..-.+|.|.++|.+++|. +..+..
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG-- 369 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG-- 369 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh--
Confidence 99999998999899999999999999888777999999999999999888775556678899999999987 888876
Q ss_pred hcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCC
Q 005634 264 ISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 264 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
+++|-+|..|++.+|.+.. ......+++++-|+++.+.+|.+..+++
T Consensus 370 L~KLYSLvnLDl~~N~Ie~-------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEE-------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhheeccccccchhh-------HHHhcccccccHHHHHhhcCCCccccch
Confidence 8999999999999998751 2235678899999999998887765554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.1e-10 Score=104.90 Aligned_cols=136 Identities=25% Similarity=0.354 Sum_probs=52.3
Q ss_pred cCccCCCCchhhhcCCCCcEEEccCCCCCCccccc-CCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccCh
Q 005634 183 NRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVG-QLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAP 261 (686)
Q Consensus 183 ~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~-~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 261 (686)
..+.+...|. +.+..++|.|+|+++.|+.++.++ .+.+|+.|++++|.|+.++ ++..+++|++|++++|. ++.++.
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CH
T ss_pred cccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCcccc
Confidence 3344555554 456678999999999999988887 6899999999999999984 68899999999999998 899876
Q ss_pred hhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc-----cccCccEEE
Q 005634 262 NVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL-----VFVELQRYR 328 (686)
Q Consensus 262 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L~ 328 (686)
.....+++|++|++++|.+. ....+..++.+++|+.|++.+|.....+..- .+++|+.|+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~-------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS-------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHH-TT--EEE-TTS----------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred chHHhCCcCCEEECcCCcCC-------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 52347999999999999875 2334678889999999999999876544321 556666653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=7.7e-12 Score=126.30 Aligned_cols=187 Identities=21% Similarity=0.281 Sum_probs=157.5
Q ss_pred EEEccCCCCCCCCCc---CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 129 AISLPRRDIQELPKR---LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 129 ~l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
++.|++.+...+|.. .++.--...+++.|. ...+|..+ ..+..|..+.+..|.+..+|..++++..|.+|+|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR----~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR----FSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDL 128 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc----cccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhh
Confidence 345555555444432 255566677888887 55788876 6788899999999999999999999999999999
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
+.|++.. |..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~--- 202 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE--- 202 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh---
Confidence 9999988 87777765 899999999999999999999999999999998 9999998 999999999999988765
Q ss_pred ccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc-cccCccEEEEEecC
Q 005634 285 VKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL-VFVELQRYRICIGE 333 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~ 333 (686)
..++++..|+ |..|+++.|++..+|-.+ .++.|+.|.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 5677888665 899999999999999998 99999998876544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=6.7e-10 Score=113.75 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=39.8
Q ss_pred CCccEEEecCccCC-----CCchhhhcCCCCcEEEccCCCCCC------cccccCCCCCCEEEccCCCCC-----Ccchh
Q 005634 175 EELKVLSLNRIHFS-----SLPSSLGRLINLQTLCLDGCGLKD------IAIVGQLKKLEILSLRDSKIK-----QLPLE 238 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~-----~lp~~l~~l~~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~l~~~~i~-----~lp~~ 238 (686)
++|+.|++++|.++ .++..+..+.+|++|++++|.+++ +..+..+++|++|++++|.++ .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 55555555555554 233334445555555555555442 122333445555555555544 22333
Q ss_pred hcCCCCCCEEeCcCCc
Q 005634 239 IGQLTRLQLLDLSDCR 254 (686)
Q Consensus 239 i~~L~~L~~L~l~~~~ 254 (686)
+.++++|++|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 217 LASLKSLEVLNLGDNN 232 (319)
T ss_pred hcccCCCCEEecCCCc
Confidence 4455555555555554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.5e-09 Score=114.40 Aligned_cols=187 Identities=25% Similarity=0.318 Sum_probs=112.3
Q ss_pred EEccCCCC-CCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCC-CccEEEecCccCCCCchhhhcCCCCcEEEccC
Q 005634 130 ISLPRRDI-QELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTE-ELKVLSLNRIHFSSLPSSLGRLINLQTLCLDG 207 (686)
Q Consensus 130 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~ 207 (686)
+....+.+ .........+.+..|.+.++. ...++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~----i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN----ITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc----cccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 44444444 333333345666667766665 34455543 3443 67777777777776666666777777777777
Q ss_pred CCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccccc
Q 005634 208 CGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVK 286 (686)
Q Consensus 208 ~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 286 (686)
|.+.+ +...+.+.+|+.|+++++.++.+|..++.+..|++|.++++. ....+.. +.++.++..+.+.++...
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~----- 245 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE----- 245 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-----
Confidence 77666 455556677777777777777777666666667777776664 3333333 566666666665555432
Q ss_pred CCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEec
Q 005634 287 GGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIG 332 (686)
Q Consensus 287 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 332 (686)
..+..++.+.+++.|+++.|.+..++....+.+++.+.+...
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 113455666666777777666666665446666666665433
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=2.4e-10 Score=106.48 Aligned_cols=128 Identities=24% Similarity=0.237 Sum_probs=73.9
Q ss_pred CCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCc-ccccCCCCCCE
Q 005634 146 CPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDI-AIVGQLKKLEI 224 (686)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~-~~i~~L~~L~~ 224 (686)
...|.++++++|. +..+.+++ .-.+.+|+|+++.|.+..+-. +..+++|+.|||++|.++.. ..-.+|-|.++
T Consensus 283 Wq~LtelDLS~N~----I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNL----ITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccc----hhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 4456666666665 33344443 455666666666666655432 55666666666666665552 33345566666
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccCh-hhhcCCCCCcEEEecCCccc
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAP-NVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~ 281 (686)
|.+++|.|..+ .++++|.+|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+.
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66666666655 456666666666666665 444321 11666666666666666543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.2e-09 Score=113.26 Aligned_cols=172 Identities=24% Similarity=0.333 Sum_probs=94.2
Q ss_pred CCCEEEEccCCCCCCCCCcCCCC--CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 125 KDPIAISLPRRDIQELPKRLQCP--HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
..+..+++.++.+..++...... +|+.|++++|. ...+|..+ +.++.|+.|+++.|.+.++|...+.++.|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~----i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK----IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc----hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34556666666665555555332 56666666665 33343222 5566666666666666666555555566666
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
|+++++.+.+ |..++.+.+|++|.+++|.+...+..+.++.++..|.+.+++ +..++.. ++.++++++|++++|.+.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc
Confidence 6666666555 444455555666666665555555555666666666555544 4443333 555666666666655543
Q ss_pred cccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
.+..++.+.+++.|+++++...
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----------ccccccccCccCEEeccCcccc
Confidence 2222555555666666555433
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.9e-09 Score=101.79 Aligned_cols=190 Identities=22% Similarity=0.159 Sum_probs=123.6
Q ss_pred CCCCCEEEEccCCCCCCCCC--cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh--hhcC
Q 005634 123 IQKDPIAISLPRRDIQELPK--RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS--LGRL 197 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--l~~l 197 (686)
..+++|.+++.++.+...+. .. .|++++.|+|++|-+. ....-..+...+++|+.|+++.|.+...-++ -..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 36678888888888866653 22 7889999999888632 1122234567888899999988877543222 1357
Q ss_pred CCCcEEEccCCCCCC--c-ccccCCCCCCEEEccCC-CCCCcchhhcCCCCCCEEeCcCCcCccccC-hhhhcCCCCCcE
Q 005634 198 INLQTLCLDGCGLKD--I-AIVGQLKKLEILSLRDS-KIKQLPLEIGQLTRLQLLDLSDCRSLVVIA-PNVISKFSRLKE 272 (686)
Q Consensus 198 ~~Lr~L~L~~~~l~~--~-~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~l~~l~~L~~ 272 (686)
.+|+.|.+++|.++. . ...-..++|+.|++.+| .+..--.+...++.|+.|+|++|. +...+ ...++.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhh
Confidence 788888888888765 3 44456788888888888 443222334456778888888887 44443 112678888888
Q ss_pred EEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCC
Q 005634 273 LYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 273 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
|+++.|.+..... -+..........++|+.|.+..|.+...+.
T Consensus 276 Lnls~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 276 LNLSSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hhccccCcchhcC--CCccchhhhcccccceeeecccCccccccc
Confidence 8888877641110 112223334566778888888777655443
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-09 Score=100.92 Aligned_cols=188 Identities=22% Similarity=0.113 Sum_probs=109.5
Q ss_pred CCCEEEccCCCCC--CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCC
Q 005634 221 KLEILSLRDSKIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKG 298 (686)
Q Consensus 221 ~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 298 (686)
.||+|||+.+.|+ .+..-+..+.+|+.|.+.+...-..+... |.+=.+|+.|++++|... +..+.---+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~------t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF------TENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc------chhHHHHHHHh
Confidence 4888899888777 55555677888888888887733334443 777788888988887633 22233344677
Q ss_pred CCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEc
Q 005634 299 LSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLD 378 (686)
Q Consensus 299 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 378 (686)
++.|..|+++||....-.-.... ....++++.|.++|+.++-........
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V-----------------~hise~l~~LNlsG~rrnl~~sh~~tL------------- 308 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAV-----------------AHISETLTQLNLSGYRRNLQKSHLSTL------------- 308 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHH-----------------hhhchhhhhhhhhhhHhhhhhhHHHHH-------------
Confidence 88888888888864311000000 112335566666666432222111122
Q ss_pred cccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCE
Q 005634 379 ELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRI 458 (686)
Q Consensus 379 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 458 (686)
..++|+|.+|++++|-.++. ........|+.|++|.++.|..+. +..+-+....|+|.+
T Consensus 309 --------------~~rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 309 --------------VRRCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVY 367 (419)
T ss_pred --------------HHhCCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCC---hHHeeeeccCcceEE
Confidence 23556666666666654432 111134456777777777666443 111112667888888
Q ss_pred EEEecCCC
Q 005634 459 IKVRNSQK 466 (686)
Q Consensus 459 L~l~~c~~ 466 (686)
|++.+|-.
T Consensus 368 Ldv~g~vs 375 (419)
T KOG2120|consen 368 LDVFGCVS 375 (419)
T ss_pred EEeccccC
Confidence 88888753
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-08 Score=100.56 Aligned_cols=179 Identities=22% Similarity=0.235 Sum_probs=131.8
Q ss_pred cCCCCCEEEEccCCCCCCCCC---cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC--CCchhhh
Q 005634 122 TIQKDPIAISLPRRDIQELPK---RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS--SLPSSLG 195 (686)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~ 195 (686)
....+++.|+++.|-+..+.. .. .+++|+.|+++.|.+......... ..+.+|+.|.+++|+++ ++-..+.
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhhhhhheEEeccCCCCHHHHHHHHH
Confidence 447789999999997754433 22 799999999999985433333333 36788999999999987 3434456
Q ss_pred cCCCCcEEEccCCC-CCC-cccccCCCCCCEEEccCCCCCCcc--hhhcCCCCCCEEeCcCCcCccccC--hh----hhc
Q 005634 196 RLINLQTLCLDGCG-LKD-IAIVGQLKKLEILSLRDSKIKQLP--LEIGQLTRLQLLDLSDCRSLVVIA--PN----VIS 265 (686)
Q Consensus 196 ~l~~Lr~L~L~~~~-l~~-~~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp--~~----~l~ 265 (686)
.++.|..|+|..|. +.. -.+..-+..|+.|||++|.+..++ .-++.++.|+.|+++.|. +.++. +. ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhc
Confidence 78999999999995 332 345556889999999999887776 458999999999999887 65542 21 024
Q ss_pred CCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecC
Q 005634 266 KFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRD 311 (686)
Q Consensus 266 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 311 (686)
.+++|+.|++..|.+. ....+..+..+++|+.|.+..+.
T Consensus 299 ~f~kL~~L~i~~N~I~-------~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR-------DWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccceeeecccCccc-------cccccchhhccchhhhhhccccc
Confidence 6789999999999863 22345566777777777766554
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=2.3e-07 Score=102.48 Aligned_cols=104 Identities=21% Similarity=0.376 Sum_probs=91.9
Q ss_pred CccEEEecCccCC-CCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeCc
Q 005634 176 ELKVLSLNRIHFS-SLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDLS 251 (686)
Q Consensus 176 ~Lr~L~l~~~~~~-~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~ 251 (686)
.++.|+|+++.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|++++|.++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 689999999999999999999875 778999999999999999998 799999999999999999
Q ss_pred CCcCccccChhhhcC-CCCCcEEEecCCcc
Q 005634 252 DCRSLVVIAPNVISK-FSRLKELYMGDSFS 280 (686)
Q Consensus 252 ~~~~l~~lp~~~l~~-l~~L~~L~l~~~~~ 280 (686)
+|...+.+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99866788887 655 45778888888754
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=2.8e-07 Score=101.94 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=87.0
Q ss_pred CCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEe
Q 005634 199 NLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275 (686)
Q Consensus 199 ~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 275 (686)
.++.|+|+++.+.. |..++++++|++|+|++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999876 789999999999999999998 89999999999999999999855678877 899999999999
Q ss_pred cCCccccccccCCCccchhhhCCC-CCccEEEEeecC
Q 005634 276 GDSFSQWDKVKGGRNASLAELKGL-SKLTTLEIQVRD 311 (686)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 311 (686)
++|.+. ...+..++.+ .++..+++.+|.
T Consensus 498 s~N~l~--------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS--------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc--------ccCChHHhhccccCceEEecCCc
Confidence 999875 2234444443 356678888765
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2e-07 Score=68.51 Aligned_cols=54 Identities=30% Similarity=0.434 Sum_probs=22.4
Q ss_pred ccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCC
Q 005634 177 LKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDS 230 (686)
Q Consensus 177 Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~ 230 (686)
|++|++++|.++.+|. .+.++++|++|++++|.++. +..+..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444332 23344444444444444333 233444444444444443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.7e-07 Score=68.95 Aligned_cols=57 Identities=32% Similarity=0.562 Sum_probs=30.0
Q ss_pred CCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCC
Q 005634 221 KLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDS 278 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 278 (686)
+|++|++++|+++.+|. .+..+++|++|++++|. ++.++++.+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555543 34555555555555544 55555544555555555555554
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=3.4e-09 Score=110.41 Aligned_cols=131 Identities=22% Similarity=0.221 Sum_probs=106.8
Q ss_pred CCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCC
Q 005634 174 TEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDC 253 (686)
Q Consensus 174 l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 253 (686)
...|.+.++++|.+..+-.++.-+++|+.|+|++|++++...+..|++|++|||++|.++.+|.--.--.+|+.|.+++|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 45688889999998888888889999999999999999977999999999999999999988752211234999999998
Q ss_pred cCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCc
Q 005634 254 RSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 254 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 314 (686)
. ++.+-. +.+|.+|+.||+++|-+. .-..+.-|..|..|+.|.+.+|.+-.
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7 888876 899999999999998764 22345556677788899999886543
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=1.3e-06 Score=88.26 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=69.4
Q ss_pred cCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecccccc
Q 005634 424 VFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNV 503 (686)
Q Consensus 424 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 503 (686)
.+++++.|++++| .++.++ .+| ++|++|.+.+|.+++.+|. .+ .++|++|.+.+|..+..++
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP--~LP-----~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sLP------ 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP--VLP-----NELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGLP------ 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC--CCC-----CCCcEEEccCCCCcccCCc--hh--hhhhhheEccCcccccccc------
Confidence 3577888888887 566665 222 4688888888888877763 12 3578888888887776554
Q ss_pred ccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCc
Q 005634 504 RFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSM 579 (686)
Q Consensus 504 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 579 (686)
++|+.|++... ....+.. -.++|+.|.+.++......+.+ ..-.++|++|.|++|..+
T Consensus 112 --------~sLe~L~L~~n-~~~~L~~-------LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 --------ESVRSLEIKGS-ATDSIKN-------VPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI 169 (426)
T ss_pred --------cccceEEeCCC-CCccccc-------CcchHhheeccccccccccccc--cccCCcccEEEecCCCcc
Confidence 35666666432 2222211 1246777777543322111000 011257888888887754
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=7.8e-08 Score=101.52 Aligned_cols=170 Identities=23% Similarity=0.256 Sum_probs=85.8
Q ss_pred CEEEEccCCCCCCCCC-cCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPK-RLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
+..+++..|.+..+-. ...++++..|++.+|. +..+... +..+.+|++|++++|.|+++. .+..++.|+.|++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~----i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNK----IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccc----hhhcccc-hhhhhcchheecccccccccc-chhhccchhhhee
Confidence 3333444444433222 2245566666666665 2222221 245666666666666666553 3455555666666
Q ss_pred cCCCCCCcccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
.+|.|.....+..++.|+.+++++|.++.+... ...+.+++.+.+.++. +..+.. +..+..+..+++..+.+.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~--- 221 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS--- 221 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce---
Confidence 666666655555566666666666666655433 3555666666666654 333322 233333333344444332
Q ss_pred ccCCCccchhhhCCCCC--ccEEEEeecCCCcC
Q 005634 285 VKGGRNASLAELKGLSK--LTTLEIQVRDAQIL 315 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 315 (686)
.+..+..+.. |+.+.+.++.+...
T Consensus 222 -------~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 -------KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred -------eccCcccchhHHHHHHhcccCccccc
Confidence 1222222222 56666666655544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=7.5e-08 Score=90.20 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=28.0
Q ss_pred CcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccce
Q 005634 451 QSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLE 494 (686)
Q Consensus 451 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 494 (686)
..+|+|.+|++++|..++. .....+-.++.|++|.++.|+.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCC
Confidence 3467777777777776665 233345567777777777777653
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=1e-07 Score=103.78 Aligned_cols=252 Identities=19% Similarity=0.169 Sum_probs=144.1
Q ss_pred hhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecC-CCceEeeccccccccccCCcccEeeccccccchhhccc
Q 005634 367 MLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLC-SEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDS 445 (686)
Q Consensus 367 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 445 (686)
...++++.+.+.+|....+.. -......+++|+.|++.++ ...... ..........+++|+.|++..+..+++....
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 346778888888877766521 0011456888999998873 222111 1111113455688899999888776655433
Q ss_pred CCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccc--
Q 005634 446 QLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELR-- 523 (686)
Q Consensus 446 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 523 (686)
.+ ...+++|+.|.+.+|..+++..-......+++|++|++++|..+.+.. .......+++|+.|.+..+.
T Consensus 263 ~l--~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~------l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 263 AL--ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG------LEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred HH--HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH------HHHHHHhCcchhhhhhhhcCCC
Confidence 32 234889999999889887766555567788999999999999884432 11223456766666655543
Q ss_pred -ccccccccCCCccccC-CCCeEEEEecCCCcccccchhHHHhhccCc-EEEEeeccCcc-eEecCCCCccCCCCccccc
Q 005634 524 -NIKKIWPDHNQGMYCC-QNLTTVIVDGCDHMKYLFSYSMVNSLLQLQ-YLEISYCSSME-GIVDTTGWSERDEGKFIEL 599 (686)
Q Consensus 524 -~l~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~-~L~i~~C~~l~-~l~~~~~~~~~~~~~l~~~ 599 (686)
.++....... .... ..+..+.+.+|++++++.. ...+ ..... .+.+.+|+.++ .+. .. .
T Consensus 335 ~~l~~~~l~~~--~~~~~d~~~~~~~~~~~~l~~~~l-~~~~-~~~~~~~~~l~gc~~l~~~l~---~~----------~ 397 (482)
T KOG1947|consen 335 PSLTDLSLSGL--LTLTSDDLAELILRSCPKLTDLSL-SYCG-ISDLGLELSLRGCPNLTESLE---LR----------L 397 (482)
T ss_pred ccHHHHHHHHh--hccCchhHhHHHHhcCCCcchhhh-hhhh-ccCcchHHHhcCCcccchHHH---HH----------h
Confidence 3433221111 0011 1455555555555555421 1122 22222 45566666662 110 00 0
Q ss_pred ccccccccccccccccccc--cccCCcccccccccCCCcceeeecCCCCceeecc
Q 005634 600 KVFPKLHSMRLQWLRKLTS--FANTGHIHSDLVVEFPSLLNLNIDGCSNMLRFIS 652 (686)
Q Consensus 600 ~~~p~L~~L~l~~c~~L~~--l~~~~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~ 652 (686)
..+..++.|.+..|...+. +.... ..+..++.+++.+|+.+..-..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~-------~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLA-------DSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ccCCccceEecccCccccccchHHHh-------hhhhccccCCccCcccccchhh
Confidence 1134478888888877653 22221 1267788888888888876543
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=3.5e-06 Score=85.31 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=93.4
Q ss_pred cCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccccccccccc
Q 005634 452 SFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPD 531 (686)
Q Consensus 452 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 531 (686)
.+++++.|++++| .++.+|. -.++|++|.+.+|..++.++ . .-.++|+.|++++|.++..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP---------~-~LP~nLe~L~Ls~Cs~L~sL--- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLP---------G-SIPEGLEKLTVCHCPEISGL--- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCC---------c-hhhhhhhheEccCccccccc---
Confidence 3688999999998 7888863 23479999999999988776 1 12368999999998777643
Q ss_pred CCCccccCCCCeEEEEec--CCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCcccccccc-cccccc
Q 005634 532 HNQGMYCCQNLTTVIVDG--CDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVF-PKLHSM 608 (686)
Q Consensus 532 ~~~~~~~l~~L~~L~i~~--C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~-p~L~~L 608 (686)
.++|+.|++.. |..+..+| ++|++|.+.++...... .... .+ ++|+.|
T Consensus 111 -------P~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~----~lp~----------~LPsSLk~L 161 (426)
T PRK15386 111 -------PESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQA----RIDN----------LISPSLKTL 161 (426)
T ss_pred -------ccccceEEeCCCCCcccccCc--------chHhheecccccccccc----cccc----------ccCCcccEE
Confidence 24677777764 33455542 35777777543311110 0000 12 578999
Q ss_pred cccccccccccccCCcccccccccCCCcceeeecCCCCc-eeeccccCCCCC
Q 005634 609 RLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNM-LRFISTSSPEDT 659 (686)
Q Consensus 609 ~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L-~~l~~~~~~~~~ 659 (686)
.+.+|..+. ++.. ...+|+.|+++.+..- ..++...+|+..
T Consensus 162 ~Is~c~~i~-LP~~---------LP~SLk~L~ls~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 162 SLTGCSNII-LPEK---------LPESLQSITLHIEQKTTWNISFEGFPDGL 203 (426)
T ss_pred EecCCCccc-Cccc---------ccccCcEEEecccccccccCccccccccc
Confidence 988888653 2210 1258899998775421 134444556544
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=5.5e-07 Score=99.10 Aligned_cols=105 Identities=20% Similarity=0.339 Sum_probs=62.3
Q ss_pred CCCCEEEEccCCCC--CCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCC
Q 005634 124 QKDPIAISLPRRDI--QELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLIN 199 (686)
Q Consensus 124 ~~~l~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~ 199 (686)
..++++|++++... ...+..+ -+|.|++|.+.+-.+ ...--..++.++++|+.||+++++++.+ .++++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~---~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF---DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee---cchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 45567777766543 2333222 467777777766542 1111223456677777777777777666 56677777
Q ss_pred CcEEEccCCCCCC---cccccCCCCCCEEEccCCCC
Q 005634 200 LQTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKI 232 (686)
Q Consensus 200 Lr~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i 232 (686)
|++|.+++-.+.. ...+.+|++|++||+|....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 7777776666544 35566677777777766533
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=5.6e-07 Score=86.61 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=119.8
Q ss_pred CCCCEEEEccCCCC--CCCCCc---C-CCCCcceEEcccCCCccccccc---------chhHhcCCCCccEEEecCccCC
Q 005634 124 QKDPIAISLPRRDI--QELPKR---L-QCPHLQLFLLITKGIAPVSMQI---------SDLFFEGTEELKVLSLNRIHFS 188 (686)
Q Consensus 124 ~~~l~~l~l~~~~~--~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~---------~~~~~~~l~~Lr~L~l~~~~~~ 188 (686)
..+++.++|+.|.+ ..++.. + ++..|+.|.+.+|.+++.-+.. -......-..||++...+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 34788888888877 233322 2 6888888888888855332222 1111245567888888888875
Q ss_pred C-----CchhhhcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccCCCCC-----CcchhhcCCCCCCEEeCcC
Q 005634 189 S-----LPSSLGRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRDSKIK-----QLPLEIGQLTRLQLLDLSD 252 (686)
Q Consensus 189 ~-----lp~~l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~ 252 (686)
. +...+...+.|+.+.+..|.|.. . ..+..+++|+.||++.|-++ .+-..+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 4 33456677888888888887654 1 45778888888888888766 3344566777888888888
Q ss_pred CcCccccC-----hhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 253 CRSLVVIA-----PNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 253 ~~~l~~lp-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
|. ++.-- ...-...++|++|.+.+|.+..+.. ......+...+.|+.|++++|..+
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA----LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHH----HHHHHHHhcchhhHHhcCCccccc
Confidence 86 43321 1112346788888888887652211 112233455778888888887653
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=3.2e-06 Score=56.73 Aligned_cols=39 Identities=36% Similarity=0.557 Sum_probs=21.4
Q ss_pred CCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccC
Q 005634 221 KLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIA 260 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 260 (686)
+|++|++++|+|+.+|..+++|++|++|++++|. +++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4556666666666665556666666666666654 44444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.2e-06 Score=56.11 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=18.5
Q ss_pred CccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC
Q 005634 176 ELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD 212 (686)
Q Consensus 176 ~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~ 212 (686)
+|++|++++|.++.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555555444
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=4.7e-07 Score=95.67 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=129.8
Q ss_pred cCCCCCEEEEccCCCCCCCCC-cCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCC
Q 005634 122 TIQKDPIAISLPRRDIQELPK-RLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINL 200 (686)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L 200 (686)
....++..+++.+|.+..+.. ...+++|++|++++|.+ ..+.. +..+..|+.|++++|.+..+. .+..++.|
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I----~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI----TKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSL 164 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccc----ccccc--hhhccchhhheeccCcchhcc-CCccchhh
Confidence 346789999999999988888 55799999999999983 34433 367888999999999998775 35669999
Q ss_pred cEEEccCCCCCCccc--ccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCC--CcEEEec
Q 005634 201 QTLCLDGCGLKDIAI--VGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSR--LKELYMG 276 (686)
Q Consensus 201 r~L~L~~~~l~~~~~--i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~--L~~L~l~ 276 (686)
+.+++++|.+...+. ...+..|+.+.+.+|.+..+ ..+..+.++..+++..+. +..+-. +..+.. |+.+++.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcc
Confidence 999999999888555 68999999999999988766 345555566666777765 554433 344444 8899998
Q ss_pred CCccccccccCCCccch-hhhCCCCCccEEEEeecCCC
Q 005634 277 DSFSQWDKVKGGRNASL-AELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 313 (686)
++.+. .. ..+..+.++..|++..+.+.
T Consensus 241 ~n~i~----------~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 241 GNRIS----------RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCccc----------cccccccccccccccchhhcccc
Confidence 88765 22 55667777777777766543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=5.4e-07 Score=84.57 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=48.2
Q ss_pred CCCCCEEEccCCCCCC---cchhhcCCCCCCEEeCcCCcC---ccccChhhhcCCCCCcEEEecCCccccccccCCCccc
Q 005634 219 LKKLEILSLRDSKIKQ---LPLEIGQLTRLQLLDLSDCRS---LVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNAS 292 (686)
Q Consensus 219 L~~L~~L~l~~~~i~~---lp~~i~~L~~L~~L~l~~~~~---l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 292 (686)
..+++.|||.+|.|+. +-.-+.+|+.|++|+++.|+. ++.+| ..+.+|++|.+.|+...|...
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~------- 138 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQS------- 138 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhh-------
Confidence 4556666666665552 223345666677777766551 12222 234577888887777765433
Q ss_pred hhhhCCCCCccEEEEeecC
Q 005634 293 LAELKGLSKLTTLEIQVRD 311 (686)
Q Consensus 293 ~~~l~~l~~L~~L~l~~~~ 311 (686)
-..+..++.++.|+++.|.
T Consensus 139 ~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhcchhhhhhhhccch
Confidence 3456677777777777663
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=5.5e-06 Score=91.37 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=69.9
Q ss_pred CCCccEEEecCccC--CCCchhhh-cCCCCcEEEccCCCCCC---cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCE
Q 005634 174 TEELKVLSLNRIHF--SSLPSSLG-RLINLQTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQL 247 (686)
Q Consensus 174 l~~Lr~L~l~~~~~--~~lp~~l~-~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 247 (686)
-.+|+.|+++|... ...|..++ .||.||.|.+++-.+.. .....++++|+.||+|+|+++.+ .++++|++||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 34566666666432 23444444 46666766666655333 13344566677777777766666 66677777777
Q ss_pred EeCcCCcCccccC-hhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecC
Q 005634 248 LDLSDCRSLVVIA-PNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRD 311 (686)
Q Consensus 248 L~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 311 (686)
|.+.+-. +..-. -..+.+|++|+.||++........ ......++--..|++||.|+.+++.
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcc
Confidence 7665533 22111 011566677777776654432100 0001112222346667777766544
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.90 E-value=6.5e-06 Score=79.43 Aligned_cols=163 Identities=22% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc--------------hhhhcCCCCcEEEccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP--------------SSLGRLINLQTLCLDGCGL 210 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--------------~~l~~l~~Lr~L~L~~~~l 210 (686)
.+++|++++|+.|-+++....-..++++++..|+.|.|.+|.+.... ..++.-+.||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 78899999999998654333333455678889999999999875211 1234567899999999987
Q ss_pred CC-c-----ccccCCCCCCEEEccCCCCC-----CcchhhcCCCCCCEEeCcCCcCccc-----cChhhhcCCCCCcEEE
Q 005634 211 KD-I-----AIVGQLKKLEILSLRDSKIK-----QLPLEIGQLTRLQLLDLSDCRSLVV-----IAPNVISKFSRLKELY 274 (686)
Q Consensus 211 ~~-~-----~~i~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~ 274 (686)
.+ + ..+...+.|+.+.++.|.|. -+-..+..+++|++||+.+|. ++. +... +..+++|++|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka-L~s~~~L~El~ 247 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA-LSSWPHLRELN 247 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH-hcccchheeec
Confidence 66 3 45667788999999888775 233457788999999999887 332 2222 56778899999
Q ss_pred ecCCccccccccCCCccchhhhC-CCCCccEEEEeecCCC
Q 005634 275 MGDSFSQWDKVKGGRNASLAELK-GLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 313 (686)
+++|.+... ...+....+. ..+.|+.|.+.+|.++
T Consensus 248 l~dcll~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 248 LGDCLLENE----GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccc----cHHHHHHHHhccCCCCceeccCcchhH
Confidence 998876511 1112222222 3567888888887654
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=1.2e-06 Score=95.36 Aligned_cols=227 Identities=18% Similarity=0.124 Sum_probs=119.9
Q ss_pred CCCCCCceEEeecCCCceEeeccccccccccCCcccEeecccc-ccchhhcccCCCCCCcCCCcCEEEEecCCCCccccC
Q 005634 394 EGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYL-NNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFS 472 (686)
Q Consensus 394 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 472 (686)
..++.|+.|.+.+|..+... .........++|+.|.+.++ ......+.....-...+++|+.|++..|..+++..-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDD---SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hhCchhhHhhhcccccCChh---hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 34788888888888655431 11113456778888888762 222221110000133467778888887776665533
Q ss_pred chhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCC-
Q 005634 473 FSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCD- 551 (686)
Q Consensus 473 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~- 551 (686)
......+++|++|.+.+|..+++.+ +......++.|++|+|++|..+++-..... ...+++|+.|.+.++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~g------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~--~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEG------LVSIAERCPSLRELDLSGCHGLTDSGLEAL--LKNCPNLRELKLLSLNG 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhH------HHHHHHhcCcccEEeeecCccchHHHHHHH--HHhCcchhhhhhhhcCC
Confidence 3333447778888877777755433 222345667777787777766533211111 2235665555544443
Q ss_pred --CcccccchhHHHhh-ccCcEEEEeeccCcceEecCCCCccCCCCcccccccccccc-cccccccccc-cccccCCccc
Q 005634 552 --HMKYLFSYSMVNSL-LQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLH-SMRLQWLRKL-TSFANTGHIH 626 (686)
Q Consensus 552 --~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~-~L~l~~c~~L-~~l~~~~~~~ 626 (686)
.++.+......... ..+..+.+.+|++++.+...... . .... .+.+.+|+.+ .++....
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~------------~~~~~~~~l~gc~~l~~~l~~~~--- 397 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I------------SDLGLELSLRGCPNLTESLELRL--- 397 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c------------cCcchHHHhcCCcccchHHHHHh---
Confidence 35544221111111 15666667777766655221111 0 1111 3445566666 2322222
Q ss_pred ccccccCCCcceeeecCCCCceeec
Q 005634 627 SDLVVEFPSLLNLNIDGCSNMLRFI 651 (686)
Q Consensus 627 ~~~~~~l~sL~~L~i~~C~~L~~l~ 651 (686)
..+.+++.|++..|...+.-.
T Consensus 398 ----~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 398 ----CRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred ----ccCCccceEecccCccccccc
Confidence 234448999999998876543
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=3.6e-07 Score=95.73 Aligned_cols=105 Identities=28% Similarity=0.303 Sum_probs=82.9
Q ss_pred hcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cc-cccCCCCCCEEEccCCCCCCcchhhcCCCCCCEE
Q 005634 171 FEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IA-IVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLL 248 (686)
Q Consensus 171 ~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~-~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 248 (686)
++-+..|+.|+|++|++++.- .+..|++|++|||+.|.+.. |. +...+. |+.|++++|.++++ .+|.+|.+|+.|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhcc
Confidence 466788999999999988764 68889999999999999887 42 223333 99999999999888 679999999999
Q ss_pred eCcCCcCcc---ccChhhhcCCCCCcEEEecCCccc
Q 005634 249 DLSDCRSLV---VIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 249 ~l~~~~~l~---~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
|+++|- +. ++.+ ++.|..|+.|++.||.+.
T Consensus 260 DlsyNl-l~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 260 DLSYNL-LSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhHhh-hhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 999875 33 3333 677888899999888653
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=2.5e-06 Score=70.83 Aligned_cols=90 Identities=23% Similarity=0.298 Sum_probs=53.6
Q ss_pred cCCCCccEEEecCccCCCCchhhh-cCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEe
Q 005634 172 EGTEELKVLSLNRIHFSSLPSSLG-RLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLD 249 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp~~l~-~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 249 (686)
.+..+|...++++|.++++|+.+. +++...+|++.+|.+.+ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344555566666666666666554 33356666666666666 5556666666666666666666666666666666666
Q ss_pred CcCCcCccccChh
Q 005634 250 LSDCRSLVVIAPN 262 (686)
Q Consensus 250 l~~~~~l~~lp~~ 262 (686)
..++. ...+|-+
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 65554 4445443
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=6.9e-06 Score=77.32 Aligned_cols=84 Identities=26% Similarity=0.297 Sum_probs=57.4
Q ss_pred hcCCCCccEEEecCccCCC---CchhhhcCCCCcEEEccCCCCCC-cccc-cCCCCCCEEEccCCCCC--CcchhhcCCC
Q 005634 171 FEGTEELKVLSLNRIHFSS---LPSSLGRLINLQTLCLDGCGLKD-IAIV-GQLKKLEILSLRDSKIK--QLPLEIGQLT 243 (686)
Q Consensus 171 ~~~l~~Lr~L~l~~~~~~~---lp~~l~~l~~Lr~L~L~~~~l~~-~~~i-~~L~~L~~L~l~~~~i~--~lp~~i~~L~ 243 (686)
-..+.+++.+||.+|.++. +-..+.++++|++|+++.|.+.. +... -.+.+|++|-|.++.+. .....+..++
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3566777778888877764 33345577888888888877666 4555 36677888888777554 5555667777
Q ss_pred CCCEEeCcCCc
Q 005634 244 RLQLLDLSDCR 254 (686)
Q Consensus 244 ~L~~L~l~~~~ 254 (686)
.++.|.++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777664
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=2.1e-06 Score=71.28 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=89.8
Q ss_pred CEEEEccCCCCCCCCCc----CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 127 PIAISLPRRDIQELPKR----LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
...++++.|.+..++.. ++..+|...++++|. ..++|+.+-.++..+..|++++|.++.+|..+..++.||.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch----hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 44556666665444432 266788888999987 6678888878888999999999999999999999999999
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchh
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLE 238 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~ 238 (686)
|+++.|.+.. |..|..|.+|-+|+..++.+.++|-.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999777 88888899999999999988888765
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00017 Score=64.52 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=37.9
Q ss_pred cCCCCccEEEecCccCCCCchhhh-cCCCCcEEEccCCCCCC---cccccCCCCCCEEEccCCCCCCcch----hhcCCC
Q 005634 172 EGTEELKVLSLNRIHFSSLPSSLG-RLINLQTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKIKQLPL----EIGQLT 243 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp~~l~-~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~ 243 (686)
..+.+|..|.+.+|.|+.+-..+. -+++|..|.|.+|.|.+ ...+..++.|++|.+-+|.++.-.. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 344445555555555444433333 23345555555554433 2344445555555555554443222 244555
Q ss_pred CCCEEeCcC
Q 005634 244 RLQLLDLSD 252 (686)
Q Consensus 244 ~L~~L~l~~ 252 (686)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 556665544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00024 Score=63.53 Aligned_cols=101 Identities=22% Similarity=0.336 Sum_probs=47.1
Q ss_pred CcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcC-CCCCCEEeCcCCcCccc---cChhhhcCCCCCcEEEe
Q 005634 200 LQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQ-LTRLQLLDLSDCRSLVV---IAPNVISKFSRLKELYM 275 (686)
Q Consensus 200 Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~---lp~~~l~~l~~L~~L~l 275 (686)
...+||++|.+.....+..++.|.+|.+.+|.|+.+-..+.. +++|+.|.+.+|. +.+ +.+ +..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceeee
Confidence 444555555544444455555555555555555544444433 2345555555543 222 222 345555555555
Q ss_pred cCCccccccccCCCccchhhhCCCCCccEEEEe
Q 005634 276 GDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQ 308 (686)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 308 (686)
-+|.+. .......--+.++++|+.|+..
T Consensus 121 l~Npv~-----~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVE-----HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchh-----cccCceeEEEEecCcceEeehh
Confidence 555433 1112222334455555555544
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.2e-05 Score=73.31 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcch--hhcCCCCCCEEeCc
Q 005634 174 TEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPL--EIGQLTRLQLLDLS 251 (686)
Q Consensus 174 l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~ 251 (686)
+.+.+.|++-||.+..+- ...+++.|++|.|+-|+|+....+..+++|++|.|+.|.|..+-+ .+.++++|++|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344455555555554331 123455555555555555555555555555555555555443321 23444455555444
Q ss_pred CCc
Q 005634 252 DCR 254 (686)
Q Consensus 252 ~~~ 254 (686)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00027 Score=66.08 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=36.0
Q ss_pred CCCCcEEEccCCCCCCcccccCCCCCCEEEccCC--CCC-CcchhhcCCCCCCEEeCcCCcC--ccccChhhhcCCCCCc
Q 005634 197 LINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDS--KIK-QLPLEIGQLTRLQLLDLSDCRS--LVVIAPNVISKFSRLK 271 (686)
Q Consensus 197 l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~--l~~lp~~~l~~l~~L~ 271 (686)
+..|+.|++.++.++....+-.|++|++|.++.| .+. .++....++++|++|++++|+. +..+++ +.++.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3344444444444444444444555555555555 332 3333333445555555555441 122222 34444555
Q ss_pred EEEecCCc
Q 005634 272 ELYMGDSF 279 (686)
Q Consensus 272 ~L~l~~~~ 279 (686)
.|++..|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 55555444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=7.5e-05 Score=69.88 Aligned_cols=105 Identities=30% Similarity=0.432 Sum_probs=63.9
Q ss_pred CCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccCh-hhhcCCCCCcEEEe
Q 005634 197 LINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAP-NVISKFSRLKELYM 275 (686)
Q Consensus 197 l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l 275 (686)
+.+.+.|+..||.+.++....+|+.|++|.|+-|+|+++ ..+..+++|+.|+|+.|. +..+.. .-+.++++|++|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 445566777777777766667777777777777777776 456777777777777665 555432 11456677777777
Q ss_pred cCCccccccccCCCccchhhhCCCCCccEEE
Q 005634 276 GDSFSQWDKVKGGRNASLAELKGLSKLTTLE 306 (686)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 306 (686)
..|.-... +.-.....-|.-|++|++|+
T Consensus 96 ~ENPCc~~---ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE---AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc---cchhHHHHHHHHcccchhcc
Confidence 66543311 01122233455566666654
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.0025 Score=59.80 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=20.5
Q ss_pred hhcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccCCCCC
Q 005634 194 LGRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRDSKIK 233 (686)
Q Consensus 194 l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~i~ 233 (686)
+-+|++|+..+|+.|.+.. | ..|++-..|.+|.+++|++.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3455666666666555332 2 23444455555555555444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.002 Score=35.78 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=10.2
Q ss_pred CCEEEccCCCCCCcchhhc
Q 005634 222 LEILSLRDSKIKQLPLEIG 240 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~~i~ 240 (686)
|++||+++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0052 Score=57.70 Aligned_cols=89 Identities=25% Similarity=0.282 Sum_probs=64.8
Q ss_pred cCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCC--cCccccChhhhcCCCCCcEEEecCCccccccccCCCccchh
Q 005634 217 GQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDC--RSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLA 294 (686)
Q Consensus 217 ~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 294 (686)
-.+..|+.|++.+..++++ ..+-.|++|+.|.++.| .....++.- +.++++|++|++++|.+. ....+.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~-------~lstl~ 110 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK-------DLSTLR 110 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc-------cccccc
Confidence 3456777777777777655 45667889999999988 444555554 566799999999999875 244566
Q ss_pred hhCCCCCccEEEEeecCCCc
Q 005634 295 ELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 295 ~l~~l~~L~~L~l~~~~~~~ 314 (686)
.+..+++|..|+++.|....
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 77778888888888776543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0022 Score=57.64 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=48.5
Q ss_pred cccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcc
Q 005634 507 LQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSME 580 (686)
Q Consensus 507 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 580 (686)
.+..+++++.|.+.+|..+.++.-.-.. .-.++|+.|+|++|+++++-. ..++..+++|+.|.|.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 3445666777777777777765443332 246788888888888888763 3566778888888887766543
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.60 E-value=0.018 Score=54.18 Aligned_cols=136 Identities=22% Similarity=0.236 Sum_probs=84.6
Q ss_pred CCCCccEEEecCccCC-----CCchhhhcCCCCcEEEccCCCC---CC--c-------ccccCCCCCCEEEccCCCCC-C
Q 005634 173 GTEELKVLSLNRIHFS-----SLPSSLGRLINLQTLCLDGCGL---KD--I-------AIVGQLKKLEILSLRDSKIK-Q 234 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~Lr~L~L~~~~l---~~--~-------~~i~~L~~L~~L~l~~~~i~-~ 234 (686)
.+..+..++||||.|. .+...+.+-.+|++.+++.-.. .+ + +.+-++++|+..+||.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4666777777777664 2444555666777777765431 11 1 34568899999999999665 4
Q ss_pred cch----hhcCCCCCCEEeCcCCcCccccChhhhc-------------CCCCCcEEEecCCccccccccCCCccchhhhC
Q 005634 235 LPL----EIGQLTRLQLLDLSDCRSLVVIAPNVIS-------------KFSRLKELYMGDSFSQWDKVKGGRNASLAELK 297 (686)
Q Consensus 235 lp~----~i~~L~~L~~L~l~~~~~l~~lp~~~l~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 297 (686)
.|. -|++-+.|.||.+++|. ++.+..+-|+ .-+.|++.....|.+.. +........+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen----gs~~~~a~~l~ 182 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN----GSKELSAALLE 182 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc----CcHHHHHHHHH
Confidence 443 46777899999999887 6655543333 34667777776665541 12222333455
Q ss_pred CCCCccEEEEeecCCC
Q 005634 298 GLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 298 ~l~~L~~L~l~~~~~~ 313 (686)
...+|+.+.+..|++.
T Consensus 183 sh~~lk~vki~qNgIr 198 (388)
T COG5238 183 SHENLKEVKIQQNGIR 198 (388)
T ss_pred hhcCceeEEeeecCcC
Confidence 5566777777766543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.59 E-value=0.039 Score=47.48 Aligned_cols=115 Identities=14% Similarity=0.296 Sum_probs=40.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
++++|+.+.+... ...++...|..+..|+.+.+.++ +..++. .+.++..|+.+.+.+ .+.. ...+..+.+
T Consensus 10 ~~~~l~~i~~~~~-----~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPNT-----IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECCC-----eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555555431 23455555556655666666553 443332 344555556655544 2222 234444555
Q ss_pred CCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCC
Q 005634 222 LEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRL 270 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L 270 (686)
|+.+++..+ ++.++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 555555443 3333322 3333 555555443 1444444434444433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0028 Score=57.03 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=42.5
Q ss_pred cccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccce
Q 005634 422 RKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLE 494 (686)
Q Consensus 422 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 494 (686)
...++.++.|.+.+|..+.+|+-+.+ .+-.|+|+.|+|++|+.+++-. ...+..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l--~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERL--GGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHh--cccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 44566677777777777777766554 2356777777777777766642 2234556666666665544443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0074 Score=33.47 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=13.3
Q ss_pred CccEEEecCccCCCCchhhhc
Q 005634 176 ELKVLSLNRIHFSSLPSSLGR 196 (686)
Q Consensus 176 ~Lr~L~l~~~~~~~lp~~l~~ 196 (686)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777766666665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.55 E-value=0.025 Score=28.99 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=6.0
Q ss_pred CCCEEEccCCCCCCcc
Q 005634 221 KLEILSLRDSKIKQLP 236 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp 236 (686)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.43 E-value=0.13 Score=44.10 Aligned_cols=106 Identities=16% Similarity=0.277 Sum_probs=62.6
Q ss_pred cchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcch-hhcC
Q 005634 166 ISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQ 241 (686)
Q Consensus 166 ~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~ 241 (686)
++...|.++.+|+.+.+.. .+..++. .+.++.+|+.+.+.++ +.. -..+..+.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5566678888999999885 4555544 4778888999998875 555 36677887899999865 5554544 3566
Q ss_pred CCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 242 LTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
+++|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888888653 667777667776 888887654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.78 E-value=0.079 Score=27.15 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=6.1
Q ss_pred CccEEEecCccCCCCc
Q 005634 176 ELKVLSLNRIHFSSLP 191 (686)
Q Consensus 176 ~Lr~L~l~~~~~~~lp 191 (686)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.19 E-value=0.21 Score=28.89 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=10.9
Q ss_pred CCCCEEEccCCCCCCcchh
Q 005634 220 KKLEILSLRDSKIKQLPLE 238 (686)
Q Consensus 220 ~~L~~L~l~~~~i~~lp~~ 238 (686)
.+|++|++++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.19 E-value=0.21 Score=28.89 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=10.9
Q ss_pred CCCCEEEccCCCCCCcchh
Q 005634 220 KKLEILSLRDSKIKQLPLE 238 (686)
Q Consensus 220 ~~L~~L~l~~~~i~~lp~~ 238 (686)
.+|++|++++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.00 E-value=0.0068 Score=55.62 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCC
Q 005634 175 EELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDS 230 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~ 230 (686)
..|..|+++.|.+..+|..++.+..++.+++..|..+. |.+++++++++++++.+|
T Consensus 65 t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 33334444444444444444443344444443333333 344444444444444333
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.67 E-value=0.0077 Score=55.30 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=50.0
Q ss_pred cCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeC
Q 005634 172 EGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL 250 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 250 (686)
...+..++||++.|....+-..++.+..|.-|+++.+.+.- |..++.+..++.+++..|..+..|.+.+++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45666667777666665555555555556666666555555 55566666666666666666666666666666666655
Q ss_pred cCCc
Q 005634 251 SDCR 254 (686)
Q Consensus 251 ~~~~ 254 (686)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.20 E-value=0.21 Score=28.92 Aligned_cols=17 Identities=35% Similarity=0.866 Sum_probs=14.6
Q ss_pred CCCcceeeecCCCCcee
Q 005634 633 FPSLLNLNIDGCSNMLR 649 (686)
Q Consensus 633 l~sL~~L~i~~C~~L~~ 649 (686)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57899999999998875
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.94 E-value=0.6 Score=26.92 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=16.9
Q ss_pred CCCCCEEeCcCCcCccccChhh
Q 005634 242 LTRLQLLDLSDCRSLVVIAPNV 263 (686)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~ 263 (686)
|++|++|++++|. ++.+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4678899998887 88888764
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.94 E-value=0.6 Score=26.92 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=16.9
Q ss_pred CCCCCEEeCcCCcCccccChhh
Q 005634 242 LTRLQLLDLSDCRSLVVIAPNV 263 (686)
Q Consensus 242 L~~L~~L~l~~~~~l~~lp~~~ 263 (686)
|++|++|++++|. ++.+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4678899998887 88888764
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.92 E-value=0.45 Score=27.50 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=12.1
Q ss_pred CCCCeEEEEecCCCcccc
Q 005634 539 CQNLTTVIVDGCDHMKYL 556 (686)
Q Consensus 539 l~~L~~L~i~~C~~L~~l 556 (686)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356777777777777664
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.96 E-value=0.03 Score=59.57 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=107.6
Q ss_pred CEEEEccCCCCCCCC-----CcC-CCCCcceEEcccCCCcccccccchhHhcCC-CCccEEEecCccCC-----CCchhh
Q 005634 127 PIAISLPRRDIQELP-----KRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGT-EELKVLSLNRIHFS-----SLPSSL 194 (686)
Q Consensus 127 l~~l~l~~~~~~~l~-----~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~~~-----~lp~~l 194 (686)
+.++.+.+|.+..-. ... ..+.|..|++.+|.++......-...+... ..+++|.+..|.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777763322 111 567788888888874321111111112232 55677777777764 256667
Q ss_pred hcCCCCcEEEccCCCCCC------ccccc----CCCCCCEEEccCCCCCC-----cchhhcCCCC-CCEEeCcCCcCccc
Q 005634 195 GRLINLQTLCLDGCGLKD------IAIVG----QLKKLEILSLRDSKIKQ-----LPLEIGQLTR-LQLLDLSDCRSLVV 258 (686)
Q Consensus 195 ~~l~~Lr~L~L~~~~l~~------~~~i~----~L~~L~~L~l~~~~i~~-----lp~~i~~L~~-L~~L~l~~~~~l~~ 258 (686)
....+++.++++.|.+.. +..+. ...++++|++.+|.++. +-..+...+. ++.|++..|. +.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 777888888888887532 12333 46788888888887762 1223444455 6667777766 332
Q ss_pred -----cChhhhcCC-CCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 259 -----IAPNVISKF-SRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 259 -----lp~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
+.+. +..+ ..+++++++.|.+... ........+..++.++.+.++.|...
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~----~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEK----GVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcccc----chHHHHHHHhhhHHHHHhhcccCccc
Confidence 2232 4455 6678888888876521 11233445666777888888776544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.07 E-value=1.7 Score=25.00 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=11.6
Q ss_pred CCCEEEccCCCCCCcch
Q 005634 221 KLEILSLRDSKIKQLPL 237 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp~ 237 (686)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776665
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.24 E-value=3.5 Score=23.86 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=8.8
Q ss_pred CCCCEEEccCCCCCC
Q 005634 220 KKLEILSLRDSKIKQ 234 (686)
Q Consensus 220 ~~L~~L~l~~~~i~~ 234 (686)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.94 E-value=3 Score=23.34 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=4.3
Q ss_pred CCCEEEccCCCC
Q 005634 221 KLEILSLRDSKI 232 (686)
Q Consensus 221 ~L~~L~l~~~~i 232 (686)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444433
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=52.89 E-value=0.52 Score=50.32 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=103.9
Q ss_pred CCCCEEEEccCCCCCCC-----CCcC-CC-CCcceEEcccCCCccccc-ccchhHhcCCCCccEEEecCccCCC-----C
Q 005634 124 QKDPIAISLPRRDIQEL-----PKRL-QC-PHLQLFLLITKGIAPVSM-QISDLFFEGTEELKVLSLNRIHFSS-----L 190 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l-----~~~~-~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~-----l 190 (686)
..++..+++.+|.+..- .... .. ..+++|.+..|....... .+... +....+++.++++.|.+.. +
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHHH
Confidence 45567788888877421 1112 22 567778887777442222 23333 4568999999999998742 3
Q ss_pred chhhh----cCCCCcEEEccCCCCCCc------ccccCCCC-CCEEEccCCCCC-----CcchhhcCC-CCCCEEeCcCC
Q 005634 191 PSSLG----RLINLQTLCLDGCGLKDI------AIVGQLKK-LEILSLRDSKIK-----QLPLEIGQL-TRLQLLDLSDC 253 (686)
Q Consensus 191 p~~l~----~l~~Lr~L~L~~~~l~~~------~~i~~L~~-L~~L~l~~~~i~-----~lp~~i~~L-~~L~~L~l~~~ 253 (686)
+..+. ...++++|++.+|.++.+ ..+..... ++.|++..|.+. .+...+..+ ..+++++++.|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 33344 578899999999997651 34556666 777999999776 344556666 78899999998
Q ss_pred cCccc----cChhhhcCCCCCcEEEecCCccc
Q 005634 254 RSLVV----IAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 254 ~~l~~----lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
..... +... +..+..+++|.++.+.+.
T Consensus 273 si~~~~~~~L~~~-l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 273 SITEKGVRDLAEV-LVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CccccchHHHHHH-HhhhHHHHHhhcccCccc
Confidence 83322 2222 556778999999888764
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.97 E-value=15 Score=21.58 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=8.3
Q ss_pred CCCCEEEccCCCCC
Q 005634 220 KKLEILSLRDSKIK 233 (686)
Q Consensus 220 ~~L~~L~l~~~~i~ 233 (686)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
Done!