Query 005634
Match_columns 686
No_of_seqs 471 out of 3740
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 6.2E-33 2.1E-37 309.3 33.3 464 113-646 21-557 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 6.8E-33 2.3E-37 309.0 29.5 486 127-670 13-558 (606)
3 3t6q_A CD180 antigen; protein- 100.0 7.4E-32 2.5E-36 300.6 31.5 481 114-646 23-559 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.3E-31 4.5E-36 305.4 27.6 448 145-654 198-724 (768)
5 2z81_A CD282 antigen, TOLL-lik 100.0 6E-31 2E-35 289.7 27.7 457 124-647 25-510 (549)
6 3rgz_A Protein brassinosteroid 100.0 2.8E-30 9.7E-35 294.3 33.9 423 122-577 97-549 (768)
7 3t6q_A CD180 antigen; protein- 100.0 8.7E-31 3E-35 292.0 28.6 407 128-577 15-460 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 1.5E-30 5.2E-35 288.0 29.4 439 113-615 17-530 (570)
9 2z63_A TOLL-like receptor 4, v 100.0 1.2E-30 4.1E-35 288.8 25.3 402 128-577 10-456 (570)
10 1ziw_A TOLL-like receptor 3; i 100.0 8.9E-30 3.1E-34 287.7 31.5 162 114-281 15-184 (680)
11 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-29 5.9E-34 285.4 33.2 142 123-269 47-196 (680)
12 3j0a_A TOLL-like receptor 5; m 100.0 8.1E-30 2.8E-34 293.6 30.5 478 112-657 13-526 (844)
13 4ecn_A Leucine-rich repeat pro 100.0 4.4E-29 1.5E-33 282.2 26.5 393 125-577 323-838 (876)
14 4eco_A Uncharacterized protein 100.0 5.1E-29 1.7E-33 277.4 24.6 395 125-577 81-598 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-28 8.3E-33 268.9 28.4 438 122-615 47-509 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-28 2.1E-32 263.6 29.2 451 128-646 3-480 (520)
17 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-27 1.6E-31 270.7 32.2 458 128-651 7-496 (844)
18 4eco_A Uncharacterized protein 100.0 1.8E-28 6.1E-33 273.0 18.6 429 147-647 81-600 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.8E-28 9.6E-33 275.7 20.0 431 147-647 323-840 (876)
20 1o6v_A Internalin A; bacterial 100.0 3.1E-27 1.1E-31 253.7 26.9 342 124-577 45-386 (466)
21 1o6v_A Internalin A; bacterial 100.0 4.4E-27 1.5E-31 252.6 25.4 321 145-577 44-364 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-26 4.9E-31 255.0 23.7 409 126-582 32-488 (562)
23 4g8a_A TOLL-like receptor 4; l 99.9 4.8E-26 1.6E-30 255.4 28.5 425 113-576 41-528 (635)
24 4fmz_A Internalin; leucine ric 99.9 1.9E-26 6.6E-31 238.0 22.8 147 145-311 42-188 (347)
25 2z7x_B TOLL-like receptor 1, v 99.9 6.2E-27 2.1E-31 255.7 20.0 438 115-614 12-479 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-26 2.5E-30 249.3 26.5 435 145-645 29-508 (562)
27 3v47_A TOLL-like receptor 5B a 99.9 7.1E-26 2.4E-30 243.0 23.3 380 129-577 14-406 (455)
28 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-24 4E-29 244.1 31.5 477 129-670 35-580 (635)
29 4fmz_A Internalin; leucine ric 99.9 1.1E-24 3.6E-29 224.9 26.8 173 123-315 42-214 (347)
30 1jl5_A Outer protein YOPM; leu 99.9 3.1E-25 1.1E-29 236.0 22.0 344 124-577 10-368 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-24 5.7E-29 230.5 26.9 166 124-315 41-206 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 5.8E-25 2E-29 235.9 23.0 376 150-614 13-406 (455)
33 3o6n_A APL1; leucine-rich repe 99.9 1.3E-24 4.3E-29 228.1 24.3 154 144-313 42-199 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 9.6E-24 3.3E-28 227.7 26.5 169 128-310 14-186 (477)
35 2id5_A Lingo-1, leucine rich r 99.9 1.1E-23 3.7E-28 227.3 25.7 152 150-317 14-169 (477)
36 3oja_B Anopheles plasmodium-re 99.9 8.3E-24 2.8E-28 234.1 24.1 304 144-522 48-355 (597)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-23 4.8E-28 223.4 24.1 305 145-575 40-348 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 1.1E-23 3.8E-28 220.8 22.9 134 173-315 43-180 (390)
39 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.3E-27 224.6 23.2 304 173-577 49-356 (597)
40 3ogk_B Coronatine-insensitive 99.9 3.3E-23 1.1E-27 230.2 12.6 381 145-577 110-524 (592)
41 1jl5_A Outer protein YOPM; leu 99.9 1.9E-21 6.6E-26 206.7 25.7 175 126-331 72-246 (454)
42 3ogk_B Coronatine-insensitive 99.9 4.9E-24 1.7E-28 236.8 5.8 434 145-644 71-548 (592)
43 4fcg_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 202.2 17.4 130 173-312 79-218 (328)
44 2p1m_B Transport inhibitor res 99.9 4.4E-23 1.5E-27 229.3 6.5 155 145-305 103-270 (594)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-21 5E-26 199.8 17.0 154 148-318 34-190 (332)
46 2p1m_B Transport inhibitor res 99.9 1.9E-23 6.6E-28 232.2 2.9 407 145-615 64-518 (594)
47 1xku_A Decorin; proteoglycan, 99.9 1.6E-20 5.3E-25 192.0 22.6 289 148-522 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-20 5.1E-25 192.3 22.0 125 175-313 33-160 (332)
49 1ogq_A PGIP-2, polygalacturona 99.8 4.9E-21 1.7E-25 193.7 15.0 174 125-312 50-233 (313)
50 4fcg_A Uncharacterized protein 99.8 5.7E-21 1.9E-25 194.4 14.1 193 124-331 80-286 (328)
51 2z80_A TOLL-like receptor 2, v 99.8 2.3E-20 7.8E-25 192.7 18.8 171 130-313 36-211 (353)
52 1xku_A Decorin; proteoglycan, 99.8 1.1E-19 3.7E-24 185.8 23.1 185 126-329 32-223 (330)
53 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-20 5.6E-25 189.9 14.4 248 147-527 50-306 (313)
54 2z80_A TOLL-like receptor 2, v 99.8 5.6E-20 1.9E-24 189.7 15.9 155 145-315 29-189 (353)
55 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-21 4.4E-26 210.3 3.4 158 147-312 3-182 (461)
56 3zyj_A Leucine-rich repeat-con 99.8 4E-19 1.4E-23 189.1 22.0 174 127-315 45-222 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 190.1 21.2 173 127-314 56-232 (452)
58 1z7x_W Ribonuclease inhibitor; 99.8 2.3E-21 8E-26 208.2 2.5 182 125-313 3-212 (461)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-19 4.7E-24 180.8 14.8 202 115-330 23-233 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-18 8.5E-23 188.3 24.7 157 126-317 41-198 (622)
61 2z66_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 180.1 15.8 173 129-314 11-189 (306)
62 1p9a_G Platelet glycoprotein I 99.8 3.7E-18 1.3E-22 170.2 18.9 193 123-330 8-203 (290)
63 3g06_A SSPH2 (leucine-rich rep 99.8 7.3E-18 2.5E-22 184.6 22.9 137 147-316 40-177 (622)
64 1h6u_A Internalin H; cell adhe 99.8 6.6E-18 2.3E-22 170.2 20.4 189 124-333 40-228 (308)
65 2o6q_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 167.0 19.3 191 126-330 17-213 (270)
66 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-18 2.3E-22 168.5 19.4 190 127-330 13-209 (285)
67 2z66_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 172.2 16.2 207 114-333 18-234 (306)
68 3zyj_A Leucine-rich repeat-con 99.8 6.4E-18 2.2E-22 179.8 18.6 205 113-333 53-266 (440)
69 3zyi_A Leucine-rich repeat-con 99.8 8.3E-18 2.8E-22 179.6 18.9 224 113-352 64-299 (452)
70 2o6q_A Variable lymphocyte rec 99.8 1.7E-17 5.9E-22 164.0 19.2 185 115-313 28-218 (270)
71 2z62_A TOLL-like receptor 4, v 99.8 8.6E-18 2.9E-22 166.9 16.2 195 123-331 26-233 (276)
72 3o53_A Protein LRIM1, AGAP0063 99.8 5.2E-19 1.8E-23 179.3 6.8 134 164-313 23-157 (317)
73 3o53_A Protein LRIM1, AGAP0063 99.7 3.1E-19 1.1E-23 181.0 4.0 143 125-280 34-181 (317)
74 1h6t_A Internalin B; cell adhe 99.7 3.5E-17 1.2E-21 163.3 17.4 171 124-315 45-215 (291)
75 1h6u_A Internalin H; cell adhe 99.7 7.8E-17 2.7E-21 162.3 19.8 179 118-317 56-234 (308)
76 2xwt_C Thyrotropin receptor; s 99.7 9.4E-18 3.2E-22 162.7 12.3 199 115-329 23-233 (239)
77 3m19_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 157.5 17.5 174 126-313 15-192 (251)
78 2z62_A TOLL-like receptor 4, v 99.7 9.4E-17 3.2E-21 159.4 17.7 188 130-329 12-207 (276)
79 3rfs_A Internalin B, repeat mo 99.7 1.4E-16 4.7E-21 157.6 18.6 174 124-312 40-217 (272)
80 1wwl_A Monocyte differentiatio 99.7 3.2E-18 1.1E-22 173.1 6.4 154 145-313 41-214 (312)
81 1p9a_G Platelet glycoprotein I 99.7 1E-16 3.5E-21 159.8 17.0 182 115-313 22-208 (290)
82 1wwl_A Monocyte differentiatio 99.7 6.8E-18 2.3E-22 170.7 8.5 193 127-331 65-283 (312)
83 3rfs_A Internalin B, repeat mo 99.7 3.7E-17 1.3E-21 161.7 13.6 181 118-318 56-241 (272)
84 1h6t_A Internalin B; cell adhe 99.7 2.4E-16 8.1E-21 157.3 17.1 182 131-333 30-211 (291)
85 2xwt_C Thyrotropin receptor; s 99.7 6E-17 2E-21 157.0 11.9 182 136-333 22-216 (239)
86 3m19_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 150.8 17.2 161 115-281 26-192 (251)
87 1m9s_A Internalin B; cell inva 99.7 3.2E-16 1.1E-20 171.4 15.6 173 123-316 41-213 (605)
88 3oja_A Leucine-rich immune mol 99.7 2.2E-16 7.5E-21 169.4 12.3 168 125-316 34-207 (487)
89 3oja_A Leucine-rich immune mol 99.7 4.2E-16 1.4E-20 167.3 13.4 166 148-332 35-201 (487)
90 2o6s_A Variable lymphocyte rec 99.7 7E-16 2.4E-20 145.9 13.1 170 128-318 10-184 (208)
91 4ezg_A Putative uncharacterize 99.6 9E-16 3.1E-20 143.7 13.3 145 125-279 44-192 (197)
92 3e6j_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 144.6 15.9 149 127-281 21-172 (229)
93 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.8E-20 149.8 13.4 169 126-316 20-188 (263)
94 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 156.6 11.3 193 125-330 91-302 (310)
95 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.7E-20 141.8 13.9 150 145-313 42-194 (197)
96 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 160.3 9.7 103 175-278 70-178 (336)
97 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.4E-20 166.0 15.4 185 128-333 24-208 (605)
98 2v9t_B SLIT homolog 2 protein 99.6 2.8E-15 9.7E-20 142.7 14.5 148 128-281 14-165 (220)
99 4glp_A Monocyte differentiatio 99.6 4E-16 1.4E-20 157.5 8.7 199 125-333 64-283 (310)
100 2v70_A SLIT-2, SLIT homolog 2 99.6 2.9E-15 9.9E-20 142.7 14.2 149 128-281 14-166 (220)
101 4ay9_X Follicle-stimulating ho 99.6 3.2E-15 1.1E-19 153.6 14.4 102 175-277 30-137 (350)
102 4ay9_X Follicle-stimulating ho 99.6 2.1E-14 7E-19 147.5 17.8 102 178-281 12-117 (350)
103 2ca6_A RAN GTPase-activating p 99.6 1.3E-15 4.3E-20 159.1 8.2 186 124-314 31-258 (386)
104 2ast_B S-phase kinase-associat 99.6 1.8E-15 6.1E-20 154.9 9.0 174 125-311 70-258 (336)
105 1xeu_A Internalin C; cellular 99.6 1E-14 3.5E-19 143.0 13.9 147 123-281 39-185 (263)
106 3cvr_A Invasion plasmid antige 99.6 2.4E-14 8.1E-19 154.8 16.9 171 126-331 60-239 (571)
107 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.6E-19 150.3 12.8 170 128-311 21-200 (361)
108 2v9t_B SLIT homolog 2 protein 99.6 2E-14 6.9E-19 136.8 13.3 147 150-312 14-164 (220)
109 2o6s_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 137.1 11.3 148 122-281 25-178 (208)
110 2ell_A Acidic leucine-rich nuc 99.6 2.3E-14 7.7E-19 130.4 12.3 138 173-317 22-164 (168)
111 2xot_A Amphoterin-induced prot 99.5 1.6E-14 5.5E-19 148.9 12.2 162 114-281 29-202 (361)
112 3e6j_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 135.2 14.5 148 149-313 21-172 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 6.6E-14 2.2E-18 133.2 14.5 147 150-312 14-165 (220)
114 3goz_A Leucine-rich repeat-con 99.5 1.8E-14 6.2E-19 148.7 10.1 80 175-254 80-178 (362)
115 2a5y_B CED-4; apoptosis; HET: 99.5 1.3E-15 4.5E-20 165.7 1.2 96 3-104 361-471 (549)
116 4b8c_D Glucose-repressible alc 99.5 2.2E-14 7.6E-19 161.0 10.9 156 124-281 172-329 (727)
117 2ell_A Acidic leucine-rich nuc 99.5 6.6E-14 2.2E-18 127.3 11.0 131 124-261 23-164 (168)
118 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.6E-18 147.2 15.8 157 124-313 79-243 (571)
119 2je0_A Acidic leucine-rich nuc 99.5 5.2E-14 1.8E-18 125.1 8.9 100 173-274 40-146 (149)
120 1dce_A Protein (RAB geranylger 99.5 4.2E-16 1.4E-20 169.5 -6.3 191 125-327 349-565 (567)
121 3goz_A Leucine-rich repeat-con 99.5 6.6E-14 2.3E-18 144.5 9.9 146 130-281 3-180 (362)
122 2ca6_A RAN GTPase-activating p 99.5 2.4E-14 8.2E-19 149.4 6.5 200 123-329 58-310 (386)
123 2je0_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 123.2 9.3 128 173-308 15-148 (149)
124 2wfh_A SLIT homolog 2 protein 99.5 4.1E-13 1.4E-17 124.7 12.8 124 150-281 13-139 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.4 7.3E-14 2.5E-18 128.0 6.2 128 145-279 17-151 (176)
126 1w8a_A SLIT protein; signaling 99.4 4.3E-13 1.5E-17 124.6 11.0 104 176-280 30-138 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 123.7 9.5 134 171-312 15-152 (176)
128 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.6E-17 122.0 11.1 125 178-313 11-139 (192)
129 4b8c_D Glucose-repressible alc 99.4 5.3E-13 1.8E-17 149.8 8.9 130 145-280 222-353 (727)
130 2wfh_A SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 118.2 12.7 124 178-312 13-138 (193)
131 1dce_A Protein (RAB geranylger 99.3 3.8E-12 1.3E-16 138.4 12.7 123 176-307 442-567 (567)
132 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 113.4 13.9 105 175-280 28-136 (177)
133 2o6r_A Variable lymphocyte rec 99.3 8.9E-12 3.1E-16 114.1 12.9 124 127-255 9-136 (177)
134 1ds9_A Outer arm dynein; leuci 99.3 3.6E-14 1.2E-18 132.8 -3.9 107 172-281 45-153 (198)
135 1ds9_A Outer arm dynein; leuci 99.3 2.1E-13 7.3E-18 127.5 -2.5 141 127-274 25-180 (198)
136 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 110.4 11.0 101 178-281 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.2 3.2E-11 1.1E-15 109.3 11.0 102 177-281 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 104.2 10.6 104 150-261 15-122 (174)
139 1vt4_I APAF-1 related killer D 99.1 2.7E-11 9.2E-16 134.5 5.4 84 3-98 353-437 (1221)
140 3sb4_A Hypothetical leucine ri 99.1 2.7E-10 9.1E-15 115.7 10.1 187 124-327 48-326 (329)
141 3g39_A Variable lymphocyte rec 99.1 8.7E-10 3E-14 99.8 11.5 98 150-254 12-113 (170)
142 3sfz_A APAF-1, apoptotic pepti 98.9 7.1E-10 2.4E-14 133.9 6.8 87 4-103 363-451 (1249)
143 3un9_A NLR family member X1; l 98.9 7E-10 2.4E-14 113.9 4.0 153 124-281 71-252 (372)
144 2ifg_A High affinity nerve gro 98.9 4.9E-09 1.7E-13 107.3 10.2 99 180-281 13-116 (347)
145 3sb4_A Hypothetical leucine ri 98.8 7.7E-09 2.6E-13 104.8 10.4 194 124-329 24-304 (329)
146 3un9_A NLR family member X1; l 98.8 4.1E-10 1.4E-14 115.7 0.4 163 146-314 71-253 (372)
147 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.2E-13 102.1 9.3 89 164-254 22-114 (347)
148 4fdw_A Leucine rich hypothetic 98.6 2.7E-06 9.3E-11 88.0 21.0 261 146-488 112-378 (401)
149 1z6t_A APAF-1, apoptotic prote 98.6 3.5E-08 1.2E-12 108.8 6.2 85 4-101 363-449 (591)
150 3e4g_A ATP synthase subunit S, 98.5 2.7E-08 9.3E-13 88.5 2.6 41 454-496 61-101 (176)
151 4fdw_A Leucine rich hypothetic 98.5 2.4E-06 8.1E-11 88.5 16.2 186 126-332 158-355 (401)
152 3e4g_A ATP synthase subunit S, 98.4 8.1E-08 2.8E-12 85.4 2.9 66 427-497 62-131 (176)
153 4fs7_A Uncharacterized protein 98.4 6.3E-06 2.2E-10 85.5 17.4 122 145-277 69-194 (394)
154 4fs7_A Uncharacterized protein 98.4 9.4E-06 3.2E-10 84.2 17.3 131 163-308 59-193 (394)
155 2ra8_A Uncharacterized protein 98.3 6.8E-07 2.3E-11 90.8 6.3 181 124-312 106-319 (362)
156 1io0_A Tropomodulin; LRR prote 98.2 1.7E-06 5.8E-11 79.1 6.4 108 171-280 32-163 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 1.3E-06 4.4E-11 79.9 5.5 110 145-254 34-162 (185)
158 2ra8_A Uncharacterized protein 98.0 3.9E-06 1.3E-10 85.2 6.0 150 123-281 137-320 (362)
159 3rw6_A Nuclear RNA export fact 97.9 1.3E-05 4.5E-10 77.0 6.2 79 195-274 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.9 4.4E-06 1.5E-10 80.3 2.7 78 172-249 167-257 (267)
161 4gt6_A Cell surface protein; l 97.8 0.0028 9.6E-08 65.4 22.9 314 148-548 65-386 (394)
162 4gt6_A Cell surface protein; l 97.6 0.0091 3.1E-07 61.5 22.7 112 163-278 51-170 (394)
163 4h09_A Hypothetical leucine ri 95.7 0.029 1E-06 57.3 9.4 102 171-276 213-318 (379)
164 3rfe_A Platelet glycoprotein I 95.7 0.014 5E-07 49.0 5.8 54 224-280 12-67 (130)
165 4h09_A Hypothetical leucine ri 95.4 0.064 2.2E-06 54.7 10.6 125 145-278 215-343 (379)
166 1pgv_A TMD-1, tropomodulin TMD 95.3 0.027 9.2E-07 50.9 6.4 106 173-279 39-168 (197)
167 1pgv_A TMD-1, tropomodulin TMD 95.3 0.024 8.2E-07 51.2 5.8 58 172-229 67-135 (197)
168 3rfe_A Platelet glycoprotein I 94.6 0.046 1.6E-06 45.9 5.5 50 179-230 12-65 (130)
169 2lz0_A Uncharacterized protein 22.6 69 0.0024 24.7 3.4 37 239-277 16-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.2e-33 Score=309.30 Aligned_cols=464 Identities=18% Similarity=0.155 Sum_probs=274.2
Q ss_pred CchhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 113 ADVKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 113 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
.....+|. ...+++++|++++|.+..++.. + ++++|++|++++|. ...+++..|.++++|++|++++|.++.+
T Consensus 21 ~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 21 QKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp SCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcCEeECCCCccccc
Confidence 34455554 3468899999999999877763 3 89999999999998 4456565669999999999999999877
Q ss_pred -chhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCC--CcchhhcCCCCCCEEeCcCCcCccccChhhhc
Q 005634 191 -PSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVIS 265 (686)
Q Consensus 191 -p~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 265 (686)
|..++++++|++|++++|.++. + ..++++++|++|++++|.++ .+|..++++++|++|++++|. +..++...++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 174 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ 174 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhh
Confidence 7889999999999999999887 4 78999999999999999998 589999999999999999997 7777655466
Q ss_pred CCCCCc----EEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC--cCCCcc--------------------
Q 005634 266 KFSRLK----ELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ--ILPQDL-------------------- 319 (686)
Q Consensus 266 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-------------------- 319 (686)
.+++|+ +|++++|.+... ........+|+.|++++|... ..+..+
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~---------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFI---------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEE---------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred hhhccccccceeeccCCCccee---------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 666554 788888876511 111222225666666555432 011111
Q ss_pred -------------------------------------cccCccEEEEEecCcCCcc-ccCCCCccEEEEcCccCccchhh
Q 005634 320 -------------------------------------VFVELQRYRICIGEALGVQ-RVDSETSRLVELCGLANVSSLLE 361 (686)
Q Consensus 320 -------------------------------------~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~ 361 (686)
.+.+|+.+.+..+...... .....+++.+.+.++.- ..++
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-
Confidence 2333444444333211111 12233444555544321 1111
Q ss_pred hhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchh
Q 005634 362 NYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLET 441 (686)
Q Consensus 362 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 441 (686)
.+ .+++|+.|.+.++...... . ...+++|+.|+++++. +..+.. .......+++|++|+++++. ++.
T Consensus 324 --~~--~l~~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~ls~n~-l~~~~~--~~~~~~~~~~L~~L~L~~n~-l~~ 390 (606)
T 3vq2_A 324 --TL--DLPFLKSLTLTMNKGSISF----K-KVALPSLSYLDLSRNA-LSFSGC--CSYSDLGTNSLRHLDLSFNG-AII 390 (606)
T ss_dssp --CC--CCSSCCEEEEESCSSCEEC----C-CCCCTTCCEEECCSSC-EEEEEE--CCHHHHCCSCCCEEECCSCS-EEE
T ss_pred --cC--CCCccceeeccCCcCccch----h-hccCCCCCEEECcCCc-cCCCcc--hhhhhccCCcccEeECCCCc-ccc
Confidence 11 3445555555544332211 1 3455555555555542 211100 00123345666666666543 333
Q ss_pred hcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccc
Q 005634 442 ICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRE 521 (686)
Q Consensus 442 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 521 (686)
++.. ...+++|++|++++|. +...++...+..+++|++|++++|......+ .....+++|++|++++
T Consensus 391 ~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 391 MSAN----FMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--------GIFLGLTSLNTLKMAG 457 (606)
T ss_dssp ECCC----CTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTT
T ss_pred chhh----ccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccch--------hhhcCCCCCCEEECCC
Confidence 3311 4456666666666643 3443333345566666666666655333222 2345566777777776
Q ss_pred cccccc-ccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCcccccc
Q 005634 522 LRNIKK-IWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELK 600 (686)
Q Consensus 522 ~~~l~~-~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~ 600 (686)
+ .++. +.... ...+++|++|++++| +++.+++ ..+..+++|++|++++|. ++.+.. .. +.
T Consensus 458 n-~l~~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~-----------~~ 518 (606)
T 3vq2_A 458 N-SFKDNTLSNV---FANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS-SH-----------YN 518 (606)
T ss_dssp C-EEGGGEECSC---CTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG-GG-----------TT
T ss_pred C-cCCCcchHHh---hccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH-HH-----------cc
Confidence 6 3332 11111 235667777777776 4555433 345566777777777663 433321 11 11
Q ss_pred cccccccccccccccccccccCCcccccccccCC-CcceeeecCCCC
Q 005634 601 VFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFP-SLLNLNIDGCSN 646 (686)
Q Consensus 601 ~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~-sL~~L~i~~C~~ 646 (686)
.+++|+.|++.++. +++++..- ..++ +|+.|+++++|-
T Consensus 519 ~l~~L~~L~l~~N~-l~~~p~~~-------~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR-IETSKGIL-------QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCTTCCEEECTTSC-CCCEESCG-------GGSCTTCCEEECCSCCC
T ss_pred CCCcCCEEECCCCc-CcccCHhH-------hhhcccCcEEEccCCCc
Confidence 25666666666653 55554432 3554 477777766553
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.8e-33 Score=308.98 Aligned_cols=486 Identities=13% Similarity=0.134 Sum_probs=303.3
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L 205 (686)
-+.++.+++.+..+|..+ .+++++|++++|. ...++...|+++++|++|++++|.++.+ |..++++++||+|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNP----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCC----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 347888899999998765 3899999999998 4566666679999999999999999876 567999999999999
Q ss_pred cCCCCCC--cccccCCCCCCEEEccCCCCCCcc-hhhcCCCCCCEEeCcCCcCcc--ccChhhhcCCCCCcEEEecCCcc
Q 005634 206 DGCGLKD--IAIVGQLKKLEILSLRDSKIKQLP-LEIGQLTRLQLLDLSDCRSLV--VIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 206 ~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
++|.++. |..++++++|++|++++|.++.+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcc
Confidence 9999887 688999999999999999999877 679999999999999998 65 46776 99999999999999987
Q ss_pred ccccccCCCccchhhhCCCCC-ccEEEEeecCCCcCCCcc-cccCccEEEEEecCcCC----ccccCCCCccE-------
Q 005634 281 QWDKVKGGRNASLAELKGLSK-LTTLEIQVRDAQILPQDL-VFVELQRYRICIGEALG----VQRVDSETSRL------- 347 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~----~~~~~~~~l~~------- 347 (686)
.. .....+..+.+++. +..|++++|.+..++... ...+|+.+++..+.... ........++.
T Consensus 166 ~~-----~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 166 QT-----ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp CE-----ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ee-----cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 62 11234455555554 668999999988887766 55589999887653210 00111222222
Q ss_pred -------------------------EEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceE
Q 005634 348 -------------------------VELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHL 402 (686)
Q Consensus 348 -------------------------l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L 402 (686)
+.+.... .+.........+++|+.|.+.++.. ..+ +.+..+++|++|
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~-~~l----~~l~~~~~L~~L 312 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN---DFSDDIVKFHCLANVSAMSLAGVSI-KYL----EDVPKHFKWQSL 312 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT---TCCGGGGSCGGGTTCSEEEEESCCC-CCC----CCCCTTCCCSEE
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccc---cccccccccccCCCCCEEEecCccc-hhh----hhccccccCCEE
Confidence 2221111 1111111134567788888877653 222 235677788888
Q ss_pred EeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCcccc-CchhhhhcCC
Q 005634 403 QVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLF-SFSIAKNLLR 481 (686)
Q Consensus 403 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~l~~ 481 (686)
++.+|.- ..++ .. .+++|++|+++++..+..+ + ...+++|++|+++++. ++..+ ....+..+++
T Consensus 313 ~l~~n~l-~~lp------~~-~l~~L~~L~l~~n~~~~~~-----~-~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 313 SIIRCQL-KQFP------TL-DLPFLKSLTLTMNKGSISF-----K-KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNS 377 (606)
T ss_dssp EEESCCC-SSCC------CC-CCSSCCEEEEESCSSCEEC-----C-CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSC
T ss_pred EcccccC-cccc------cC-CCCccceeeccCCcCccch-----h-hccCCCCCEEECcCCc-cCCCcchhhhhccCCc
Confidence 8887753 3322 12 6777777777776544433 1 4467777777777753 44432 1124566777
Q ss_pred ccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhH
Q 005634 482 LQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSM 561 (686)
Q Consensus 482 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 561 (686)
|++|++++|. +..++ .....+++|+.|+++++ .+..+.... ....+++|+.|++++|. ++...+ ..
T Consensus 378 L~~L~L~~n~-l~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~-~~ 443 (606)
T 3vq2_A 378 LRHLDLSFNG-AIIMS--------ANFMGLEELQHLDFQHS-TLKRVTEFS--AFLSLEKLLYLDISYTN-TKIDFD-GI 443 (606)
T ss_dssp CCEEECCSCS-EEEEC--------CCCTTCTTCCEEECTTS-EEESTTTTT--TTTTCTTCCEEECTTSC-CEECCT-TT
T ss_pred ccEeECCCCc-cccch--------hhccCCCCCCeeECCCC-ccCCccChh--hhhccccCCEEECcCCC-CCccch-hh
Confidence 7777777665 33333 13344555555555555 333221100 12234555555555543 222211 22
Q ss_pred HHhhccCcEEEEeeccCcceEecCCCCccC--------CCCcc-----cccccccccccccccccccccccccCCccccc
Q 005634 562 VNSLLQLQYLEISYCSSMEGIVDTTGWSER--------DEGKF-----IELKVFPKLHSMRLQWLRKLTSFANTGHIHSD 628 (686)
Q Consensus 562 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~--------~~~~l-----~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~ 628 (686)
+..+++|++|++++|.--..+. +...... +...+ ..+..+++|+.|.+.++ +++++. +.
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~------~~ 515 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLD------SS 515 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEE------GG
T ss_pred hcCCCCCCEEECCCCcCCCcch-HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcC------HH
Confidence 3444555555554443111010 1100000 00000 01122567777776666 344432 12
Q ss_pred ccccCCCcceeeecCCCCceeeccc--cCCCCCCCCCCCCCccc
Q 005634 629 LVVEFPSLLNLNIDGCSNMLRFIST--SSPEDTNHSEMQPPPLF 670 (686)
Q Consensus 629 ~~~~l~sL~~L~i~~C~~L~~l~~~--~~~~~~~~~~~~~~~~~ 670 (686)
.+..+++|++|++++|. ++.+|.. .+|......++...|+.
T Consensus 516 ~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 23578999999999996 7788875 55555555566555544
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-32 Score=300.59 Aligned_cols=481 Identities=14% Similarity=0.103 Sum_probs=309.2
Q ss_pred chhhhhcccCCCCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-
Q 005634 114 DVKKKMEETIQKDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL- 190 (686)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l- 190 (686)
....+|. .....+++|++++|.+..+++ .+ ++++|++|++++|. ...+++..|+++++|++|++++|.+..+
T Consensus 23 ~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 23 GLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ----IYWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc----cceeChhhccCccccCeeeCCCCcccccC
Confidence 3444453 356789999999999987754 33 89999999999998 3345555568999999999999999865
Q ss_pred chhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcc-hhhcCCCCCCEEeCcCCcCccccChhhhcCC
Q 005634 191 PSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLP-LEIGQLTRLQLLDLSDCRSLVVIAPNVISKF 267 (686)
Q Consensus 191 p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 267 (686)
|..++++++|++|++++|.++. +..++++++|++|++++|.++.++ ..+..+++|++|++++|. +..+++..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 7789999999999999999888 588999999999999999998762 334459999999999998 788876668999
Q ss_pred CCCc--EEEecCCccccccccCCC--------------------------------------------ccchhhhCCCCC
Q 005634 268 SRLK--ELYMGDSFSQWDKVKGGR--------------------------------------------NASLAELKGLSK 301 (686)
Q Consensus 268 ~~L~--~L~l~~~~~~~~~~~~~~--------------------------------------------~~~~~~l~~l~~ 301 (686)
++|+ +|++++|.+....+..-. ...+..+..+ +
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~ 255 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-E
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-c
Confidence 9999 899998876532211000 0000111111 5
Q ss_pred ccEEEEeecCCCcCCCcc--cccCccEEEEEecCcCCcc--ccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEE
Q 005634 302 LTTLEIQVRDAQILPQDL--VFVELQRYRICIGEALGVQ--RVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINL 377 (686)
Q Consensus 302 L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 377 (686)
|+.|+++.+.+..++... .+++|+.|++..+...... ....++++.+.+.+..- ..+ .......+++|+.|.+
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENL--CQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBG--GGGCGGGCTTCSEEEC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcC--chhhhhccCcCCEEEC
Confidence 667777777766666543 6677777777655432221 23456777777775421 111 1223345677888888
Q ss_pred ccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcC
Q 005634 378 DELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLR 457 (686)
Q Consensus 378 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 457 (686)
.++.....+... .++.+++|++|+++++.-. .+.. .......+++|++|+++++. +..+.... ...+++|+
T Consensus 333 ~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~ 403 (606)
T 3t6q_A 333 KGNTKRLELGTG--CLENLENLRELDLSHDDIE-TSDC--CNLQLRNLSHLQSLNLSYNE-PLSLKTEA---FKECPQLE 403 (606)
T ss_dssp CSCSSCCBCCSS--TTTTCTTCCEEECCSSCCC-EEEE--STTTTTTCTTCCEEECCSCS-CEEECTTT---TTTCTTCS
T ss_pred CCCCcccccchh--hhhccCcCCEEECCCCccc-cccC--cchhcccCCCCCEEECCCCc-CCcCCHHH---hcCCccCC
Confidence 776543222111 1456788888888776432 2210 01134567788888887754 33332221 45678888
Q ss_pred EEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccc
Q 005634 458 IIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMY 537 (686)
Q Consensus 458 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 537 (686)
+|++++|. ++...+...+..+++|++|++++|.--...+ .....+++|++|+++++ .++...........
T Consensus 404 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 404 LLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--------QLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQ 473 (606)
T ss_dssp EEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCT--------TTTTTCTTCCEEECTTC-BCGGGEECSSCGGG
T ss_pred eEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCH--------HHHhCCCCCCEEECCCC-CCCccccccchhhc
Confidence 88888754 4444333346678888888887765322222 24456788888888887 44432111112245
Q ss_pred cCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccccccccccccccccccccccc
Q 005634 538 CCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLT 617 (686)
Q Consensus 538 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~ 617 (686)
.+++|+.|++++| +++.+++ ..+..+++|++|+++++. ++.+. ++. +..+++| .|++.++ +++
T Consensus 474 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-~~~-----------l~~l~~L-~L~L~~N-~l~ 536 (606)
T 3t6q_A 474 TLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSS-IEA-----------LSHLKGI-YLNLASN-HIS 536 (606)
T ss_dssp GCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGG-GGG-----------GTTCCSC-EEECCSS-CCC
T ss_pred cCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCC-hhH-----------hCccccc-EEECcCC-ccc
Confidence 6788888888887 5666643 345678888888888764 33221 111 1113455 5554444 234
Q ss_pred ccccCCcccccccccCCCcceeeecCCCC
Q 005634 618 SFANTGHIHSDLVVEFPSLLNLNIDGCSN 646 (686)
Q Consensus 618 ~l~~~~~~~~~~~~~l~sL~~L~i~~C~~ 646 (686)
+++. +.+..+++|+.|+++++|-
T Consensus 537 ~~~~------~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 537 IILP------SLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCG------GGHHHHHTSSEEECTTCCE
T ss_pred ccCH------hhcccCCCCCEEeCCCCCc
Confidence 3322 2235678889999988773
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-31 Score=305.36 Aligned_cols=448 Identities=15% Similarity=0.074 Sum_probs=269.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-CCchhhhcCCCCcEEEccCCCCCC-cccccCCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-SLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKL 222 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L 222 (686)
.+++|++|++++|. ....+|. ++++++|++|++++|.++ .+|..++++++|++|++++|.+.. ++.. .+++|
T Consensus 198 ~l~~L~~L~Ls~n~---l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 198 RCVNLEFLDVSSNN---FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp TCTTCCEEECCSSC---CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred cCCcCCEEECcCCc---CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCC
Confidence 45555555555555 2223333 355666666666666554 345555666666666666665544 2222 55666
Q ss_pred CEEEccCCCCC-CcchhhcCC-CCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchh-hhCCC
Q 005634 223 EILSLRDSKIK-QLPLEIGQL-TRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLA-ELKGL 299 (686)
Q Consensus 223 ~~L~l~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l 299 (686)
++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+. ...+. .++++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~--------~~ip~~~l~~l 342 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS--------GELPMDTLLKM 342 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE--------EECCHHHHTTC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc--------CcCCHHHHhcC
Confidence 66666666555 566666554 67777777777633345554 677777777777777653 11222 37777
Q ss_pred CCccEEEEeecCCC-cCCCcc-ccc-CccEEEEEecCcC----Cc-cccCCCCccEEEEcCccCccchhhhhhHhhhhcc
Q 005634 300 SKLTTLEIQVRDAQ-ILPQDL-VFV-ELQRYRICIGEAL----GV-QRVDSETSRLVELCGLANVSSLLENYGMKMLLKK 371 (686)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~-~l~-~L~~L~l~~~~~~----~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 371 (686)
++|+.|++++|.+. .+|..+ .+. +|+.|++..+... .+ ......+++.+.+.++.-.. ........+++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~l~~l~~ 419 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG---KIPPTLSNCSE 419 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE---ECCGGGGGCTT
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc---ccCHHHhcCCC
Confidence 78888888877754 566665 454 7777777554321 11 01124567888877553111 12222345678
Q ss_pred ccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCC
Q 005634 372 TEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQ 451 (686)
Q Consensus 372 L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 451 (686)
|+.|++.++.-....... ++.+++|+.|++.++.-...++. ....+++|++|+++++.--..++.. .+
T Consensus 420 L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~L~~N~l~~~~p~~----l~ 487 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSS---LGSLSKLRDLKLWLNMLEGEIPQ-----ELMYVKTLETLILDFNDLTGEIPSG----LS 487 (768)
T ss_dssp CCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSCCCSCCCGG----GG
T ss_pred CCEEECcCCcccCcccHH---HhcCCCCCEEECCCCcccCcCCH-----HHcCCCCceEEEecCCcccCcCCHH----Hh
Confidence 888888876433222222 45778888888887753222211 3456788889988886532223222 55
Q ss_pred cCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccccccccccc
Q 005634 452 SFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPD 531 (686)
Q Consensus 452 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 531 (686)
.+++|++|++++|.-...+|. .+..+++|++|++++|.-...++ .....+++|+.|++++++-...++..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIP--------AELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECC--------GGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCC--------HHHcCCCCCCEEECCCCccCCcCChH
Confidence 688899999988763334443 57788899999998887655555 35667888999998887422122111
Q ss_pred C------------------------------------------------------------------CCccccCCCCeEE
Q 005634 532 H------------------------------------------------------------------NQGMYCCQNLTTV 545 (686)
Q Consensus 532 ~------------------------------------------------------------------~~~~~~l~~L~~L 545 (686)
. +.....+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 0 0012346789999
Q ss_pred EEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcc
Q 005634 546 IVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHI 625 (686)
Q Consensus 546 ~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~ 625 (686)
+++++. ++... +..++.+++|+.|+++++.--..+ |+. +..+++|+.|++.++.--..+|..
T Consensus 638 dLs~N~-l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~i--p~~-----------l~~L~~L~~LdLs~N~l~g~ip~~--- 699 (768)
T 3rgz_A 638 DMSYNM-LSGYI-PKEIGSMPYLFILNLGHNDISGSI--PDE-----------VGDLRGLNILDLSSNKLDGRIPQA--- 699 (768)
T ss_dssp ECCSSC-CBSCC-CGGGGGCTTCCEEECCSSCCCSCC--CGG-----------GGGCTTCCEEECCSSCCEECCCGG---
T ss_pred ECcCCc-ccccC-CHHHhccccCCEEeCcCCccCCCC--ChH-----------HhCCCCCCEEECCCCcccCcCChH---
Confidence 999984 55332 345788999999999987532222 221 223678888887765432234332
Q ss_pred cccccccCCCcceeeecCCCCceeecccc
Q 005634 626 HSDLVVEFPSLLNLNIDGCSNMLRFISTS 654 (686)
Q Consensus 626 ~~~~~~~l~sL~~L~i~~C~~L~~l~~~~ 654 (686)
+..+++|++|++++++---.+|..+
T Consensus 700 ----l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 700 ----MSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp ----GGGCCCCSEEECCSSEEEEECCSSS
T ss_pred ----HhCCCCCCEEECcCCcccccCCCch
Confidence 2588999999999987666666553
No 5
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=6e-31 Score=289.72 Aligned_cols=457 Identities=18% Similarity=0.162 Sum_probs=261.9
Q ss_pred CCCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCC
Q 005634 124 QKDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINL 200 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L 200 (686)
..++++|++++|.+..+++ .+ ++++|++|++++|. ...+++..|.++++|++|++++|.+..+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 3566777777776655532 22 66677777777666 2334444446667777777777766655543 6667777
Q ss_pred cEEEccCCCCCC---cccccCCCCCCEEEccCCC-CCCcc-hhhcCCCCCCEEeCcCCcCccc-cChhhhcCCCCCcEEE
Q 005634 201 QTLCLDGCGLKD---IAIVGQLKKLEILSLRDSK-IKQLP-LEIGQLTRLQLLDLSDCRSLVV-IAPNVISKFSRLKELY 274 (686)
Q Consensus 201 r~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~-i~~lp-~~i~~L~~L~~L~l~~~~~l~~-lp~~~l~~l~~L~~L~ 274 (686)
++|++++|.++. |..++++++|++|++++|. +..+| ..++++++|++|++++|. +.. .|.. ++++++|++|+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhh-hhccccCceEe
Confidence 777777776553 3556667777777776665 55554 356666777777776666 333 3443 66666777777
Q ss_pred ecCCccccccccCCCccchh-hhCCCCCccEEEEeecCCCcCC---Ccc--cccCccEEEEEecCcCCc-------cccC
Q 005634 275 MGDSFSQWDKVKGGRNASLA-ELKGLSKLTTLEIQVRDAQILP---QDL--VFVELQRYRICIGEALGV-------QRVD 341 (686)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~-------~~~~ 341 (686)
++++... ..+. ..+.+++|+.|++++|....++ ... ...+|+.|.+..+..... ....
T Consensus 179 l~~n~~~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 179 LHLSESA---------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp EECSBST---------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred cccCccc---------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 6666543 0111 1234666777777766654432 111 345556655543321100 0122
Q ss_pred CCCccEEEEcCccCccchhh----hhhHhhhhccccEEEEccccCccccc-ccCCC-CCCCCCCceEEeecCCCceEeec
Q 005634 342 SETSRLVELCGLANVSSLLE----NYGMKMLLKKTEDINLDELKGVQNVV-HELDD-GEGFPRLKHLQVKLCSEILHIVG 415 (686)
Q Consensus 342 ~~~l~~l~l~~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~-l~~l~~L~~L~l~~~~~l~~~~~ 415 (686)
...++.+.+.++.-.. +.. .......+++++.|.+.++....... ..+.. ....++|+.|++.++. ++.++.
T Consensus 250 ~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~ 327 (549)
T 2z81_A 250 ILELSEVEFDDCTLNG-LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC 327 (549)
T ss_dssp CTTCCEEEEESCEEEC-CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH
T ss_pred hccccccccccccccc-cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCH
Confidence 3345555555442100 000 00011223455555554432111000 00000 0123567777776653 222211
Q ss_pred cccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccC-chhhhhcCCccEEEEeecccce
Q 005634 416 SVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFS-FSIAKNLLRLQKVEVASCYKLE 494 (686)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~ 494 (686)
. ....+++|++|+++++.--..++..... .+.+++|++|++++| +++.++. ...+..+++|++|++++| .++
T Consensus 328 ~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 400 (549)
T 2z81_A 328 S----FSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFH 400 (549)
T ss_dssp H----HHHHCTTCCEEECCSSCCCHHHHHHHTC-TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCC
T ss_pred H----HHhcCccccEEEccCCccccccccchhh-hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCc
Confidence 0 1135788999999886533322211111 456889999999986 4666643 134678899999999887 455
Q ss_pred eeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEe
Q 005634 495 MIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEIS 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 574 (686)
.++ .....+++|++|+++++ .++.+.... .++|+.|++++| +++.++ ..+++|++|+++
T Consensus 401 ~lp--------~~~~~~~~L~~L~Ls~N-~l~~l~~~~------~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls 459 (549)
T 2z81_A 401 PMP--------DSCQWPEKMRFLNLSST-GIRVVKTCI------PQTLEVLDVSNN-NLDSFS-----LFLPRLQELYIS 459 (549)
T ss_dssp CCC--------SCCCCCTTCCEEECTTS-CCSCCCTTS------CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECC
T ss_pred cCC--------hhhcccccccEEECCCC-Ccccccchh------cCCceEEECCCC-Chhhhc-----ccCChhcEEECC
Confidence 554 24556788999999998 566543321 368999999998 566653 468899999999
Q ss_pred eccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCCc
Q 005634 575 YCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNM 647 (686)
Q Consensus 575 ~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L 647 (686)
++ +++.+ +.. ..+++|+.|++.++ ++++++... +..+++|+.|++++++-.
T Consensus 460 ~N-~l~~i--p~~------------~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 460 RN-KLKTL--PDA------------SLFPVLLVMKISRN-QLKSVPDGI------FDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SS-CCSSC--CCG------------GGCTTCCEEECCSS-CCCCCCTTG------GGGCTTCCEEECCSSCBC
T ss_pred CC-ccCcC--CCc------------ccCccCCEEecCCC-ccCCcCHHH------HhcCcccCEEEecCCCcc
Confidence 87 45544 211 12688999988775 566554422 357899999999888743
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=2.8e-30 Score=294.35 Aligned_cols=423 Identities=15% Similarity=0.058 Sum_probs=231.9
Q ss_pred cCCCCCEEEEccCCCC-CCCCC--cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC-Cchh---
Q 005634 122 TIQKDPIAISLPRRDI-QELPK--RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-LPSS--- 193 (686)
Q Consensus 122 ~~~~~l~~l~l~~~~~-~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~--- 193 (686)
....++++|++++|.+ +.+|. .+ .+++|++|++++|. ....+|..++.++++|++|++++|.++. .|..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT---LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE---EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc---cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 3456677777777776 33444 33 67777777777776 3444555444566667777777666653 2333
Q ss_pred hhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEE
Q 005634 194 LGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKEL 273 (686)
Q Consensus 194 l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 273 (686)
++++++|++|++++|.+.....++.+++|++|++++|.++..+..++++++|++|++++|...+.+|.. ++++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEE
Confidence 455666666666666555422235556666666666655532223555666666666655522233433 5556666666
Q ss_pred EecCCccccccccC--------------CCccchhhhCCC-CCccEEEEeecCCC-cCCCcc-cccCccEEEEEecCcC-
Q 005634 274 YMGDSFSQWDKVKG--------------GRNASLAELKGL-SKLTTLEIQVRDAQ-ILPQDL-VFVELQRYRICIGEAL- 335 (686)
Q Consensus 274 ~l~~~~~~~~~~~~--------------~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~- 335 (686)
++++|.+....+.. -....+..+... ++|++|++++|.+. .+|..+ .+++|+.|++..+...
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 66555443100000 000112222222 45555555555433 333333 4555555555433211
Q ss_pred --Ccc-ccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceE
Q 005634 336 --GVQ-RVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILH 412 (686)
Q Consensus 336 --~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~ 412 (686)
... ....++++.+++.+..-.. ..+.++....++|+.|++.++.-.......+. ...+++|++|++.++.-...
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTT-CSTTCCCCEEECCSSEEEEE
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhh-hcccCCccEEECCCCccccc
Confidence 110 2234455555555332100 01122222223666666665443222222221 12266777777777642222
Q ss_pred eeccccccccccCCcccEeeccccccch-hhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecc
Q 005634 413 IVGSVGRVRRKVFPLLESLSLIYLNNLE-TICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCY 491 (686)
Q Consensus 413 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 491 (686)
++. ....+++|+.|+++++. ++ .++.. .+.+++|++|++++|.--..+|. .+..+++|++|++++|.
T Consensus 410 ~p~-----~l~~l~~L~~L~Ls~N~-l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 410 IPP-----TLSNCSELVSLHLSFNY-LSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFND 477 (768)
T ss_dssp CCG-----GGGGCTTCCEEECCSSE-EESCCCGG----GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSC
T ss_pred cCH-----HHhcCCCCCEEECcCCc-ccCcccHH----HhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCc
Confidence 211 34567888888888754 33 22221 45678888888888763334443 56788889999888876
Q ss_pred cceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEE
Q 005634 492 KLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYL 571 (686)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L 571 (686)
-...++ .....+++|+.|+++++ .++..... ....+++|+.|++++|.-...+ +..+..+++|+.|
T Consensus 478 l~~~~p--------~~l~~l~~L~~L~L~~N-~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L 543 (768)
T 3rgz_A 478 LTGEIP--------SGLSNCTNLNWISLSNN-RLTGEIPK---WIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWL 543 (768)
T ss_dssp CCSCCC--------GGGGGCTTCCEEECCSS-CCCSCCCG---GGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEE
T ss_pred ccCcCC--------HHHhcCCCCCEEEccCC-ccCCcCCh---HHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEE
Confidence 554444 35677899999999998 45432221 1346889999999998543344 3457889999999
Q ss_pred EEeecc
Q 005634 572 EISYCS 577 (686)
Q Consensus 572 ~i~~C~ 577 (686)
++++|+
T Consensus 544 ~Ls~N~ 549 (768)
T 3rgz_A 544 DLNTNL 549 (768)
T ss_dssp ECCSSE
T ss_pred ECCCCc
Confidence 999876
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=8.7e-31 Score=291.96 Aligned_cols=407 Identities=15% Similarity=0.088 Sum_probs=248.7
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~ 206 (686)
+.++..+..+..+|..+ .+.+++|++++|. ...+++..|+++++|++|++++|.+..+ |..|+++++|++|+++
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNV----LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCC----CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCc----cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 46777888888888765 3579999999998 4456555569999999999999999865 7789999999999999
Q ss_pred CCCCCC--cccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 207 GCGLKD--IAIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 207 ~~~l~~--~~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
+|.++. |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 166 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-- 166 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC--
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc--
Confidence 999877 68899999999999999999987 5679999999999999998 77763222566999999999999875
Q ss_pred cccCCCccchhhhCCCCCcc--EEEEeecCCCcCCCcc-cccCccEEEEEecCcCCccccC-------------------
Q 005634 284 KVKGGRNASLAELKGLSKLT--TLEIQVRDAQILPQDL-VFVELQRYRICIGEALGVQRVD------------------- 341 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~------------------- 341 (686)
...+..++.+++|+ .|++++|.+..++... ...+|+.+++..+.........
T Consensus 167 ------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 167 ------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp ------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 22345677888888 7888888877665544 5556666665432210000000
Q ss_pred ------------CCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCC
Q 005634 342 ------------SETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSE 409 (686)
Q Consensus 342 ------------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 409 (686)
...++.+.+.+.. ...+ .......+++|+.|++.++.- +.+... +..+++|++|+++++.-
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n~l-~~lp~~---l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHY-FFNI--SSNTFHCFSGLQELDLTATHL-SELPSG---LVGLSTLKKLVLSANKF 313 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCC-CSSC--CTTTTTTCTTCSEEECTTSCC-SCCCSS---CCSCTTCCEEECTTCCC
T ss_pred cccChhHhchhhcCceeEEEeecCc-cCcc--CHHHhccccCCCEEeccCCcc-CCCChh---hcccccCCEEECccCCc
Confidence 0134444444321 0111 112223355666666665432 222121 34566666666665531
Q ss_pred ceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccC-chhhhhcCCccEEEEe
Q 005634 410 ILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFS-FSIAKNLLRLQKVEVA 488 (686)
Q Consensus 410 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~ 488 (686)
..+. ......+++|++|+++++.....++... .+.+++|++|+++++. ++.... ...+..+++|++|+++
T Consensus 314 -~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 314 -ENLC----QISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp -SBGG----GGCGGGCTTCSEEECCSCSSCCBCCSST---TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECC
T ss_pred -CcCc----hhhhhccCcCCEEECCCCCcccccchhh---hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECC
Confidence 1110 0123455666666666643222222221 3346666666666643 333320 1234566666666666
Q ss_pred ecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccC
Q 005634 489 SCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQL 568 (686)
Q Consensus 489 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 568 (686)
+|.- ..+. ......+++|++|+++++ .++...... ....+++|+.|++++|. ++..++ ..+..+++|
T Consensus 385 ~n~l-~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 451 (606)
T 3t6q_A 385 YNEP-LSLK-------TEAFKECPQLELLDLAFT-RLKVKDAQS--PFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPAL 451 (606)
T ss_dssp SCSC-EEEC-------TTTTTTCTTCSEEECTTC-CEECCTTCC--TTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTC
T ss_pred CCcC-CcCC-------HHHhcCCccCCeEECCCC-cCCCcccch--hhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCC
Confidence 6532 2222 123345566666666665 333221111 12345666666666653 333322 334556666
Q ss_pred cEEEEeecc
Q 005634 569 QYLEISYCS 577 (686)
Q Consensus 569 ~~L~i~~C~ 577 (686)
++|++++|.
T Consensus 452 ~~L~L~~n~ 460 (606)
T 3t6q_A 452 QHLNLQGNH 460 (606)
T ss_dssp CEEECTTCB
T ss_pred CEEECCCCC
Confidence 666666654
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=288.00 Aligned_cols=439 Identities=18% Similarity=0.184 Sum_probs=303.3
Q ss_pred CchhhhhcccCCCCCEEEEccCCCCCCCCCc--CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 113 ADVKKKMEETIQKDPIAISLPRRDIQELPKR--LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 113 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
.....+|. ....++++|++++|.+..++.. .++++|++|++++|. ...++...|+++++|++|++++|.++.+
T Consensus 17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc----CCccCcccccCchhCCEEeCcCCcCCcc
Confidence 34445554 4567899999999999877653 389999999999998 4457666679999999999999999876
Q ss_pred c-hhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCC--cchhhcCCCCCCEEeCcCCcCccccChhhhc
Q 005634 191 P-SSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQ--LPLEIGQLTRLQLLDLSDCRSLVVIAPNVIS 265 (686)
Q Consensus 191 p-~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 265 (686)
| ..++++++|++|++++|.++. + ..++++++|++|++++|.++. +|..++++++|++|++++|. +..++...++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence 5 679999999999999999888 4 469999999999999999885 79999999999999999998 7777655578
Q ss_pred CCCCC----cEEEecCCccccccccCCCccchhhhCCCCCccEEEEeec-------------------------------
Q 005634 266 KFSRL----KELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVR------------------------------- 310 (686)
Q Consensus 266 ~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~------------------------------- 310 (686)
++++| ++|++++|.+....+ ..+..+ +|+.|+++.+
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~--------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQP--------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECT--------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred chhccchhhhhcccCCCCceecCH--------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 88888 889998887652211 111111 2333333322
Q ss_pred ---------------------------C-CCcCCCcc-cccCccEEEEEecCcCCcc--ccCCCCccEEEEcCccCccch
Q 005634 311 ---------------------------D-AQILPQDL-VFVELQRYRICIGEALGVQ--RVDSETSRLVELCGLANVSSL 359 (686)
Q Consensus 311 ---------------------------~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~ 359 (686)
. ....+..+ .+++|+.+++..+...... .... +++.+.+.++.- ..+
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l 319 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQF 319 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSC
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-ccc
Confidence 1 11122333 5678888888655432221 2233 788888886632 122
Q ss_pred hhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccc
Q 005634 360 LENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNL 439 (686)
Q Consensus 360 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 439 (686)
+ . ..+++|+.|.+.++...... . ...+++|++|+++++.- ..+.. .......+++|+.|+++++. +
T Consensus 320 ~--~---~~l~~L~~L~l~~n~~~~~~----~-~~~~~~L~~L~l~~n~l-~~~~~--~~~~~~~~~~L~~L~l~~n~-l 385 (570)
T 2z63_A 320 P--T---LKLKSLKRLTFTSNKGGNAF----S-EVDLPSLEFLDLSRNGL-SFKGC--CSQSDFGTTSLKYLDLSFNG-V 385 (570)
T ss_dssp C--B---CBCSSCCEEEEESCBSCCBC----C-CCBCTTCCEEECCSSCC-BEEEE--EEHHHHTCSCCCEEECCSCS-E
T ss_pred C--c---ccccccCEEeCcCCcccccc----c-cccCCCCCEEeCcCCcc-Ccccc--ccccccccCccCEEECCCCc-c
Confidence 1 1 25678888988876543221 1 35788999999988752 22210 00134567899999998864 4
Q ss_pred hhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeec
Q 005634 440 ETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNL 519 (686)
Q Consensus 440 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 519 (686)
..++.. ...+++|++|++++|. ++..++...+.++++|++|++++|......+ .....+++|++|++
T Consensus 386 ~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l 452 (570)
T 2z63_A 386 ITMSSN----FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKM 452 (570)
T ss_dssp EEEEEE----EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEEC
T ss_pred cccccc----ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch--------hhhhcCCcCcEEEC
Confidence 444432 4468899999998865 5555443457788999999998876443332 34567889999999
Q ss_pred ccccccc--cccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccc
Q 005634 520 RELRNIK--KIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFI 597 (686)
Q Consensus 520 ~~~~~l~--~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~ 597 (686)
.+| .++ .++ .....+++|+.|++++| +++.+++ ..+..+++|++|++++|. ++.+.. ..
T Consensus 453 ~~n-~l~~~~~p----~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~---------- 513 (570)
T 2z63_A 453 AGN-SFQENFLP----DIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMASNQ-LKSVPD-GI---------- 513 (570)
T ss_dssp TTC-EEGGGEEC----SCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCT-TT----------
T ss_pred cCC-cCccccch----hhhhcccCCCEEECCCC-ccccCCh-hhhhcccCCCEEeCCCCc-CCCCCH-HH----------
Confidence 998 443 222 12346889999999998 5666633 456788999999998874 554421 11
Q ss_pred cccccccccccccccccc
Q 005634 598 ELKVFPKLHSMRLQWLRK 615 (686)
Q Consensus 598 ~~~~~p~L~~L~l~~c~~ 615 (686)
+..+++|+.|++.+++-
T Consensus 514 -~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 514 -FDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp -TTTCTTCCEEECCSSCB
T ss_pred -hhcccCCcEEEecCCcc
Confidence 12268888888877654
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=288.81 Aligned_cols=402 Identities=16% Similarity=0.156 Sum_probs=265.8
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~ 206 (686)
+.++-++..+..+|..+ .+++++|++++|. ...++...|.++++|++|++++|.++.++ ..++++++||+|+++
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCC----CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCc----cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 45666677778888754 4689999999998 44566656799999999999999998775 568999999999999
Q ss_pred CCCCCC--cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccc--cChhhhcCCCCCcEEEecCCccc
Q 005634 207 GCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVV--IAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 207 ~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+|.++. +..++++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 999888 4789999999999999999998876 69999999999999998 664 6776 899999999999999875
Q ss_pred cccccCCCccchhhhCCCCCc-cEEEEeecCCCcCCCcc-cccCccEEEEEecCcCCc----cccCCC------------
Q 005634 282 WDKVKGGRNASLAELKGLSKL-TTLEIQVRDAQILPQDL-VFVELQRYRICIGEALGV----QRVDSE------------ 343 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~----~~~~~~------------ 343 (686)
.. .+..+..+.+++.+ +.|+++.|....++... ...+|+.+++..+..... ......
T Consensus 163 ~~-----~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 163 SI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp EE-----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred ee-----cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 11 11233344444322 78999999877766554 444677777764310000 000011
Q ss_pred --------------------CccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEE
Q 005634 344 --------------------TSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQ 403 (686)
Q Consensus 344 --------------------~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~ 403 (686)
.++.+.+.+... ...........+++|+.|.+.++.. +.+... ...+ +|++|+
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~---~~~~-~L~~L~ 310 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY--YLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDF---SYNF-GWQHLE 310 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTE--EESCSTTTTGGGTTCSEEEEESCEE-CSCCBC---CSCC-CCSEEE
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchh--hhhhchhhhcCcCcccEEEecCccc-hhhhhh---hccC-CccEEe
Confidence 122222221100 0000112234568889999887643 222222 3455 889999
Q ss_pred eecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccC-chhhhhcCCc
Q 005634 404 VKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFS-FSIAKNLLRL 482 (686)
Q Consensus 404 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L 482 (686)
+.++.-. .+ +...+++|+.|.+.++.....+ + ...+++|++|++++|. ++.... ...+..+++|
T Consensus 311 l~~n~~~-~l-------~~~~l~~L~~L~l~~n~~~~~~-----~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 311 LVNCKFG-QF-------PTLKLKSLKRLTFTSNKGGNAF-----S-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp EESCBCS-SC-------CBCBCSSCCEEEEESCBSCCBC-----C-CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCC
T ss_pred eccCccc-cc-------CcccccccCEEeCcCCcccccc-----c-cccCCCCCEEeCcCCc-cCccccccccccccCcc
Confidence 9887522 22 2346788888888876532211 1 3567888888888764 444421 2356778888
Q ss_pred cEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHH
Q 005634 483 QKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMV 562 (686)
Q Consensus 483 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 562 (686)
++|++++|.- ..++ .....+++|++|++.++ .+....... ....+++|+.|++++|. ++..+ +..+
T Consensus 376 ~~L~l~~n~l-~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~-~~~~ 441 (570)
T 2z63_A 376 KYLDLSFNGV-ITMS--------SNFLGLEQLEHLDFQHS-NLKQMSEFS--VFLSLRNLIYLDISHTH-TRVAF-NGIF 441 (570)
T ss_dssp CEEECCSCSE-EEEE--------EEEETCTTCCEEECTTS-EEESCTTSC--TTTTCTTCCEEECTTSC-CEECC-TTTT
T ss_pred CEEECCCCcc-cccc--------ccccccCCCCEEEccCC-ccccccchh--hhhcCCCCCEEeCcCCc-ccccc-hhhh
Confidence 8888887653 3333 12456777777777776 444332211 13456777777777773 44332 2345
Q ss_pred HhhccCcEEEEeecc
Q 005634 563 NSLLQLQYLEISYCS 577 (686)
Q Consensus 563 ~~l~~L~~L~i~~C~ 577 (686)
..+++|++|++++|.
T Consensus 442 ~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 442 NGLSSLEVLKMAGNS 456 (570)
T ss_dssp TTCTTCCEEECTTCE
T ss_pred hcCCcCcEEECcCCc
Confidence 667777777777765
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=8.9e-30 Score=287.70 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=131.6
Q ss_pred chhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc
Q 005634 114 DVKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP 191 (686)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 191 (686)
.+..+|. ....++++|++++|.+..++.. + ++++|++|++++|. ...+++..|+++++|++|++++|.++.+|
T Consensus 15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCHHHHhcccCcCEEECCCCccCccC
Confidence 3444554 3457899999999999888764 3 88999999999997 34555556689999999999999999888
Q ss_pred h-hhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhc--
Q 005634 192 S-SLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVIS-- 265 (686)
Q Consensus 192 ~-~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-- 265 (686)
. .++++++|++|++++|.++. + ..++++++|++|++++|.++.. |..++++++|++|++++|. ++.++...++
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence 7 58999999999999999887 4 6799999999999999988854 5568899999999999987 7777665444
Q ss_pred CCCCCcEEEecCCccc
Q 005634 266 KFSRLKELYMGDSFSQ 281 (686)
Q Consensus 266 ~l~~L~~L~l~~~~~~ 281 (686)
++++|++|++++|.+.
T Consensus 169 ~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTCEESEEECTTCCCC
T ss_pred ccccccEEECCCCccc
Confidence 5688999999988765
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-29 Score=285.39 Aligned_cols=142 Identities=24% Similarity=0.266 Sum_probs=111.2
Q ss_pred CCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCC
Q 005634 123 IQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLIN 199 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~ 199 (686)
...++++|++++|.+..+++. + ++++|++|++++|. ...+|...|+++++|++|++++|.+..+| ..++++++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE----LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc----cCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 367899999999988766543 3 78999999999987 44677766789999999999999888776 56889999
Q ss_pred CcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-h--cCCCCCCEEeCcCCcCccccChhhhcCCCC
Q 005634 200 LQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-I--GQLTRLQLLDLSDCRSLVVIAPNVISKFSR 269 (686)
Q Consensus 200 Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i--~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 269 (686)
|++|++++|.++. +..++++++|++|++++|.++.++.. + ..+++|++|++++|. ++.+++..++.+.+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~ 196 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGR 196 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhh
Confidence 9999999998776 57788899999999999988877653 3 356788999998886 66665544554433
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.1e-30 Score=293.64 Aligned_cols=478 Identities=15% Similarity=0.140 Sum_probs=264.2
Q ss_pred CCchhhhhcccCCCCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC
Q 005634 112 VADVKKKMEETIQKDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS 189 (686)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 189 (686)
...+..+|. ...++++|++++|.+..+.. .+ ++++|++|++++|. ....+++..|+++++|++|++++|.+..
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~---~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY---TPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC---CCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC---CccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 345556666 67899999999999976643 33 89999999999996 4667766667999999999999999986
Q ss_pred C-chhhhcCCCCcEEEccCCCCCC--ccc--ccCCCCCCEEEccCCCCCCc--chhhcCCCCCCEEeCcCCcCccccChh
Q 005634 190 L-PSSLGRLINLQTLCLDGCGLKD--IAI--VGQLKKLEILSLRDSKIKQL--PLEIGQLTRLQLLDLSDCRSLVVIAPN 262 (686)
Q Consensus 190 l-p~~l~~l~~Lr~L~L~~~~l~~--~~~--i~~L~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~ 262 (686)
+ |..++++++|++|++++|.+++ |.. ++++++|++|++++|.++.+ +..++++++|++|++++|. +..+.+.
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~ 166 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEH 166 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHH
Confidence 5 7889999999999999999876 544 89999999999999998865 3579999999999999988 5554443
Q ss_pred hhcCC--CCCcEEEecCCccccccccCCCccchhhhCCCC------CccEEEEeecCCC-cCCCcc----cccCccEEEE
Q 005634 263 VISKF--SRLKELYMGDSFSQWDKVKGGRNASLAELKGLS------KLTTLEIQVRDAQ-ILPQDL----VFVELQRYRI 329 (686)
Q Consensus 263 ~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~l~~L~~L~l 329 (686)
.++.+ ++|+.|++++|.+... .+..++.+. .|+.|++++|... ..+..+ ...+++.+.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSR--------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCC--------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred HcccccCCccceEECCCCccccc--------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 37777 8999999999886521 112223332 4999999988643 233322 3345555554
Q ss_pred EecC---cCC-----------ccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCC
Q 005634 330 CIGE---ALG-----------VQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEG 395 (686)
Q Consensus 330 ~~~~---~~~-----------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 395 (686)
.... ... +......+++.+++.+..- ..+ .......+++|+.|.+.++.-....... +..
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~ 312 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSL--NSRVFETLKDLKVLNLAYNKINKIADEA---FYG 312 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEE--CSCCSSSCCCCCEEEEESCCCCEECTTT---TTT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcc-ccc--ChhhhhcCCCCCEEECCCCcCCCCChHH---hcC
Confidence 3110 000 0000113444444443210 000 1111223344555555443221111111 234
Q ss_pred CCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchh
Q 005634 396 FPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSI 475 (686)
Q Consensus 396 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 475 (686)
+++|++|+++++. +..+. ......+++|+.|+++++ .+..+.... ...+++|++|+++++ .++.++
T Consensus 313 l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~i~---- 378 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQT---FKFLEKLQTLDLRDN-ALTTIH---- 378 (844)
T ss_dssp CSSCCEEEEESCC-CSCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSC---SCSCCCCCEEEEETC-CSCCCS----
T ss_pred CCCCCEEECCCCC-CCccC----HHHhcCCCCCCEEECCCC-CCCccChhh---hcCCCCCCEEECCCC-CCCccc----
Confidence 4455555555442 11110 002233445555555443 233322211 233455555555543 233332
Q ss_pred hhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCccc
Q 005634 476 AKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKY 555 (686)
Q Consensus 476 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 555 (686)
.+++|+.|.++++. +..++ ....+++.|+++++ .++.+.... ....+++|+.|+++++ +++.
T Consensus 379 --~~~~L~~L~l~~N~-l~~l~-----------~~~~~l~~L~ls~N-~l~~l~~~~--~~~~l~~L~~L~Ls~N-~l~~ 440 (844)
T 3j0a_A 379 --FIPSIPDIFLSGNK-LVTLP-----------KINLTANLIHLSEN-RLENLDILY--FLLRVPHLQILILNQN-RFSS 440 (844)
T ss_dssp --SCCSCSEEEEESCC-CCCCC-----------CCCTTCCEEECCSC-CCCSSTTHH--HHTTCTTCCEEEEESC-CCCC
T ss_pred --CCCCcchhccCCCC-ccccc-----------ccccccceeecccC-ccccCchhh--hhhcCCccceeeCCCC-cccc
Confidence 14445555554432 22222 11234445555444 333321100 0124566666666665 3443
Q ss_pred ccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCC
Q 005634 556 LFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPS 635 (686)
Q Consensus 556 l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~s 635 (686)
.++......+++|+.|+++++. ++.+.. .+.. ...+..+++|+.|++.++ ++++++... +..+++
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~-~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------~~~l~~ 505 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENM-LQLAWE-TELC------WDVFEGLSHLQVLYLNHN-YLNSLPPGV------FSHLTA 505 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCC-CSSSCC-SCCC------SSCSSCBCCEECCCCCHH-HHTTCCTTS------SSSCCS
T ss_pred cccccccccCCccccccCCCCc-cccccc-cccc------hhhhcCcccccEEECCCC-cccccChhH------ccchhh
Confidence 3222223345666666666643 221110 0000 001222566666666655 455544322 346778
Q ss_pred cceeeecCCCCceeeccccCCC
Q 005634 636 LLNLNIDGCSNMLRFISTSSPE 657 (686)
Q Consensus 636 L~~L~i~~C~~L~~l~~~~~~~ 657 (686)
|+.|+++++ +|+.++....++
T Consensus 506 L~~L~Ls~N-~l~~l~~~~~~~ 526 (844)
T 3j0a_A 506 LRGLSLNSN-RLTVLSHNDLPA 526 (844)
T ss_dssp CSEEEEESC-CCSSCCCCCCCS
T ss_pred hheeECCCC-CCCccChhhhhc
Confidence 888888877 566666554443
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.4e-29 Score=282.23 Aligned_cols=393 Identities=15% Similarity=0.165 Sum_probs=262.1
Q ss_pred CCCEEEEccCCCC-CCCCCcC-CCCCcceEEc-ccCCCcc----------------------------------------
Q 005634 125 KDPIAISLPRRDI-QELPKRL-QCPHLQLFLL-ITKGIAP---------------------------------------- 161 (686)
Q Consensus 125 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~~~---------------------------------------- 161 (686)
.++..|+|+++.+ +.+|+.+ ++++|++|++ ++|.+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5799999999999 5778766 8999999999 5553100
Q ss_pred ---------------------------------cccccchhHhcCCCCccEEEecCccCCC------------------C
Q 005634 162 ---------------------------------VSMQISDLFFEGTEELKVLSLNRIHFSS------------------L 190 (686)
Q Consensus 162 ---------------------------------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 190 (686)
....+|..+ +++++|++|++++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 011167664 899999999999999988 9
Q ss_pred chhhh--cCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCC-CCC--cchhhcCCC-------CCCEEeCcCCcCc
Q 005634 191 PSSLG--RLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSK-IKQ--LPLEIGQLT-------RLQLLDLSDCRSL 256 (686)
Q Consensus 191 p~~l~--~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~~l 256 (686)
|..++ ++++|++|+|++|.+.. |..++++++|++|++++|. ++. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 99988 99999999999999655 8899999999999999997 884 898888776 99999999998 7
Q ss_pred cccCh--hhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc-cccC-ccEEEEEec
Q 005634 257 VVIAP--NVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL-VFVE-LQRYRICIG 332 (686)
Q Consensus 257 ~~lp~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~-L~~L~l~~~ 332 (686)
..+|. . ++++++|++|++++|.+. .+..++.+++|+.|++++|.+..+|..+ .+.+ |+.|.+..+
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~----------~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR----------HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC----------BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc----------cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 79998 6 899999999999999865 2227889999999999999988888776 7777 888887655
Q ss_pred CcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCC-CCC--CCCCCceEEeecCCC
Q 005634 333 EALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELD-DGE--GFPRLKHLQVKLCSE 409 (686)
Q Consensus 333 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~--~l~~L~~L~l~~~~~ 409 (686)
...... ..... ...++|+.|.+.++.-...+ +.++ ... .+++|+.|+++++.
T Consensus 630 ~L~~lp-~~~~~----------------------~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~- 684 (876)
T 4ecn_A 630 KLKYIP-NIFNA----------------------KSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNE- 684 (876)
T ss_dssp CCCSCC-SCCCT----------------------TCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSC-
T ss_pred CCCcCc-hhhhc----------------------cccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCc-
Confidence 422111 00000 00123555555544322111 1110 011 23467777777664
Q ss_pred ceEeeccccccccccCCcccEeeccccccchhhcccCCCC----CCcCCCcCEEEEecCCCCccccCchhhh--hcCCcc
Q 005634 410 ILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTE----DQSFSNLRIIKVRNSQKLKQLFSFSIAK--NLLRLQ 483 (686)
Q Consensus 410 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~ 483 (686)
+..++. .....+++|+.|+++++ .++.++...... ...+++|+.|++++| +++.+|. .+. .+++|+
T Consensus 685 L~~lp~----~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~ 756 (876)
T 4ecn_A 685 IQKFPT----ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD--DFRATTLPYLS 756 (876)
T ss_dssp CCSCCH----HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--GGSTTTCTTCC
T ss_pred CCccCH----HHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH--HhhhccCCCcC
Confidence 222211 01224677777777764 345444332210 112347778888776 4666654 333 677788
Q ss_pred EEEEeecccceeeeccccccccccccccCCcceeecccccccc--cccccCCCccccCCCCeEEEEecCCCcccccchhH
Q 005634 484 KVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIK--KIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSM 561 (686)
Q Consensus 484 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 561 (686)
.|++++|. +..++ .....+++|+.|+|++++.+. .+....+.....+++|+.|++++|. +..+|..
T Consensus 757 ~L~Ls~N~-L~~lp--------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-- 824 (876)
T 4ecn_A 757 NMDVSYNC-FSSFP--------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-- 824 (876)
T ss_dssp EEECCSSC-CSSCC--------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--
T ss_pred EEEeCCCC-CCccc--------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh--
Confidence 88877753 33343 245567778888776643111 0111111123457788888888874 4666442
Q ss_pred HHhhccCcEEEEeecc
Q 005634 562 VNSLLQLQYLEISYCS 577 (686)
Q Consensus 562 ~~~l~~L~~L~i~~C~ 577 (686)
-.++|+.|+|++|+
T Consensus 825 --l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 825 --LTPQLYILDIADNP 838 (876)
T ss_dssp --CCSSSCEEECCSCT
T ss_pred --hcCCCCEEECCCCC
Confidence 12678888888776
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.1e-29 Score=277.43 Aligned_cols=395 Identities=14% Similarity=0.145 Sum_probs=266.0
Q ss_pred CCCEEEEccCCCC-CCCCCcC-CCCCcceEEcccCCC-------------------------------------------
Q 005634 125 KDPIAISLPRRDI-QELPKRL-QCPHLQLFLLITKGI------------------------------------------- 159 (686)
Q Consensus 125 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~------------------------------------------- 159 (686)
.+++.|+++++.+ +.+|+.+ ++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999999998 5777666 899999999999842
Q ss_pred -------------------------------cccccccchhHhcCCCCccEEEecCccCCC------------------C
Q 005634 160 -------------------------------APVSMQISDLFFEGTEELKVLSLNRIHFSS------------------L 190 (686)
Q Consensus 160 -------------------------------~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 190 (686)
......+|..+ +++++|++|++++|.++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00122377764 899999999999999988 9
Q ss_pred chhhh--cCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCC-CC--CcchhhcCC------CCCCEEeCcCCcCcc
Q 005634 191 PSSLG--RLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSK-IK--QLPLEIGQL------TRLQLLDLSDCRSLV 257 (686)
Q Consensus 191 p~~l~--~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~-i~--~lp~~i~~L------~~L~~L~l~~~~~l~ 257 (686)
|+.++ ++++|++|++++|.+.. |..++++++|++|++++|. ++ .+|..++++ ++|++|++++|. ++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 99998 99999999999999655 8899999999999999997 88 499999887 999999999998 77
Q ss_pred ccCh--hhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc-cccC-ccEEEEEecC
Q 005634 258 VIAP--NVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL-VFVE-LQRYRICIGE 333 (686)
Q Consensus 258 ~lp~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~-L~~L~l~~~~ 333 (686)
.+|. . ++++++|++|++++|.+. ...+ .++.+++|+.|++++|.+..+|..+ .+.+ |+.|++..+.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~--------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLE--------GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCE--------EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCc--------cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 9998 6 899999999999999765 1223 6778889999999999988888777 7777 8888776544
Q ss_pred cCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCC----CCCCCCCceEEeecCCC
Q 005634 334 ALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDD----GEGFPRLKHLQVKLCSE 409 (686)
Q Consensus 334 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----l~~l~~L~~L~l~~~~~ 409 (686)
..... .... ...+++|+.|++.++.-.......+.+ .-.+++|+.|+++++.
T Consensus 389 l~~lp-~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~- 444 (636)
T 4eco_A 389 LKYIP-NIFD----------------------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ- 444 (636)
T ss_dssp CSSCC-SCCC----------------------TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-
T ss_pred Ccccc-hhhh----------------------hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-
Confidence 22111 0000 001235555655554332211111110 0145577777777664
Q ss_pred ceEeeccccccccccCCcccEeeccccccchhhcccCCCC----CCcCCCcCEEEEecCCCCccccCchhhh--hcCCcc
Q 005634 410 ILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTE----DQSFSNLRIIKVRNSQKLKQLFSFSIAK--NLLRLQ 483 (686)
Q Consensus 410 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~ 483 (686)
+..++. .....+++|+.|+++++. ++.++...... ...+++|++|+++++ +++.+|. .+. .+++|+
T Consensus 445 l~~lp~----~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~l~~L~ 516 (636)
T 4eco_A 445 ISKFPK----ELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD--DFRATTLPYLV 516 (636)
T ss_dssp CCSCCT----HHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG--GGSTTTCTTCC
T ss_pred cCcCCH----HHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccCh--hhhhccCCCcC
Confidence 222211 012346777777777743 44444332110 011237888888775 4666654 333 778888
Q ss_pred EEEEeecccceeeeccccccccccccccCCcceeecccccccc--cccccCCCccccCCCCeEEEEecCCCcccccchhH
Q 005634 484 KVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIK--KIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSM 561 (686)
Q Consensus 484 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 561 (686)
+|+++++.- ..++ .....+++|+.|+++++..+. .+....+.....+++|++|++++|. ++.+|..
T Consensus 517 ~L~Ls~N~l-~~ip--------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-- 584 (636)
T 4eco_A 517 GIDLSYNSF-SKFP--------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-- 584 (636)
T ss_dssp EEECCSSCC-SSCC--------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--
T ss_pred EEECCCCCC-CCcC--------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh--
Confidence 888877543 3343 245567888888885543110 0111111123457788888888874 4777442
Q ss_pred HHhhccCcEEEEeecc
Q 005634 562 VNSLLQLQYLEISYCS 577 (686)
Q Consensus 562 ~~~l~~L~~L~i~~C~ 577 (686)
+ .++|++|++++++
T Consensus 585 ~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 I--TPNISVLDIKDNP 598 (636)
T ss_dssp C--CTTCCEEECCSCT
T ss_pred H--hCcCCEEECcCCC
Confidence 1 2788888888876
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.4e-28 Score=268.89 Aligned_cols=438 Identities=15% Similarity=0.136 Sum_probs=299.6
Q ss_pred cCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC--CchhhhcC
Q 005634 122 TIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS--LPSSLGRL 197 (686)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l 197 (686)
....++++|++++|.+..+++. + .+++|++|++++|. ...++...++++++|++|++++|.++. .|..++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH----LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc----cCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 4478899999999999777643 3 89999999999998 456777767999999999999999984 56789999
Q ss_pred CCCcEEEccCCC-CCC-c-ccccCCCCCCEEEccCCCCCC-cchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEE
Q 005634 198 INLQTLCLDGCG-LKD-I-AIVGQLKKLEILSLRDSKIKQ-LPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKEL 273 (686)
Q Consensus 198 ~~Lr~L~L~~~~-l~~-~-~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 273 (686)
++|++|++++|. +.. + ..++++++|++|++++|.++. .|..++++++|++|+++++. ...+|...++.+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEE
Confidence 999999999998 555 4 689999999999999999984 78899999999999999987 778887656789999999
Q ss_pred EecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCc-----CCCcc-cccCccEEEEEecCcCCc---------c
Q 005634 274 YMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQI-----LPQDL-VFVELQRYRICIGEALGV---------Q 338 (686)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~-~l~~L~~L~l~~~~~~~~---------~ 338 (686)
++++|.+..... ........+++|+.|+++++.... ++... .+.+|+.+.+..+..... .
T Consensus 202 ~L~~n~l~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 202 ELRDTNLARFQF-----SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp EEESCBCTTCCC-----CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred EccCCccccccc-----cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 999998752100 011123456778888888775432 11111 456777777765432111 0
Q ss_pred ccCCCCccEEEEcCccCccch--hhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeecc
Q 005634 339 RVDSETSRLVELCGLANVSSL--LENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGS 416 (686)
Q Consensus 339 ~~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~ 416 (686)
.....+++.+.+.++.-.... .....+....++++.|.+.++. ++.+...+ .+.+++|++|+++++.-...++..
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcCccccEEEccCCccccccccc
Confidence 234556777777655311100 0011123345678888888754 22222111 135788889998887532211100
Q ss_pred ccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceee
Q 005634 417 VGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMI 496 (686)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 496 (686)
......+++|+.|+++++ .++.++..... ...+++|++|++++| +++.+|. .+..+++|++|++++|. +..+
T Consensus 354 --~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 354 --SACKGAWPSLQTLVLSQN-HLRSMQKTGEI-LLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp --HTCTTSSTTCCEEECTTS-CCCCHHHHHHH-GGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCEEECTTSC-CSCC
T ss_pred --hhhhhccccCcEEEccCC-cccccccchhh-hhcCCCCCEEECCCC-CCccCCh--hhcccccccEEECCCCC-cccc
Confidence 012456788899998885 35544321000 456888999999886 5777765 45678889999888865 4444
Q ss_pred eccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeec
Q 005634 497 FGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYC 576 (686)
Q Consensus 497 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 576 (686)
+ ...+++|+.|+++++ +++.+. ..+++|++|++++| +++.+|. ...+++|+.|+++++
T Consensus 426 ~----------~~~~~~L~~L~Ls~N-~l~~~~-------~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 426 K----------TCIPQTLEVLDVSNN-NLDSFS-------LFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN 483 (549)
T ss_dssp C----------TTSCTTCSEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS
T ss_pred c----------chhcCCceEEECCCC-Chhhhc-------ccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC
Confidence 3 112368888888888 666542 24788888888888 6777754 246888888888886
Q ss_pred cCcceEecCCCCccCCCCccccccccccccccccccccc
Q 005634 577 SSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRK 615 (686)
Q Consensus 577 ~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~ 615 (686)
.++.+. .. .+..+++|+.|++.+++-
T Consensus 484 -~l~~~~--~~----------~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 484 -QLKSVP--DG----------IFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -CCCCCC--TT----------GGGGCTTCCEEECCSSCB
T ss_pred -ccCCcC--HH----------HHhcCcccCEEEecCCCc
Confidence 355442 11 122267888888877664
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=263.63 Aligned_cols=451 Identities=12% Similarity=0.072 Sum_probs=295.9
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~ 206 (686)
++++++++.+..+|..+. ++|++|++++|. ...++...|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY----ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC----CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc----ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 679999999999987665 899999999998 4456666679999999999999999876 7789999999999999
Q ss_pred CCCCCC-cccccCCCCCCEEEccCCCCCC--cchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCC--cEEEecCCccc
Q 005634 207 GCGLKD-IAIVGQLKKLEILSLRDSKIKQ--LPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRL--KELYMGDSFSQ 281 (686)
Q Consensus 207 ~~~l~~-~~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~~~ 281 (686)
+|.++. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .++.+++| ++|++++|.+.
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred CCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeeccccc
Confidence 999988 555 89999999999999985 67899999999999999987 5552 27788888 99999998762
Q ss_pred cccccCCCccchhhhCCCCCccEE--EEeecCC-CcCCCcc--cccCccEEEEEecCc-------CC--ccccCCCCccE
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTL--EIQVRDA-QILPQDL--VFVELQRYRICIGEA-------LG--VQRVDSETSRL 347 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L--~l~~~~~-~~~~~~~--~l~~L~~L~l~~~~~-------~~--~~~~~~~~l~~ 347 (686)
.....+..+..+.. +.+ +++.+.. ..++... .+++|+.+++..+.. .. ......++++.
T Consensus 152 ------~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~ 224 (520)
T 2z7x_B 152 ------GEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224 (520)
T ss_dssp ------TSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCE
T ss_pred ------cccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhh
Confidence 01223444555542 333 3444442 2233222 566777777765430 00 01234567778
Q ss_pred EEEcCccCccchhhhhhHh--hhhccccEEEEccccCcccccccCCC--CCCCCCCceEEeecCCCceEeeccccccccc
Q 005634 348 VELCGLANVSSLLENYGMK--MLLKKTEDINLDELKGVQNVVHELDD--GEGFPRLKHLQVKLCSEILHIVGSVGRVRRK 423 (686)
Q Consensus 348 l~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 423 (686)
+.+.++.-. . ....+.. ...++|+.|.+.++.-...+...+.. .+.+++|+.+++.++.- .++. .......
T Consensus 225 L~l~~~~l~-~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~-~~~~~~~ 299 (520)
T 2z7x_B 225 LTLNNIETT-W-NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ-SYIYEIF 299 (520)
T ss_dssp EEEEEEEEE-H-HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-HHHHHHH
T ss_pred ccccccccC-H-HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch-hhhhccc
Confidence 877754211 0 0011111 12458899998877533222222200 15677788888876642 1110 0000000
Q ss_pred cCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCcc-ccCchhhhhcCCccEEEEeecccceeeeccccc
Q 005634 424 VFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQ-LFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKN 502 (686)
Q Consensus 424 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 502 (686)
.-++|+.|+++++. +..+.. ...+++|++|++++|. ++. .|. .+..+++|++|++++|.- ..++.
T Consensus 300 ~~~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~L~~N~l-~~l~~---- 365 (520)
T 2z7x_B 300 SNMNIKNFTVSGTR-MVHMLC-----PSKISPFLHLDFSNNL-LTDTVFE--NCGHLTELETLILQMNQL-KELSK---- 365 (520)
T ss_dssp HTCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTTT--TCCCCSSCCEEECCSSCC-CBHHH----
T ss_pred ccCceeEEEcCCCc-cccccc-----hhhCCcccEEEeECCc-cChhhhh--hhccCCCCCEEEccCCcc-Ccccc----
Confidence 11468888888864 332211 2568899999999865 554 332 467889999999988653 32210
Q ss_pred cccccccccCCcceeeccccccccc-ccccCCCccccCCCCeEEEEecCCCcccccchhHHHhh-ccCcEEEEeeccCcc
Q 005634 503 VRFSLQVSLPSLEELNLRELRNIKK-IWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSL-LQLQYLEISYCSSME 580 (686)
Q Consensus 503 ~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~ 580 (686)
.......+++|+.|+++++ .++. ++... ...+++|+.|++++|. ++...+ ..+ ++|+.|++++|. ++
T Consensus 366 -~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~~L~~L~Ls~N~-l~ 434 (520)
T 2z7x_B 366 -IAEMTTQMKSLQQLDISQN-SVSYDEKKGD---CSWTKSLLSLNMSSNI-LTDTIF----RCLPPRIKVLDLHSNK-IK 434 (520)
T ss_dssp -HHHHHTTCTTCCEEECCSS-CCBCCGGGCS---CCCCTTCCEEECCSSC-CCGGGG----GSCCTTCCEEECCSSC-CC
T ss_pred -chHHHhhCCCCCEEECCCC-cCCcccccch---hccCccCCEEECcCCC-CCcchh----hhhcccCCEEECCCCc-cc
Confidence 0123567889999999988 5554 44332 2357889999999985 433212 122 689999998874 55
Q ss_pred eEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCC
Q 005634 581 GIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSN 646 (686)
Q Consensus 581 ~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~ 646 (686)
.+ +... ..+++|+.|++.++ ++++++... +..+++|++|+++++|-
T Consensus 435 ~i--p~~~-----------~~l~~L~~L~L~~N-~l~~l~~~~------~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 435 SI--PKQV-----------VKLEALQELNVASN-QLKSVPDGI------FDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CC--CGGG-----------GGCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSSCB
T ss_pred cc--chhh-----------hcCCCCCEEECCCC-cCCccCHHH------hccCCcccEEECcCCCC
Confidence 44 2221 12688888888776 566666531 24788999999998763
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-27 Score=270.69 Aligned_cols=458 Identities=15% Similarity=0.078 Sum_probs=311.3
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccC-CCC-chhhhcCCCCcEEEc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHF-SSL-PSSLGRLINLQTLCL 205 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~l~~l~~Lr~L~L 205 (686)
+..+.+++.+..+|. -.+++++|++++|. ...++...|+++++|++|++++|.. ..+ |..++++++||+|+|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 567778888999998 57899999999998 3345444569999999999999954 456 778999999999999
Q ss_pred cCCCCCC--cccccCCCCCCEEEccCCCCCC-cchh--hcCCCCCCEEeCcCCcCcccc-ChhhhcCCCCCcEEEecCCc
Q 005634 206 DGCGLKD--IAIVGQLKKLEILSLRDSKIKQ-LPLE--IGQLTRLQLLDLSDCRSLVVI-APNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 206 ~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~ 279 (686)
++|.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 9999887 6899999999999999999985 5665 8999999999999998 6555 33348999999999999998
Q ss_pred cccccccCCCccchhhhCCC--CCccEEEEeecCCCc-CCCcc-ccc------CccEEEEEecCcCC----cc--ccCCC
Q 005634 280 SQWDKVKGGRNASLAELKGL--SKLTTLEIQVRDAQI-LPQDL-VFV------ELQRYRICIGEALG----VQ--RVDSE 343 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~-~l~------~L~~L~l~~~~~~~----~~--~~~~~ 343 (686)
+.. .....+..+ ++|+.|+++.|.... .+... .+. .|+.|++..+.... .. .....
T Consensus 160 i~~--------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 160 IFL--------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCC--------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CCe--------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 751 122334444 789999999887543 23222 222 38888876543111 00 11223
Q ss_pred CccEEEEcCccCc-----cchhh--hhhHhh-hhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeec
Q 005634 344 TSRLVELCGLANV-----SSLLE--NYGMKM-LLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVG 415 (686)
Q Consensus 344 ~l~~l~l~~~~~~-----~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~ 415 (686)
.+..+.+...... ..+.. ...... ..++++.|++.++.-....... +..+++|+.|++.++. +..+..
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-i~~~~~ 307 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNK-INKIAD 307 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCC-CCEECT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCc-CCCCCh
Confidence 4555655411000 00100 011111 1368899999876533222111 5678999999999875 333211
Q ss_pred cccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeeccccee
Q 005634 416 SVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEM 495 (686)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 495 (686)
.....+++|++|+++++. +..+.... ...+++|+.|+++++ .++.+++ ..+..+++|++|+++++. ++.
T Consensus 308 ----~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~ 376 (844)
T 3j0a_A 308 ----EAFYGLDNLQVLNLSYNL-LGELYSSN---FYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA-LTT 376 (844)
T ss_dssp ----TTTTTCSSCCEEEEESCC-CSCCCSCS---CSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC-SCC
T ss_pred ----HHhcCCCCCCEEECCCCC-CCccCHHH---hcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC-CCc
Confidence 134568899999998854 55443322 557899999999986 5777654 246788999999998864 443
Q ss_pred eeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEee
Q 005634 496 IFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISY 575 (686)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 575 (686)
++ .+++|+.|.++++ +++.++. ...+++.|+++++ +++.++....+..+++|+.|++++
T Consensus 377 i~------------~~~~L~~L~l~~N-~l~~l~~-------~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 377 IH------------FIPSIPDIFLSGN-KLVTLPK-------INLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CS------------SCCSCSEEEEESC-CCCCCCC-------CCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEES
T ss_pred cc------------CCCCcchhccCCC-Ccccccc-------cccccceeecccC-ccccCchhhhhhcCCccceeeCCC
Confidence 33 4889999999998 6665532 2468999999987 677776666677999999999999
Q ss_pred ccCcceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCCCceeec
Q 005634 576 CSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCSNMLRFI 651 (686)
Q Consensus 576 C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L~~l~ 651 (686)
+. ++.+... .. ...+++|+.|.+.++. ++...... ..+..+..+++|+.|++++| +|+.++
T Consensus 436 N~-l~~~~~~-~~----------~~~~~~L~~L~Ls~N~-l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 496 (844)
T 3j0a_A 436 NR-FSSCSGD-QT----------PSENPSLEQLFLGENM-LQLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLP 496 (844)
T ss_dssp CC-CCCCCSS-SS----------SCSCTTCCBCEEESCC-CSSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCC
T ss_pred Cc-ccccccc-cc----------cccCCccccccCCCCc-cccccccc-cchhhhcCcccccEEECCCC-cccccC
Confidence 75 4433111 00 1116888888877653 33222111 01122357789999998876 444444
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.8e-28 Score=273.04 Aligned_cols=429 Identities=14% Similarity=0.129 Sum_probs=210.4
Q ss_pred CCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-------------CCchh--------------------
Q 005634 147 PHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-------------SLPSS-------------------- 193 (686)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-------------~lp~~-------------------- 193 (686)
.+++.|+++++. ..+.+|+++ +++++|++|++++|.+. .+|..
T Consensus 81 ~~V~~L~L~~~~---l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFG---ASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSC---CEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEEecCcc---cCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchh
Confidence 578999999998 677888776 89999999999999541 01100
Q ss_pred -hh-------------------cCCCCcEEEcc--CCCCCC-cccccCCCCCCEEEccCCCCCC----------------
Q 005634 194 -LG-------------------RLINLQTLCLD--GCGLKD-IAIVGQLKKLEILSLRDSKIKQ---------------- 234 (686)
Q Consensus 194 -l~-------------------~l~~Lr~L~L~--~~~l~~-~~~i~~L~~L~~L~l~~~~i~~---------------- 234 (686)
++ ....++.+.+. +|.++. |..++++++|++|++++|.++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 00 00011111111 223434 4555555555555555555554
Q ss_pred --cchhhc--CCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc-cccccccCCCccchhhhCCC------CCcc
Q 005634 235 --LPLEIG--QLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF-SQWDKVKGGRNASLAELKGL------SKLT 303 (686)
Q Consensus 235 --lp~~i~--~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l------~~L~ 303 (686)
+|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.. ...+..++++ ++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCC
Confidence 555555 5555555555555544455544 5555555555555554 320 0122233332 5555
Q ss_pred EEEEeecCCCcCCC--cc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccc
Q 005634 304 TLEIQVRDAQILPQ--DL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDEL 380 (686)
Q Consensus 304 ~L~l~~~~~~~~~~--~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 380 (686)
.|++++|.+..+|. .+ .+++|+.|++..+..... + + ....+++|+.|.+.++
T Consensus 309 ~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~---------------------i--p--~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK---------------------L--P--AFGSEIKLASLNLAYN 363 (636)
T ss_dssp EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE---------------------C--C--CCEEEEEESEEECCSS
T ss_pred EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc---------------------h--h--hhCCCCCCCEEECCCC
Confidence 55555555555554 33 444555554432211000 0 0 0011334444444443
Q ss_pred cCcccccccCCCCCCCCC-CceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCC----CCCcCCC
Q 005634 381 KGVQNVVHELDDGEGFPR-LKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLT----EDQSFSN 455 (686)
Q Consensus 381 ~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~~ 455 (686)
.-. .+... +..+++ |++|+++++. ++.++. ......+++|+.|+++++. +.......++ ..-.+++
T Consensus 364 ~l~-~lp~~---l~~l~~~L~~L~Ls~N~-l~~lp~---~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 364 QIT-EIPAN---FCGFTEQVENLSFAHNK-LKYIPN---IFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEE-ECCTT---SEEECTTCCEEECCSSC-CSSCCS---CCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCC
T ss_pred ccc-cccHh---hhhhcccCcEEEccCCc-Ccccch---hhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCC
Confidence 211 11111 345566 7777776654 222211 1112224467777776643 2221111100 0114557
Q ss_pred cCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCc
Q 005634 456 LRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQG 535 (686)
Q Consensus 456 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 535 (686)
|++|+++++ +++.+|. ..+..+++|++|+++++. +..++.............+++|+.|+++++ .++.++....
T Consensus 435 L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~-- 508 (636)
T 4eco_A 435 VSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR-- 508 (636)
T ss_dssp EEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS--
T ss_pred CCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhh--
Confidence 777777774 3555544 234557777777777654 334441110000000112337777777776 5555432211
Q ss_pred cccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccccccccccccccccccccc
Q 005634 536 MYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRK 615 (686)
Q Consensus 536 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~ 615 (686)
...+++|+.|++++| +++.+| ..+..+++|++|+++++..+..-....... ..+..+++|+.|++.++.-
T Consensus 509 ~~~l~~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 509 ATTLPYLVGIDLSYN-SFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWP-------EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTTCTTCCEEECCSS-CCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCCCCCC-------TTGGGCSSCCEEECCSSCC
T ss_pred hccCCCcCEEECCCC-CCCCcC--hhhhcCCCCCEEECCCCcccccCcccccCh-------HHHhcCCCCCEEECCCCcC
Confidence 024677777777776 455553 235567777777776544211000000000 0122256777777666543
Q ss_pred ccccccCCcccccccccCCCcceeeecCCCCc
Q 005634 616 LTSFANTGHIHSDLVVEFPSLLNLNIDGCSNM 647 (686)
Q Consensus 616 L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~~L 647 (686)
+.++... +++|+.|++++|+-.
T Consensus 579 -~~ip~~~---------~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 579 -RKVNEKI---------TPNISVLDIKDNPNI 600 (636)
T ss_dssp -CBCCSCC---------CTTCCEEECCSCTTC
T ss_pred -CccCHhH---------hCcCCEEECcCCCCc
Confidence 5554322 267777777777533
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.8e-28 Score=275.68 Aligned_cols=431 Identities=14% Similarity=0.107 Sum_probs=232.5
Q ss_pred CCcceEEcccCCCcccccccchhHhcCCCCccEEEe-cCccCCCC-chh-------------------------------
Q 005634 147 PHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSL-NRIHFSSL-PSS------------------------------- 193 (686)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l-~~~~~~~l-p~~------------------------------- 193 (686)
.++..|+|+++. ..+.+|+++ +++++|++|+| ++|.+..- |..
T Consensus 323 ~~V~~L~Ls~~~---L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFG---AKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTC---CEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCC---CCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 578999999998 677888776 89999999999 66643210 000
Q ss_pred ------------------h--hcCCCCcEEEccC--CCCCC-cccccCCCCCCEEEccCCCCCC----------------
Q 005634 194 ------------------L--GRLINLQTLCLDG--CGLKD-IAIVGQLKKLEILSLRDSKIKQ---------------- 234 (686)
Q Consensus 194 ------------------l--~~l~~Lr~L~L~~--~~l~~-~~~i~~L~~L~~L~l~~~~i~~---------------- 234 (686)
+ .....++.+.+.. |.++. |..+++|++|++|++++|.++.
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0 0111222222222 33444 5666677777777777776665
Q ss_pred --cchhhc--CCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc-cccccccCCCccchh----hhCCCCCccEE
Q 005634 235 --LPLEIG--QLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF-SQWDKVKGGRNASLA----ELKGLSKLTTL 305 (686)
Q Consensus 235 --lp~~i~--~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~----~l~~l~~L~~L 305 (686)
+|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +... ..+..+. .+..+++|+.|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~----~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAA----QLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHH----HHHHHHHHHHHCTTTTTTCCEE
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccc----cchHHHHhhhhcccccCCccEE
Confidence 666666 6777777777766655666655 6677777777777665 4310 0011111 22244467777
Q ss_pred EEeecCCCcCCC--cc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccC
Q 005634 306 EIQVRDAQILPQ--DL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKG 382 (686)
Q Consensus 306 ~l~~~~~~~~~~--~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 382 (686)
++++|.+..+|. .+ .+++|+.|.+..+..... + ....+++|+.|.+.++.-
T Consensus 554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l------------------------p--~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL------------------------E--AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp ECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC------------------------C--CCCTTSEESEEECCSSCC
T ss_pred EeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc------------------------h--hhcCCCcceEEECcCCcc
Confidence 777766666665 33 555666555432221100 0 111245555666555432
Q ss_pred cccccccCCCCCCCCC-CceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCC--cCCCcCEE
Q 005634 383 VQNVVHELDDGEGFPR-LKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQ--SFSNLRII 459 (686)
Q Consensus 383 ~~~~~~~l~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~l~~L~~L 459 (686)
. .+... +..+++ |+.|+++++. +..++ ........++|+.|+++++. +...........+ .+++|+.|
T Consensus 608 ~-~lp~~---l~~l~~~L~~L~Ls~N~-L~~lp---~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 608 E-EIPED---FCAFTDQVEGLGFSHNK-LKYIP---NIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp S-CCCTT---SCEECTTCCEEECCSSC-CCSCC---SCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEE
T ss_pred c-cchHH---HhhccccCCEEECcCCC-CCcCc---hhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEE
Confidence 2 22112 345666 7777777664 22221 11112223457777777654 2221110000011 34578888
Q ss_pred EEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccC
Q 005634 460 KVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCC 539 (686)
Q Consensus 460 ~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 539 (686)
++++|. ++.+|. ..+..+++|+.|+++++ .+..++.............+++|+.|+|+++ +++.++.... ...+
T Consensus 679 ~Ls~N~-L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~--~~~l 752 (876)
T 4ecn_A 679 TLSYNE-IQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR--ATTL 752 (876)
T ss_dssp ECCSSC-CCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS--TTTC
T ss_pred EccCCc-CCccCH-HHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh--hccC
Confidence 887753 556643 33456788888888776 3444442110000001223447888888887 6665433221 0257
Q ss_pred CCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccccccccccccccccccccccccc
Q 005634 540 QNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSF 619 (686)
Q Consensus 540 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l 619 (686)
++|+.|++++| +++.+| ..+..+++|+.|++++++.+..-....... ..+..+++|+.|.+.++.- +.+
T Consensus 753 ~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-------~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 753 PYLSNMDVSYN-CFSSFP--TQPLNSSQLKAFGIRHQRDAEGNRILRQWP-------TGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp TTCCEEECCSS-CCSSCC--CGGGGCTTCCEEECCCCBCTTCCBCCCCCC-------TTGGGCSSCCEEECCSSCC-CBC
T ss_pred CCcCEEEeCCC-CCCccc--hhhhcCCCCCEEECCCCCCcccccccccCh-------HHHhcCCCCCEEECCCCCC-Ccc
Confidence 78888888887 566653 245677888888887754221100000000 0122367777777776643 555
Q ss_pred ccCCcccccccccCCCcceeeecCCCCc
Q 005634 620 ANTGHIHSDLVVEFPSLLNLNIDGCSNM 647 (686)
Q Consensus 620 ~~~~~~~~~~~~~l~sL~~L~i~~C~~L 647 (686)
+... +++|+.|++++|+-.
T Consensus 822 p~~l---------~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 822 DEKL---------TPQLYILDIADNPNI 840 (876)
T ss_dssp CSCC---------CSSSCEEECCSCTTC
T ss_pred CHhh---------cCCCCEEECCCCCCC
Confidence 5432 367888888888743
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.1e-27 Score=253.75 Aligned_cols=342 Identities=15% Similarity=0.192 Sum_probs=230.7
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
..+++.|++.++.+..++....+++|++|++++|. ...++. +.++++|++|++++|.+..++. ++++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ----LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCc----cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 45688888888888777765578888888888887 334554 5788888888888888877776 7888888888
Q ss_pred EccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 204 CLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 204 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
++++|.++....++++++|++|++++|.++.+| .++++++|++|++++ . +..++. ++++++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS-- 190 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC--
Confidence 888888777444788888888888888777776 478888888888864 2 455554 778888888888887754
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhh
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENY 363 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 363 (686)
.+..+..+++|+.|++++|....++....+
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l------------------------------------------ 220 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITPLGIL------------------------------------------ 220 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGGGGGC------------------------------------------
T ss_pred --------CChhhccCCCCCEEEecCCccccccccccc------------------------------------------
Confidence 234467777888888877665443321122
Q ss_pred hHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhc
Q 005634 364 GMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETIC 443 (686)
Q Consensus 364 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 443 (686)
++|+.|.+.++.- +. ++.+..+++|+.|+++++.- ..+ .....+++|+.|+++++. ++.++
T Consensus 221 ------~~L~~L~l~~n~l-~~----~~~l~~l~~L~~L~l~~n~l-~~~------~~~~~l~~L~~L~l~~n~-l~~~~ 281 (466)
T 1o6v_A 221 ------TNLDELSLNGNQL-KD----IGTLASLTNLTDLDLANNQI-SNL------APLSGLTKLTELKLGANQ-ISNIS 281 (466)
T ss_dssp ------TTCCEEECCSSCC-CC----CGGGGGCTTCSEEECCSSCC-CCC------GGGTTCTTCSEEECCSSC-CCCCG
T ss_pred ------CCCCEEECCCCCc-cc----chhhhcCCCCCEEECCCCcc-ccc------hhhhcCCCCCEEECCCCc-cCccc
Confidence 3333343333221 11 11134567777777776642 111 124556777777777643 44332
Q ss_pred ccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccc
Q 005634 444 DSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELR 523 (686)
Q Consensus 444 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 523 (686)
. ...+++|++|++++| +++.+++ +..+++|++|++++|. +..++ ....+++|+.|+++++
T Consensus 282 ~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 282 P-----LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN- 341 (466)
T ss_dssp G-----GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-
T ss_pred c-----ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-
Confidence 2 446788888888885 4666654 6678888888888874 44433 2457788888888888
Q ss_pred ccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeecc
Q 005634 524 NIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCS 577 (686)
Q Consensus 524 ~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 577 (686)
.++.+. ....+++|+.|++++| +++..++ +..+++|+.|++++|+
T Consensus 342 ~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 KVSDVS-----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred ccCCch-----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 566542 1346788888888888 4666643 5778888888888876
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.4e-27 Score=252.60 Aligned_cols=321 Identities=18% Similarity=0.221 Sum_probs=213.1
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCE
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEI 224 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~ 224 (686)
+++++++|++.++. ...+|. +..+++|++|++++|.++.+|. ++++++|++|++++|.+.....++++++|++
T Consensus 44 ~l~~l~~L~l~~~~----i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLG----IKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSC----CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred HhccccEEecCCCC----CccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCE
Confidence 46788888888887 344554 4778889999999988888876 8888899999998888887333888889999
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
|++++|.++.+|. ++++++|++|++++|. +..++. ++++++|++|++.++. . .+..++++++|+.
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~-~----------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV-T----------DLKPLANLTTLER 181 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESC-C----------CCGGGTTCTTCCE
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcc-c----------CchhhccCCCCCE
Confidence 9998888888875 8888899999988887 777764 7888888888886332 1 2234778888888
Q ss_pred EEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcc
Q 005634 305 LEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQ 384 (686)
Q Consensus 305 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 384 (686)
|++++|....++... .+++|+.|.+.++.-.
T Consensus 182 L~l~~n~l~~~~~l~------------------------------------------------~l~~L~~L~l~~n~l~- 212 (466)
T 1o6v_A 182 LDISSNKVSDISVLA------------------------------------------------KLTNLESLIATNNQIS- 212 (466)
T ss_dssp EECCSSCCCCCGGGG------------------------------------------------GCTTCSEEECCSSCCC-
T ss_pred EECcCCcCCCChhhc------------------------------------------------cCCCCCEEEecCCccc-
Confidence 888877654332111 1334444444433211
Q ss_pred cccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecC
Q 005634 385 NVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNS 464 (686)
Q Consensus 385 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 464 (686)
.+.+++.+++|+.|+++++. ++.+ .....+++|+.|+++++. +..+.. ...+++|++|++++|
T Consensus 213 ----~~~~~~~l~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 213 ----DITPLGILTNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLGAN 275 (466)
T ss_dssp ----CCGGGGGCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECCSS
T ss_pred ----ccccccccCCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECCCC
Confidence 11114567788888888764 2221 134566777777777753 333322 445677777777775
Q ss_pred CCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeE
Q 005634 465 QKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTT 544 (686)
Q Consensus 465 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 544 (686)
.++.+++ +..+++|++|++++|. +..++ ....+++|+.|+++++ .++.+.. ...+++|+.
T Consensus 276 -~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~ 335 (466)
T 1o6v_A 276 -QISNISP---LAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFN-NISDISP-----VSSLTKLQR 335 (466)
T ss_dssp -CCCCCGG---GTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSS-CCSCCGG-----GGGCTTCCE
T ss_pred -ccCcccc---ccCCCccCeEEcCCCc-ccCch---------hhcCCCCCCEEECcCC-cCCCchh-----hccCccCCE
Confidence 3555543 5667777777777653 33333 2456677777777777 4554322 235677777
Q ss_pred EEEecCCCcccccchhHHHhhccCcEEEEeecc
Q 005634 545 VIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCS 577 (686)
Q Consensus 545 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 577 (686)
|++++| +++.++ .+..+++|+.|++++|.
T Consensus 336 L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 336 LFFYNN-KVSDVS---SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred eECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence 777776 455552 34566777777777664
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-26 Score=254.95 Aligned_cols=409 Identities=16% Similarity=0.124 Sum_probs=227.6
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~ 204 (686)
..++++++++.+..+|... .++|++|++++|. ...++...|+++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNS----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSC----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCC----ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3478999999998888755 3899999999998 4456665668999999999999999876 66789999999999
Q ss_pred ccCCCCCC-cccccCCCCCCEEEccCCCCCCcc--hhhcCCCCCCEEeCcCCcCccccChhhhcCCCCC--cEEEecCCc
Q 005634 205 LDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLP--LEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRL--KELYMGDSF 279 (686)
Q Consensus 205 L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~ 279 (686)
+++|.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccc
Confidence 99999888 555 8999999999999988654 789999999999999987 55432 5566666 999998887
Q ss_pred c--ccccccCCCccchh-----------------------hhCCCCCccEEEEeecCCC--cCCC---cc-cccCccEEE
Q 005634 280 S--QWDKVKGGRNASLA-----------------------ELKGLSKLTTLEIQVRDAQ--ILPQ---DL-VFVELQRYR 328 (686)
Q Consensus 280 ~--~~~~~~~~~~~~~~-----------------------~l~~l~~L~~L~l~~~~~~--~~~~---~~-~l~~L~~L~ 328 (686)
+ ... .+..+. .+..+++|+.++++.|... .++. .+ .+.+|+.+.
T Consensus 181 l~~~~~-----~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 181 YHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp CCCCSS-----SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cccccc-----CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 6 211 111111 1223445555555554210 0000 01 233333333
Q ss_pred EEecCcCCc------cccCCCCccEEEEcCccCccchhhhhhHh-hhhccccEEEEccccCccc-cc-ccCCCCCCCCCC
Q 005634 329 ICIGEALGV------QRVDSETSRLVELCGLANVSSLLENYGMK-MLLKKTEDINLDELKGVQN-VV-HELDDGEGFPRL 399 (686)
Q Consensus 329 l~~~~~~~~------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~-~~l~~l~~l~~L 399 (686)
+........ ......+++.+++.++.-...++ .+.. ....+++.|.+.+.....- +. ..+..+-..++|
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip--~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID--REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC--CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc--chhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 322210000 00112256666665442100111 0000 0013344444433221110 00 000000011356
Q ss_pred ceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCc-hhhhh
Q 005634 400 KHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSF-SIAKN 478 (686)
Q Consensus 400 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~ 478 (686)
+.|++.++.-... .....+++|++|+++++. ++..... ..+.+++|++|+++++ +++.++.. ..+..
T Consensus 334 ~~L~l~~n~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 334 KMLSISDTPFIHM-------VCPPSPSSFTFLNFTQNV-FTDSVFQ---GCSTLKRLQTLILQRN-GLKNFFKVALMTKN 401 (562)
T ss_dssp SEEEEESSCCCCC-------CCCSSCCCCCEEECCSSC-CCTTTTT---TCCSCSSCCEEECCSS-CCCBTTHHHHTTTT
T ss_pred eEEEccCCCcccc-------cCccCCCCceEEECCCCc-cccchhh---hhcccCCCCEEECCCC-CcCCcccchhhhcC
Confidence 6666666542110 011456667777776643 3321111 1345677777777764 45554321 12456
Q ss_pred cCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccC-CCCeEEEEecCCCccccc
Q 005634 479 LLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCC-QNLTTVIVDGCDHMKYLF 557 (686)
Q Consensus 479 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l~ 557 (686)
+++|++|+++++.--..++ ......+++|++|+++++ .++..... .+ ++|+.|++++| +++.+|
T Consensus 402 l~~L~~L~l~~N~l~~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~------~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAY-------DRTCAWAESILVLNLSSN-MLTGSVFR------CLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp CTTCCEEECTTSCCBSCCS-------SCCCCCCTTCCEEECCSS-CCCGGGGS------SCCTTCSEEECCSS-CCCCCC
T ss_pred CCCCCEEECCCCcCCCccC-------hhhhcCcccCCEEECCCC-CCCcchhh------hhcCcCCEEECCCC-cCcccC
Confidence 6777777776655332233 112345567777777766 34321111 12 46777777776 566663
Q ss_pred chhHHHhhccCcEEEEeeccCcceE
Q 005634 558 SYSMVNSLLQLQYLEISYCSSMEGI 582 (686)
Q Consensus 558 ~~~~~~~l~~L~~L~i~~C~~l~~l 582 (686)
. .+..+++|++|+++++. ++.+
T Consensus 467 ~--~~~~l~~L~~L~L~~N~-l~~l 488 (562)
T 3a79_B 467 K--DVTHLQALQELNVASNQ-LKSV 488 (562)
T ss_dssp T--TTTSSCCCSEEECCSSC-CCCC
T ss_pred h--hhcCCCCCCEEECCCCC-CCCC
Confidence 3 23366777777776643 4443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.8e-26 Score=255.43 Aligned_cols=425 Identities=19% Similarity=0.174 Sum_probs=242.2
Q ss_pred CchhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 113 ADVKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 113 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
..+..+|. ....++++|++++|.+..+++. + ++++|++|++++|. ...+++..|+++++|++|+|++|.++.+
T Consensus 41 ~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 41 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp SCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 44556664 4567899999999999998864 3 89999999999998 5578887789999999999999999988
Q ss_pred ch-hhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCC--CcchhhcCCCCCCEEeCcCCcCccccChhhhc
Q 005634 191 PS-SLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVIS 265 (686)
Q Consensus 191 p~-~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 265 (686)
|. .|+++++|++|++++|.++. + ..++++++|++|++++|.++ .+|..++++++|++|++++|. ++.++.+.+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 75 58999999999999999988 4 57999999999999999987 467889999999999999998 7777655455
Q ss_pred CCCCCc----EEEecCCccccccccC----------------CCccchhhhCCCCCccEEEEeecCC-------------
Q 005634 266 KFSRLK----ELYMGDSFSQWDKVKG----------------GRNASLAELKGLSKLTTLEIQVRDA------------- 312 (686)
Q Consensus 266 ~l~~L~----~L~l~~~~~~~~~~~~----------------~~~~~~~~l~~l~~L~~L~l~~~~~------------- 312 (686)
.+.+++ .++++.+.+.....+. ........+..+..++...+.....
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 554433 5666665543211110 0000112233444444443332110
Q ss_pred -----------------Cc----CCCcc-cccCccEEEEEecCcCCcc-ccCCCCccEEEEcCccCccchhhhhhHhhhh
Q 005634 313 -----------------QI----LPQDL-VFVELQRYRICIGEALGVQ-RVDSETSRLVELCGLANVSSLLENYGMKMLL 369 (686)
Q Consensus 313 -----------------~~----~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 369 (686)
.. ..... ...+++.+........... ......++.+.+.++.- ..+. ...+
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~-----~~~l 348 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFP-----TLKL 348 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEE-SSCC-----CCBC
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccc-cCcC-----cccc
Confidence 00 00111 3345566655433221111 22345677777775531 1111 1134
Q ss_pred ccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCC
Q 005634 370 KKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTE 449 (686)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 449 (686)
+.++.+.+....... ......+++|+.|++++......... ........+|+.+++..+.. ......
T Consensus 349 ~~L~~l~l~~n~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~~~~~L~~L~~~~~~~-~~~~~~---- 415 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCC---SQSDFGTISLKYLDLSFNGV-ITMSSN---- 415 (635)
T ss_dssp TTCCEEEEESCCSCC-----BCCCCBCTTCCEEECCSSCCBEEEEC---CHHHHSCSCCCEEECCSCSE-EEECSC----
T ss_pred hhhhhcccccccCCC-----Ccccccccccccchhhcccccccccc---ccchhhhhhhhhhhcccccc-cccccc----
Confidence 566777666543221 11134577788887776542211100 00122345566666554331 111111
Q ss_pred CCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccccccccc
Q 005634 450 DQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIW 529 (686)
Q Consensus 450 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 529 (686)
...+++|+.+.+..+...... +...+..+++++.++++.+..-...+ .....+++|+.|+++++.....+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~--------~~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccccccchhhhhccccccc-cccccccccccccccccccccccccc--------cccccchhhhhhhhhhcccccccC
Confidence 334556666665554322222 22234455555555555433221111 123345555555555553333322
Q ss_pred ccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeec
Q 005634 530 PDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYC 576 (686)
Q Consensus 530 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 576 (686)
... ...+++|+.|++++| +++.+++ ..+.++++|++|+++++
T Consensus 487 ~~~---~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 487 PDI---FTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp CSC---CTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS
T ss_pred chh---hhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCC
Confidence 211 224555555555555 4555432 23445555555555554
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.9e-26 Score=238.00 Aligned_cols=147 Identities=20% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCE
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEI 224 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~ 224 (686)
++++|++|++.++. ...++. +..+++|++|++++|.++.+|. +.++++|++|++++|.++.++.++++++|++
T Consensus 42 ~l~~L~~L~l~~~~----i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEK----VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSC----CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred hcccccEEEEeCCc----cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCE
Confidence 34445555555544 222332 3455555566665555555554 5555666666666655555444555666666
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
|++++|.++.+|. +..+++|++|++++|.....++. ++++++|++|++++|.+. .+..++.+++|+.
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~----------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK----------DVTPIANLTDLYS 181 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC----------CCGGGGGCTTCSE
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC----------CchhhccCCCCCE
Confidence 6666665555544 55556666666665543444443 555666666666555443 1112445555555
Q ss_pred EEEeecC
Q 005634 305 LEIQVRD 311 (686)
Q Consensus 305 L~l~~~~ 311 (686)
|++++|.
T Consensus 182 L~l~~n~ 188 (347)
T 4fmz_A 182 LSLNYNQ 188 (347)
T ss_dssp EECTTSC
T ss_pred EEccCCc
Confidence 5555443
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=255.71 Aligned_cols=438 Identities=13% Similarity=0.079 Sum_probs=247.7
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCC-c-CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPK-R-LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS 192 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 192 (686)
+..+|.. ...++++|++++|.+..++. . ..+++|++|++++|. ...+++..|+++++|++|++++|.++.+|.
T Consensus 12 l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 12 LIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp CSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC----CCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred ccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCc----cCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 3344542 34889999999999988764 2 389999999999998 345555556999999999999999999998
Q ss_pred hhhcCCCCcEEEccCCCCCC---cccccCCCCCCEEEccCCCCCCcchhhcCCCCC--CEEeCcCCcC--ccccChhhhc
Q 005634 193 SLGRLINLQTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRL--QLLDLSDCRS--LVVIAPNVIS 265 (686)
Q Consensus 193 ~l~~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~~--l~~lp~~~l~ 265 (686)
. .+++|++|++++|.++. |..++++++|++|++++|.++. ..++.+++| ++|++++|.. ....|.. ++
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cc
Confidence 7 89999999999999875 5899999999999999999986 457788888 9999999873 3444443 55
Q ss_pred CCCC-CcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecC-------C-CcCCCcccccCccEEEEEecCcCC
Q 005634 266 KFSR-LKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRD-------A-QILPQDLVFVELQRYRICIGEALG 336 (686)
Q Consensus 266 ~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~-~~~~~~~~l~~L~~L~l~~~~~~~ 336 (686)
.+.. .-.+++++|.... ......+..+++|+.|++++|. . +.++....+.+|+.+.+..+....
T Consensus 162 ~l~~~~l~l~l~~n~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFH-------FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp TCCEEEEEEECCSSSCCC-------CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred ccccceEEEEeccCcchh-------hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 5442 1123333333220 0111223445555555555543 0 111111144445555443322100
Q ss_pred cc------ccCCCCccEEEEcCccCccchhhhhhHh----hhhccccEEEEccccCccccc-ccCCCCCCCCCCceEEee
Q 005634 337 VQ------RVDSETSRLVELCGLANVSSLLENYGMK----MLLKKTEDINLDELKGVQNVV-HELDDGEGFPRLKHLQVK 405 (686)
Q Consensus 337 ~~------~~~~~~l~~l~l~~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~l~~L~~L~l~ 405 (686)
.. .....+++.+.+.++.-...+ +.++. ..+++|+.+.+..+.. .+. ..+...-.-++|+.|+++
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQL--DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCC--CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCcc--ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 00 001224555555433110011 01100 2244455555443322 000 000000001457777777
Q ss_pred cCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCc-hhhhhcCCccE
Q 005634 406 LCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSF-SIAKNLLRLQK 484 (686)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~ 484 (686)
++.-. .+ .....+++|++|+++++. ++..... ..+.+++|++|++++|. ++.++.. ..+..+++|++
T Consensus 311 ~n~l~-~~------~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 311 GTRMV-HM------LCPSKISPFLHLDFSNNL-LTDTVFE---NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp SSCCC-CC------CCCSSCCCCCEEECCSSC-CCTTTTT---TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCE
T ss_pred CCccc-cc------cchhhCCcccEEEeECCc-cChhhhh---hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCE
Confidence 66421 11 011456777777777643 3331111 14567777777777753 4443211 23566777777
Q ss_pred EEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHh
Q 005634 485 VEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNS 564 (686)
Q Consensus 485 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 564 (686)
|+++++.--..++. .....+++|++|+++++ .++....... .++|+.|++++| +++.+|. .+..
T Consensus 379 L~Ls~N~l~~~l~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-----~~~L~~L~Ls~N-~l~~ip~--~~~~ 442 (520)
T 2z7x_B 379 LDISQNSVSYDEKK-------GDCSWTKSLLSLNMSSN-ILTDTIFRCL-----PPRIKVLDLHSN-KIKSIPK--QVVK 442 (520)
T ss_dssp EECCSSCCBCCGGG-------CSCCCCTTCCEEECCSS-CCCGGGGGSC-----CTTCCEEECCSS-CCCCCCG--GGGG
T ss_pred EECCCCcCCccccc-------chhccCccCCEEECcCC-CCCcchhhhh-----cccCCEEECCCC-cccccch--hhhc
Confidence 77777654332431 12345677777777777 3432211111 157777777777 5666633 3347
Q ss_pred hccCcEEEEeeccCcceEecCCCCccCCCCcccccccccccccccccccc
Q 005634 565 LLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLR 614 (686)
Q Consensus 565 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~ 614 (686)
+++|++|++++|. ++.+ +... +..+++|+.|++.+.+
T Consensus 443 l~~L~~L~L~~N~-l~~l--~~~~----------~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 443 LEALQELNVASNQ-LKSV--PDGI----------FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC-CCCC--CTTT----------TTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-CCcc--CHHH----------hccCCcccEEECcCCC
Confidence 7777777777763 5543 2211 1125677777766554
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.3e-26 Score=249.26 Aligned_cols=435 Identities=13% Similarity=0.098 Sum_probs=265.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
.+...++++++++. ...+|..+ .++|++|++++|.+..+| ..++++++|++|++++|.++. |..++++++
T Consensus 29 ~~~~~~~l~ls~~~----L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 29 SNELESMVDYSNRN----LTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ----CCEEECTTSC----CCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred ccCCCcEEEcCCCC----CccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 45666999999998 45688765 379999999999999876 589999999999999999988 578999999
Q ss_pred CCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccCh-hhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCC
Q 005634 222 LEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAP-NVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLS 300 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 300 (686)
|++|++++|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+. ...+..+.++
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~--------~~~~~~l~~L- 169 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR--------QLDLLPVAHL- 169 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC--------TTTTGGGTTS-
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc--------cCchhhhhhc-
Confidence 99999999999999987 89999999999998 777652 33899999999999999875 1234445555
Q ss_pred CccEEEEeecCC--Cc-CCCcc-cccCccEEEEEecC--cCCc----cccCCCCccEEEEcCccC-ccchhhhhhHhhhh
Q 005634 301 KLTTLEIQVRDA--QI-LPQDL-VFVELQRYRICIGE--ALGV----QRVDSETSRLVELCGLAN-VSSLLENYGMKMLL 369 (686)
Q Consensus 301 ~L~~L~l~~~~~--~~-~~~~~-~l~~L~~L~l~~~~--~~~~----~~~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~ 369 (686)
+|+.|++++|.. .. .|..+ .+. .+.+.+.... ...+ ......+++.+++.+... ...+.........+
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECC-EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred eeeEEEeecccccccccCcccccccC-cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 569999999876 32 23332 211 1223222111 1100 011223344444442100 00000000111112
Q ss_pred ---------------------------ccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCce-Eeeccccccc
Q 005634 370 ---------------------------KKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEIL-HIVGSVGRVR 421 (686)
Q Consensus 370 ---------------------------~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~-~~~~~~~~~~ 421 (686)
++|++|.+.++.-...+...+. ....++|+.|.+.+...-. .++. .....
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~~p~-~~~~~ 326 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFLFSK-EALYS 326 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCSSCH-HHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceeecCh-hhhhh
Confidence 2556666655432211111110 0011344444443322100 0000 00000
Q ss_pred cccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeecccc
Q 005634 422 RKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNK 501 (686)
Q Consensus 422 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 501 (686)
....++|++|+++++. +..+.. ...+++|++|+++++. ++...+ ..+.++++|++|+++++ .++.++.
T Consensus 327 ~~~~~~L~~L~l~~n~-~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~--- 394 (562)
T 3a79_B 327 VFAEMNIKMLSISDTP-FIHMVC-----PPSPSSFTFLNFTQNV-FTDSVF-QGCSTLKRLQTLILQRN-GLKNFFK--- 394 (562)
T ss_dssp HHHTCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTT-TTCCSCSSCCEEECCSS-CCCBTTH---
T ss_pred hhccCcceEEEccCCC-cccccC-----ccCCCCceEEECCCCc-cccchh-hhhcccCCCCEEECCCC-CcCCccc---
Confidence 0012457888887754 222111 2568899999999864 555322 24678899999999886 3443320
Q ss_pred ccccccccccCCcceeeccccccccc-ccccCCCccccCCCCeEEEEecCCCcccccchhHHHhh-ccCcEEEEeeccCc
Q 005634 502 NVRFSLQVSLPSLEELNLRELRNIKK-IWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSL-LQLQYLEISYCSSM 579 (686)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l 579 (686)
.......+++|+.|+++++ .++. ++... ...+++|+.|++++|. ++...+ ..+ ++|++|+++++ .+
T Consensus 395 --~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~----~~l~~~L~~L~L~~N-~l 462 (562)
T 3a79_B 395 --VALMTKNMSSLETLDVSLN-SLNSHAYDRT---CAWAESILVLNLSSNM-LTGSVF----RCLPPKVKVLDLHNN-RI 462 (562)
T ss_dssp --HHHTTTTCTTCCEEECTTS-CCBSCCSSCC---CCCCTTCCEEECCSSC-CCGGGG----SSCCTTCSEEECCSS-CC
T ss_pred --chhhhcCCCCCCEEECCCC-cCCCccChhh---hcCcccCCEEECCCCC-CCcchh----hhhcCcCCEEECCCC-cC
Confidence 0123567889999999998 5554 43322 3467899999999985 443212 233 68999999987 56
Q ss_pred ceEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCCC
Q 005634 580 EGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGCS 645 (686)
Q Consensus 580 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C~ 645 (686)
+.+ +.+.. .+++|+.|++.++ ++++++... +..+++|+.|+++++|
T Consensus 463 ~~i--p~~~~-----------~l~~L~~L~L~~N-~l~~l~~~~------~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 463 MSI--PKDVT-----------HLQALQELNVASN-QLKSVPDGV------FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCC--CTTTT-----------SSCCCSEEECCSS-CCCCCCTTS------TTTCTTCCCEECCSCC
T ss_pred ccc--Chhhc-----------CCCCCCEEECCCC-CCCCCCHHH------HhcCCCCCEEEecCCC
Confidence 654 33222 2688888887764 466666531 2578999999999876
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=7.1e-26 Score=243.00 Aligned_cols=380 Identities=15% Similarity=0.159 Sum_probs=189.1
Q ss_pred EEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-CC-chhhhcCCCCcEEEcc
Q 005634 129 AISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-SL-PSSLGRLINLQTLCLD 206 (686)
Q Consensus 129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~l~~l~~Lr~L~L~ 206 (686)
.++..++.+..+|. -.++|++|++++|. ...+++..|+++++|++|++++|.+. .+ |..++++++|++|+++
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNS----IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSC----CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCc----cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34445555555555 23566666666665 22333333466666666666666654 33 3456666666666666
Q ss_pred CCCCCC--cccccCCCCCCEEEccCCCCCC-cchh--hcCCCCCCEEeCcCCcCcccc-ChhhhcCCCCCcEEEecCCcc
Q 005634 207 GCGLKD--IAIVGQLKKLEILSLRDSKIKQ-LPLE--IGQLTRLQLLDLSDCRSLVVI-APNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 207 ~~~l~~--~~~i~~L~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~ 280 (686)
+|.++. |..++++++|++|++++|.++. .|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc
Confidence 666554 4566666666666666666653 3333 6666666666666665 4444 333356666666666666655
Q ss_pred ccccccCCCccchhhhCCC--CCccEEEEeecCCCcCCCcc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCcc
Q 005634 281 QWDKVKGGRNASLAELKGL--SKLTTLEIQVRDAQILPQDL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVS 357 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 357 (686)
.. .....+..+ .+|+.|+++.+....++... ...... ......+++.+++.+..-..
T Consensus 167 ~~--------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~------------~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 167 KS--------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG------------NPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp SC--------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC------------CTTTTCEEEEEECTTSCCCH
T ss_pred cc--------cChhhhhccccccccccccccCcccccchhhccccccc------------cccccceeeeEecCCCcccc
Confidence 41 111122222 35666666665544433221 000000 00011233334443221000
Q ss_pred chhhhhhHhh--hhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccc
Q 005634 358 SLLENYGMKM--LLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIY 435 (686)
Q Consensus 358 ~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 435 (686)
.. +..+.. ...+++.|.+.++........ ...++.+.. ........++|+.|++++
T Consensus 227 ~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 227 SM--AKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNFKDPDN----------------FTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HH--HHHHHHHTTTCCEEEEECTTCTTTSCCTT----CCSSCCCCT----------------TTTGGGTTSCCCEEECCS
T ss_pred cc--hhhhhccccccceeeEeeccccccccccc----hhhhccCcc----------------cccccccccCceEEEecC
Confidence 00 111111 124555555554432211000 000000000 000111235666666665
Q ss_pred cccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcc
Q 005634 436 LNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLE 515 (686)
Q Consensus 436 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 515 (686)
+. +..+.... .+.+++|++|++++|. ++.+++ ..+..+++|++|++++|. +..++ ......+++|+
T Consensus 285 n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~ 350 (455)
T 3v47_A 285 SK-IFALLKSV---FSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLE 350 (455)
T ss_dssp SC-CCEECTTT---TTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCC
T ss_pred cc-ccccchhh---cccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-cCCcC-------hhHhcCcccCC
Confidence 43 33222211 3456777777777653 555433 235667777777777763 33332 12345677777
Q ss_pred eeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeecc
Q 005634 516 ELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCS 577 (686)
Q Consensus 516 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 577 (686)
+|+++++ .++.+.... ...+++|++|++++| +++.+++ ..+..+++|++|++++++
T Consensus 351 ~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 351 VLDLSYN-HIRALGDQS---FLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSS-CCCEECTTT---TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cccccChhh---ccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 7777777 555543322 235677777777776 5666643 345677777777777765
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.2e-24 Score=244.13 Aligned_cols=477 Identities=14% Similarity=0.144 Sum_probs=268.1
Q ss_pred EEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccC
Q 005634 129 AISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDG 207 (686)
Q Consensus 129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~ 207 (686)
..+-++.++..+|..+ -+++++|++++|. ...+++..|.++++|++|+|++|.++.+|+ +|+++++|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 3444555667787654 2489999999998 567887778999999999999999998865 689999999999999
Q ss_pred CCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccc--cChhhhcCCCCCcEEEecCCcccc
Q 005634 208 CGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVV--IAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 208 ~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
|+++. | ..|++|++|++|++++|.++.+|.. ++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 99988 5 6789999999999999999998864 8999999999999998 654 3554 7899999999999998752
Q ss_pred ccccCCCccchhhhCCCCC-ccEEEEeecCCCcCCCcc-cccCccEEEEEecCcC-Cc---cccCCCCc-----------
Q 005634 283 DKVKGGRNASLAELKGLSK-LTTLEIQVRDAQILPQDL-VFVELQRYRICIGEAL-GV---QRVDSETS----------- 345 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~-~~---~~~~~~~l----------- 345 (686)
. ....+..+.+++. +..++++.+.+..++... ....++.+.+..+... .. .......+
T Consensus 188 ~-----~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 188 I-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp E-----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred c-----ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence 1 1223444444442 335666666555544332 2222333333221100 00 00011111
Q ss_pred -------------------cEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeec
Q 005634 346 -------------------RLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKL 406 (686)
Q Consensus 346 -------------------~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 406 (686)
....+....................+++.+.+.+..... +.......+|+.|++.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGWQHLELVN 337 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-----CGGGGSCCCCSEEEEES
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-----ccccccchhhhhhhccc
Confidence 111111110000000011111223344444444332111 11123345566666655
Q ss_pred CCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccc-cCchhhhhcCCccEE
Q 005634 407 CSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQL-FSFSIAKNLLRLQKV 485 (686)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~l~~L~~L 485 (686)
+..- .+ ....++.|+.+.+.+... ... .. ...+++|+.|++++.. +... ........+.+|+.+
T Consensus 338 ~~~~-~~-------~~~~l~~L~~l~l~~n~~-~~~----~~-~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 338 CKFG-QF-------PTLKLKSLKRLTFTSNKG-GNA----FS-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp CEES-SC-------CCCBCTTCCEEEEESCCS-CCB----CC-CCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEE
T ss_pred cccc-Cc-------CcccchhhhhcccccccC-CCC----cc-cccccccccchhhccc-cccccccccchhhhhhhhhh
Confidence 4211 00 122344444444443221 000 00 2234555555555432 1111 111122334444444
Q ss_pred E-----------------------EeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCC
Q 005634 486 E-----------------------VASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNL 542 (686)
Q Consensus 486 ~-----------------------i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 542 (686)
+ +..+......+ ......+++|+.++++++ .+..+.... ...+++|
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-------~~~~~~l~~l~~l~ls~n-~l~~~~~~~---~~~~~~L 471 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHT-HTRVAFNGI---FNGLSSL 471 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-------SCTTTTCTTCCEEECTTS-CCEECCTTT---TTTCTTC
T ss_pred hccccccccccccccccccccchhhhhcccccccc-------cccccccccccccccccc-ccccccccc---cccchhh
Confidence 4 43332222111 123345566667776665 444332222 3467889
Q ss_pred eEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCcccccccccccccccccccccccccccC
Q 005634 543 TTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANT 622 (686)
Q Consensus 543 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~ 622 (686)
+.|+++++.....+.+ ..+..+++|++|++++| +++.+.. .. +..+++|+.|.+.++ ++++++..
T Consensus 472 ~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~~-~~-----------f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSP-TA-----------FNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp CEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT-TT-----------TTTCTTCCEEECTTS-CCCBCCCG
T ss_pred hhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcCh-HH-----------HcCCCCCCEEECCCC-cCCCCChh
Confidence 9999998876665533 45678899999999987 4666632 11 112577777776664 45555433
Q ss_pred CcccccccccCCCcceeeecCCCCceeeccc---cCCCCCCCCCCCCCccc
Q 005634 623 GHIHSDLVVEFPSLLNLNIDGCSNMLRFIST---SSPEDTNHSEMQPPPLF 670 (686)
Q Consensus 623 ~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~---~~~~~~~~~~~~~~~~~ 670 (686)
. +..+++|+.|+++++. |+.++.. ++|......++..-|+-
T Consensus 537 ~------~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 537 P------YKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp G------GTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred H------HhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 2 3467888888888773 4444433 33444555555544443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.1e-24 Score=224.92 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=147.2
Q ss_pred CCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 123 IQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
..+++++++++++.+..++....+++|++|++++|. ...++. +.++++|++|++++|.++.+| .+.++++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~----i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ----ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCc----cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 367799999999999888876689999999999998 445655 689999999999999999886 5899999999
Q ss_pred EEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 203 LCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 203 L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
|++++|.+.....+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++++++|++|++++|.+.
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc-
Confidence 9999999988444999999999999999544444559999999999999998 777776 899999999999999865
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCcC
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 315 (686)
.+..+..+++|+.|+++++....+
T Consensus 191 ---------~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 191 ---------DISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ---------ccccccCCCccceeecccCCCCCC
Confidence 233378888999999987765543
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.1e-25 Score=235.95 Aligned_cols=344 Identities=17% Similarity=0.111 Sum_probs=229.6
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCc-------------cEEEecCccCCC
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEEL-------------KVLSLNRIHFSS 189 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-------------r~L~l~~~~~~~ 189 (686)
...++.+++++|.++.+|..+ ++++|++|++++|. ..+.+|.++ +++++| ++|++++|.++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~---~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE---WERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ------------------------CCHHHHHHHHHH---HHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc---ccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 567899999999999999877 89999999999998 566778775 666654 999999999998
Q ss_pred CchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCC
Q 005634 190 LPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFS 268 (686)
Q Consensus 190 lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 268 (686)
+|.. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++|. ++.+| . +++++
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~ 153 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSS 153 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCT
T ss_pred CCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCC
Confidence 8863 4789999999999888 543 47899999999998877642 2689999999987 78888 3 89999
Q ss_pred CCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEE
Q 005634 269 RLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLV 348 (686)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 348 (686)
+|++|++++|.+. ..+. ...+|++|++++|.+..+|....+++|+.|++..+.....
T Consensus 154 ~L~~L~l~~N~l~------~lp~------~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l----------- 210 (454)
T 1jl5_A 154 FLKIIDVDNNSLK------KLPD------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL----------- 210 (454)
T ss_dssp TCCEEECCSSCCS------CCCC------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-----------
T ss_pred CCCEEECCCCcCc------ccCC------CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC-----------
Confidence 9999999999765 1111 1248999999999888877434777777776643321111
Q ss_pred EEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcc
Q 005634 349 ELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLL 428 (686)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 428 (686)
....++|+.|++.++.- +. ++.++.+++|++|+++++. ++.+ ...+++|
T Consensus 211 -----------------~~~~~~L~~L~l~~n~l-~~----lp~~~~l~~L~~L~l~~N~-l~~l--------~~~~~~L 259 (454)
T 1jl5_A 211 -----------------PDLPLSLESIVAGNNIL-EE----LPELQNLPFLTTIYADNNL-LKTL--------PDLPPSL 259 (454)
T ss_dssp -----------------CCCCTTCCEEECCSSCC-SS----CCCCTTCTTCCEEECCSSC-CSSC--------CSCCTTC
T ss_pred -----------------CCCcCcccEEECcCCcC-Cc----ccccCCCCCCCEEECCCCc-CCcc--------ccccccc
Confidence 01124677777766532 22 2225678899999998764 2222 1235789
Q ss_pred cEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccc
Q 005634 429 ESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQ 508 (686)
Q Consensus 429 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 508 (686)
+.|+++++. ++.++. .+++|++|++++|. ++.++.. .++|+.|+++++. +..++
T Consensus 260 ~~L~l~~N~-l~~l~~-------~~~~L~~L~ls~N~-l~~l~~~-----~~~L~~L~l~~N~-l~~i~----------- 313 (454)
T 1jl5_A 260 EALNVRDNY-LTDLPE-------LPQSLTFLDVSENI-FSGLSEL-----PPNLYYLNASSNE-IRSLC----------- 313 (454)
T ss_dssp CEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-CSEESCC-----CTTCCEEECCSSC-CSEEC-----------
T ss_pred CEEECCCCc-ccccCc-------ccCcCCEEECcCCc-cCcccCc-----CCcCCEEECcCCc-CCccc-----------
Confidence 999998754 554422 24889999998864 6665431 2689999998764 44333
Q ss_pred cccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeecc
Q 005634 509 VSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCS 577 (686)
Q Consensus 509 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 577 (686)
...++|++|+++++ .++.++. .+++|+.|++++| +++.+|. .+++|++|+++++.
T Consensus 314 ~~~~~L~~L~Ls~N-~l~~lp~-------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 314 DLPPSLEELNVSNN-KLIELPA-------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred CCcCcCCEEECCCC-ccccccc-------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 12258999999987 5665422 2588999999988 6777754 47889999998865
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.7e-24 Score=230.50 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=124.6
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
.+++++|++++|.+..+|....+++|++|++++|.+ ..+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l----~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI----TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC----SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC----CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 567888888888887777545788888888888873 3344 477888888888888887775 7788888888
Q ss_pred EccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 204 CLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 204 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
++++|.++..+ ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~-- 183 (457)
T 3bz5_A 112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT-- 183 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC--
T ss_pred ECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc--
Confidence 88888877732 778888888888888888774 7788888888888886566663 677888888888888765
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCCCcC
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 315 (686)
. +. ++.+++|+.|++++|.+..+
T Consensus 184 ----~----l~-l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 184 ----E----LD-VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp ----C----CC-CTTCTTCCEEECCSSCCSCC
T ss_pred ----e----ec-cccCCCCCEEECcCCcCCee
Confidence 1 11 66777788888877765543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.8e-25 Score=235.90 Aligned_cols=376 Identities=16% Similarity=0.172 Sum_probs=236.6
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC---cccccCCCCCCEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD---IAIVGQLKKLEIL 225 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L 225 (686)
+.++..++. ...+|. + .++|++|++++|.++.+ |..++++++|++|++++|.+.. +..++++++|++|
T Consensus 13 ~~~~c~~~~----l~~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRG----LHQVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSC----CSSCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cccCcCCCC----cccCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 345666655 556676 2 37899999999999876 7789999999999999999764 4779999999999
Q ss_pred EccCCCCCCc-chhhcCCCCCCEEeCcCCcCccc-c-ChhhhcCCCCCcEEEecCCccccccccCCCccchhh-hCCCCC
Q 005634 226 SLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVV-I-APNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAE-LKGLSK 301 (686)
Q Consensus 226 ~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~-l-p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~l~~ 301 (686)
++++|.++.+ |..++++++|++|++++|. +.. + +...++++++|++|++++|.+.. ..+.. ++++++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~~l~~ 155 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKK--------IQPASFFLNMRR 155 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCS--------CCCCGGGGGCTT
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCc--------cCcccccCCCCc
Confidence 9999999966 7789999999999999998 654 2 22337899999999999998751 11223 788899
Q ss_pred ccEEEEeecCCCcCCCc-c-cc--cCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhh------hhHhhhhcc
Q 005634 302 LTTLEIQVRDAQILPQD-L-VF--VELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLEN------YGMKMLLKK 371 (686)
Q Consensus 302 L~~L~l~~~~~~~~~~~-~-~l--~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~------~~~~~~~~~ 371 (686)
|+.|++++|.+..++.. + .+ .+|+.+ .+.+..- ..+... ......+++
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L---------------------~l~~n~l-~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLL---------------------RLSSITL-QDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEE---------------------ECTTCBC-TTCSTTCTTHHHHCCTTTTCE
T ss_pred ccEEeCCCCcccccChhhhhcccccccccc---------------------ccccCcc-cccchhhccccccccccccce
Confidence 99999999986655332 2 11 233333 3332210 000000 000011234
Q ss_pred ccEEEEccccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCC
Q 005634 372 TEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQ 451 (686)
Q Consensus 372 L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 451 (686)
|+.|++.++.-.......+......++|+.|++.++....... ....++ ......+. ..
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~~--------------~~~~~~~~-~~ 272 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------GHTNFK--------------DPDNFTFK-GL 272 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------TCCSSC--------------CCCTTTTG-GG
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeecccccccccc------chhhhc--------------cCcccccc-cc
Confidence 4445444433221111111101112344444444432111000 000000 00000010 12
Q ss_pred cCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccccccccccc
Q 005634 452 SFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPD 531 (686)
Q Consensus 452 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 531 (686)
..++|++|+++++. ++..++ ..+..+++|++|++++|.- ..++ ......+++|++|+++++ .++.+...
T Consensus 273 ~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 341 (455)
T 3v47_A 273 EASGVKTCDLSKSK-IFALLK-SVFSHFTDLEQLTLAQNEI-NKID-------DNAFWGLTHLLKLNLSQN-FLGSIDSR 341 (455)
T ss_dssp TTSCCCEEECCSSC-CCEECT-TTTTTCTTCCEEECTTSCC-CEEC-------TTTTTTCTTCCEEECCSS-CCCEECGG
T ss_pred cccCceEEEecCcc-ccccch-hhcccCCCCCEEECCCCcc-cccC-------hhHhcCcccCCEEECCCC-ccCCcChh
Confidence 34789999999965 555533 2578899999999988753 3433 135567899999999998 66665333
Q ss_pred CCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcceEecCCCCccCCCCccccccccccccccccc
Q 005634 532 HNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQ 611 (686)
Q Consensus 532 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~ 611 (686)
. ...+++|++|++++| +++.+++ ..+..+++|++|+++++. ++.+. ... +..+++|+.|++.
T Consensus 342 ~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~--~~~----------~~~l~~L~~L~l~ 403 (455)
T 3v47_A 342 M---FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LKSVP--DGI----------FDRLTSLQKIWLH 403 (455)
T ss_dssp G---GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCC--TTT----------TTTCTTCCEEECC
T ss_pred H---hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-cccCC--HhH----------hccCCcccEEEcc
Confidence 2 346899999999998 5677644 456789999999999864 55542 111 1226788888877
Q ss_pred ccc
Q 005634 612 WLR 614 (686)
Q Consensus 612 ~c~ 614 (686)
+++
T Consensus 404 ~N~ 406 (455)
T 3v47_A 404 TNP 406 (455)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-24 Score=228.05 Aligned_cols=154 Identities=13% Similarity=0.226 Sum_probs=122.0
Q ss_pred CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCC
Q 005634 144 LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLK 220 (686)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~ 220 (686)
..++++++|++.++. ...+|..++.++++|++|++++|.+..++. .++.+++|++|++++|.++. +..+++++
T Consensus 42 ~~l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCc----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 467888888888876 567888878888888999988888887654 78888888999998888777 46688888
Q ss_pred CCCEEEccCCCCCCcchhh-cCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCC
Q 005634 221 KLEILSLRDSKIKQLPLEI-GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGL 299 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 299 (686)
+|++|++++|.++.+|..+ +++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l 185 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLI 185 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-----------cccccc
Confidence 8999999888888888774 888888999888887 777766557888888888888887651 135567
Q ss_pred CCccEEEEeecCCC
Q 005634 300 SKLTTLEIQVRDAQ 313 (686)
Q Consensus 300 ~~L~~L~l~~~~~~ 313 (686)
++|+.|++++|...
T Consensus 186 ~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 186 PSLFHANVSYNLLS 199 (390)
T ss_dssp TTCSEEECCSSCCS
T ss_pred cccceeeccccccc
Confidence 78888888877544
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.6e-24 Score=227.70 Aligned_cols=169 Identities=24% Similarity=0.278 Sum_probs=94.7
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~ 206 (686)
+.++.+++.+..+|..+ .+++++|++++|. ...++...|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCc----cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 34555666666666543 3466666666665 3334443446666666666666666544 4556666666666666
Q ss_pred CCCCCC-c-ccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 207 GCGLKD-I-AIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 207 ~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
+|.++. | ..++++++|++|++++|.++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-- 165 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-- 165 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS--
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc--
Confidence 666555 3 3456666666666666666543 3445666666666666655 44444433556666666666665543
Q ss_pred cccCCCccchhhhCCCCCccEEEEeec
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVR 310 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~ 310 (686)
......+..+++|+.|+++.|
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESC
T ss_pred ------ccChhHhcccCCCcEEeCCCC
Confidence 111223455555555555543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=227.30 Aligned_cols=152 Identities=22% Similarity=0.344 Sum_probs=113.0
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILS 226 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~ 226 (686)
+.++..++. ...+|..+ ..++++|++++|.++.+ |..+.++++|++|++++|.++. |..++++++|++|+
T Consensus 14 ~~v~c~~~~----l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKR----FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TEEECCSCC----CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCC----cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 456666655 45566644 35788888888888776 4578888888888888888776 57788888888888
Q ss_pred ccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEE
Q 005634 227 LRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTL 305 (686)
Q Consensus 227 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 305 (686)
+++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. ......+..+++|+.|
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV--------YISHRAFSGLNSLEQL 157 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCC--------EECTTSSTTCTTCCEE
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccc--------eeChhhccCCCCCCEE
Confidence 888888888765 6788888888888887 66665545788888888888888764 1223456778888888
Q ss_pred EEeecCCCcCCC
Q 005634 306 EIQVRDAQILPQ 317 (686)
Q Consensus 306 ~l~~~~~~~~~~ 317 (686)
++++|.+..++.
T Consensus 158 ~l~~n~l~~~~~ 169 (477)
T 2id5_A 158 TLEKCNLTSIPT 169 (477)
T ss_dssp EEESCCCSSCCH
T ss_pred ECCCCcCcccCh
Confidence 888776655543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.3e-24 Score=234.08 Aligned_cols=304 Identities=12% Similarity=0.141 Sum_probs=191.7
Q ss_pred CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC-c-ccccCCC
Q 005634 144 LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD-I-AIVGQLK 220 (686)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~ 220 (686)
..+++++.+++.++. ...+|..+|+++++|++|++++|.+..+|. .++.+++|++|++++|.++. + ..+++++
T Consensus 48 l~l~~l~~l~l~~~~----l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGGCCCSEEEESSCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCceEEEeeCCC----CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 356788888888876 567788777888888888888888876654 78888888888888888777 3 5678888
Q ss_pred CCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCC
Q 005634 221 KLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGL 299 (686)
Q Consensus 221 ~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 299 (686)
+|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l 191 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLI 191 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhh
Confidence 888888888888888776 4788888888888887 666666557888888888888887651 125566
Q ss_pred CCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEcc
Q 005634 300 SKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDE 379 (686)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 379 (686)
++|+.|++++|.+..++ ...+|+.|++..+........ ..++|+.|.+.+
T Consensus 192 ~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~---------------------------~~~~L~~L~L~~ 241 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGP---------------------------VNVELTILKLQH 241 (597)
T ss_dssp TTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECS---------------------------CCSCCCEEECCS
T ss_pred hhhhhhhcccCcccccc---CCchhheeeccCCcccccccc---------------------------cCCCCCEEECCC
Confidence 77888888877554322 122344443322211110000 123455555554
Q ss_pred ccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEE
Q 005634 380 LKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRII 459 (686)
Q Consensus 380 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 459 (686)
+.-. . ...+..+++|+.|+++++.- ..+.. .....+++|+.|+++++ .++.++.. ...+|+|+.|
T Consensus 242 n~l~-~----~~~l~~l~~L~~L~Ls~N~l-~~~~~----~~~~~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L 306 (597)
T 3oja_B 242 NNLT-D----TAWLLNYPGLVEVDLSYNEL-EKIMY----HPFVKMQRLERLYISNN-RLVALNLY----GQPIPTLKVL 306 (597)
T ss_dssp SCCC-C----CGGGGGCTTCSEEECCSSCC-CEEES----GGGTTCSSCCEEECTTS-CCCEEECS----SSCCTTCCEE
T ss_pred CCCC-C----ChhhccCCCCCEEECCCCcc-CCCCH----HHhcCccCCCEEECCCC-CCCCCCcc----cccCCCCcEE
Confidence 4321 1 11245667777777776642 22211 12445667777777663 34444332 3446777777
Q ss_pred EEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccc
Q 005634 460 KVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLREL 522 (686)
Q Consensus 460 ~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 522 (686)
++++| .++.+|+ .+..+++|+.|++++|.- ..+ ....+++|+.|+++++
T Consensus 307 ~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~l-~~~----------~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 307 DLSHN-HLLHVER--NQPQFDRLENLYLDHNSI-VTL----------KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp ECCSS-CCCCCGG--GHHHHTTCSEEECCSSCC-CCC----------CCCTTCCCSEEECCSS
T ss_pred ECCCC-CCCccCc--ccccCCCCCEEECCCCCC-CCc----------ChhhcCCCCEEEeeCC
Confidence 77765 3555554 356667777777766542 222 2345666666666665
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.4e-23 Score=223.36 Aligned_cols=305 Identities=18% Similarity=0.143 Sum_probs=198.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCE
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEI 224 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~ 224 (686)
++++|++|++++|. ...+| + ++.+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++
T Consensus 40 ~l~~L~~L~Ls~n~----l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSS----ITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSC----CCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred HcCCCCEEEccCCC----cccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 67889999999887 33455 3 478899999999999888886 788899999999999888843 888899999
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
|++++|.++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|... . .+ .++.+++|+.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~--------~-~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI--------T-KL-DVTPQTQLTT 174 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC--------C-CC-CCTTCTTCCE
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc--------c-cc-ccccCCcCCE
Confidence 999999888876 8888999999999887 77775 688899999999888532 0 11 4677888888
Q ss_pred EEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcc
Q 005634 305 LEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQ 384 (686)
Q Consensus 305 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 384 (686)
|++++|.+..+| ...+ ++|+.|.+.++.- +
T Consensus 175 L~ls~n~l~~l~-l~~l------------------------------------------------~~L~~L~l~~N~l-~ 204 (457)
T 3bz5_A 175 LDCSFNKITELD-VSQN------------------------------------------------KLLNRLNCDTNNI-T 204 (457)
T ss_dssp EECCSSCCCCCC-CTTC------------------------------------------------TTCCEEECCSSCC-S
T ss_pred EECCCCccceec-cccC------------------------------------------------CCCCEEECcCCcC-C
Confidence 888887665443 1122 2233333332211 1
Q ss_pred cccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecC
Q 005634 385 NVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNS 464 (686)
Q Consensus 385 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 464 (686)
.++ ++.+++|+.|+++++. ++.+ +...+++|+.|+++++. ++.++ .+.+++|+.|.+++
T Consensus 205 ----~~~-l~~l~~L~~L~Ls~N~-l~~i-------p~~~l~~L~~L~l~~N~-l~~~~------~~~l~~L~~L~l~~- 263 (457)
T 3bz5_A 205 ----KLD-LNQNIQLTFLDCSSNK-LTEI-------DVTPLTQLTYFDCSVNP-LTELD------VSTLSKLTTLHCIQ- 263 (457)
T ss_dssp ----CCC-CTTCTTCSEEECCSSC-CSCC-------CCTTCTTCSEEECCSSC-CSCCC------CTTCTTCCEEECTT-
T ss_pred ----eec-cccCCCCCEEECcCCc-cccc-------CccccCCCCEEEeeCCc-CCCcC------HHHCCCCCEEeccC-
Confidence 111 4567788888887764 2222 24566777777777643 44332 34566777666543
Q ss_pred CCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCC----ccccCC
Q 005634 465 QKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQ----GMYCCQ 540 (686)
Q Consensus 465 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~ 540 (686)
.+|+.|++++|..+..++ ...+++|+.|++++|..+..++..... ....++
T Consensus 264 ---------------n~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 264 ---------------TDLLEIDLTHNTQLIYFQ----------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp ---------------CCCSCCCCTTCTTCCEEE----------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred ---------------CCCCEEECCCCccCCccc----------ccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 245566666776666654 245788888888888766655421100 022344
Q ss_pred CCeEEEEecCCCcccccchhHHHhhccCcEEEEee
Q 005634 541 NLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISY 575 (686)
Q Consensus 541 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 575 (686)
+|+.|+++++ +++.++ +..+++|+.|++++
T Consensus 319 ~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 319 KLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN 348 (457)
T ss_dssp TCCEEECTTC-CCSCCC----CTTCTTCSEEECCS
T ss_pred cCCEEECCCC-cccccc----cccCCcCcEEECCC
Confidence 5555555554 344431 34455555555544
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-23 Score=220.82 Aligned_cols=134 Identities=14% Similarity=0.223 Sum_probs=116.1
Q ss_pred CCCCccEEEecCccCCCCchh-hhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEE
Q 005634 173 GTEELKVLSLNRIHFSSLPSS-LGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLL 248 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L 248 (686)
.+.++++|+++++.+..+|.. +.++++|++|++++|.++. + ..++.+++|++|++++|.++.+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999876 6899999999999999888 4 689999999999999999997754 58999999999
Q ss_pred eCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcC
Q 005634 249 DLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 249 ~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 315 (686)
++++|. ++.+|.+.++++++|++|++++|.+. ......++.+++|+.|++++|.+..+
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--------BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccC--------ccChhhccCCCCCCEEECCCCcCCcc
Confidence 999998 89999886689999999999999875 12234578889999999998765543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.3e-22 Score=224.60 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=201.2
Q ss_pred CCCCccEEEecCccCCCCchh-hhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEE
Q 005634 173 GTEELKVLSLNRIHFSSLPSS-LGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLL 248 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L 248 (686)
.+.++++++++++.+..+|.. ++++++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999998875 6889999999999999988 4 6899999999999999999987765 6999999999
Q ss_pred eCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEE
Q 005634 249 DLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYR 328 (686)
Q Consensus 249 ~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 328 (686)
++++|. ++.+|...++++++|++|++++|.+. ...+..++.+++|+.|++++|.+..++. ..+.+|+.+.
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHAN 198 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--------BCCTTTTTTCTTCCEEECTTSCCSBCCG-GGCTTCSEEE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC--------CCChhhhhcCCcCcEEECcCCCCCCcCh-hhhhhhhhhh
Confidence 999998 88999886799999999999999875 2233468889999999999887665431 1223333332
Q ss_pred EEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcccccccCCCCCCCCCCceEEeecCC
Q 005634 329 ICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKLCS 408 (686)
Q Consensus 329 l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 408 (686)
+.++.- .. +...++|+.|+++++.
T Consensus 199 ------------------------------------------------l~~n~l-----~~---l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 199 ------------------------------------------------VSYNLL-----ST---LAIPIAVEELDASHNS 222 (597)
T ss_dssp ------------------------------------------------CCSSCC-----SE---EECCTTCSEEECCSSC
T ss_pred ------------------------------------------------cccCcc-----cc---ccCCchhheeeccCCc
Confidence 222110 00 1123456666666553
Q ss_pred CceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEe
Q 005634 409 EILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVA 488 (686)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 488 (686)
+..+. ...+++|+.|+++++. ++.... .+.+++|+.|+++++. ++..++ ..+..+++|+.|+++
T Consensus 223 -l~~~~-------~~~~~~L~~L~L~~n~-l~~~~~-----l~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 223 -INVVR-------GPVNVELTILKLQHNN-LTDTAW-----LLNYPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYIS 286 (597)
T ss_dssp -CCEEE-------CSCCSCCCEEECCSSC-CCCCGG-----GGGCTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECT
T ss_pred -ccccc-------cccCCCCCEEECCCCC-CCCChh-----hccCCCCCEEECCCCc-cCCCCH-HHhcCccCCCEEECC
Confidence 22221 2233566666666543 332211 4456677777777643 444433 235566777777776
Q ss_pred ecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccC
Q 005634 489 SCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQL 568 (686)
Q Consensus 489 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 568 (686)
+| .+..++ .....+++|+.|+++++ .++.++.. ...+++|+.|++++| .++.++ +..+++|
T Consensus 287 ~N-~l~~l~--------~~~~~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L 347 (597)
T 3oja_B 287 NN-RLVALN--------LYGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHN-SIVTLK----LSTHHTL 347 (597)
T ss_dssp TS-CCCEEE--------CSSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSS-CCCCCC----CCTTCCC
T ss_pred CC-CCCCCC--------cccccCCCCcEEECCCC-CCCccCcc----cccCCCCCEEECCCC-CCCCcC----hhhcCCC
Confidence 64 334443 13345667777777776 45444322 234667777777776 355542 2456677
Q ss_pred cEEEEeecc
Q 005634 569 QYLEISYCS 577 (686)
Q Consensus 569 ~~L~i~~C~ 577 (686)
+.|++++++
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 777776654
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=3.3e-23 Score=230.18 Aligned_cols=381 Identities=14% Similarity=0.118 Sum_probs=214.1
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCC-CccEEEecCcc-CC--CCchhhhcCCCCcEEEccCCCCCC--c----c
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTE-ELKVLSLNRIH-FS--SLPSSLGRLINLQTLCLDGCGLKD--I----A 214 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~-~~--~lp~~l~~l~~Lr~L~L~~~~l~~--~----~ 214 (686)
.+++|++|++++|. .....+..+...+. +|++|++++|. +. .++....++++|++|++++|.+.+ . .
T Consensus 110 ~~~~L~~L~L~~~~---i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI---VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred hCCCCCeEEeeccE---ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 57888888888876 23333333322133 48888888875 22 344445578888888888887654 1 2
Q ss_pred cccCCCCCCEEEccCCCCC-----CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCC
Q 005634 215 IVGQLKKLEILSLRDSKIK-----QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGR 289 (686)
Q Consensus 215 ~i~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 289 (686)
.+..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|.. ++++++|++|++++..... ..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~-----~~ 259 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDI-----GM 259 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCT-----TC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhccccccccc-----ch
Confidence 3456788888888888775 345556778888888888877 6677755 7888888888887532210 11
Q ss_pred ccchhhhCCCCCccEEEEeecCCCcCCCcc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhh
Q 005634 290 NASLAELKGLSKLTTLEIQVRDAQILPQDL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKML 368 (686)
Q Consensus 290 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 368 (686)
......+..+++|+.|++.......++... .+++|+.| ++.++. ... .........
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L---------------------~Ls~~~-l~~-~~~~~~~~~ 316 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL---------------------DLLYAL-LET-EDHCTLIQK 316 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE---------------------EETTCC-CCH-HHHHHHHTT
T ss_pred HHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE---------------------ecCCCc-CCH-HHHHHHHHh
Confidence 233455677778888877655444444433 33444444 444331 010 111122344
Q ss_pred hccccEEEEccccCcccccccCCCCCCCCCCceEEeec----------CCCceEeeccccccccccCCcccEeecccccc
Q 005634 369 LKKTEDINLDELKGVQNVVHELDDGEGFPRLKHLQVKL----------CSEILHIVGSVGRVRRKVFPLLESLSLIYLNN 438 (686)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 438 (686)
+++|+.|.+.++-....+ ..+ ...+++|++|++.+ |..+... ........+++|++|.+ .|..
T Consensus 317 ~~~L~~L~L~~~~~~~~l-~~~--~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~---~~~~l~~~~~~L~~L~l-~~~~ 389 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGL-EVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQR---GLIALAQGCQELEYMAV-YVSD 389 (592)
T ss_dssp CTTCCEEEEEGGGHHHHH-HHH--HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH---HHHHHHHHCTTCSEEEE-EESC
T ss_pred CcCCCEEeccCccCHHHH-HHH--HHhCCCCCEEEeecCccccccccccCccCHH---HHHHHHhhCccCeEEEe-ecCC
Confidence 566666666522111111 111 23466777777774 4433211 00001234677777777 3444
Q ss_pred chhhcccCCCCCCcCCCcCEEEEec---CCCCccccCc----hhhhhcCCccEEEEeeccc-ceeeeccccccccccccc
Q 005634 439 LETICDSQLTEDQSFSNLRIIKVRN---SQKLKQLFSF----SIAKNLLRLQKVEVASCYK-LEMIFGKNKNVRFSLQVS 510 (686)
Q Consensus 439 l~~~~~~~~~~~~~l~~L~~L~l~~---c~~l~~l~~~----~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~~~~~~~ 510 (686)
++......+ ...+++|++|++.+ |+.++..|.. ..+.++++|++|+++.|.. +.... .......
T Consensus 390 l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~------~~~~~~~ 461 (592)
T 3ogk_B 390 ITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG------LSYIGQY 461 (592)
T ss_dssp CCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH------HHHHHHS
T ss_pred ccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH------HHHHHHh
Confidence 443221111 12367788888773 5566654321 1245677888888877664 22211 0011234
Q ss_pred cCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeecc
Q 005634 511 LPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCS 577 (686)
Q Consensus 511 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 577 (686)
+++|+.|++++| .+++..... ....+++|++|+|++|+ ++.......+..+++|++|++++|.
T Consensus 462 ~~~L~~L~L~~n-~l~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYV-GESDEGLME--FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSC-CSSHHHHHH--HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCC-CCCHHHHHH--HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 677888888777 344311111 12346778888888876 5544334455677788888888776
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.9e-21 Score=206.66 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=105.4
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
+++++++++|.+..+|.. .++|++|++++|. ...+|. .+.+|++|++++|.++.+|.. .++|++|++
T Consensus 72 ~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~----l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL--PPHLESLVASCNS----LTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCCSCCCSC--CTTCSEEECCSSC----CSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred CCCEEEecCCccccCCCC--cCCCCEEEccCCc----CCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence 356677777766666553 3567777777666 223443 235677777777766665532 156777777
Q ss_pred cCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccc
Q 005634 206 DGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKV 285 (686)
Q Consensus 206 ~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 285 (686)
++|.++..+.++++++|++|++++|.++.+|..+ .+|++|++++|. ++.+|. ++++++|++|++++|.+.
T Consensus 139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~---- 208 (454)
T 1jl5_A 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLK---- 208 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCS----
T ss_pred cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCC----
Confidence 7777666225677777777777777666666433 367777777765 566663 667777777777766654
Q ss_pred cCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEe
Q 005634 286 KGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICI 331 (686)
Q Consensus 286 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 331 (686)
..+.. .++|+.|++++|.+..+|....+++|+.|++..
T Consensus 209 --~l~~~------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 209 --KLPDL------PLSLESIVAGNNILEELPELQNLPFLTTIYADN 246 (454)
T ss_dssp --SCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred --cCCCC------cCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence 11111 136667777766666666433555666665543
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=4.9e-24 Score=236.82 Aligned_cols=434 Identities=16% Similarity=0.085 Sum_probs=269.2
Q ss_pred CCCCcceEEcccCCCccccccc-----------chhHhcCCCCccEEEecCccCCC-Cchhhhc-CC-CCcEEEccCCC-
Q 005634 145 QCPHLQLFLLITKGIAPVSMQI-----------SDLFFEGTEELKVLSLNRIHFSS-LPSSLGR-LI-NLQTLCLDGCG- 209 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~-----------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~-l~-~Lr~L~L~~~~- 209 (686)
.+++|++|++.++........+ ...+...+++|++|++++|.++. .+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 6888999999886521111112 12333478999999999997763 3444555 34 49999999987
Q ss_pred CCC--c-ccccCCCCCCEEEccCCCCCC-----cchhhcCCCCCCEEeCcCCcCcc-----ccChhhhcCCCCCcEEEec
Q 005634 210 LKD--I-AIVGQLKKLEILSLRDSKIKQ-----LPLEIGQLTRLQLLDLSDCRSLV-----VIAPNVISKFSRLKELYMG 276 (686)
Q Consensus 210 l~~--~-~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lp~~~l~~l~~L~~L~l~ 276 (686)
+.. . ..+.++++|++|++++|.++. ++....++++|++|+++++. ++ .++.- +.++++|++|+++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~-~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETI-ARNCRSLVSVKVG 228 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHH-HHHCTTCCEEECS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHH-HhhCCCCcEEecc
Confidence 433 2 344578999999999997652 44556778899999998887 44 33332 5688999999999
Q ss_pred CCccccccccCCCccchhhhCCCCCccEEEEeecCCCcC-CCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccC
Q 005634 277 DSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQIL-PQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLAN 355 (686)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~ 355 (686)
+|.+. ..+..++.+++|+.|+++......- +... .......+++.+.+.+..
T Consensus 229 ~~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~l~~~~~L~~L~l~~~~- 281 (592)
T 3ogk_B 229 DFEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMPEKY-----------------MNLVFPRKLCRLGLSYMG- 281 (592)
T ss_dssp SCBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCTTSS-----------------SCCCCCTTCCEEEETTCC-
T ss_pred CccHH---------HHHHHHhhhhHHHhhcccccccccchHHHH-----------------HHhhccccccccCccccc-
Confidence 88654 2446677888999999875332110 0000 001223355555555331
Q ss_pred ccchhhhhhHhhhhccccEEEEccccCcccc-cccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeecc
Q 005634 356 VSSLLENYGMKMLLKKTEDINLDELKGVQNV-VHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLI 434 (686)
Q Consensus 356 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 434 (686)
..........+++|++|++.++. +... ...+ +..+++|++|++.++-. +.........+++|++|++.
T Consensus 282 ---~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~--~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 282 ---PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL--IQKCPNLEVLETRNVIG-----DRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp ---TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH--HTTCTTCCEEEEEGGGH-----HHHHHHHHHHCTTCCEEEEE
T ss_pred ---hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH--HHhCcCCCEEeccCccC-----HHHHHHHHHhCCCCCEEEee
Confidence 11123344467899999999887 3222 1111 46789999999984421 11111123467899999999
Q ss_pred c----------cccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEee---cccceeeecccc
Q 005634 435 Y----------LNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVAS---CYKLEMIFGKNK 501 (686)
Q Consensus 435 ~----------~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~---c~~l~~~~~~~~ 501 (686)
+ |..++......+ ...+++|++|.+ .|.+++..........+++|++|++.+ |..++..+...
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~- 426 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN- 426 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-
T ss_pred cCccccccccccCccCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-
Confidence 5 766664322111 235899999999 567777653333344589999999985 55666532100
Q ss_pred ccccccccccCCcceeecccccc-cccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeeccCcc
Q 005634 502 NVRFSLQVSLPSLEELNLRELRN-IKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYCSSME 580 (686)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 580 (686)
.+......+++|+.|++++|.+ ++....... ...+++|+.|++++|. +++......+..+++|++|+|++|+ ++
T Consensus 427 -~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 427 -GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp -HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH--HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CB
T ss_pred -HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH--HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-Cc
Confidence 0111245689999999987754 332111111 2347899999999884 6654344566788999999999998 43
Q ss_pred eEecCCCCccCCCCcccccccccccccccccccccccccccCCcccccccccCCCcceeeecCC
Q 005634 581 GIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRKLTSFANTGHIHSDLVVEFPSLLNLNIDGC 644 (686)
Q Consensus 581 ~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~~~~l~sL~~L~i~~C 644 (686)
....+. ....+++|+.|.+.+|. ++.-.... +...+|.|+...|...
T Consensus 502 ~~~~~~-----------~~~~l~~L~~L~ls~n~-it~~~~~~-----l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 502 ERAIAA-----------AVTKLPSLRYLWVQGYR-ASMTGQDL-----MQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHH-----------HHHHCSSCCEEEEESCB-CCTTCTTG-----GGGCCTTEEEEEECCC
T ss_pred HHHHHH-----------HHHhcCccCeeECcCCc-CCHHHHHH-----HHHhCCCcEEEEecCc
Confidence 211000 01227899999999887 55322111 1246677776666553
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.9e-22 Score=202.24 Aligned_cols=130 Identities=24% Similarity=0.368 Sum_probs=99.9
Q ss_pred CCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCc
Q 005634 173 GTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLS 251 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 251 (686)
...+++.|++++|.++.+|..++++++|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578899999999998999888889999999999998888 788899999999999999888999999999999999999
Q ss_pred CCcCccccChhhhcC---------CCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 252 DCRSLVVIAPNVISK---------FSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 252 ~~~~l~~lp~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
+|...+.+|.. ++. +++|++|++++|.+. ..+..++++++|+.|++++|.+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCC
Confidence 88778888875 443 666666666655443 1233455555555555555443
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=4.4e-23 Score=229.30 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=107.9
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCc-cCCC--CchhhhcCCCCcEEEccCCCCCC--cccc---
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRI-HFSS--LPSSLGRLINLQTLCLDGCGLKD--IAIV--- 216 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~l~~l~~Lr~L~L~~~~l~~--~~~i--- 216 (686)
.+++|++|++++|. .....+..+...+++|++|++++| .+.. ++..+.++++|++|++++|.+++ +..+
T Consensus 103 ~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 57899999999887 344444455446889999999988 4543 56556688999999999998655 3333
Q ss_pred -cCCCCCCEEEccCCC--CC--CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCcc
Q 005634 217 -GQLKKLEILSLRDSK--IK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNA 291 (686)
Q Consensus 217 -~~L~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 291 (686)
..+++|++|++++|. ++ .++.-+.++++|++|++++|..++.+|.. +.++++|++|++..+..... ......
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~ 256 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVR--PDVYSG 256 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCC--HHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccc--hhhHHH
Confidence 367799999999886 33 23333466789999999998667777765 78899999998776542100 001122
Q ss_pred chhhhCCCCCccEE
Q 005634 292 SLAELKGLSKLTTL 305 (686)
Q Consensus 292 ~~~~l~~l~~L~~L 305 (686)
.+..+.++++|+.|
T Consensus 257 l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 257 LSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHTCTTCCEE
T ss_pred HHHHHhcCCCcccc
Confidence 34466777888877
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.5e-21 Score=199.82 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=103.3
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEccCCCCCC--cccccCCCCCCE
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEI 224 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 224 (686)
++++++++++. ...+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.++. |..++++++|++
T Consensus 34 ~l~~l~~~~~~----l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLG----LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSC----CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCC----ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 56777777765 34556543 356777777777777653 467777777777777777766 466777777777
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
|++++|.++.+|..+. ++|++|++++|. ++.+|...++++++|++|++++|.+. .....+..++.+ +|+.
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLE------NSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCB------GGGSCTTSSCSC-CCSC
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccc------cCCCCcccccCC-ccCE
Confidence 7777777777776655 677777777776 66777665677777777777777653 111223344555 6777
Q ss_pred EEEeecCCCcCCCc
Q 005634 305 LEIQVRDAQILPQD 318 (686)
Q Consensus 305 L~l~~~~~~~~~~~ 318 (686)
|++++|.+..+|..
T Consensus 177 L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 177 LRISEAKLTGIPKD 190 (332)
T ss_dssp CBCCSSBCSSCCSS
T ss_pred EECcCCCCCccCcc
Confidence 77777766655543
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.9e-23 Score=232.17 Aligned_cols=407 Identities=15% Similarity=0.085 Sum_probs=233.5
Q ss_pred CCCCcceEEcccCCCccccccc-----------chhHhcCCCCccEEEecCccCCC-Cchhhh-cCCCCcEEEccCCC-C
Q 005634 145 QCPHLQLFLLITKGIAPVSMQI-----------SDLFFEGTEELKVLSLNRIHFSS-LPSSLG-RLINLQTLCLDGCG-L 210 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~-----------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~-~l~~Lr~L~L~~~~-l 210 (686)
++++|++|++.++......... ...+...+++|+.|++++|.++. .+..+. .+++|++|++++|. +
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 5677888888776511001101 12344678899999999998763 344554 68999999999995 6
Q ss_pred CC--c-ccccCCCCCCEEEccCCCCCC-----cchhhcCCCCCCEEeCcCCcCccccCh----hhhcCCCCCcEEEecCC
Q 005634 211 KD--I-AIVGQLKKLEILSLRDSKIKQ-----LPLEIGQLTRLQLLDLSDCRSLVVIAP----NVISKFSRLKELYMGDS 278 (686)
Q Consensus 211 ~~--~-~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~----~~l~~l~~L~~L~l~~~ 278 (686)
+. + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..++. ..+.++++|++|++++|
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55 3 444589999999999997653 33333467899999999885 22222 12356799999999988
Q ss_pred ccccccccCCCccchhhhCCCCCccEEEEeecCC-------CcCCCcc-cccCccEEEEEecCcCCccccCCCCccEEEE
Q 005634 279 FSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA-------QILPQDL-VFVELQRYRICIGEALGVQRVDSETSRLVEL 350 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l 350 (686)
... ......+..+++|+.|++..+.. ..++..+ .+++|+.+. .+
T Consensus 222 ~~~--------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--------------------~~ 273 (594)
T 2p1m_B 222 VPL--------EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--------------------GF 273 (594)
T ss_dssp SCH--------HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--------------------CC
T ss_pred CcH--------HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--------------------CC
Confidence 422 12455677888999998765432 1111111 334444431 11
Q ss_pred cCccCccchhhhhhHhhhhccccEEEEccccCcccc-cccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCccc
Q 005634 351 CGLANVSSLLENYGMKMLLKKTEDINLDELKGVQNV-VHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLE 429 (686)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 429 (686)
.+. .. .........+++|+.|++.++. +++. ...+ +..+++|++|++.+|- . +.........+++|+
T Consensus 274 ~~~---~~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~--~~~~~~L~~L~l~~~~--~---~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 274 WDA---VP-AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKL--LCQCPKLQRLWVLDYI--E---DAGLEVLASTCKDLR 341 (594)
T ss_dssp BTC---CG-GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHH--HTTCTTCCEEEEEGGG--H---HHHHHHHHHHCTTCC
T ss_pred ccc---ch-hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHH--HhcCCCcCEEeCcCcc--C---HHHHHHHHHhCCCCC
Confidence 111 10 1112222346777788777766 3321 1111 3467788888888762 1 100001123467788
Q ss_pred Eeeccc--------cccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhhcCCccEEEEe-----ecccceee
Q 005634 430 SLSLIY--------LNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVA-----SCYKLEMI 496 (686)
Q Consensus 430 ~L~l~~--------~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~-----~c~~l~~~ 496 (686)
+|++.+ +..++......+ ...+++|++|.+ +|.+++..........+++|++|++. +|..++..
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred EEEEecCcccccccCCCCCHHHHHHH--HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 887743 333332211111 123688888844 55666654333333467888888888 56676643
Q ss_pred eccccccccccccccCCcceeecccccccccccccCCCccccCCCCeEEEEecCCCcccccchhHHHhhccCcEEEEeec
Q 005634 497 FGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCCQNLTTVIVDGCDHMKYLFSYSMVNSLLQLQYLEISYC 576 (686)
Q Consensus 497 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 576 (686)
+... .+......+++|+.|++++ .+++...... ...+++|+.|++++|. +++......+..+++|++|++++|
T Consensus 419 ~~~~--~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l--~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 419 PLDI--GFGAIVEHCKDLRRLSLSG--LLTDKVFEYI--GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTHH--HHHHHHHHCTTCCEEECCS--SCCHHHHHHH--HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred chhh--HHHHHHhhCCCccEEeecC--cccHHHHHHH--HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence 3100 0011234677888888865 3433211111 1236788888888875 554433334466788888888888
Q ss_pred cCcceEecCCCCccCCCCccccccccccccccccccccc
Q 005634 577 SSMEGIVDTTGWSERDEGKFIELKVFPKLHSMRLQWLRK 615 (686)
Q Consensus 577 ~~l~~l~~~~~~~~~~~~~l~~~~~~p~L~~L~l~~c~~ 615 (686)
+. +.. +... -...+++|+.|.+.+|+.
T Consensus 492 ~~-~~~----~~~~-------~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 492 PF-GDK----ALLA-------NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SC-CHH----HHHH-------TGGGGGGSSEEEEESSCC
T ss_pred CC-cHH----HHHH-------HHHhCCCCCEEeeeCCCC
Confidence 73 211 0000 012267888888888865
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.6e-20 Score=192.01 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=155.2
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCE
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEI 224 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 224 (686)
++++++++++. ...+|..+ ...+++|++++|.++.++. .++++++|++|++++|.++. |..++++++|++
T Consensus 32 ~l~~l~~~~~~----l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLG----LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSC----CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCC----ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 45666666554 33444432 2456667777776666554 46667777777777776665 456677777777
Q ss_pred EEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 225 LSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 225 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
|++++|.++.+|..+. ++|++|++++|. ++.++...++++++|++|++++|.+. ........++.+++|+.
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLK------SSGIENGAFQGMKKLSY 175 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCC------GGGBCTTGGGGCTTCCE
T ss_pred EECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCC------ccCcChhhccCCCCcCE
Confidence 7777777776666554 567777777766 66666655667777777777766553 11123345666667777
Q ss_pred EEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccccCcc
Q 005634 305 LEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDELKGVQ 384 (686)
Q Consensus 305 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 384 (686)
|++++|.+..+|.... .+|+. +.+. ++. ++
T Consensus 176 L~l~~n~l~~l~~~~~-~~L~~---------------------L~l~---------------------------~n~-l~ 205 (330)
T 1xku_A 176 IRIADTNITTIPQGLP-PSLTE---------------------LHLD---------------------------GNK-IT 205 (330)
T ss_dssp EECCSSCCCSCCSSCC-TTCSE---------------------EECT---------------------------TSC-CC
T ss_pred EECCCCccccCCcccc-ccCCE---------------------EECC---------------------------CCc-CC
Confidence 7777666555544321 22222 2222 111 00
Q ss_pred cccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEEEecC
Q 005634 385 NVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNS 464 (686)
Q Consensus 385 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 464 (686)
.... ..+..+++|+.|+++++. ++.+.. .....+++|+.|+++++ .++.++.. ...+++|++|+++++
T Consensus 206 ~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~N-~l~~lp~~----l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 206 KVDA--ASLKGLNNLAKLGLSFNS-ISAVDN----GSLANTPHLRELHLNNN-KLVKVPGG----LADHKYIQVVYLHNN 273 (330)
T ss_dssp EECT--GGGTTCTTCCEEECCSSC-CCEECT----TTGGGSTTCCEEECCSS-CCSSCCTT----TTTCSSCCEEECCSS
T ss_pred ccCH--HHhcCCCCCCEEECCCCc-CceeCh----hhccCCCCCCEEECCCC-cCccCChh----hccCCCcCEEECCCC
Confidence 0000 003355666666666553 222211 02334566666666664 34444332 445677777777764
Q ss_pred CCCccccCchh-----hhhcCCccEEEEeeccccee-eeccccccccccccccCCcceeecccc
Q 005634 465 QKLKQLFSFSI-----AKNLLRLQKVEVASCYKLEM-IFGKNKNVRFSLQVSLPSLEELNLREL 522 (686)
Q Consensus 465 ~~l~~l~~~~~-----~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~ 522 (686)
.++.+++... ....++|+.|++.+.+.... ++ ......+++|+.++++++
T Consensus 274 -~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~-------~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 -NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ-------PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC-------GGGGTTCCCGGGEEC---
T ss_pred -cCCccChhhcCCcccccccccccceEeecCcccccccC-------ccccccccceeEEEeccc
Confidence 3555543211 11246677777776553211 11 123445667777777654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.5e-20 Score=192.31 Aligned_cols=125 Identities=23% Similarity=0.329 Sum_probs=105.9
Q ss_pred CCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCc
Q 005634 175 EELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLS 251 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 251 (686)
.++++++++++.++.+|..+. ++|++|++++|.++. +..++++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 468999999999999998764 689999999999888 46899999999999999999977 7789999999999999
Q ss_pred CCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 252 DCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 252 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
+|. ++.+|.. +. ++|++|++++|.+. ......++.+++|+.|++++|...
T Consensus 111 ~n~-l~~l~~~-~~--~~L~~L~l~~n~i~--------~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNH-LVEIPPN-LP--SSLVELRIHDNRIR--------KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSC-CCSCCSS-CC--TTCCEEECCSSCCC--------CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCc-CCccCcc-cc--ccCCEEECCCCccC--------ccCHhHhCCCccCCEEECCCCccc
Confidence 998 8899976 43 89999999999875 112234788889999999877654
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=4.9e-21 Score=193.70 Aligned_cols=174 Identities=14% Similarity=0.218 Sum_probs=127.4
Q ss_pred CCCEEEEccCCCCC---CCCCcC-CCCCcceEEccc-CCCcccccccchhHhcCCCCccEEEecCccCC-CCchhhhcCC
Q 005634 125 KDPIAISLPRRDIQ---ELPKRL-QCPHLQLFLLIT-KGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-SLPSSLGRLI 198 (686)
Q Consensus 125 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~ 198 (686)
.++++|+++++.+. .+|..+ ++++|++|++++ |. ..+.+|..+ .++++|++|++++|.+. .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~---l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---LVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT---EESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc---ccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 56888888888875 466655 788888888884 65 445566654 77888888888888876 6777788888
Q ss_pred CCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCC-CcchhhcCCC-CCCEEeCcCCcCccccChhhhcCCCCCcEEE
Q 005634 199 NLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLT-RLQLLDLSDCRSLVVIAPNVISKFSRLKELY 274 (686)
Q Consensus 199 ~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~ 274 (686)
+|++|++++|.++. |..++++++|++|++++|.++ .+|..++++. +|++|++++|...+.+|.. ++.++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEE
Confidence 88888888888763 677888888888888888877 7788888887 7888888887733355655 67776 88888
Q ss_pred ecCCccccccccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 275 MGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
+++|.+. ...+..++.+++|+.|++++|.+
T Consensus 204 Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 204 LSRNMLE--------GDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSEEE--------ECCGGGCCTTSCCSEEECCSSEE
T ss_pred CcCCccc--------CcCCHHHhcCCCCCEEECCCCce
Confidence 8887654 12345566777777777776543
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.7e-21 Score=194.40 Aligned_cols=193 Identities=24% Similarity=0.384 Sum_probs=163.8
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
..+++.|+++++.+..+|..+ ++++|++|++++|. ...+|..+ +++++|++|++++|.++.+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~----l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG----LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC----CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC----ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 567999999999999998876 79999999999998 33778765 8999999999999999999999999999999
Q ss_pred EEccCCC-CCC-cccccC---------CCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCc
Q 005634 203 LCLDGCG-LKD-IAIVGQ---------LKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLK 271 (686)
Q Consensus 203 L~L~~~~-l~~-~~~i~~---------L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 271 (686)
|++++|. +.. |..++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCC
Confidence 9999987 444 666554 999999999999999999999999999999999998 8889887 89999999
Q ss_pred EEEecCCccccccccCCCccchhhhCCCCCccEEEEeecC-CCcCCCcc-cccCccEEEEEe
Q 005634 272 ELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRD-AQILPQDL-VFVELQRYRICI 331 (686)
Q Consensus 272 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~-~l~~L~~L~l~~ 331 (686)
+|++++|.+. ...+..++.+++|+.|++++|. .+.+|..+ .+++|+.|++..
T Consensus 233 ~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 233 ELDLRGCTAL--------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp EEECTTCTTC--------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred EEECcCCcch--------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 9999998765 2345568889999999999876 55666655 666666665543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=192.66 Aligned_cols=171 Identities=20% Similarity=0.217 Sum_probs=103.3
Q ss_pred EEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCC
Q 005634 130 ISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGC 208 (686)
Q Consensus 130 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~ 208 (686)
.+.+++.+..+|..+ .++|++|++++|. ...++...+.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 556666666666543 2466777777665 3345554456666777777776666654 344666666777777666
Q ss_pred CCCC-cc-cccCCCCCCEEEccCCCCCCcch--hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 209 GLKD-IA-IVGQLKKLEILSLRDSKIKQLPL--EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 209 ~l~~-~~-~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
.++. +. .++++++|++|++++|.++.+|. .++++++|++|++++|..++.++...++++++|++|++++|.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--- 187 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--- 187 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---
Confidence 6666 33 36666667777776666666665 46666666666666664455555444666666666666666543
Q ss_pred ccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 285 VKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
...+..++.+++|++|++++|...
T Consensus 188 -----~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 188 -----SYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSCST
T ss_pred -----ccCHHHHhccccCCeecCCCCccc
Confidence 112344555666666666655443
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.1e-19 Score=185.79 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=139.6
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~ 204 (686)
+++.++++++.+..+|..+ .+++++|++++|. ...++...|+++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 5778888888888887654 4789999999987 4456665568999999999999998876 77889999999999
Q ss_pred ccCCCCCC-cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccc--cChhhhcCCCCCcEEEecCCcc
Q 005634 205 LDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVV--IAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 205 L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
+++|.++. |..+. ++|++|++++|.++.++. .++++++|++|++++|. ++. +....++++++|++|++++|.+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcc
Confidence 99999887 65554 789999999999987765 47889999999999887 542 3333488899999999998876
Q ss_pred ccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCc-c-cccCccEEEE
Q 005634 281 QWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQD-L-VFVELQRYRI 329 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l 329 (686)
. .. +..+ .++|+.|++++|.+..++.. + .+.+|+.|++
T Consensus 184 ~------~l---~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 184 T------TI---PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp C------SC---CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred c------cC---Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 5 11 1112 26889999998876655322 2 4444444443
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.6e-20 Score=189.86 Aligned_cols=248 Identities=14% Similarity=0.100 Sum_probs=166.1
Q ss_pred CCcceEEcccCCCccccc--ccchhHhcCCCCccEEEecC-ccCC-CCchhhhcCCCCcEEEccCCCCCC--cccccCCC
Q 005634 147 PHLQLFLLITKGIAPVSM--QISDLFFEGTEELKVLSLNR-IHFS-SLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLK 220 (686)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~ 220 (686)
.+++.|+++++. ..+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.++. |..+++++
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCC---ccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 578888888887 334 566654 7888888888884 6665 678888888888888888888764 67788888
Q ss_pred CCCEEEccCCCCC-CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCC-CCcEEEecCCccccccccCCCccchhhhCC
Q 005634 221 KLEILSLRDSKIK-QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFS-RLKELYMGDSFSQWDKVKGGRNASLAELKG 298 (686)
Q Consensus 221 ~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 298 (686)
+|++|++++|.++ .+|..++++++|++|++++|...+.+|.. +++++ +|++|++++|.+. ...+..++.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~--------~~~~~~~~~ 196 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT--------GKIPPTFAN 196 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE--------EECCGGGGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee--------ccCChHHhC
Confidence 8888888888877 67888888888888888888733367776 77777 8888888887654 122334444
Q ss_pred CCCccEEEEeecCCCcCCCcccccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEc
Q 005634 299 LSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLD 378 (686)
Q Consensus 299 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 378 (686)
++ |+.|++++|.+...+
T Consensus 197 l~-L~~L~Ls~N~l~~~~-------------------------------------------------------------- 213 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDA-------------------------------------------------------------- 213 (313)
T ss_dssp CC-CSEEECCSSEEEECC--------------------------------------------------------------
T ss_pred Cc-ccEEECcCCcccCcC--------------------------------------------------------------
Confidence 44 666666644221100
Q ss_pred cccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCE
Q 005634 379 ELKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRI 458 (686)
Q Consensus 379 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 458 (686)
... +..+++|+.|+++++.- .. .++. ...+++|++
T Consensus 214 --------~~~---~~~l~~L~~L~L~~N~l-~~----------------------------~~~~-----~~~l~~L~~ 248 (313)
T 1ogq_A 214 --------SVL---FGSDKNTQKIHLAKNSL-AF----------------------------DLGK-----VGLSKNLNG 248 (313)
T ss_dssp --------GGG---CCTTSCCSEEECCSSEE-CC----------------------------BGGG-----CCCCTTCCE
T ss_pred --------CHH---HhcCCCCCEEECCCCce-ee----------------------------ecCc-----ccccCCCCE
Confidence 001 34566777777766531 00 0000 234577777
Q ss_pred EEEecCCCCc-cccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeeccccccccc
Q 005634 459 IKVRNSQKLK-QLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKK 527 (686)
Q Consensus 459 L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 527 (686)
|+++++. ++ .+|. .+..+++|++|+++++.--..++ ....+++|+.|++.+++.+..
T Consensus 249 L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 249 LDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEEES
T ss_pred EECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCccC
Confidence 7777754 44 3333 46778888888888876544555 336788888888888865543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=189.72 Aligned_cols=155 Identities=24% Similarity=0.310 Sum_probs=123.4
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
.|+...+.+++++. ...+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++
T Consensus 29 ~C~~~~~c~~~~~~----l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 29 SCDRNGICKGSSGS----LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECTTSEEECCSTT----CSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCeEeeCCCCC----cccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 56666677787776 55777755 3589999999999988776 68899999999999999887 467899999
Q ss_pred CCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccCh-hhhcCCCCCcEEEecCCc-cccccccCCCccchhhhCC
Q 005634 222 LEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAP-NVISKFSRLKELYMGDSF-SQWDKVKGGRNASLAELKG 298 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~ 298 (686)
|++|++++|.++.+|.. ++++++|++|++++|. ++.+|. ..++++++|++|++++|. +. ......+++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~ 172 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT--------KIQRKDFAG 172 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC--------EECTTTTTT
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc--------ccCHHHccC
Confidence 99999999999988877 8899999999999987 788887 447889999999998884 32 112345777
Q ss_pred CCCccEEEEeecCCCcC
Q 005634 299 LSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 299 l~~L~~L~l~~~~~~~~ 315 (686)
+++|+.|++++|.+..+
T Consensus 173 l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 173 LTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCEEEEEEEEETTCCEE
T ss_pred CCCCCEEECCCCCcCcc
Confidence 88888888888765443
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.3e-21 Score=210.27 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=104.7
Q ss_pred CCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC-----CCchhhhcCCCCcEEEccCCCCCC--cccc-cC
Q 005634 147 PHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS-----SLPSSLGRLINLQTLCLDGCGLKD--IAIV-GQ 218 (686)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i-~~ 218 (686)
++|++|+++++.+ .......++..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+ ..
T Consensus 3 ~~l~~L~Ls~~~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCC---CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhccc---CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 4567777777762 22223444577888888888888876 456777788888888888888765 3333 33
Q ss_pred CC----CCCEEEccCCCCC-----CcchhhcCCCCCCEEeCcCCcCccccChhhh-----cCCCCCcEEEecCCcccccc
Q 005634 219 LK----KLEILSLRDSKIK-----QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVI-----SKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 219 L~----~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l-----~~l~~L~~L~l~~~~~~~~~ 284 (686)
+. +|++|++++|.++ .+|..+.++++|++|++++|. ++......+ ...++|++|++++|.+....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 44 6888888888877 457778888888888888887 543221112 23567888888888765110
Q ss_pred ccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 285 VKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
.......++.+++|++|++++|.+
T Consensus 159 ----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 ----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 012244566677888888877654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=4e-19 Score=189.11 Aligned_cols=174 Identities=24% Similarity=0.318 Sum_probs=136.3
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L 205 (686)
.+.++..+..+..+|..+ .++++.|++++|. ...++...|.++++|++|++++|.+..++ ..+.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 456777777788888655 3788889998887 44555555688899999999999888755 56888899999999
Q ss_pred cCCCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 206 DGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 206 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
++|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9988887 4 568888999999999998887765 57888899999998877788888776888889999998888765
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCcC
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 315 (686)
.+..+..+++|+.|++++|.+..+
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred ---------cccccCCCcccCEEECCCCccCcc
Confidence 233467777888888877755433
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.6e-19 Score=190.10 Aligned_cols=173 Identities=24% Similarity=0.278 Sum_probs=134.4
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L 205 (686)
.+.++..+..+..+|..+ .+++++|++++|. ...++...|.++++|++|++++|.++.++ ..+.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456777777777777654 3688889998887 34455555688899999999998888654 56888889999999
Q ss_pred cCCCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 206 DGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 206 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
++|.++. + ..++.+++|++|++++|.++.+|. .+.++++|++|++++|..++.++.+.+.++++|++|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 9988877 4 568888999999999988887766 57888899999998877788888776888888999988888765
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCc
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 314 (686)
.+..+..+++|+.|++++|.+..
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSE
T ss_pred ---------ccccccccccccEEECcCCcCcc
Confidence 22356777788888887765443
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=2.3e-21 Score=208.22 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=123.2
Q ss_pred CCCEEEEccCCCCCCCCCc--C-CCCCcceEEcccCCCcccc-cccchhHhcCCCCccEEEecCccCCC-Cchhh-hcCC
Q 005634 125 KDPIAISLPRRDIQELPKR--L-QCPHLQLFLLITKGIAPVS-MQISDLFFEGTEELKVLSLNRIHFSS-LPSSL-GRLI 198 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l-~~l~ 198 (686)
.++++|+++++.+...+.. + .+++|++|++++|.+.... ..++. .+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4578899998887544321 2 6889999999999843111 12333 35788999999999998864 22233 3455
Q ss_pred ----CCcEEEccCCCCCC------cccccCCCCCCEEEccCCCCCCc-chhh-----cCCCCCCEEeCcCCcCccc----
Q 005634 199 ----NLQTLCLDGCGLKD------IAIVGQLKKLEILSLRDSKIKQL-PLEI-----GQLTRLQLLDLSDCRSLVV---- 258 (686)
Q Consensus 199 ----~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~l~~~~i~~l-p~~i-----~~L~~L~~L~l~~~~~l~~---- 258 (686)
+|++|++++|.+++ +..+.++++|++|++++|.++.. +..+ ...++|++|++++|. ++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 69999999999873 57788999999999999988632 2222 235689999999987 554
Q ss_pred -cChhhhcCCCCCcEEEecCCccccccccCCCccchhhhC-CCCCccEEEEeecCCC
Q 005634 259 -IAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELK-GLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 259 -lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 313 (686)
++.. +.++++|++|++++|.+..... ......+. ..++|++|++++|.+.
T Consensus 161 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 161 PLASV-LRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHH-HhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCc
Confidence 3333 6778999999999987641100 00111121 3557888888877544
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.4e-19 Score=180.84 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=151.1
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCcc-CCCC-
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIH-FSSL- 190 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l- 190 (686)
...+|. ....++++|++++|.+..++.. + .+++|++|++++|. ...++...+.++++|++|++++|. +..+
T Consensus 23 l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 23 LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred cccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 333443 3466788888888888777643 2 78888888888887 334544445788888888888886 7766
Q ss_pred chhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCC
Q 005634 191 PSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKF 267 (686)
Q Consensus 191 p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 267 (686)
|..+..+++|++|++++|.++. +..++++++|++|++++|.++.+|.. ++++++|++|++++|. ++.+|...+.++
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCc
Confidence 6678888888888888888777 46788888888888888888877654 7888888888888887 778877667888
Q ss_pred CCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEE
Q 005634 268 SRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRIC 330 (686)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~ 330 (686)
++|++|++++|.+. ...+..++.+++|+.|++++|.+..++... .+.+|+.+++.
T Consensus 177 ~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 177 HSLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cccCEEECCCCccc--------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 88888888888765 222456777888888888888877666542 55666666554
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.5e-18 Score=188.28 Aligned_cols=157 Identities=21% Similarity=0.225 Sum_probs=126.2
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
+++.++++++.+..+|..+. ++|++|++++|. ...+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~----l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN----LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC----CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCC----CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 47899999999998887664 899999999997 345665 57889999999999998886 7789999999
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
++|.++. |. .+.+|++|++++|.++.+|.. +++|++|++++|. ++.+|. .+.+|+.|++++|.+.
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT--- 174 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS---
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC---
Confidence 9999888 44 678899999999999988864 4889999999987 777775 3578899999988765
Q ss_pred ccCCCccchhhhCCCCCccEEEEeecCCCcCCC
Q 005634 285 VKGGRNASLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
. +. ..+++|+.|++++|.+..+|.
T Consensus 175 ---~----l~--~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 175 ---S----LP--MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp ---C----CC--CCCTTCCEEECCSSCCSCCCC
T ss_pred ---C----Cc--ccCCCCcEEECCCCCCCCCCC
Confidence 1 11 456788888888887765554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.3e-19 Score=180.13 Aligned_cols=173 Identities=21% Similarity=0.164 Sum_probs=91.2
Q ss_pred EEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC---chhhhcCCCCcEEEc
Q 005634 129 AISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL---PSSLGRLINLQTLCL 205 (686)
Q Consensus 129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~l~~l~~Lr~L~L 205 (686)
.++.+++.+..+|..+ .+++++|++++|. ...+|..+|+++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCc----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3445555555555432 2455666666555 2345555455566666666666655433 444555566666666
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcch--hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPL--EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
++|.+.. +..+..+++|++|++++|.++.++. .+.++++|++|++++|. +...+...++++++|++|++++|.+..
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc
Confidence 6665555 4455556666666666665555443 45555666666666555 443333335555666666665554430
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCc
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 314 (686)
...+..++.+++|+.|++++|.+..
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCE
T ss_pred -------ccchhHHhhCcCCCEEECCCCCcCC
Confidence 0122334555556666665555443
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=3.7e-18 Score=170.17 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=164.2
Q ss_pred CCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 123 IQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
...+++.++++++.+..+|..+ .+++++|++++|. ...++...|.++++|++|++++|.++.++.. +.+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 3567899999999999998765 3799999999998 4456555678999999999999999988765 78999999
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcc-hhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcc
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLP-LEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
|++++|.++. |..+..+++|++|++++|.++.+| ..+..+++|++|++++|. ++.+|.+.+.++++|++|++++|.+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC
Confidence 9999999988 788999999999999999999887 458999999999999998 8899988778999999999999987
Q ss_pred ccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc-cccCccEEEEE
Q 005634 281 QWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL-VFVELQRYRIC 330 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~ 330 (686)
. . .....+..+++|+.|++++|.+..+|..+ ...+|+.+.+.
T Consensus 161 ~------~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 161 T------E--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp S------C--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred C------c--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 6 1 11234678899999999999999888876 66677777654
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=7.3e-18 Score=184.57 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=103.4
Q ss_pred CCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEE
Q 005634 147 PHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEIL 225 (686)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L 225 (686)
.++++|+++++. ...+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++. |. .+++|++|
T Consensus 40 ~~l~~L~ls~n~----L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESG----LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSC----CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCC----cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 457888888887 446776552 688899999888888886 57888899998888887 44 67888889
Q ss_pred EccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEE
Q 005634 226 SLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTL 305 (686)
Q Consensus 226 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 305 (686)
++++|.++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.+. ..+ ....+|+.|
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~------~l~------~~~~~L~~L 166 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA------SLP------ALPSELCKL 166 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS------CCC------CCCTTCCEE
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC------CcC------CccCCCCEE
Confidence 998888888876 66788888888887 7788763 478888888888765 111 123567777
Q ss_pred EEeecCCCcCC
Q 005634 306 EIQVRDAQILP 316 (686)
Q Consensus 306 ~l~~~~~~~~~ 316 (686)
++++|.+..+|
T Consensus 167 ~L~~N~l~~l~ 177 (622)
T 3g06_A 167 WAYNNQLTSLP 177 (622)
T ss_dssp ECCSSCCSCCC
T ss_pred ECCCCCCCCCc
Confidence 77777666554
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=6.6e-18 Score=170.16 Aligned_cols=189 Identities=15% Similarity=0.209 Sum_probs=157.4
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
..++++|+++++.+..++....+++|++|++++|. ...++. +..+++|++|++++|.++.++ .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~----i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ----ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc----CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 55789999999999888765589999999999997 345555 589999999999999998876 58899999999
Q ss_pred EccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 204 CLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 204 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
++++|.++....++.+++|++|++++|.++.++. ++.+++|++|++++|. ++.++. ++++++|++|++++|.+.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~-- 186 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS-- 186 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC--
Confidence 9999998885558999999999999999998876 8899999999999987 888876 789999999999998875
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecC
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGE 333 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.+..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 187 --------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 --------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp --------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred --------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 223378888999999999988877754477778887776554
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.6e-18 Score=166.97 Aligned_cols=191 Identities=21% Similarity=0.336 Sum_probs=144.0
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~ 204 (686)
..+.++++++.+..+|..+ .+++++|++++|. ...++...|.++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNK----LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSC----CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCC----CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4567888888887777654 3678888888887 4456665568888888888888888877765 47788888888
Q ss_pred ccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 205 LDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 205 L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+++|.++. + ..+..+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|...++++++|++|++++|.+.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc
Confidence 88888777 4 5678888888888888888877654 6788888888888887 77887766788888888888888765
Q ss_pred cccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEE
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRIC 330 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~ 330 (686)
......+..+++|+.|++++|.+..++... .+.+|+.+.+.
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 112234677788888888888877776653 56666666654
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.7e-18 Score=168.54 Aligned_cols=190 Identities=19% Similarity=0.273 Sum_probs=157.3
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L 205 (686)
.+.++..++.+..+|... .++|++|++++|. ...++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 367888888888888654 5799999999998 4567766679999999999999999876 778999999999999
Q ss_pred cCCC-CCC--cccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 206 DGCG-LKD--IAIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 206 ~~~~-l~~--~~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
++|. ++. +..+..+++|++|++++|.++.+ |..+.++++|++|++++|. ++.++...++++++|++|++++|.+.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc
Confidence 9997 777 57899999999999999999977 5668999999999999998 88888776899999999999999775
Q ss_pred cccccCCCccchhhhCCCCCccEEEEeecCCCcC-CCcc-cccCccEEEEE
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTLEIQVRDAQIL-PQDL-VFVELQRYRIC 330 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~l~~L~~L~l~ 330 (686)
. .....+..+++|+.|++++|.+..+ +..+ .+++|+.|++.
T Consensus 167 ~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 167 S--------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp E--------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred c--------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 1 1223477889999999999987665 3333 55666666544
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.9e-18 Score=172.17 Aligned_cols=207 Identities=18% Similarity=0.204 Sum_probs=169.1
Q ss_pred chhhhhcccCCCCCEEEEccCCCCCCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc
Q 005634 114 DVKKKMEETIQKDPIAISLPRRDIQELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP 191 (686)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 191 (686)
....+|. ....++++|++++|.+..++... ++++|++|++++|.+. .....+..+ ..+++|++|++++|.+..+|
T Consensus 18 ~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 18 GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSD-FGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHH-HSCSCCCEEECCSCSEEEEE
T ss_pred CcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCccccc-ccccccCEEECCCCccccCh
Confidence 3444454 34578999999999999888753 8999999999999843 112234554 57999999999999999999
Q ss_pred hhhhcCCCCcEEEccCCCCCC-c--ccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeCcCCcCccc--cChhhhc
Q 005634 192 SSLGRLINLQTLCLDGCGLKD-I--AIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDLSDCRSLVV--IAPNVIS 265 (686)
Q Consensus 192 ~~l~~l~~Lr~L~L~~~~l~~-~--~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~ 265 (686)
..+..+++|++|++++|.++. + ..+..+++|++|++++|.++ ..|..++.+++|++|++++|. +.. +|.. ++
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~ 172 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FT 172 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CT
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-Hh
Confidence 999999999999999999877 4 57999999999999999988 455668999999999999998 554 5665 89
Q ss_pred CCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEecC
Q 005634 266 KFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICIGE 333 (686)
Q Consensus 266 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~ 333 (686)
.+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++... .+.+|+.|++..+.
T Consensus 173 ~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred hCcCCCEEECCCCCcC--------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 9999999999999875 222456788999999999999988776643 67888888876554
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.4e-18 Score=179.76 Aligned_cols=205 Identities=18% Similarity=0.283 Sum_probs=169.9
Q ss_pred CchhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 113 ADVKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 113 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
..+..+|. ....+++.|++++|.+..++.. + ++++|++|++++|. ...++...|.++++|++|++++|.++.+
T Consensus 53 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 53 KNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC----CCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc----CCccChhhccCCccCCEEECCCCcCCee
Confidence 34445554 4567899999999999877643 3 89999999999998 4566766779999999999999999988
Q ss_pred ch-hhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCC-CCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhc
Q 005634 191 PS-SLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDS-KIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVIS 265 (686)
Q Consensus 191 p~-~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 265 (686)
|. .+..+++|++|++++|.++. + ..+.++++|++|++++| .+..++. .+.++++|++|++++|. ++.+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 76 58899999999999999888 4 68999999999999996 6777766 58899999999999997 889986 89
Q ss_pred CCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEecC
Q 005634 266 KFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICIGE 333 (686)
Q Consensus 266 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~ 333 (686)
.+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++... .+.+|+.|++..+.
T Consensus 205 ~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLS--------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp TCSSCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred CCcccCEEECCCCccC--------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 9999999999999875 223456888999999999999887776543 67778887775543
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=8.3e-18 Score=179.58 Aligned_cols=224 Identities=18% Similarity=0.222 Sum_probs=176.3
Q ss_pred CchhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 113 ADVKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 113 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
..+..+|. ....+++.|++++|.+..++.. + ++++|++|++++|. ...++...|.++++|++|++++|.++.+
T Consensus 64 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 64 RGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc----cCCcChhhccCcccCCEEECCCCcCCcc
Confidence 33444553 3467899999999999777543 3 89999999999998 4456666678999999999999999988
Q ss_pred chh-hhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCC-CCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhc
Q 005634 191 PSS-LGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDS-KIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVIS 265 (686)
Q Consensus 191 p~~-l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 265 (686)
|.. ++++++|++|++++|.++. + ..+.++++|++|++++| .+..+|. .+..+++|++|++++|. ++.+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cc
Confidence 765 8889999999999999888 4 67899999999999995 7777776 48899999999999998 888886 89
Q ss_pred CCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEecCcCCcc---cc
Q 005634 266 KFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICIGEALGVQ---RV 340 (686)
Q Consensus 266 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~---~~ 340 (686)
.+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++... .+.+|+.|++..+...... ..
T Consensus 216 ~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFP--------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp TCTTCCEEECTTSCCS--------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred ccccccEEECcCCcCc--------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 9999999999999876 223567888999999999999887765443 6788888887655432221 12
Q ss_pred CCCCccEEEEcC
Q 005634 341 DSETSRLVELCG 352 (686)
Q Consensus 341 ~~~~l~~l~l~~ 352 (686)
..++++.+.+.+
T Consensus 288 ~l~~L~~L~L~~ 299 (452)
T 3zyi_A 288 PLRYLVELHLHH 299 (452)
T ss_dssp TCTTCCEEECCS
T ss_pred cccCCCEEEccC
Confidence 234455555553
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.7e-17 Score=163.97 Aligned_cols=185 Identities=24% Similarity=0.349 Sum_probs=157.4
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS 192 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 192 (686)
+..+|. ....++++|++++|.+..++.. + .+++|++|++++|. ...++..+|.++++|++|++++|.+..+|.
T Consensus 28 l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 28 LTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK----LQTLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC----CSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred CCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc----cCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 334443 3457899999999999888763 3 89999999999998 457888888999999999999999998875
Q ss_pred -hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCC
Q 005634 193 -SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFS 268 (686)
Q Consensus 193 -~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 268 (686)
.+.++++|++|++++|.++. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.++...+.+++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLT 181 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCC
Confidence 46899999999999999888 46789999999999999999988876 7899999999999998 8888887688999
Q ss_pred CCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 269 RLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
+|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 182 ~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 182 ELKTLKLDNNQLK--------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCEEECCCCcCC--------cCCHHHhccccCCCEEEecCCCee
Confidence 9999999999875 112234778899999999988753
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=8.6e-18 Score=166.90 Aligned_cols=195 Identities=21% Similarity=0.245 Sum_probs=156.1
Q ss_pred CCCCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCC
Q 005634 123 IQKDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLIN 199 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~ 199 (686)
...++++|++++|.+..++. .+ ++++|++|++++|. ...++...|.++++|++|++++|.++.++ ..+.++++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 45679999999999987775 33 78999999999997 44566666789999999999999998765 56889999
Q ss_pred CcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCC--cchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCc----
Q 005634 200 LQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQ--LPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLK---- 271 (686)
Q Consensus 200 Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~---- 271 (686)
|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++|. ++.++...+..+++|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccce
Confidence 9999999999887 3 478999999999999999886 78899999999999999988 7777765567666666
Q ss_pred EEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEe
Q 005634 272 ELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICI 331 (686)
Q Consensus 272 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~ 331 (686)
+|++++|.+.. .........+|+.|++++|.+..++... .+.+|+.+++..
T Consensus 181 ~L~ls~n~l~~---------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 181 SLDLSLNPMNF---------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEECCSSCCCE---------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred eeecCCCcccc---------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 89999887651 2222333447999999999988887664 577777777643
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.2e-19 Score=179.33 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=92.0
Q ss_pred cccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCC
Q 005634 164 MQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQL 242 (686)
Q Consensus 164 ~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L 242 (686)
...+..++..+++|++|++++|.++.++ ..++++++|++|++++|.++....++.+++|++|++++|.++.+| ..
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----EC
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CC
Confidence 3445556667778888888888887654 567788888888888888776323778888888888888777665 33
Q ss_pred CCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 243 TRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 243 ~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
++|++|++++|. +..++. ..+++|++|++++|.+.. .....++.+++|+.|++++|.+.
T Consensus 99 ~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp TTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCC
T ss_pred CCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCC
Confidence 778888888876 666664 346778888887776651 11223455667777777765443
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.1e-19 Score=180.97 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 125 KDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
.++++|++++|.+..++. .+ .+++|++|++++|.+ ..+++ +..+++|++|++++|.++.+| ..++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL----YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC----EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC----Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 345555555555544432 11 455555555555541 11222 345555555555555554443 2245555
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhh-cCCCCCcEEEecCCc
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVI-SKFSRLKELYMGDSF 279 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l-~~l~~L~~L~l~~~~ 279 (686)
|++++|.++. +. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.
T Consensus 104 L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc
Confidence 5555555544 21 124455555555555554433 34555555555555554 443322212 245555555555554
Q ss_pred c
Q 005634 280 S 280 (686)
Q Consensus 280 ~ 280 (686)
+
T Consensus 181 l 181 (317)
T 3o53_A 181 I 181 (317)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.5e-17 Score=163.29 Aligned_cols=171 Identities=26% Similarity=0.364 Sum_probs=146.6
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
..+++.|++++|.+..++....+++|++|++++|. ...++. +.++++|++|++++|.++.+|. ++.+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~----l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK----LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc----cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 56689999999999888776689999999999998 344555 5899999999999999988765 8899999999
Q ss_pred EccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 204 CLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 204 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
++++|.++.+..++.+++|++|++++|.++.+ ..++.+++|++|++++|. ++.+++ ++.+++|++|++++|.+.
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC--
Confidence 99999988877889999999999999999988 578999999999999987 888876 889999999999999875
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCCCcC
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDAQIL 315 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 315 (686)
.+..+..+++|+.|++++|.+...
T Consensus 192 --------~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 --------DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred --------CChhhccCCCCCEEECcCCcccCC
Confidence 234588899999999998875543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=7.8e-17 Score=162.30 Aligned_cols=179 Identities=20% Similarity=0.311 Sum_probs=155.6
Q ss_pred hhcccCCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcC
Q 005634 118 KMEETIQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRL 197 (686)
Q Consensus 118 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 197 (686)
++......++++|++++|.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.++.+|. +..+
T Consensus 56 l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l----~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL----KNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC----SCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC----CCchh--hcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 344455789999999999998888855899999999999983 34542 5899999999999999999875 8999
Q ss_pred CCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 198 INLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 198 ~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
++|++|++++|.++....++.+++|++|++++|.++.++. +.++++|++|++++|. ++.++. +..+++|++|++++
T Consensus 129 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccC
Confidence 9999999999999885459999999999999999999887 9999999999999998 888886 89999999999999
Q ss_pred CccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCC
Q 005634 278 SFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
|.+. .+..+..+++|+.|++++|.+...|.
T Consensus 205 N~l~----------~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 205 NQIS----------DVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp SCCC----------BCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred CccC----------ccccccCCCCCCEEEccCCeeecCCe
Confidence 9876 22258899999999999998766544
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=9.4e-18 Score=162.67 Aligned_cols=199 Identities=14% Similarity=0.231 Sum_probs=153.7
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecC-ccCCCCc
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNR-IHFSSLP 191 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp 191 (686)
...+|. ...++++|++++|.+..++.. + .+++|++|++++|. ....++...|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~---~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV---TLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS---SCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC---CcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 444555 566899999999999888763 3 78999999999985 35567776678899999999998 8888776
Q ss_pred h-hhhcCCCCcEEEccCCCCCCcccccCCCCCC---EEEccCC-CCCCcchh-hcCCCCCC-EEeCcCCcCccccChhhh
Q 005634 192 S-SLGRLINLQTLCLDGCGLKDIAIVGQLKKLE---ILSLRDS-KIKQLPLE-IGQLTRLQ-LLDLSDCRSLVVIAPNVI 264 (686)
Q Consensus 192 ~-~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l 264 (686)
. .+.++++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. ++.+|...+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~ 176 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF 176 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence 4 5788999999999999988833388888887 9999999 88888764 78899999 99999887 778888743
Q ss_pred cCCCCCcEEEecCCc-cccccccCCCccchhhhCCC-CCccEEEEeecCCCcCCCcccccCccEEEE
Q 005634 265 SKFSRLKELYMGDSF-SQWDKVKGGRNASLAELKGL-SKLTTLEIQVRDAQILPQDLVFVELQRYRI 329 (686)
Q Consensus 265 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 329 (686)
..++|++|++++|. +.. .....+..+ ++|+.|++++|.+..+|.. .+.+|+.|.+
T Consensus 177 -~~~~L~~L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 177 -NGTKLDAVYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -TTCEEEEEECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCCCEEEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 44889999999884 541 112346677 8899999998888877765 5566666553
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=7.4e-17 Score=157.54 Aligned_cols=174 Identities=22% Similarity=0.337 Sum_probs=143.2
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEE
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLC 204 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~ 204 (686)
..++++++++.+..+|..+. ++++.|++++|. ...++...|.++++|++|++++|.++.++. .+.++++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCC----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35678899999988887653 689999999998 345565556899999999999999987654 478999999999
Q ss_pred ccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 205 LDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 205 L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+++|.++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|.+.++++++|++|++++|.+.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999888 4 6788999999999999999988876 5889999999999987 88888866889999999999999875
Q ss_pred cccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 282 WDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 282 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
......+..+++|+.|++++|...
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 112235778889999999988654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=9.4e-17 Score=159.35 Aligned_cols=188 Identities=18% Similarity=0.242 Sum_probs=148.1
Q ss_pred EEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCC
Q 005634 130 ISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGC 208 (686)
Q Consensus 130 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~ 208 (686)
++..+..+..+|..+ .++|++|++++|. ...++...|.++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 445555667777654 3679999999998 445666566899999999999999987665 6899999999999999
Q ss_pred CCCC--cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccc--cChhhhcCCCCCcEEEecCCccccc
Q 005634 209 GLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVV--IAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 209 ~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
.++. +..++++++|++|++++|.++.++. .++++++|++|++++|. ++. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 9887 4789999999999999999998766 68999999999999998 666 5665 89999999999999987621
Q ss_pred cccCCCccchhhhCCCCCcc-EEEEeecCCCcCCCcc-cccCccEEEE
Q 005634 284 KVKGGRNASLAELKGLSKLT-TLEIQVRDAQILPQDL-VFVELQRYRI 329 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~-~l~~L~~L~l 329 (686)
....+..+.+++.|. .|++++|.+..++... ...+|+.|++
T Consensus 165 -----~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 165 -----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp -----CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred -----CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence 123455566666666 8999998877766544 3334555544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.4e-16 Score=157.61 Aligned_cols=174 Identities=23% Similarity=0.291 Sum_probs=141.4
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~ 202 (686)
..+++.+++.++.+..++....+++|++|++++|.+ ..++ .+.++++|++|++++|.++.+|.. ++++++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l----~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL----HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC----CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCC----CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 567899999999988887766899999999999883 2343 357899999999999998877654 688999999
Q ss_pred EEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc
Q 005634 203 LCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 203 L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 279 (686)
|++++|.++. + ..++.+++|++|++++|.++.+|.. ++++++|++|++++|. ++.++...++++++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence 9999999887 4 5578999999999999999887765 5889999999999987 788887767889999999999987
Q ss_pred cccccccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 280 SQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
+. ......++.+++|+.|++++|..
T Consensus 193 l~--------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LK--------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CS--------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC--------ccCHHHHhCCcCCCEEEccCCCc
Confidence 65 11223467888899999887753
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=3.2e-18 Score=173.05 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=115.2
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCC--CCchhhh-------cCCCCcEEEccCCCCCC--c
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFS--SLPSSLG-------RLINLQTLCLDGCGLKD--I 213 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~-------~l~~Lr~L~L~~~~l~~--~ 213 (686)
..++|+.|++++|. . .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++. |
T Consensus 41 ~~~~L~~l~l~~n~---l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT---E--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEECTTHHHHCCT---T--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred cCCCceeEeecccc---c--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 45677888888887 3 677766433 788888888875 4676665 78899999999998775 6
Q ss_pred ccc--cCCCCCCEEEccCCCCCCcchhhcCC-----CCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccccc
Q 005634 214 AIV--GQLKKLEILSLRDSKIKQLPLEIGQL-----TRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVK 286 (686)
Q Consensus 214 ~~i--~~L~~L~~L~l~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 286 (686)
..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 187 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELG---- 187 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCH----
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCc----
Confidence 655 88999999999999888778777777 889999999887 777775558889999999998887531
Q ss_pred CCCccchhhh--CCCCCccEEEEeecCCC
Q 005634 287 GGRNASLAEL--KGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 287 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 313 (686)
....+..+ +.+++|++|++++|.+.
T Consensus 188 --~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 188 --ERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp --HHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred --chHHHHHHHhccCCCCCEEECCCCcCc
Confidence 01123344 77788888888876543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1e-16 Score=159.77 Aligned_cols=182 Identities=17% Similarity=0.149 Sum_probs=154.9
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS 192 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 192 (686)
+..+|. ....+++.|++++|.+..++.. + .+++|++|++++|. ...++.. +.+++|++|++++|.++.+|.
T Consensus 22 l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 22 LTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVD--GTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp CSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC----CCEEECC--SCCTTCCEEECCSSCCSSCCC
T ss_pred CCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc----cCcccCC--CCCCcCCEEECCCCcCCcCch
Confidence 344443 3457899999999999777543 3 89999999999998 3345543 689999999999999999999
Q ss_pred hhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCC
Q 005634 193 SLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSR 269 (686)
Q Consensus 193 ~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 269 (686)
.+..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|.+.+.++++
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLEN 173 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCC
Confidence 99999999999999999988 4 7799999999999999999988876 5889999999999998 89999887789999
Q ss_pred CcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 270 LKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
|++|++++|.+. ..+..+....+|+.+++++|...
T Consensus 174 L~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 174 LDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCC---------ccChhhcccccCCeEEeCCCCcc
Confidence 999999999875 34455667778999999988653
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.8e-18 Score=170.67 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=129.3
Q ss_pred CEEEEccCCCCCC--CCCcC--------CCCCcceEEcccCCCcccccccchhHh-cCCCCccEEEecCccCCCCchhhh
Q 005634 127 PIAISLPRRDIQE--LPKRL--------QCPHLQLFLLITKGIAPVSMQISDLFF-EGTEELKVLSLNRIHFSSLPSSLG 195 (686)
Q Consensus 127 l~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~l~ 195 (686)
+++|++++|.+.. ++... ++++|++|++++|. ..+.+|..++ ..+++|++|++++|.++.+|..++
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA 141 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH
Confidence 5555666665522 33222 47788888888877 4445666543 677888888888888877777776
Q ss_pred cC-----CCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCC---cchhh--cCCCCCCEEeCcCCcCcc---ccC
Q 005634 196 RL-----INLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQ---LPLEI--GQLTRLQLLDLSDCRSLV---VIA 260 (686)
Q Consensus 196 ~l-----~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~---lp~~i--~~L~~L~~L~l~~~~~l~---~lp 260 (686)
.+ ++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..+ +++++|++|++++|. ++ .++
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 220 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC 220 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH
Confidence 66 788888888888776 3 677888888888888887653 34555 778888888888876 65 333
Q ss_pred hhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEe
Q 005634 261 PNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICI 331 (686)
Q Consensus 261 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 331 (686)
...+.++++|++|++++|.+... . ....+..+++|+.|++++|.+..+|..+. .+|+.|+++.
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~------~-~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~ 283 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDA------A-GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSY 283 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSS------C-CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCS
T ss_pred HHHHhcCCCCCEEECCCCcCCcc------c-chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCC
Confidence 34345778888888888776511 0 11334556778888888887777776554 5566655543
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=3.7e-17 Score=161.67 Aligned_cols=181 Identities=18% Similarity=0.257 Sum_probs=151.8
Q ss_pred hhcccCCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhc
Q 005634 118 KMEETIQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGR 196 (686)
Q Consensus 118 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~ 196 (686)
++.....+++++|++++|.+..++....+++|++|++++|. ...++...+.++++|++|++++|.++.+|.. +++
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ----LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc----cCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 34445578999999999999888766689999999999998 4567777779999999999999999987765 789
Q ss_pred CCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEE
Q 005634 197 LINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKEL 273 (686)
Q Consensus 197 l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 273 (686)
+++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+++..++++++|++|
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEE
Confidence 9999999999999888 4 5579999999999999999988765 6899999999999998 888887768999999999
Q ss_pred EecCCccccccccCCCccchhhhCCCCCccEEEEeecCC-CcCCCc
Q 005634 274 YMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA-QILPQD 318 (686)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~ 318 (686)
++++|.+. +.+++|+.|++..+.. +.+|..
T Consensus 211 ~l~~N~~~---------------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 211 WLHDNPWD---------------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp ECCSSCBC---------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred EccCCCcc---------------ccCcHHHHHHHHHHhCCCcccCc
Confidence 99999764 3455677777776653 344443
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.4e-16 Score=157.26 Aligned_cols=182 Identities=21% Similarity=0.292 Sum_probs=153.5
Q ss_pred EccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCC
Q 005634 131 SLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGL 210 (686)
Q Consensus 131 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l 210 (686)
.+..+.+..+....++++|++|++++|. ...++. +..+++|++|++++|.++.++. ++++++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~----i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSD----IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSC----CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HhcCCCcccccchhhcCcccEEEccCCC----cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 3444444444444478999999999998 344544 5889999999999999999887 99999999999999999
Q ss_pred CCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCc
Q 005634 211 KDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRN 290 (686)
Q Consensus 211 ~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 290 (686)
+.++.++.+++|++|++++|.++.++ .+..+++|++|++++|. ++.++. ++++++|++|++++|.+.
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~--------- 169 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS--------- 169 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC---------
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc---------
Confidence 99777999999999999999999984 69999999999999998 888853 899999999999999875
Q ss_pred cchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecC
Q 005634 291 ASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGE 333 (686)
Q Consensus 291 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.+..+..+++|+.|++++|.+..++....+.+|+.|++..+.
T Consensus 170 -~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 -DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -cchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 122388999999999999998888764588889998887654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=6e-17 Score=157.01 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=148.8
Q ss_pred CCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCcc-CCCCch-hhhcCCCCcEEEccC-CCCCC
Q 005634 136 DIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIH-FSSLPS-SLGRLINLQTLCLDG-CGLKD 212 (686)
Q Consensus 136 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~l~~l~~Lr~L~L~~-~~l~~ 212 (686)
.+..+|. -.+++++|++++|. ...++...|+++++|++|++++|. ++.+|. .+.++++|++|++++ |.++.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred CccccCC--CCCcccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 3777777 34589999999998 556777677999999999999997 888775 688999999999999 78888
Q ss_pred -c-ccccCCCCCCEEEccCCCCCCcchhhcCCCCCC---EEeCcCCcCccccChhhhcCCCCCc-EEEecCCcccccccc
Q 005634 213 -I-AIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQ---LLDLSDCRSLVVIAPNVISKFSRLK-ELYMGDSFSQWDKVK 286 (686)
Q Consensus 213 -~-~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~l~~l~~L~-~L~l~~~~~~~~~~~ 286 (686)
+ ..+..+++|++|++++|.++.+|. ++.+++|+ +|++++|..++.+|...+.++++|+ +|++++|.+..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~---- 170 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---- 170 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE----
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc----
Confidence 4 678999999999999999999987 88899998 9999999449999987789999999 99999998751
Q ss_pred CCCccchhhhCCCCCccEEEEeecC-CCcCCCcc--cc-cCccEEEEEecC
Q 005634 287 GGRNASLAELKGLSKLTTLEIQVRD-AQILPQDL--VF-VELQRYRICIGE 333 (686)
Q Consensus 287 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~--~l-~~L~~L~l~~~~ 333 (686)
.+......++|+.|++++|. +..++... .+ .+|+.|++..+.
T Consensus 171 -----i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 171 -----VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp -----ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred -----cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 11222223689999999995 88776654 56 778777765433
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=6.5e-16 Score=150.81 Aligned_cols=161 Identities=23% Similarity=0.325 Sum_probs=139.1
Q ss_pred hhhhhcccCCCCCEEEEccCCCCCCCCCc-C-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch
Q 005634 115 VKKKMEETIQKDPIAISLPRRDIQELPKR-L-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS 192 (686)
Q Consensus 115 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 192 (686)
...+|. ....+++.|++++|.+..++.. + ++++|++|++++|. ...++...|.++++|++|++++|.++.+|.
T Consensus 26 l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 26 LDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc----CCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 344443 3457899999999999777653 3 89999999999998 445666667999999999999999998774
Q ss_pred -hhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCC
Q 005634 193 -SLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFS 268 (686)
Q Consensus 193 -~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 268 (686)
.+..+++|++|++++|.++. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++|. ++.++...+.+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 57899999999999999988 4 557999999999999999998887 58999999999999998 8888876689999
Q ss_pred CCcEEEecCCccc
Q 005634 269 RLKELYMGDSFSQ 281 (686)
Q Consensus 269 ~L~~L~l~~~~~~ 281 (686)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999875
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3.2e-16 Score=171.38 Aligned_cols=173 Identities=26% Similarity=0.371 Sum_probs=149.9
Q ss_pred CCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 123 IQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
.+..++.|++++|.+..++....+++|+.|++++|. ...++. +..+++|+.|+|++|.+..+| .++.+++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~----l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK----LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC----CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC----CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 356789999999999888876689999999999998 334555 589999999999999998877 6899999999
Q ss_pred EEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccc
Q 005634 203 LCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQW 282 (686)
Q Consensus 203 L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 282 (686)
|+|++|.+..++.+..+++|+.|+|++|.++.+ ..++.+++|++|+|++|. +..+++ +..+++|++|++++|.+.
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~- 188 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS- 188 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC-
Confidence 999999998877799999999999999999988 679999999999999998 777776 899999999999999875
Q ss_pred ccccCCCccchhhhCCCCCccEEEEeecCCCcCC
Q 005634 283 DKVKGGRNASLAELKGLSKLTTLEIQVRDAQILP 316 (686)
Q Consensus 283 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 316 (686)
.+..+..+++|+.|++++|.+...|
T Consensus 189 ---------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 ---------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ---------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred ---------CChHHccCCCCCEEEccCCcCcCCc
Confidence 2356889999999999988765544
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.2e-16 Score=169.42 Aligned_cols=168 Identities=19% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCCEEEEccCCCCCCCCC-cC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 125 KDPIAISLPRRDIQELPK-RL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
.++++|++++|.+..+++ .+ .+++|++|++++|. ... +++ +..+++|++|++++|.++.+|. .++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---LYE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC---CEE-EEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC---CCC-Ccc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 367788888877766653 23 67778888887777 222 222 4677778888888777776553 267778
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCcccc-Chhhhc-CCCCCcEEEecCC
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVI-APNVIS-KFSRLKELYMGDS 278 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~~l~-~l~~L~~L~l~~~ 278 (686)
|++++|.++. +. ..+++|++|++++|.++.+ |..++++++|++|++++|. ++.+ |.. +. .+++|++|++++|
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-LAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGG-GGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHH-HhhhCCcccEEecCCC
Confidence 8888777776 32 2356777788877777765 4467777778888887776 5443 433 43 6777778877777
Q ss_pred ccccccccCCCccchhhhCCCCCccEEEEeecCCCcCC
Q 005634 279 FSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILP 316 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 316 (686)
.+. .+.....+++|+.|++++|.+..+|
T Consensus 180 ~l~----------~~~~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 180 FIY----------DVKGQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CCC----------EEECCCCCTTCCEEECCSSCCCEEC
T ss_pred ccc----------cccccccCCCCCEEECCCCCCCCCC
Confidence 764 1223345677777777776655443
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=4.2e-16 Score=167.26 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=74.5
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEc
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSL 227 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l 227 (686)
+|++|++++|. ...+++..|.++++|++|++++|.++..++ ++.+++|++|++++|.++... ..++|++|++
T Consensus 35 ~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred CccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence 45555555554 222333333455555555555555443332 445555555555555444311 1145555555
Q ss_pred cCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhC-CCCCccEEE
Q 005634 228 RDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELK-GLSKLTTLE 306 (686)
Q Consensus 228 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ 306 (686)
++|.++.+|. ..+++|++|++++|. ++.+++..++++++|++|++++|.+.. ..+..+. .+++|+.|+
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHLN 175 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCE--------EEGGGGGGGTTTCCEEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCC--------cChHHHhhhCCcccEEe
Confidence 5555554433 234455555555544 343332224455555555555554431 1122222 344555555
Q ss_pred EeecCCCcCCCcccccCccEEEEEec
Q 005634 307 IQVRDAQILPQDLVFVELQRYRICIG 332 (686)
Q Consensus 307 l~~~~~~~~~~~~~l~~L~~L~l~~~ 332 (686)
+++|.+..++....+++|+.|+++.+
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred cCCCccccccccccCCCCCEEECCCC
Confidence 55555444443334445555554433
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=7e-16 Score=145.90 Aligned_cols=170 Identities=18% Similarity=0.271 Sum_probs=136.7
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L~ 206 (686)
+.++..++.+..+|... .++|++|++++|. ...++...|+++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNS----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCc----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45677777777777554 5689999999998 4467777778999999999999999887764 6889999999999
Q ss_pred CCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccc
Q 005634 207 GCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWD 283 (686)
Q Consensus 207 ~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 283 (686)
+|.++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|. ++.++...++++++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee--
Confidence 999888 4 5578999999999999999988775 6889999999999987 88888776788999999999998654
Q ss_pred cccCCCccchhhhCCCCCccEEEEeecCC-CcCCCc
Q 005634 284 KVKGGRNASLAELKGLSKLTTLEIQVRDA-QILPQD 318 (686)
Q Consensus 284 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~ 318 (686)
+.+++|+.|++..+.. +.+|..
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -------------cCCCCHHHHHHHHHhCCceeecc
Confidence 3456777777776653 345543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=9e-16 Score=143.65 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC-CchhhhcCCCCcEE
Q 005634 125 KDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-LPSSLGRLINLQTL 203 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~Lr~L 203 (686)
.++++|++++|.+..++....+++|++|++++|. ...++ .+..+++|++|++++|.++. .|..++.+++|++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~----~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH----ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC----CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCC----CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455555555555544432245555555555543 11121 12445555555555554442 33444445555555
Q ss_pred EccCCCCCC--cccccCCCCCCEEEccCCC-CCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc
Q 005634 204 CLDGCGLKD--IAIVGQLKKLEILSLRDSK-IKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 204 ~L~~~~l~~--~~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 279 (686)
++++|.++. +..++.+++|++|++++|. ++.+| .+..+++|++|++++|. ++.++. +..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 555555443 3444455555555555553 44443 34444555555555444 444442 4444555555544443
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2.2e-15 Score=144.59 Aligned_cols=149 Identities=22% Similarity=0.276 Sum_probs=126.8
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L 205 (686)
.+.++.+++.+..+|..+ .++|++|++++|. ...++...|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 346888888888888755 4899999999998 3445555568999999999999999888754 688999999999
Q ss_pred cCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 206 DGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 206 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
++|.++. + ..+..+++|++|++++|.++.+|..+.++++|++|++++|. ++.+|...+..+++|++|++.+|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999888 4 55789999999999999999999999999999999999987 88888776888999999999988765
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.1e-15 Score=149.84 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=132.6
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
++..+++..+.+..++...++++|++|++++|. ...++ . ++.+++|++|++++|.++.+|. ++++++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~----i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN----IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC----CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCC----cccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 345556677777766654478888999998887 33455 2 4788899999999999888877 888999999999
Q ss_pred cCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccc
Q 005634 206 DGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKV 285 (686)
Q Consensus 206 ~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 285 (686)
++|.++..+.+.. .+|++|++++|.++.++ .++++++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~---- 163 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT---- 163 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC----
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc----
Confidence 9998888333444 88999999999988875 58889999999999887 788874 888999999999988875
Q ss_pred cCCCccchhhhCCCCCccEEEEeecCCCcCC
Q 005634 286 KGGRNASLAELKGLSKLTTLEIQVRDAQILP 316 (686)
Q Consensus 286 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 316 (686)
.+..+..+++|+.|++++|.....|
T Consensus 164 ------~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ------NTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------BCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------chHHhccCCCCCEEeCCCCcccCCc
Confidence 1256788888999999888755443
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=156.59 Aligned_cols=193 Identities=18% Similarity=0.135 Sum_probs=123.8
Q ss_pred CCCEEEEccCCCCC-CCCCc---CCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCC
Q 005634 125 KDPIAISLPRRDIQ-ELPKR---LQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLIN 199 (686)
Q Consensus 125 ~~l~~l~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~ 199 (686)
.++++|++++|.+. ..|.. ..+++|++|++++|.+......++...+..+++|++|++++|.+..++ ..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 44778888887773 34433 357788888888877332111122222346778888888888776554 46777788
Q ss_pred CcEEEccCCCCCC------cccccCCCCCCEEEccCCCCCCcchh----hcCCCCCCEEeCcCCcCcccc-ChhhhcCC-
Q 005634 200 LQTLCLDGCGLKD------IAIVGQLKKLEILSLRDSKIKQLPLE----IGQLTRLQLLDLSDCRSLVVI-APNVISKF- 267 (686)
Q Consensus 200 Lr~L~L~~~~l~~------~~~i~~L~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l- 267 (686)
|++|++++|.+.. ...++.+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+ |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 8888888887542 12346777888888888877766553 4667788888888877 5554 554 5555
Q ss_pred --CCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEE
Q 005634 268 --SRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRIC 330 (686)
Q Consensus 268 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 330 (686)
++|++|++++|.+. . .+..+. ++|+.|++++|.+..+|....+++|+.|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~------~---lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE------Q---VPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCTTCCCEECCSSCCC------S---CCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CcCcCCEEECCCCCCC------c---hhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 57888888877765 1 122222 5777888887777766553455666666543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.7e-15 Score=141.82 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=130.4
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKL 222 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L 222 (686)
++++|++|++++|. ...+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|
T Consensus 42 ~l~~L~~L~l~~n~----i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANIN----VTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSC----CSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCC----ccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 68899999999998 34666 3 489999999999999887765 68999999999999999886 7899999999
Q ss_pred CEEEccCCCCCC-cchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCC
Q 005634 223 EILSLRDSKIKQ-LPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSK 301 (686)
Q Consensus 223 ~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 301 (686)
++|++++|.++. .|..++++++|++|++++|..++.+|. ++++++|++|++++|.+. .+..+..+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~ 182 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPK 182 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSS
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCC
Confidence 999999999984 788899999999999999976888884 899999999999999875 2337888999
Q ss_pred ccEEEEeecCCC
Q 005634 302 LTTLEIQVRDAQ 313 (686)
Q Consensus 302 L~~L~l~~~~~~ 313 (686)
|+.|++++|.++
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999998765
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.4e-16 Score=160.27 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=46.2
Q ss_pred CCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC---cccccCCCCCCEEEccCCCCC-CcchhhcCCCCCCEEeC
Q 005634 175 EELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD---IAIVGQLKKLEILSLRDSKIK-QLPLEIGQLTRLQLLDL 250 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l 250 (686)
+++++|++++|.+...+..+.++++|++|++++|.+.. +..+..+++|++|++++|.++ ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 44444444444444333334444445555554444332 233444445555555544444 33444444455555555
Q ss_pred cCCcCccc--cChhhhcCCCCCcEEEecCC
Q 005634 251 SDCRSLVV--IAPNVISKFSRLKELYMGDS 278 (686)
Q Consensus 251 ~~~~~l~~--lp~~~l~~l~~L~~L~l~~~ 278 (686)
++|..++. ++.. ++++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 54422332 2322 444455555555444
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=1.6e-15 Score=165.97 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=155.3
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccC
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDG 207 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~ 207 (686)
..+.+..+.+..+.....+++|+.|++.+|. ...++. ++.+++|+.|+|++|.+..+|. +..+++|++|+|++
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~----i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSD----IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCC----CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCC----CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3344555555555555578999999999998 345553 5899999999999999999887 89999999999999
Q ss_pred CCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccC
Q 005634 208 CGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKG 287 (686)
Q Consensus 208 ~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 287 (686)
|.+..++.++.+++|++|++++|.++.+| .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------ 166 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------ 166 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------
Confidence 99999778999999999999999999885 59999999999999998 888854 899999999999999875
Q ss_pred CCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecC
Q 005634 288 GRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGE 333 (686)
Q Consensus 288 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.+..+..+++|+.|++++|.+..++....+.+|+.|.+..+.
T Consensus 167 ----~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 167 ----DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ----CchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 122388999999999999998888654588889988876544
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2.8e-15 Score=142.73 Aligned_cols=148 Identities=22% Similarity=0.291 Sum_probs=115.2
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~ 206 (686)
+.++.+++.+..+|..+. ++++.|++++|. ...++...|..+++|++|++++|.++.+ |..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 467777888887876543 678888888887 4456665668888888888888888765 6678888888888888
Q ss_pred CCCCCC-c-ccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 207 GCGLKD-I-AIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 207 ~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+|.++. | ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. ++.++.+.+..+++|++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888877 4 4467888888888888888866 4567888888888888887 77777766778888888888887654
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=157.50 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=149.4
Q ss_pred CCCEEEEccCCCCCC-----CCCcCCCCCcceEEcccCCCcccccccchhHh-cCCCCccEEEecCccCCC-Cc----hh
Q 005634 125 KDPIAISLPRRDIQE-----LPKRLQCPHLQLFLLITKGIAPVSMQISDLFF-EGTEELKVLSLNRIHFSS-LP----SS 193 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~-lp----~~ 193 (686)
..++++.+.++.+.. +.....+++|++|++++|. .....|..++ .++++|++|++++|.+.. .| ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 357788888776621 2222356789999999998 4555666544 789999999999999875 22 34
Q ss_pred hhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCC---cchh--hcCCCCCCEEeCcCCcCccccChh---h
Q 005634 194 LGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQ---LPLE--IGQLTRLQLLDLSDCRSLVVIAPN---V 263 (686)
Q Consensus 194 l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~ 263 (686)
+..+++|++|++++|.+.. +..++.+++|++|++++|.+.. ++.. ++++++|++|++++|. ++.++.. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 5679999999999999877 4789999999999999998764 4333 3789999999999998 7766542 3
Q ss_pred hcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcccccCccEEEEEecC
Q 005634 264 ISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDLVFVELQRYRICIGE 333 (686)
Q Consensus 264 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 333 (686)
++.+++|++|++++|.+.. ..+..+..+..+++|++|++++|.+..+|..+. ++|+.|+++.+.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~ 283 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRA-----TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNR 283 (310)
T ss_dssp HHHTCCCSSEECTTSCCCC-----CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCC
T ss_pred HhcCCCCCEEECCCCCCCc-----cchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCc
Confidence 5788999999999998761 112223334444799999999999888887664 677777765444
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=142.66 Aligned_cols=149 Identities=14% Similarity=0.241 Sum_probs=115.8
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEcc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLD 206 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~ 206 (686)
+.++++++.+..+|..+ .+.+++|++++|. .....+..+|.++++|++|++++|.++.++. .+.++++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc---CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47888888888887654 4566888888887 2322244556888888888888888887655 68888888888888
Q ss_pred CCCCCC-c-ccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 207 GCGLKD-I-AIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 207 ~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+|.++. + ..++.+++|++|++++|.++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888877 3 5688888888888888888866 5668888888888888887 77775555788888888888888764
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.2e-15 Score=153.60 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--c-ccccCCCCCCE-EEccCCCCCCcc-hhhcCCCCCCEE
Q 005634 175 EELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--I-AIVGQLKKLEI-LSLRDSKIKQLP-LEIGQLTRLQLL 248 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~-~~i~~L~~L~~-L~l~~~~i~~lp-~~i~~L~~L~~L 248 (686)
++++.|+|++|.++.+|. .|.++++|++|+|++|.+.+ + ..+.++++|++ +.+.+|+++.+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 455666666666666654 35666666666666666433 2 34556666554 334445666553 335666666666
Q ss_pred eCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 249 DLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 249 ~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
++++|. +..+|........++..|++.+
T Consensus 110 ~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred cccccc-cccCCchhhcccchhhhhhhcc
Confidence 666665 5555543334445555666544
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.1e-14 Score=147.54 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=69.2
Q ss_pred cEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCC-Ccch-hhcCCCCCCEEeCcCC
Q 005634 178 KVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIK-QLPL-EIGQLTRLQLLDLSDC 253 (686)
Q Consensus 178 r~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~-~lp~-~i~~L~~L~~L~l~~~ 253 (686)
++++.++++++++|..+ .+++++|+|++|+|+. | ..|.++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777888888888765 3577888888888777 4 45777888888888887764 3544 3567777766544443
Q ss_pred cCccccChhhhcCCCCCcEEEecCCccc
Q 005634 254 RSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 254 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
..+..++++.++.+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 3377776655667777777777666543
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.3e-15 Score=159.15 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=138.0
Q ss_pred CCCCEEEEccCCCCCCC-----CCcC-CCCCcceEEcccCCCcccccccchhH------hcCCCCccEEEecCccCCC--
Q 005634 124 QKDPIAISLPRRDIQEL-----PKRL-QCPHLQLFLLITKGIAPVSMQISDLF------FEGTEELKVLSLNRIHFSS-- 189 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~-- 189 (686)
.+++++|++++|.+... +..+ .+++|++|++++|.+......+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 56789999999987442 2223 68999999999876443444556554 4788999999999999875
Q ss_pred ---CchhhhcCCCCcEEEccCCCCCC--ccc----ccCC---------CCCCEEEccCCCCC--Ccc---hhhcCCCCCC
Q 005634 190 ---LPSSLGRLINLQTLCLDGCGLKD--IAI----VGQL---------KKLEILSLRDSKIK--QLP---LEIGQLTRLQ 246 (686)
Q Consensus 190 ---lp~~l~~l~~Lr~L~L~~~~l~~--~~~----i~~L---------~~L~~L~l~~~~i~--~lp---~~i~~L~~L~ 246 (686)
+|..+.++++|++|++++|.+.. +.. +..+ ++|++|++++|.++ .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 77888999999999999999864 333 3334 89999999999887 455 4677889999
Q ss_pred EEeCcCCcCccc-----cChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCc
Q 005634 247 LLDLSDCRSLVV-----IAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 247 ~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 314 (686)
+|++++|. ++. +.+..+.++++|++|++++|.+... .....+..+..+++|+.|++++|.+..
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCcCEEECCCCCCch
Confidence 99999987 552 2221278899999999999876310 012234567888899999999887654
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=1.8e-15 Score=154.90 Aligned_cols=174 Identities=21% Similarity=0.329 Sum_probs=140.3
Q ss_pred CCCEEEEccCCCCCCCC-CcCCCCCcceEEcccCCCcccccc-cchhHhcCCCCccEEEecCccCC-CCchhhhcCCCCc
Q 005634 125 KDPIAISLPRRDIQELP-KRLQCPHLQLFLLITKGIAPVSMQ-ISDLFFEGTEELKVLSLNRIHFS-SLPSSLGRLINLQ 201 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~Lr 201 (686)
.+++.+++.++.+...+ ....+++|++|++++|. .... ++. ++..+++|++|++++|.+. ..|..++++++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~---l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV---IEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE---ECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC---cCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 56889999999885544 34489999999999997 3333 444 4589999999999999887 5777889999999
Q ss_pred EEEccCC-CCCC---cccccCCCCCCEEEccCC-CCCC--cchhhcCCC-CCCEEeCcCCc-Cc--cccChhhhcCCCCC
Q 005634 202 TLCLDGC-GLKD---IAIVGQLKKLEILSLRDS-KIKQ--LPLEIGQLT-RLQLLDLSDCR-SL--VVIAPNVISKFSRL 270 (686)
Q Consensus 202 ~L~L~~~-~l~~---~~~i~~L~~L~~L~l~~~-~i~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~lp~~~l~~l~~L 270 (686)
+|++++| .+++ +..+.++++|++|++++| .++. ++..+.+++ +|++|++++|. .+ ..+|.. ++++++|
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L 224 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNL 224 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTC
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCC
Confidence 9999999 5774 456888999999999999 8884 788889999 99999999985 23 445654 7889999
Q ss_pred cEEEecCCc-cccccccCCCccchhhhCCCCCccEEEEeecC
Q 005634 271 KELYMGDSF-SQWDKVKGGRNASLAELKGLSKLTTLEIQVRD 311 (686)
Q Consensus 271 ~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 311 (686)
++|++++|. +. ...+..+.++++|+.|++++|.
T Consensus 225 ~~L~l~~~~~l~--------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 225 VHLDLSDSVMLK--------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SEEECTTCTTCC--------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CEEeCCCCCcCC--------HHHHHHHhCCCCCCEeeCCCCC
Confidence 999999997 33 2345677888999999999885
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1e-14 Score=142.95 Aligned_cols=147 Identities=23% Similarity=0.292 Sum_probs=130.6
Q ss_pred CCCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 123 IQKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
...+++.|++++|.+..++....+++|++|++++|. ...++. +.++++|++|++++|.++.+|... . ++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~----i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ----ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc----cCCChh--hccCCCCCEEECCCCccCCcCccc-c-CcccE
Confidence 367799999999999988865589999999999998 445665 689999999999999999887643 3 99999
Q ss_pred EEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 203 LCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 203 L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
|++++|.++.++.++++++|++|++++|.++.+| .++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 9999999999777999999999999999999997 79999999999999998 777743 899999999999999865
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=2.4e-14 Score=154.78 Aligned_cols=171 Identities=17% Similarity=0.241 Sum_probs=133.6
Q ss_pred CCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEc
Q 005634 126 DPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCL 205 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L 205 (686)
+++.|++++|.+..+|..+ .++|++|++++|. ...+| ..+++|++|++++|.++.+|. +++ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~----l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNA----LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC----CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCC----Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 6888999999888888765 4889999999988 33666 357889999999999988887 655 8999999
Q ss_pred cCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcccccc
Q 005634 206 DGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDK 284 (686)
Q Consensus 206 ~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 284 (686)
++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|++|++++|.+.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~--- 193 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE--- 193 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS---
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC---
Confidence 9999888 55 68899999999999988886 67889999999987 788887 55 88999999998775
Q ss_pred ccCCCccchhhhCCCCCc-------cEEEEeecCCCcCCCcc-cccCccEEEEEe
Q 005634 285 VKGGRNASLAELKGLSKL-------TTLEIQVRDAQILPQDL-VFVELQRYRICI 331 (686)
Q Consensus 285 ~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~ 331 (686)
..+. +.. +| +.|++++|.+..+|..+ .+++|+.|++..
T Consensus 194 ---~lp~----~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 194 ---SLPA----VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp ---SCCC----CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred ---chhh----HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 1122 222 45 88999999888888765 666777666543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=150.32 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=124.4
Q ss_pred EEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhc-CCCCccEEEecCccCCCCc-hhhhcCCCCcEEEc
Q 005634 128 IAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFE-GTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCL 205 (686)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L 205 (686)
+.++++++.+..+|..+ .+.++.|++++|. ...++...|. ++.+|++|++++|.++.++ ..+.++++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 46788888887787654 3467888888887 4456666566 8888888888888888765 45788888888888
Q ss_pred cCCCCCC-c-ccccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCCcCccccChhhh---cCCCCCcEEEecCCc
Q 005634 206 DGCGLKD-I-AIVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDCRSLVVIAPNVI---SKFSRLKELYMGDSF 279 (686)
Q Consensus 206 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~l~~L~~L~l~~~~ 279 (686)
++|.++. + ..+..+++|++|++++|.|+.+ |..+..+++|++|++++|. ++.+|...+ +.+++|++|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 8888877 3 5678888888888888888866 4568888888888888887 788887644 568888888888887
Q ss_pred cccccccCCCccchhhhCCCCC--ccEEEEeecC
Q 005634 280 SQWDKVKGGRNASLAELKGLSK--LTTLEIQVRD 311 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 311 (686)
+.. -....+..++. ++.|++.+|.
T Consensus 175 l~~--------l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKK--------LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCC--------CCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCc--------cCHHHhhhccHhhcceEEecCCC
Confidence 651 11234555554 3667776654
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2e-14 Score=136.79 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=117.9
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILS 226 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~ 226 (686)
+.+++.++. ...+|..+ ...|+.|++++|.++.+|. .+..+++|++|++++|.++. |..+.++++|++|+
T Consensus 14 ~~v~c~~~~----l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKG----LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSC----CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCC----cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 567777776 55677654 2678999999999987765 68889999999999999877 57889999999999
Q ss_pred ccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEE
Q 005634 227 LRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTL 305 (686)
Q Consensus 227 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 305 (686)
+++|.++.+|.. +..+++|++|++++|. ++.+++..++.+++|++|++++|.+.. .....+..+++|+.|
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT--------IAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE--------ECHHHHhCCCCCCEE
Confidence 999999988876 5789999999999987 788766668889999999999988751 122346778888888
Q ss_pred EEeecCC
Q 005634 306 EIQVRDA 312 (686)
Q Consensus 306 ~l~~~~~ 312 (686)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 8887753
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-14 Score=137.06 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=127.9
Q ss_pred cCCCCCEEEEccCCCCCCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCC
Q 005634 122 TIQKDPIAISLPRRDIQELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLI 198 (686)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~ 198 (686)
....++++|++++|.+..++... .+++|++|++++|. ...++...|..+++|++|++++|.++.+|.. +++++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 34668999999999998887643 89999999999998 4577877789999999999999999988765 68999
Q ss_pred CCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEe
Q 005634 199 NLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYM 275 (686)
Q Consensus 199 ~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 275 (686)
+|++|++++|.++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++|+.|++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~ 172 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSE 172 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHH
Confidence 99999999999988 4 5589999999999999999988876 78999999999999862 356678888888
Q ss_pred cCCccc
Q 005634 276 GDSFSQ 281 (686)
Q Consensus 276 ~~~~~~ 281 (686)
+.+.+.
T Consensus 173 ~~n~~~ 178 (208)
T 2o6s_A 173 WINKHS 178 (208)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 887765
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2.3e-14 Score=130.38 Aligned_cols=138 Identities=25% Similarity=0.290 Sum_probs=97.8
Q ss_pred CCCCccEEEecCccCC--CCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCC-cchhhcCCCCCCEEe
Q 005634 173 GTEELKVLSLNRIHFS--SLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQ-LPLEIGQLTRLQLLD 249 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~--~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~ 249 (686)
..++|++|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.++. +|..++++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3466777888777776 6777777777888888888777666667777888888888887776 666667778888888
Q ss_pred CcCCcCccccCh-hhhcCCCCCcEEEecCCccccccccCCCcc-chhhhCCCCCccEEEEeecCCCcCCC
Q 005634 250 LSDCRSLVVIAP-NVISKFSRLKELYMGDSFSQWDKVKGGRNA-SLAELKGLSKLTTLEIQVRDAQILPQ 317 (686)
Q Consensus 250 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 317 (686)
+++|. ++.+|. ..++++++|++|++++|.+. ..+. ....+..+++|+.|+++.|....+|.
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT------NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG------TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc------chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88776 676652 23777788888888877664 1111 11356777788888888777666654
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=1.6e-14 Score=148.94 Aligned_cols=162 Identities=21% Similarity=0.298 Sum_probs=138.1
Q ss_pred chhhhhcccCCCCCEEEEccCCCCCCCCCcC---CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC
Q 005634 114 DVKKKMEETIQKDPIAISLPRRDIQELPKRL---QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL 190 (686)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 190 (686)
.+..+|. .....++.|++++|.+..++... .+++|++|++++|. ...++...|.++++|++|++++|.++.+
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc----CCccChhhccCCCCCCEEECCCCcCCcC
Confidence 3444554 34667999999999998887643 78999999999998 4567766679999999999999999987
Q ss_pred ch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchhh----cCCCCCCEEeCcCCcCccccChhh
Q 005634 191 PS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLEI----GQLTRLQLLDLSDCRSLVVIAPNV 263 (686)
Q Consensus 191 p~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~ 263 (686)
|. .+.++++|++|+|++|.++. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++|. ++.+|...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHH
Confidence 65 58899999999999999887 578999999999999999999999876 679999999999998 89999776
Q ss_pred hcCCCC--CcEEEecCCccc
Q 005634 264 ISKFSR--LKELYMGDSFSQ 281 (686)
Q Consensus 264 l~~l~~--L~~L~l~~~~~~ 281 (686)
+..++. |+.|++.+|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 888887 488999998764
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=4.7e-14 Score=135.24 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=123.5
Q ss_pred cceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEE
Q 005634 149 LQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEIL 225 (686)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L 225 (686)
-++++++++. ...+|..+ ..+|++|++++|.++.+ |..+.++++|++|++++|.++. + ..+..+++|++|
T Consensus 21 ~~~v~c~~~~----l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKR----HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSC----CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCCC----cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567887776 56777754 48899999999999876 6678999999999999999988 4 567899999999
Q ss_pred EccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 226 SLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 226 ~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
++++|.++.+|.. +..+++|++|++++|. ++.+|.. ++++++|++|++++|.+. . .....+..+++|+.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~------~--~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK------S--IPHGAFDRLSSLTH 163 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC------C--CCTTTTTTCTTCCE
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC------c--cCHHHHhCCCCCCE
Confidence 9999999988766 6889999999999998 8899987 899999999999999875 1 11245778889999
Q ss_pred EEEeecCCC
Q 005634 305 LEIQVRDAQ 313 (686)
Q Consensus 305 L~l~~~~~~ 313 (686)
|++++|...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999887644
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=6.6e-14 Score=133.24 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=121.8
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc--hhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP--SSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEIL 225 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L 225 (686)
++++++++. ...+|..+ ...+++|++++|.++.++ ..++++++|++|++++|.++. + ..++++++|++|
T Consensus 14 ~~l~~s~n~----l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQK----LNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSC----CSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCC----cccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 588999887 45677654 345789999999998774 348899999999999999988 4 589999999999
Q ss_pred EccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccE
Q 005634 226 SLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTT 304 (686)
Q Consensus 226 ~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 304 (686)
++++|.++.+|.. ++.+++|++|++++|. +..+++..++++++|++|++++|.+. ...+..+..+++|+.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT--------TVAPGAFDTLHSLST 157 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC--------CBCTTTTTTCTTCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC--------EECHHHhcCCCCCCE
Confidence 9999999987665 8899999999999998 78876555899999999999999876 122456788899999
Q ss_pred EEEeecCC
Q 005634 305 LEIQVRDA 312 (686)
Q Consensus 305 L~l~~~~~ 312 (686)
|++++|..
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99988754
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.8e-14 Score=148.74 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCccEEEecCccCCCCc-hh----hhcC-CCCcEEEccCCCCCC-c-cc----ccC-CCCCCEEEccCCCCC-----Ccc
Q 005634 175 EELKVLSLNRIHFSSLP-SS----LGRL-INLQTLCLDGCGLKD-I-AI----VGQ-LKKLEILSLRDSKIK-----QLP 236 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp-~~----l~~l-~~Lr~L~L~~~~l~~-~-~~----i~~-L~~L~~L~l~~~~i~-----~lp 236 (686)
++|++|++++|.++..+ .. +..+ ++|++|++++|.++. + .. +.. ..+|++|++++|.++ .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 45555555555544221 11 2223 455555555555443 1 11 222 135555555555444 233
Q ss_pred hhhcCCC-CCCEEeCcCCc
Q 005634 237 LEIGQLT-RLQLLDLSDCR 254 (686)
Q Consensus 237 ~~i~~L~-~L~~L~l~~~~ 254 (686)
..+..+. +|++|++++|.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC
T ss_pred HHHhcCCccccEeeecCCC
Confidence 3333333 55555555544
No 115
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.52 E-value=1.3e-15 Score=165.67 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=74.8
Q ss_pred cccchhhhcccccCCCchhHHHHh-----------hhcccCCCCccCHHHHHHHhhhc--ccccccCCHHHHHHHHHHHH
Q 005634 3 ANVYTSIKLSYDFLESEEAKSLFC-----------LCGLYSEGHAIQVYDLLRYGVGW--GLFENVYTLEEARSRVHRLI 69 (686)
Q Consensus 3 ~~i~~~L~lSY~~Lp~~~lk~cfl-----------y~s~fp~~~~i~~~~Li~~Wiae--gfi~~~~~~e~~~~~~~~~~ 69 (686)
++|+++|++||++||.+ +|+||+ |||+||+|+.|+ |++|+|+ ||+.+.......++.++ +|
T Consensus 361 ~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp STTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 57899999999999999 999999 999999999998 8999999 99975321111233333 79
Q ss_pred HHHHHcccccccC--CCCcEEechhHHHHHHHHHhcc
Q 005634 70 DNLKSSCLLLDDD--AKDEVKMCDVIHVVAVSIAAEK 104 (686)
Q Consensus 70 ~~L~~~~l~~~~~--~~~~~~mhdl~~dla~~i~~~~ 104 (686)
++|+++||++... ...+|+|||+|||+|++++.++
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 9999999999653 3457999999999999888663
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.2e-14 Score=161.02 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=102.5
Q ss_pred CCCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcE
Q 005634 124 QKDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQT 202 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~ 202 (686)
...++++++.++.+...+... ....|+.+.+...........++...+..+..|++|+|++|.+..+|..+.++++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 456889999888886655433 3344444433332211011225566678999999999999999999999999999999
Q ss_pred EEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 203 LCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 203 L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
|+|++|.++. |..|++|++|++|+|++|.++.+|..+++|++|++|+|++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999988 888999999999999999999999999999999999999997 8999998 999999999999999876
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=6.6e-14 Score=127.29 Aligned_cols=131 Identities=22% Similarity=0.202 Sum_probs=75.2
Q ss_pred CCCCEEEEccCCCCC--CCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC-CchhhhcCCC
Q 005634 124 QKDPIAISLPRRDIQ--ELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-LPSSLGRLIN 199 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~ 199 (686)
..++++|++++|.+. .+|..+ .+++|++|++++|.+. .+ ..+..+++|++|++++|.+.. +|..+.++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 455667777776665 555543 5666666666666521 22 223556666666666666654 5555555666
Q ss_pred CcEEEccCCCCCC-c--ccccCCCCCCEEEccCCCCCCcch----hhcCCCCCCEEeCcCCcCccccCh
Q 005634 200 LQTLCLDGCGLKD-I--AIVGQLKKLEILSLRDSKIKQLPL----EIGQLTRLQLLDLSDCRSLVVIAP 261 (686)
Q Consensus 200 Lr~L~L~~~~l~~-~--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~ 261 (686)
|++|++++|.++. + ..++.+++|++|++++|.++.+|. .+..+++|++|++++|. ..++|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 6666666666555 3 455566666666666665555554 45556666666666554 444443
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2.2e-13 Score=147.21 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=132.5
Q ss_pred CCCCEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 124 QKDPIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
..+++.|++++|.+..+| ..+++|++|++++|. ...+|. + .+ +|++|++++|.++.+|. .+++|++|
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~----l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNR----LSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC----CSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCC----CCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEE
Confidence 478999999999999888 458999999999998 334776 3 44 89999999999999987 78999999
Q ss_pred EccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCC-------cEEEe
Q 005634 204 CLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRL-------KELYM 275 (686)
Q Consensus 204 ~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L-------~~L~l 275 (686)
++++|.++. |. .+++|++|++++|.++.+|. ++ ++|++|++++|. ++.+|. +.. +| ++|++
T Consensus 146 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 146 NADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEEC
T ss_pred eCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEec
Confidence 999999988 55 67899999999999999998 76 899999999997 888887 444 67 99999
Q ss_pred cCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 276 GDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
++|.+. ..+..+..+++|+.|++++|.+.
T Consensus 215 s~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 215 RENRIT---------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CSSCCC---------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCcce---------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 999875 34556777999999999999864
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=5.2e-14 Score=125.15 Aligned_cols=100 Identities=28% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcc--hhhcCCCCCCEE
Q 005634 173 GTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLP--LEIGQLTRLQLL 248 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L 248 (686)
.+++|++|++++|.++.+ ..++++++|++|++++|.++. |..++.+++|++|++++|.++.+| ..++.+++|++|
T Consensus 40 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp TCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred hcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 344444444444444333 333444444444444444333 222333444444444444444332 334444444444
Q ss_pred eCcCCcCccccCh---hhhcCCCCCcEEE
Q 005634 249 DLSDCRSLVVIAP---NVISKFSRLKELY 274 (686)
Q Consensus 249 ~l~~~~~l~~lp~---~~l~~l~~L~~L~ 274 (686)
++++|. ++.+|. ..++.+++|++|+
T Consensus 119 ~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 119 DLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp ECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred eCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 444443 333333 2234444444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=4.2e-16 Score=169.47 Aligned_cols=191 Identities=19% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCCEEEEccCCCCCCCCCcC-CCCCcceEEcccCCCc----------ccccccchhHhcCCCCccEEE-ecCccCCCCch
Q 005634 125 KDPIAISLPRRDIQELPKRL-QCPHLQLFLLITKGIA----------PVSMQISDLFFEGTEELKVLS-LNRIHFSSLPS 192 (686)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~ 192 (686)
+.+++|++++|.+..+|..+ .+++|+.|++.+|..- ...+ .++..++.+++|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~-~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc-CCHHHHHHHHhcccCcchhhcccchhhh
Confidence 34555666666666666555 5666666666443200 0111 2222335556666665 44443322221
Q ss_pred ------hhhc--CCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhh
Q 005634 193 ------SLGR--LINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVI 264 (686)
Q Consensus 193 ------~l~~--l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l 264 (686)
.+.. ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++|. ++.+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1111 1258888898888888333888889999999988888888888889999999998887 77788 4 8
Q ss_pred cCCCCCcEEEecCCccccccccCCCccc-hhhhCCCCCccEEEEeecCCCcCCCcc-----cccCccEE
Q 005634 265 SKFSRLKELYMGDSFSQWDKVKGGRNAS-LAELKGLSKLTTLEIQVRDAQILPQDL-----VFVELQRY 327 (686)
Q Consensus 265 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L 327 (686)
+++++|++|++++|.+. ... +..++.+++|+.|++++|.+...|... .+++|+.|
T Consensus 505 ~~l~~L~~L~Ls~N~l~--------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQ--------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TTCSSCCEEECCSSCCC--------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcEEECCCCCCC--------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 88899999999888765 111 567788888889998888877766543 24556555
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=6.6e-14 Score=144.52 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=75.4
Q ss_pred EEccCCCCC-CCCCcCCC-CCcceEEcccCCCcccccccch----hHhcCCC-CccEEEecCccCCCC-chhhhcC----
Q 005634 130 ISLPRRDIQ-ELPKRLQC-PHLQLFLLITKGIAPVSMQISD----LFFEGTE-ELKVLSLNRIHFSSL-PSSLGRL---- 197 (686)
Q Consensus 130 l~l~~~~~~-~l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~l~~l---- 197 (686)
..++.+.+. .+|..... ++|++|++++|. ....+. ..+.+++ +|++|++++|.+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 345555553 22333333 336666666665 223332 3345555 666666666666532 3344443
Q ss_pred -CCCcEEEccCCCCCC--ccc----ccCC-CCCCEEEccCCCCCCcch-h----hcC-CCCCCEEeCcCCcCccc-----
Q 005634 198 -INLQTLCLDGCGLKD--IAI----VGQL-KKLEILSLRDSKIKQLPL-E----IGQ-LTRLQLLDLSDCRSLVV----- 258 (686)
Q Consensus 198 -~~Lr~L~L~~~~l~~--~~~----i~~L-~~L~~L~l~~~~i~~lp~-~----i~~-L~~L~~L~l~~~~~l~~----- 258 (686)
++|++|++++|.+++ +.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++|. ++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 157 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE 157 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence 666666666666554 222 3333 566666666666654332 1 223 2466666666665 442
Q ss_pred cChhhhcCCC-CCcEEEecCCccc
Q 005634 259 IAPNVISKFS-RLKELYMGDSFSQ 281 (686)
Q Consensus 259 lp~~~l~~l~-~L~~L~l~~~~~~ 281 (686)
++.. +..++ +|++|++++|.+.
T Consensus 158 l~~~-l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 158 LIQI-LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHH-HHTSCTTCCEEECTTSCGG
T ss_pred HHHH-HhcCCccccEeeecCCCCc
Confidence 2222 34444 6666666666553
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=2.4e-14 Score=149.39 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=145.9
Q ss_pred CCCCCEEEEccCCCCCCC----CCc--------CCCCCcceEEcccCCCccccc-ccchhHhcCCCCccEEEecCccCCC
Q 005634 123 IQKDPIAISLPRRDIQEL----PKR--------LQCPHLQLFLLITKGIAPVSM-QISDLFFEGTEELKVLSLNRIHFSS 189 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l----~~~--------~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~ 189 (686)
..+++++|++++|.+..+ |.. ..+++|++|++++|.+..... .++.. +.++++|++|++++|.+..
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCH
Confidence 366799999999866433 322 268999999999998432111 24444 4789999999999998852
Q ss_pred -----CchhhhcC---------CCCcEEEccCCCCCC---c---ccccCCCCCCEEEccCCCCC------CcchhhcCCC
Q 005634 190 -----LPSSLGRL---------INLQTLCLDGCGLKD---I---AIVGQLKKLEILSLRDSKIK------QLPLEIGQLT 243 (686)
Q Consensus 190 -----lp~~l~~l---------~~Lr~L~L~~~~l~~---~---~~i~~L~~L~~L~l~~~~i~------~lp~~i~~L~ 243 (686)
++..+..+ ++|++|++++|.++. + ..+..+++|++|++++|.++ -.|..+.+++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 44445555 899999999999873 3 46778999999999999988 2343788999
Q ss_pred CCCEEeCcCCcCc-----cccChhhhcCCCCCcEEEecCCccccccccCCCccchhhh--CCCCCccEEEEeecCCCc--
Q 005634 244 RLQLLDLSDCRSL-----VVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAEL--KGLSKLTTLEIQVRDAQI-- 314 (686)
Q Consensus 244 ~L~~L~l~~~~~l-----~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~-- 314 (686)
+|++|++++|. + ..+|.. +.++++|++|++++|.+.... ....+..+ +++++|+.|++++|.+..
T Consensus 217 ~L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~----~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 217 ELKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TCCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHH----HHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred CccEEECcCCC-CCcHHHHHHHHH-HccCCCcCEEECCCCCCchhh----HHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 99999999998 5 567775 889999999999999875110 01123455 448999999999998765
Q ss_pred ---CCCcc--cccCccEEEE
Q 005634 315 ---LPQDL--VFVELQRYRI 329 (686)
Q Consensus 315 ---~~~~~--~l~~L~~L~l 329 (686)
++..+ .+++|+.|++
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCceEEEc
Confidence 55443 2455555544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1e-13 Score=123.22 Aligned_cols=128 Identities=24% Similarity=0.261 Sum_probs=109.0
Q ss_pred CCCCccEEEecCccCC--CCchhhhcCCCCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCC-cchhhcCCCCCCEEe
Q 005634 173 GTEELKVLSLNRIHFS--SLPSSLGRLINLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQ-LPLEIGQLTRLQLLD 249 (686)
Q Consensus 173 ~l~~Lr~L~l~~~~~~--~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~ 249 (686)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..++++++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4578999999999998 7998889999999999999998888889999999999999999997 888888899999999
Q ss_pred CcCCcCccccC--hhhhcCCCCCcEEEecCCccccccccCCCcc-chhhhCCCCCccEEEEe
Q 005634 250 LSDCRSLVVIA--PNVISKFSRLKELYMGDSFSQWDKVKGGRNA-SLAELKGLSKLTTLEIQ 308 (686)
Q Consensus 250 l~~~~~l~~lp--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~ 308 (686)
+++|. ++.+| .. ++.+++|++|++++|.+. ..+. ....++.+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVT------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGG------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHH-HhhCCCCCEEeCcCCccc------chHHHHHHHHHHCCCcccccCC
Confidence 99998 88765 44 899999999999999875 1111 11357778888888764
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.1e-13 Score=124.71 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=94.6
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEc
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSL 227 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l 227 (686)
++++++++. ...+|..+ ..+|++|++++|.++.+|..+.++++|++|++++|.++. +..|..+++|++|++
T Consensus 13 ~~l~~~~~~----l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKG----LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSC----CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC----CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 455555555 33455543 246788888888888888888888888888888888777 366888888888888
Q ss_pred cCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccc
Q 005634 228 RDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 228 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
++|.++.+|. .+..+++|++|++++|. ++.+|.+.+..+++|++|++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8888887765 57888888888888887 77888766778888888888887653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=7.3e-14 Score=127.98 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=70.8
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-ccc-ccCCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAI-VGQLKKL 222 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~-i~~L~~L 222 (686)
.+++|++|++++|.+ ..++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |.. ++.+++|
T Consensus 17 ~~~~L~~L~l~~n~l----~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI----PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCC----CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCC----chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445555555555542 12322 212223566666666665555 345566666666666666555 322 3566666
Q ss_pred CEEEccCCCCCCcch--hhcCCCCCCEEeCcCCcCccccChh---hhcCCCCCcEEEecCCc
Q 005634 223 EILSLRDSKIKQLPL--EIGQLTRLQLLDLSDCRSLVVIAPN---VISKFSRLKELYMGDSF 279 (686)
Q Consensus 223 ~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~l~~L~~L~l~~~~ 279 (686)
++|++++|.++.+|. .++.+++|++|++++|. +..+|.. +++.+++|++|+++++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666666655 55666666666666665 5555543 35566666666665554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=4.3e-13 Score=124.60 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=59.5
Q ss_pred CccEEEecCccCCCCchh--hhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeC
Q 005634 176 ELKVLSLNRIHFSSLPSS--LGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDL 250 (686)
Q Consensus 176 ~Lr~L~l~~~~~~~lp~~--l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 250 (686)
+|++|++++|.+..++.. ++++++|++|++++|.++. |..++.+++|++|++++|.++.++.. ++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555666666655555432 5566666666666666555 35556666666666666666654433 555666666666
Q ss_pred cCCcCccccChhhhcCCCCCcEEEecCCcc
Q 005634 251 SDCRSLVVIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 251 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
++|. ++.+++..++.+++|++|++++|.+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 6655 4444333355666666666666554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=3.2e-13 Score=123.67 Aligned_cols=134 Identities=14% Similarity=0.231 Sum_probs=111.7
Q ss_pred hcCCCCccEEEecCccCCCCchhhhcCC-CCcEEEccCCCCCCcccccCCCCCCEEEccCCCCCCcchhh-cCCCCCCEE
Q 005634 171 FEGTEELKVLSLNRIHFSSLPSSLGRLI-NLQTLCLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPLEI-GQLTRLQLL 248 (686)
Q Consensus 171 ~~~l~~Lr~L~l~~~~~~~lp~~l~~l~-~Lr~L~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L 248 (686)
+.++.+|+.|++++|.++.+|. +..+. +|++|++++|.++....++.+++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3678899999999999998875 55555 99999999999888778999999999999999999998665 899999999
Q ss_pred eCcCCcCccccCh-hhhcCCCCCcEEEecCCccccccccCCCcc-chhhhCCCCCccEEEEeecCC
Q 005634 249 DLSDCRSLVVIAP-NVISKFSRLKELYMGDSFSQWDKVKGGRNA-SLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 249 ~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 312 (686)
++++|. ++.+|. ..++.+++|++|++++|.+. ..+. ....+..+++|+.|+++.+..
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~------~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT------NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG------GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC------CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999998 888886 23889999999999999875 1111 112377888999999887754
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.1e-12 Score=121.98 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=108.1
Q ss_pred cEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cc--cccCCCCCCEEEccCCCCCCc-chhhcCCCCCCEEeCcCC
Q 005634 178 KVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IA--IVGQLKKLEILSLRDSKIKQL-PLEIGQLTRLQLLDLSDC 253 (686)
Q Consensus 178 r~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~--~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 253 (686)
++++++++.++++|..+.. +|++|++++|.++. +. .++.+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987654 99999999999988 43 489999999999999999977 678999999999999999
Q ss_pred cCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCCC
Q 005634 254 RSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQ 313 (686)
Q Consensus 254 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 313 (686)
. ++.++...++++++|++|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS--------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC--------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC--------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 88888776889999999999999876 123456788899999999987643
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=5.3e-13 Score=149.83 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=109.3
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLE 223 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~ 223 (686)
.+++|++|++++|. ...+|..++ ++++|++|+|++|.++.+|..++++++|++|+|++|.++. |..+++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~----l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ----IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSC----CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCC----CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 78999999999998 447888875 8999999999999999999999999999999999999988 89999999999
Q ss_pred EEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCC-CcEEEecCCcc
Q 005634 224 ILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSR-LKELYMGDSFS 280 (686)
Q Consensus 224 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~-L~~L~l~~~~~ 280 (686)
+|+|++|.++.+|.++++|++|++|+|++|. +...++..++.+.. +..|++.+|.+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcc
Confidence 9999999999999999999999999999998 66544443443321 11244555544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=118.20 Aligned_cols=124 Identities=23% Similarity=0.292 Sum_probs=105.9
Q ss_pred cEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcC
Q 005634 178 KVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRS 255 (686)
Q Consensus 178 r~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~ 255 (686)
++++++++.++.+|..+. .+|++|++++|.++. |..+.++++|++|++++|.|+.++. .+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999997654 689999999999988 7899999999999999999998875 58999999999999998
Q ss_pred ccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 256 LVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 256 l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
++.+++..++++++|++|++++|.+.. .....+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISV--------VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCe--------eChhhhhcCccccEEEeCCCCe
Confidence 888887768999999999999998761 1123467788899999987753
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=3.8e-12 Score=138.37 Aligned_cols=123 Identities=21% Similarity=0.248 Sum_probs=105.9
Q ss_pred CccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeCcCCc
Q 005634 176 ELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDLSDCR 254 (686)
Q Consensus 176 ~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~ 254 (686)
.|++|++++|.++.+|. ++++++|++|++++|.++. |..++.+++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58999999999999997 9999999999999999999 899999999999999999999998 89999999999999998
Q ss_pred Ccccc--ChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEE
Q 005634 255 SLVVI--APNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEI 307 (686)
Q Consensus 255 ~l~~l--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 307 (686)
++.+ |.. ++++++|++|++++|.+... .+....-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQE-----EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGS-----SSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCC-----ccHHHHHHHHCcccCccCC
Confidence 8888 665 99999999999999987621 1122223445778888753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1.1e-11 Score=113.40 Aligned_cols=105 Identities=24% Similarity=0.419 Sum_probs=58.8
Q ss_pred CCccEEEecCccCCCCchh-hhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeC
Q 005634 175 EELKVLSLNRIHFSSLPSS-LGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDL 250 (686)
Q Consensus 175 ~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 250 (686)
++|++|++++|.++.+|.. ++++++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. ++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555554432 3555556666666555555 2 3345566666666666666655543 455666666666
Q ss_pred cCCcCccccChhhhcCCCCCcEEEecCCcc
Q 005634 251 SDCRSLVVIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 251 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
++|. ++.+|...+..+++|++|++++|.+
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 6654 5555555445566666666666554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=8.9e-12 Score=114.13 Aligned_cols=124 Identities=22% Similarity=0.298 Sum_probs=107.6
Q ss_pred CEEEEccCCCCCCCCCcCCCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchh-hhcCCCCcEEEc
Q 005634 127 PIAISLPRRDIQELPKRLQCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSS-LGRLINLQTLCL 205 (686)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~Lr~L~L 205 (686)
.+.++++++.+..+|... .++|++|++++|. ...++...|+++++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCc----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 357888888888888544 4799999999998 4467777778999999999999999988765 689999999999
Q ss_pred cCCCCCC-c-ccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcC
Q 005634 206 DGCGLKD-I-AIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRS 255 (686)
Q Consensus 206 ~~~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~ 255 (686)
++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999988 4 5578999999999999999999887 47899999999999983
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=3.6e-14 Score=132.78 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=67.5
Q ss_pred cCCCCccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC-cccccCCCCCCEEEccCCCCCCcchhhcCCCCCCEEeC
Q 005634 172 EGTEELKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD-IAIVGQLKKLEILSLRDSKIKQLPLEIGQLTRLQLLDL 250 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 250 (686)
.++++|++|++++|.++.+| .+.++++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 56666666666666666666 56666666666666666665 555555666666666666666665 4666666666666
Q ss_pred cCCcCccccCh-hhhcCCCCCcEEEecCCccc
Q 005634 251 SDCRSLVVIAP-NVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 251 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~ 281 (686)
++|. +..++. ..++++++|++|++++|.+.
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6665 555443 22566666666666666543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.1e-13 Score=127.53 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=115.8
Q ss_pred CEEEEccCC--CCCCCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCchhhhcCCCCcEE
Q 005634 127 PIAISLPRR--DIQELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPSSLGRLINLQTL 203 (686)
Q Consensus 127 l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~Lr~L 203 (686)
++...+.+. .+..+|..+ .+++|++|++++|. ...+| . +.++++|++|++++|.++.+|..+..+++|++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~----l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE----ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC----Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 455555543 445555444 79999999999998 34477 3 588999999999999999999988889999999
Q ss_pred EccCCCCCCcccccCCCCCCEEEccCCCCCCcch--hhcCCCCCCEEeCcCCcCccccC----------hhhhcCCCCCc
Q 005634 204 CLDGCGLKDIAIVGQLKKLEILSLRDSKIKQLPL--EIGQLTRLQLLDLSDCRSLVVIA----------PNVISKFSRLK 271 (686)
Q Consensus 204 ~L~~~~l~~~~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp----------~~~l~~l~~L~ 271 (686)
++++|.++.++.++.+++|++|++++|.++.+|. .+..+++|++|++++|. +...+ ..++..+++|+
T Consensus 99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence 9999999994478999999999999999998875 78999999999999998 54432 22367889999
Q ss_pred EEE
Q 005634 272 ELY 274 (686)
Q Consensus 272 ~L~ 274 (686)
+|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 887
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.5e-11 Score=110.43 Aligned_cols=101 Identities=22% Similarity=0.390 Sum_probs=72.4
Q ss_pred cEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCc
Q 005634 178 KVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCR 254 (686)
Q Consensus 178 r~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 254 (686)
+.++++++.+..+|..+. ++|++|++++|.++. |..++++++|++|++++|.++.+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 677777777777766 35677777777777777777777665 4677777777777776
Q ss_pred CccccChhhhcCCCCCcEEEecCCccc
Q 005634 255 SLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 255 ~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
++.+|.+.++++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 67777665677777777777777654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=3.2e-11 Score=109.34 Aligned_cols=102 Identities=20% Similarity=0.312 Sum_probs=76.8
Q ss_pred ccEEEecCccCCCCchhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCC
Q 005634 177 LKVLSLNRIHFSSLPSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDC 253 (686)
Q Consensus 177 Lr~L~l~~~~~~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 253 (686)
.+.++++++.++.+|..+. ++|++|++++|.++. +..++++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776553 677888888888776 46677888888888888888877765 477888888888887
Q ss_pred cCccccChhhhcCCCCCcEEEecCCccc
Q 005634 254 RSLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 254 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
. ++.+|.+.++++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6 77777765777888888888877654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.2e-10 Score=104.20 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=67.9
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILS 226 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~ 226 (686)
+.++++++. ...+|..+ .++|++|++++|.++.+ |..++++++|++|+|++|.++. | ..++++++|++|+
T Consensus 15 ~~l~~~~n~----l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIR----LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSC----CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCC----CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 455555554 34455533 25667777777777665 4456777777777777777766 4 3356777777777
Q ss_pred ccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccCh
Q 005634 227 LRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAP 261 (686)
Q Consensus 227 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 261 (686)
+++|.++.+|.. +.++++|++|++++|. +...+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 777777777665 6777777777777776 554443
No 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.12 E-value=2.7e-11 Score=134.48 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=73.5
Q ss_pred cccchhhhcccccCCCchh-HHHHhhhcccCCCCccCHHHHHHHhhhcccccccCCHHHHHHHHHHHHHHHHHccccccc
Q 005634 3 ANVYTSIKLSYDFLESEEA-KSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDD 81 (686)
Q Consensus 3 ~~i~~~L~lSY~~Lp~~~l-k~cfly~s~fp~~~~i~~~~Li~~Wiaegfi~~~~~~e~~~~~~~~~~~~L~~~~l~~~~ 81 (686)
++|..+|++||++||++ + |+||+|||+||+++.|.++.++.+|+++|. ++ +.+++++|+++||++..
T Consensus 353 ~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHHHHHHTSSSSSBC
T ss_pred hHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHHHHHHhhCCEEEe
Confidence 46889999999999999 8 999999999999999999999999999981 22 34679999999999986
Q ss_pred CCCCcEEechhHHHHHH
Q 005634 82 DAKDEVKMCDVIHVVAV 98 (686)
Q Consensus 82 ~~~~~~~mhdl~~dla~ 98 (686)
+...+|+|||++++++.
T Consensus 421 ~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH
T ss_pred CCCCEEEehHHHHHHhc
Confidence 55678999999999763
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=2.7e-10 Score=115.69 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=113.7
Q ss_pred CCCCEEEEccCCCCC--------------------CCCCcC--C--------CCCcceEEcccCCCcccccccchhHhcC
Q 005634 124 QKDPIAISLPRRDIQ--------------------ELPKRL--Q--------CPHLQLFLLITKGIAPVSMQISDLFFEG 173 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (686)
..+++.|++++|.+. .+|... + |++|+.+.+.. . ...++...|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~----i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K----IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T----CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c----ccchhHHHhhc
Confidence 556788888877765 233322 4 67777777776 3 34566666777
Q ss_pred CCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCC-------CCCcccc-----------------------------
Q 005634 174 TEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCG-------LKDIAIV----------------------------- 216 (686)
Q Consensus 174 l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~-------l~~~~~i----------------------------- 216 (686)
+.+|+.|+++++.+..++. .|..+.++.++.+.... +.. ..+
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 7777777777776655433 35555555555544311 000 000
Q ss_pred ---------------------cCCCCCCEEEccCCCCCCcchh-hcCCCCCCEEeCcCCcCccccChhhhcCCCCCc-EE
Q 005634 217 ---------------------GQLKKLEILSLRDSKIKQLPLE-IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLK-EL 273 (686)
Q Consensus 217 ---------------------~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~-~L 273 (686)
..+.+|+.|++++|.++.+|.. +..+.+|+.|++.++ ++.++.+++.++++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 0256777777777777777654 677777777777764 6777777677777777 77
Q ss_pred EecCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEE
Q 005634 274 YMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRY 327 (686)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L 327 (686)
.+.. .+. .-....+.++++|+.+++..+.+..++... .+.+|+.+
T Consensus 280 ~l~~-~l~--------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 280 ELPA-SVT--------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECT-TCC--------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEcc-cce--------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 7765 222 111245667777777777666666666554 55555554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=8.7e-10 Score=99.83 Aligned_cols=98 Identities=24% Similarity=0.283 Sum_probs=64.2
Q ss_pred ceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEE
Q 005634 150 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILS 226 (686)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~ 226 (686)
++++++++. ...+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++. + ..+.++++|++|+
T Consensus 12 ~~l~~s~n~----l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGKS----LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTSC----CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEeCCCC----cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 455555554 33455433 25667777777777665 4456777777777777777666 3 3456777777777
Q ss_pred ccCCCCCCcchh-hcCCCCCCEEeCcCCc
Q 005634 227 LRDSKIKQLPLE-IGQLTRLQLLDLSDCR 254 (686)
Q Consensus 227 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 254 (686)
+++|.++.+|.. +.++++|++|++++|.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777776654 6777777777777766
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.92 E-value=7.1e-10 Score=133.93 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=74.7
Q ss_pred ccchhhhcccccCCCchhHHHHhhhcccCCCCccCHHHHHHHhhhcccccccCCHHHHHHHHHHHHHHHHHcccccccCC
Q 005634 4 NVYTSIKLSYDFLESEEAKSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDDDA 83 (686)
Q Consensus 4 ~i~~~L~lSY~~Lp~~~lk~cfly~s~fp~~~~i~~~~Li~~Wiaegfi~~~~~~e~~~~~~~~~~~~L~~~~l~~~~~~ 83 (686)
.+..+|.+||+.||++ +|+||+|||+||+++.|+++.++.+|.+++ + .+++++++|++++|++....
T Consensus 363 ~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~----~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 363 ALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------E----EVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp HHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHHTTSCEEEES
T ss_pred HHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------H----HHHHHHHHHHhccceEEecC
Confidence 5789999999999999 999999999999999999999999997763 2 23467899999999986533
Q ss_pred C--CcEEechhHHHHHHHHHhc
Q 005634 84 K--DEVKMCDVIHVVAVSIAAE 103 (686)
Q Consensus 84 ~--~~~~mhdl~~dla~~i~~~ 103 (686)
. .+|+|||+||++|+..+.+
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGG
T ss_pred CCceEEEecHHHHHHHHhhhhH
Confidence 2 2599999999999998765
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=7e-10 Score=113.94 Aligned_cols=153 Identities=14% Similarity=0.039 Sum_probs=85.5
Q ss_pred CCCCEEEEccCCCCCCCC-----CcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC-----Cc
Q 005634 124 QKDPIAISLPRRDIQELP-----KRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-----LP 191 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp 191 (686)
...++.+++++|.+.... ..+ ..++|++|++++|.++ ..-...+...+++|+.|++++|.+.. +.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 456778888888764321 111 2357777777777622 11122223344567777777776652 22
Q ss_pred hhh-hcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccCCCCCC-----cchhhcCCCCCCEEeCcCCcCcccc
Q 005634 192 SSL-GRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRDSKIKQ-----LPLEIGQLTRLQLLDLSDCRSLVVI 259 (686)
Q Consensus 192 ~~l-~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~l 259 (686)
..+ ...++|++|+|++|.+++ . ..+..+++|++|++++|.++. ++..+...++|++|++++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 222 235667777777776654 1 233556667777777776652 34455566667777777665 4432
Q ss_pred -----ChhhhcCCCCCcEEEecCCccc
Q 005634 260 -----APNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 260 -----p~~~l~~l~~L~~L~l~~~~~~ 281 (686)
+.. +...++|++|++++|.+.
T Consensus 227 g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 221 344566777777666654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=4.9e-09 Score=107.29 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=64.1
Q ss_pred EEecCc-cCCCCchhhhcCCCCcEEEccC-CCCCC-c-ccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCc
Q 005634 180 LSLNRI-HFSSLPSSLGRLINLQTLCLDG-CGLKD-I-AIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCR 254 (686)
Q Consensus 180 L~l~~~-~~~~lp~~l~~l~~Lr~L~L~~-~~l~~-~-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 254 (686)
++++++ .++.+|. +..+.+|++|+|++ |.++. + ..|+.|.+|++|+|++|.++.+|. .+++|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 466665 6666666 66667777777765 66666 3 556677777777777777765544 45677777777777766
Q ss_pred CccccChhhhcCCCCCcEEEecCCccc
Q 005634 255 SLVVIAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 255 ~l~~lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
++.+|.+.+..+. |+.|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666665344443 777777766553
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7.7e-09 Score=104.85 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=129.1
Q ss_pred CCCCEEEEccCCCC-CCCCCcCC-CCCcceEEcccCCCc-------cccc---------ccchhHhcC--------CCCc
Q 005634 124 QKDPIAISLPRRDI-QELPKRLQ-CPHLQLFLLITKGIA-------PVSM---------QISDLFFEG--------TEEL 177 (686)
Q Consensus 124 ~~~l~~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~-------~~~~---------~~~~~~~~~--------l~~L 177 (686)
..++++|.+.++-- ..+..... +++|++|++++|.+. .... .+|...|.+ +.+|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 34577788776411 11111112 789999999999843 1111 567777888 9999
Q ss_pred cEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCC-------CC--------------
Q 005634 178 KVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSK-------IK-------------- 233 (686)
Q Consensus 178 r~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~-------i~-------------- 233 (686)
+.|++.. .++.+++ .|.+|++|+.+++.++.+.. +..|..+.++.++...... +.
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999998 7877765 58899999999999998766 4677778788777765511 00
Q ss_pred ------Ccchhh----------------------------cCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCc
Q 005634 234 ------QLPLEI----------------------------GQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 234 ------~lp~~i----------------------------~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 279 (686)
.++..+ ..+++|+.|++++|. ++.+|..++.++++|+++++..+
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-
Confidence 111111 126788888888876 88888887888888888888776
Q ss_pred cccccccCCCccchhhhCCCCCcc-EEEEeecCCCcCCCcc--cccCccEEEE
Q 005634 280 SQWDKVKGGRNASLAELKGLSKLT-TLEIQVRDAQILPQDL--VFVELQRYRI 329 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~--~l~~L~~L~l 329 (686)
+. .-....+.++.+|+ .+.+.. .+..++... .+.+|+.+.+
T Consensus 261 i~--------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 261 LK--------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CC--------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred cc--------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 22 11223467778888 888875 555555444 5566666654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=4.1e-10 Score=115.66 Aligned_cols=163 Identities=16% Similarity=0.135 Sum_probs=109.3
Q ss_pred CCCcceEEcccCCCccccc-ccchhHhcCCCCccEEEecCccCCC--CchhhhcCCCCcEEEccCCCCCC--cccc----
Q 005634 146 CPHLQLFLLITKGIAPVSM-QISDLFFEGTEELKVLSLNRIHFSS--LPSSLGRLINLQTLCLDGCGLKD--IAIV---- 216 (686)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l~~Lr~L~L~~~~l~~--~~~i---- 216 (686)
.++|++|++++|.++.... .+...+....++|+.|+|++|.+.. +..-...+.+|++|+|++|.+++ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678899999888432111 1222221234789999999998763 22223345688999999998876 3443
Q ss_pred -cCCCCCCEEEccCCCCCC-----cchhhcCCCCCCEEeCcCCcCcccc-----ChhhhcCCCCCcEEEecCCccccccc
Q 005634 217 -GQLKKLEILSLRDSKIKQ-----LPLEIGQLTRLQLLDLSDCRSLVVI-----APNVISKFSRLKELYMGDSFSQWDKV 285 (686)
Q Consensus 217 -~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~~l~~l~~L~~L~l~~~~~~~~~~ 285 (686)
...++|++|++++|.++. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 346789999999998863 55566788889999999887 5543 333 667788999999988765110
Q ss_pred cCCCccchhhhCCCCCccEEEEeecCCCc
Q 005634 286 KGGRNASLAELKGLSKLTTLEIQVRDAQI 314 (686)
Q Consensus 286 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 314 (686)
.......+...++|++|++++|.++.
T Consensus 228 ---~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ---ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ---HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ---HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 11233446667889999999887654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.4e-08 Score=102.11 Aligned_cols=89 Identities=25% Similarity=0.232 Sum_probs=53.9
Q ss_pred cccchhHhcCCCCccEEEecC-ccCCCCc-hhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcchhh
Q 005634 164 MQISDLFFEGTEELKVLSLNR-IHFSSLP-SSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPLEI 239 (686)
Q Consensus 164 ~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~~i 239 (686)
..+|. +..+.+|+.|+|++ |.++.+| ..|+++++|++|+|++|.++. +..|++|++|++|+|++|.++.+|..+
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 34555 35666666666664 6666554 346666666666666666665 345666666666666666666666554
Q ss_pred cCCCCCCEEeCcCCc
Q 005634 240 GQLTRLQLLDLSDCR 254 (686)
Q Consensus 240 ~~L~~L~~L~l~~~~ 254 (686)
.....|++|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 333336666666655
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=2.7e-06 Score=88.03 Aligned_cols=261 Identities=16% Similarity=0.131 Sum_probs=153.4
Q ss_pred CCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCC
Q 005634 146 CPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKL 222 (686)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L 222 (686)
+..++.+.+... ...++...|.++ +|+.+.+..+ ++.++. +|.+ .+|+.+.+.+ .++. ...|.++.+|
T Consensus 112 ~~~l~~i~ip~~-----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNS-----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTT-----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCc-----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 466666666653 356777777775 6899988766 665544 4555 4688888886 5555 4678889999
Q ss_pred CEEEccCCCCCCcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCc
Q 005634 223 EILSLRDSKIKQLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKL 302 (686)
Q Consensus 223 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 302 (686)
+.+++..+.++.+|...-...+|+.+.+..+ ++.++..++.++++|+.+.+..+-.. -....+.+ .+|
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~---------I~~~aF~~-~~L 250 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST---------IGQEAFRE-SGI 250 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE---------ECTTTTTT-CCC
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC---------cccccccc-CCc
Confidence 9999998888888876555688999998753 78888887888899999988764211 01112333 467
Q ss_pred cEEEEeecCCCcCCCcc--cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEccc
Q 005634 303 TTLEIQVRDAQILPQDL--VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDEL 380 (686)
Q Consensus 303 ~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 380 (686)
+.+.+. +.+..++... .+.+|+.+.+..+... .
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------------------------------~ 285 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------------------------------D 285 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------------------------------C
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc--------------------------------------------C
Confidence 777773 3344443332 3444444443211100 0
Q ss_pred cCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEEE
Q 005634 381 KGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRIIK 460 (686)
Q Consensus 381 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 460 (686)
.....+... .+.++++|+.+.+.+ .++.+... ....+++|+.+.|.+ +++.+.... ...+ +|+.+.
T Consensus 286 ~~~~~I~~~--aF~~c~~L~~l~l~~--~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a---F~~~-~L~~l~ 351 (401)
T 4fdw_A 286 DPEAMIHPY--CLEGCPKLARFEIPE--SIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA---FNNT-GIKEVK 351 (401)
T ss_dssp CTTCEECTT--TTTTCTTCCEECCCT--TCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS---SSSS-CCCEEE
T ss_pred CcccEECHH--HhhCCccCCeEEeCC--ceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh---CCCC-CCCEEE
Confidence 000001000 144666777777663 34444221 233456777777743 355554443 3345 788888
Q ss_pred EecCCCCccccCchhhhhcC-CccEEEEe
Q 005634 461 VRNSQKLKQLFSFSIAKNLL-RLQKVEVA 488 (686)
Q Consensus 461 l~~c~~l~~l~~~~~~~~l~-~L~~L~i~ 488 (686)
+.+. .+..++. ..+..++ +++.|.+-
T Consensus 352 l~~n-~~~~l~~-~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 352 VEGT-TPPQVFE-KVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECCS-SCCBCCC-SSCCCSCTTCCEEEEC
T ss_pred EcCC-CCccccc-ccccCCCCCccEEEeC
Confidence 8774 3444432 2334453 66777664
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.58 E-value=3.5e-08 Score=108.80 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=71.6
Q ss_pred ccchhhhcccccCCCchhHHHHhhhcccCCCCccCHHHHHHHhhhcccccccCCHHHHHHHHHHHHHHHHHcccccccC-
Q 005634 4 NVYTSIKLSYDFLESEEAKSLFCLCGLYSEGHAIQVYDLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDDD- 82 (686)
Q Consensus 4 ~i~~~L~lSY~~Lp~~~lk~cfly~s~fp~~~~i~~~~Li~~Wiaegfi~~~~~~e~~~~~~~~~~~~L~~~~l~~~~~- 82 (686)
.+..++..||+.||++ .|.||+|+|+||+|+.|+.+.++..|.+++ ++ +.+++++|++++|++...
T Consensus 363 ~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 363 ALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp HHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----HHHHHHHHHhCcCeEEecC
Confidence 5778999999999999 999999999999999999999999997642 22 346789999999998542
Q ss_pred -CCCcEEechhHHHHHHHHH
Q 005634 83 -AKDEVKMCDVIHVVAVSIA 101 (686)
Q Consensus 83 -~~~~~~mhdl~~dla~~i~ 101 (686)
...+|+||+++|++++...
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHT
T ss_pred CCccEEEEcHHHHHHHHhhh
Confidence 2346999999999998873
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=2.7e-08 Score=88.49 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCcCEEEEecCCCCccccCchhhhhcCCccEEEEeecccceee
Q 005634 454 SNLRIIKVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMI 496 (686)
Q Consensus 454 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 496 (686)
.+|++|++++|. +++.. ...+.++++|++|++++|..+++.
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHH
Confidence 456777777765 54431 122345666666666666655553
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=2.4e-06 Score=88.49 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=99.2
Q ss_pred CCEEEEccCCCCCCCCCcC--CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcE
Q 005634 126 DPIAISLPRRDIQELPKRL--QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQT 202 (686)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~ 202 (686)
+++.+.+.. .+..+.... +|++|+.+++..+. ...++...|. ...|+.+.+..+ ++.++. .|.++.+|+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~----l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK----ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC----CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc----ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence 466666664 455555433 67788888887765 4456666655 467777777643 444433 4566677777
Q ss_pred EEccCCCCCC--cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcC----ccccChhhhcCCCCCcEEEe
Q 005634 203 LCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRS----LVVIAPNVISKFSRLKELYM 275 (686)
Q Consensus 203 L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~----l~~lp~~~l~~l~~L~~L~l 275 (686)
+.+..+ ++. ...|.+ .+|+.+.+. +.++.++. .+.++++|+.+.+.++.. ...++...+.++++|+.+.+
T Consensus 231 l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 231 IEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 777653 333 233444 556666663 33444432 355666666666655431 11355555666666666665
Q ss_pred cCCccccccccCCCccchhhhCCCCCccEEEEeecCCCcCCCcc--cccCccEEEEEec
Q 005634 276 GDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDAQILPQDL--VFVELQRYRICIG 332 (686)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~ 332 (686)
..+ +. .-....+.++++|+.+.+.. .+..++... .+ +|+.+.+..+
T Consensus 308 ~~~-i~--------~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 308 PES-IR--------ILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTT-CC--------EECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCc-eE--------EEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC
Confidence 532 11 01122345555666666532 244443333 33 5666655443
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=8.1e-08 Score=85.42 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=37.5
Q ss_pred cccEeeccccccchhhcccCCCCCCcCCCcCEEEEecCCCCccccCchhhhh----cCCccEEEEeecccceeee
Q 005634 427 LLESLSLIYLNNLETICDSQLTEDQSFSNLRIIKVRNSQKLKQLFSFSIAKN----LLRLQKVEVASCYKLEMIF 497 (686)
Q Consensus 427 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~----l~~L~~L~i~~c~~l~~~~ 497 (686)
+|+.|++++|. +++..... ...+++|++|++++|..+++..- ..+.. .++|++|+|++|+++++-+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 45555555554 43322221 34578888888888887776421 11222 2357777777777766543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=6.3e-06 Score=85.53 Aligned_cols=122 Identities=14% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
+|.+|+.+.+..+ ...+....|.++.+|+.+++..+ ++.++. .+.++..|+.+.+..+ +.. ...+..+..
T Consensus 69 ~c~~L~~i~lp~~-----i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 69 GCRKVTEIKIPST-----VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TCTTEEEEECCTT-----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred CCCCceEEEeCCC-----ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 5667777776532 34566666677777777777543 333332 3556666665554432 111 223333332
Q ss_pred CCEEEccCCCCCCcc-hhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 222 LEILSLRDSKIKQLP-LEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 222 L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
+...... .+..+. ..+.++.+|+.+.+... +..++.+++.++.+|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 2222111 111111 23455555555555432 3445544455555555555543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=9.4e-06 Score=84.23 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=81.3
Q ss_pred ccccchhHhcCCCCccEEEecCccCCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcch-h
Q 005634 163 SMQISDLFFEGTEELKVLSLNRIHFSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-E 238 (686)
Q Consensus 163 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~ 238 (686)
...+....|.++.+|+.+.+..+ ++.+++ +|.+|.+|+.+++..+ ++. ...+..+.+|+.+.+..+ ++.+.. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44577777899999999999754 666644 5788999999999754 444 356777888887766543 333322 3
Q ss_pred hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEe
Q 005634 239 IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQ 308 (686)
Q Consensus 239 i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 308 (686)
+.....+....... ...+...++.++++|+.+.+..+... -....+..+.+|+.+.+.
T Consensus 136 F~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~---------I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 136 FKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET---------LHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE---------ECTTTTTTCTTCCBCCCC
T ss_pred eecccccccccCcc---ccccchhhhcccCCCcEEecCCccce---------eccccccCCCCceEEEcC
Confidence 44444333333222 44455555788888888887654321 112235556666666554
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=6.8e-07 Score=90.80 Aligned_cols=181 Identities=13% Similarity=0.160 Sum_probs=100.7
Q ss_pred CCCCEEEEccCCCCC--C-------CCCcC-CCCCcceEEcccCCCcc--c----ccccchhHhcCCCCccEEEecCccC
Q 005634 124 QKDPIAISLPRRDIQ--E-------LPKRL-QCPHLQLFLLITKGIAP--V----SMQISDLFFEGTEELKVLSLNRIHF 187 (686)
Q Consensus 124 ~~~l~~l~l~~~~~~--~-------l~~~~-~~~~L~~L~l~~~~~~~--~----~~~~~~~~~~~l~~Lr~L~l~~~~~ 187 (686)
..+++.|.+....+. . +.... ++++|+.|.+....... . ...+ ..++..+++|+.|+++++.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCC
Confidence 345677777655432 1 11112 56788888876543110 0 0112 24456778888888887742
Q ss_pred CCCchhhhcCCCCcEEEccCCCCCC--ccccc--CCCCCCEEEccCC--C------CCCcchhh--cCCCCCCEEeCcCC
Q 005634 188 SSLPSSLGRLINLQTLCLDGCGLKD--IAIVG--QLKKLEILSLRDS--K------IKQLPLEI--GQLTRLQLLDLSDC 253 (686)
Q Consensus 188 ~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~--~L~~L~~L~l~~~--~------i~~lp~~i--~~L~~L~~L~l~~~ 253 (686)
..++. + .+++|+.|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ +.+++|++|++++|
T Consensus 185 l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 34443 3 36788888888777655 34443 6788888887531 1 21222222 34678888888777
Q ss_pred cCccccChhhh---cCCCCCcEEEecCCccccccccCCCccchhhhCCCCCccEEEEeecCC
Q 005634 254 RSLVVIAPNVI---SKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLSKLTTLEIQVRDA 312 (686)
Q Consensus 254 ~~l~~lp~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 312 (686)
......+.. + ..+++|++|+++.|.+.... .......+..+++|+.|+++.|.+
T Consensus 263 ~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G----~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 263 EEQNVVVEM-FLESDILPQLETMDISAGVLTDEG----ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHH----HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCchHHHHH-HHhCccCCCCCEEECCCCCCChHH----HHHHHhhcccCCcceEEECCCCcC
Confidence 622222222 2 24677888888777654100 011223345567788888876653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.7e-06 Score=79.11 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=59.2
Q ss_pred hcCCCCccEEEecCc-cCC-----CCchhhhcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccCCCCCC----
Q 005634 171 FEGTEELKVLSLNRI-HFS-----SLPSSLGRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRDSKIKQ---- 234 (686)
Q Consensus 171 ~~~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~i~~---- 234 (686)
+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345555666666665 543 133444555566666666666554 1 223344566666666666652
Q ss_pred -cchhhcCCCCCCEEeC--cCCcCccc-----cChhhhcCCCCCcEEEecCCcc
Q 005634 235 -LPLEIGQLTRLQLLDL--SDCRSLVV-----IAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 235 -lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
+...+...++|++|++ ++|. ++. +... +...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 3445555666666666 5554 333 2222 44556677777776654
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.3e-06 Score=79.91 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=65.2
Q ss_pred CCCCcceEEcccC-CCcccccccchhHhcCCCCccEEEecCccCCC-----CchhhhcCCCCcEEEccCCCCCC------
Q 005634 145 QCPHLQLFLLITK-GIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-----LPSSLGRLINLQTLCLDGCGLKD------ 212 (686)
Q Consensus 145 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~Lr~L~L~~~~l~~------ 212 (686)
..+.|++|++++| .+...........+...+.|++|+|++|.+.. +...+...+.|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4667777777776 53211111112223556677777777776652 44455556677777777777665
Q ss_pred cccccCCCCCCEEEc--cCCCCCC-----cchhhcCCCCCCEEeCcCCc
Q 005634 213 IAIVGQLKKLEILSL--RDSKIKQ-----LPLEIGQLTRLQLLDLSDCR 254 (686)
Q Consensus 213 ~~~i~~L~~L~~L~l--~~~~i~~-----lp~~i~~L~~L~~L~l~~~~ 254 (686)
...+...+.|++|++ ++|.|.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 144555667777777 6666662 34445556677777777665
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=3.9e-06 Score=85.22 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=102.8
Q ss_pred CCCCCEEEEccCCCCC----------CCCCcC-CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCC-C
Q 005634 123 IQKDPIAISLPRRDIQ----------ELPKRL-QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSS-L 190 (686)
Q Consensus 123 ~~~~l~~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-l 190 (686)
..++++.|.+.....+ .+...+ .+|+|+.|.+.++. . ..++. + .+.+|+.|++..+.+.. .
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~---~-l~l~~-~--~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---N-LSIGK-K--PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB---T-CBCCS-C--BCTTCSEEEEECSBCCHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC---C-ceecc-c--cCCCCcEEEEecCCCChHH
Confidence 3578999998765332 122222 67999999999874 1 23444 2 37899999999888752 2
Q ss_pred chhhh--cCCCCcEEEccCC--C------CCCc-ccc--cCCCCCCEEEccCCCCCC-cchhh---cCCCCCCEEeCcCC
Q 005634 191 PSSLG--RLINLQTLCLDGC--G------LKDI-AIV--GQLKKLEILSLRDSKIKQ-LPLEI---GQLTRLQLLDLSDC 253 (686)
Q Consensus 191 p~~l~--~l~~Lr~L~L~~~--~------l~~~-~~i--~~L~~L~~L~l~~~~i~~-lp~~i---~~L~~L~~L~l~~~ 253 (686)
...+. .+++|++|+|+.+ . +... ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 23343 7999999998632 1 1111 122 357999999999998862 22333 35789999999988
Q ss_pred cCccc-----cChhhhcCCCCCcEEEecCCccc
Q 005634 254 RSLVV-----IAPNVISKFSRLKELYMGDSFSQ 281 (686)
Q Consensus 254 ~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~ 281 (686)
. ++. ++.. +..+++|+.|++++|.+.
T Consensus 290 ~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 V-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp C-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred C-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 7 655 3433 567899999999999765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=1.3e-05 Score=76.98 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=43.9
Q ss_pred hcCCCCcEEEccCCCCCCc----ccccCCCCCCEEEccCCCCCCcchhhcCCC--CCCEEeCcCCcCccccC------hh
Q 005634 195 GRLINLQTLCLDGCGLKDI----AIVGQLKKLEILSLRDSKIKQLPLEIGQLT--RLQLLDLSDCRSLVVIA------PN 262 (686)
Q Consensus 195 ~~l~~Lr~L~L~~~~l~~~----~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp------~~ 262 (686)
.++++|+.|+|++|.++.+ ..++.+++|++|+|++|.|+.+ ..+..+. +|++|++++|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3456666666666665542 2334566666666666666655 2344444 66666666666333333 12
Q ss_pred hhcCCCCCcEEE
Q 005634 263 VISKFSRLKELY 274 (686)
Q Consensus 263 ~l~~l~~L~~L~ 274 (686)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777765
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=4.4e-06 Score=80.29 Aligned_cols=78 Identities=29% Similarity=0.309 Sum_probs=44.2
Q ss_pred cCCCCccEEEecCccCCCCc---hhhhcCCCCcEEEccCCCCCCcccccCCC--CCCEEEccCCCCC-Ccc-------hh
Q 005634 172 EGTEELKVLSLNRIHFSSLP---SSLGRLINLQTLCLDGCGLKDIAIVGQLK--KLEILSLRDSKIK-QLP-------LE 238 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~~lp---~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~--~L~~L~l~~~~i~-~lp-------~~ 238 (686)
.++.+|+.|+|++|.++.++ ..+..+++|++|+|++|.+++...+..+. +|++|++++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45566666666666665432 44556666666666666666543333333 6666666666654 232 12
Q ss_pred hcCCCCCCEEe
Q 005634 239 IGQLTRLQLLD 249 (686)
Q Consensus 239 i~~L~~L~~L~ 249 (686)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666665
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.0028 Score=65.40 Aligned_cols=314 Identities=11% Similarity=0.145 Sum_probs=145.8
Q ss_pred CcceEEcccCCCcccccccchhHhcCCCCccEEEecCcc---CCCCch-hhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 148 HLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIH---FSSLPS-SLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
.|+++.+..+ ...+....|.++.+|+.+.+..+. ++.+.. +|..+.+|+.+.+..+ ++. ...+..+.+
T Consensus 65 ~L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTT
T ss_pred cCEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcc
Confidence 4666666543 345666666777777777776553 333332 3556666666555433 233 245566667
Q ss_pred CCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCccccccccCCCccchhhhCCCC
Q 005634 222 LEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFSQWDKVKGGRNASLAELKGLS 300 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 300 (686)
|+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..+....+ .-.+|+.+.+...... ........+.
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~~~~l~~i~ip~~~~~---------i~~~af~~c~ 205 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-TGTALTQIHIPAKVTR---------IGTNAFSECF 205 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCCCSEEEECTTCCE---------ECTTTTTTCT
T ss_pred cccccccce-eeeecccceecccccccccccce--eeEeccccc-cccceeEEEECCcccc---------cccchhhhcc
Confidence 777776532 333322 3556666777766543 555555533 3355666666443211 1112334455
Q ss_pred CccEEEEeecCCCcCCCcc-cccCccEEEEEecCcCCccccCCCCccEEEEcCccCccchhhhhhHhhhhccccEEEEcc
Q 005634 301 KLTTLEIQVRDAQILPQDL-VFVELQRYRICIGEALGVQRVDSETSRLVELCGLANVSSLLENYGMKMLLKKTEDINLDE 379 (686)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 379 (686)
++............+.... ........ .+..+. ....+..+.+-
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-------------~~~~~~~~~ip- 250 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDY---------------------ALIRYP-------------SQREDPAFKIP- 250 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCE---------------------EEEECC-------------TTCCCSEEECC-
T ss_pred ccceecccccccccccceeecccccccc---------------------cccccc-------------cccccceEEcC-
Confidence 5555444332222111111 00000000 000000 00111111110
Q ss_pred ccCcccccccCCCCCCCCCCceEEeecCCCceEeeccccccccccCCcccEeeccccccchhhcccCCCCCCcCCCcCEE
Q 005634 380 LKGVQNVVHELDDGEGFPRLKHLQVKLCSEILHIVGSVGRVRRKVFPLLESLSLIYLNNLETICDSQLTEDQSFSNLRII 459 (686)
Q Consensus 380 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 459 (686)
..++.+... ....+.+|+.+.+.+. +..+.. . ....+++|+.+.+. ..++.++... ...+.+|+.+
T Consensus 251 -~~v~~i~~~--aF~~c~~L~~i~lp~~--~~~I~~-~---aF~~c~~L~~i~l~--~~i~~I~~~a---F~~c~~L~~i 316 (394)
T 4gt6_A 251 -NGVARIETH--AFDSCAYLASVKMPDS--VVSIGT-G---AFMNCPALQDIEFS--SRITELPESV---FAGCISLKSI 316 (394)
T ss_dssp -TTEEEECTT--TTTTCSSCCEEECCTT--CCEECT-T---TTTTCTTCCEEECC--TTCCEECTTT---TTTCTTCCEE
T ss_pred -CcceEcccc--eeeecccccEEecccc--cceecC-c---ccccccccccccCC--CcccccCcee---ecCCCCcCEE
Confidence 011111000 1345666777666432 222211 1 23345667777764 2344444332 3456778888
Q ss_pred EEecCCCCccccCchhhhhcCCccEEEEeecccceeeeccccccccccccccCCcceeecccccccccccccCCCccccC
Q 005634 460 KVRNSQKLKQLFSFSIAKNLLRLQKVEVASCYKLEMIFGKNKNVRFSLQVSLPSLEELNLRELRNIKKIWPDHNQGMYCC 539 (686)
Q Consensus 460 ~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 539 (686)
.|.. +++.+.. ..+.++.+|+++.|- ..++.++ ......+++|+.+++.+... . +.. ...+
T Consensus 317 ~lp~--~v~~I~~-~aF~~C~~L~~i~ip--~sv~~I~-------~~aF~~C~~L~~i~~~~~~~--~-~~~----~~~~ 377 (394)
T 4gt6_A 317 DIPE--GITQILD-DAFAGCEQLERIAIP--SSVTKIP-------ESAFSNCTALNNIEYSGSRS--Q-WNA----ISTD 377 (394)
T ss_dssp ECCT--TCCEECT-TTTTTCTTCCEEEEC--TTCCBCC-------GGGGTTCTTCCEEEESSCHH--H-HHT----CBCC
T ss_pred EeCC--cccEehH-hHhhCCCCCCEEEEC--cccCEEh-------HhHhhCCCCCCEEEECCcee--e-hhh----hhcc
Confidence 7754 4666643 346778888888884 2355554 23456678888888876421 1 111 2245
Q ss_pred CCCeEEEEe
Q 005634 540 QNLTTVIVD 548 (686)
Q Consensus 540 ~~L~~L~i~ 548 (686)
.+|+.+.+.
T Consensus 378 ~~L~~i~i~ 386 (394)
T 4gt6_A 378 SGLQNLPVA 386 (394)
T ss_dssp CCC------
T ss_pred CCCCEEEeC
Confidence 667766654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=0.0091 Score=61.50 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=72.2
Q ss_pred ccccchhHhcCCC-CccEEEecCccCCCCc-hhhhcCCCCcEEEccCCC---CCC--cccccCCCCCCEEEccCCCCCCc
Q 005634 163 SMQISDLFFEGTE-ELKVLSLNRIHFSSLP-SSLGRLINLQTLCLDGCG---LKD--IAIVGQLKKLEILSLRDSKIKQL 235 (686)
Q Consensus 163 ~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~~~~---l~~--~~~i~~L~~L~~L~l~~~~i~~l 235 (686)
...+.+..|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++. ...|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3456666677775 5888888754 55543 357788888888887653 444 255666777777666543 4444
Q ss_pred ch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCC
Q 005634 236 PL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDS 278 (686)
Q Consensus 236 p~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 278 (686)
+. .+..+.+|+.+.+... +..++...+..+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 33 3566777777777643 55666665667777777776543
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.74 E-value=0.029 Score=57.29 Aligned_cols=102 Identities=14% Similarity=0.254 Sum_probs=45.8
Q ss_pred hcCCCCccEEEecCccCCCC-chhhhcCCCCcEEEccCCCCCC--cccccCCCCCCEEEccCCCCCCcch-hhcCCCCCC
Q 005634 171 FEGTEELKVLSLNRIHFSSL-PSSLGRLINLQTLCLDGCGLKD--IAIVGQLKKLEILSLRDSKIKQLPL-EIGQLTRLQ 246 (686)
Q Consensus 171 ~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~ 246 (686)
+..+..|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++. ...+.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344455555554433 1211 123344555555555433 222 23444455555555533 2333332 244455555
Q ss_pred EEeCcCCcCccccChhhhcCCCCCcEEEec
Q 005634 247 LLDLSDCRSLVVIAPNVISKFSRLKELYMG 276 (686)
Q Consensus 247 ~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 276 (686)
.+.+.++. ++.++..++.++++|+.+.+.
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 55554433 445554445555555555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.73 E-value=0.014 Score=49.02 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=38.6
Q ss_pred EEEccCCCCC--CcchhhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCCcc
Q 005634 224 ILSLRDSKIK--QLPLEIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDSFS 280 (686)
Q Consensus 224 ~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 280 (686)
.++.++.+++ .+|..+. .+|++|+|++|. ++.+|.+.+..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666677776 7775433 367788887777 7777777677778888888877754
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.42 E-value=0.064 Score=54.69 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=95.5
Q ss_pred CCCCcceEEcccCCCcccccccchhHhcCCCCccEEEecCccCCCCc-hhhhcCCCCcEEEccCCCCCC--cccccCCCC
Q 005634 145 QCPHLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLNRIHFSSLP-SSLGRLINLQTLCLDGCGLKD--IAIVGQLKK 221 (686)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~ 221 (686)
.+.+++.+.+..+ ...+....|..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+... ++. ...+..+.+
T Consensus 215 ~~~~l~~i~~~~~-----~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 215 YGKNLKKITITSG-----VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TCSSCSEEECCTT-----CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccceeeeccc-----eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 5778888887654 34566666788999999998765 44443 35678889999988654 444 367888999
Q ss_pred CCEEEccCCCCCCcch-hhcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecCC
Q 005634 222 LEILSLRDSKIKQLPL-EIGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGDS 278 (686)
Q Consensus 222 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 278 (686)
|+.+.+.++.++.++. .+.++.+|+.+.+..+ ++.++..++.++++|+.+.+..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 9999998888887765 4788899999999753 78888877889999998887543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.34 E-value=0.027 Score=50.86 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCCCccEEEecCc-cCC-----CCchhhhcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccCCCCC-----Cc
Q 005634 173 GTEELKVLSLNRI-HFS-----SLPSSLGRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRDSKIK-----QL 235 (686)
Q Consensus 173 ~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~~~i~-----~l 235 (686)
+-..|+.|+|+++ .+. .+-+.+..-+.|+.|+|++|.+.+ . +.+..=+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3444555555543 332 133334444555555555555543 1 12223345666666665555 22
Q ss_pred chhhcCCCCCCEEeCcCCc--Cccc-----cChhhhcCCCCCcEEEecCCc
Q 005634 236 PLEIGQLTRLQLLDLSDCR--SLVV-----IAPNVISKFSRLKELYMGDSF 279 (686)
Q Consensus 236 p~~i~~L~~L~~L~l~~~~--~l~~-----lp~~~l~~l~~L~~L~l~~~~ 279 (686)
-+.+..-+.|++|+++++. .++. +... +..=+.|..|+++.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCC
Confidence 2334444456666665432 1221 1121 3444566667665543
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.25 E-value=0.024 Score=51.18 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=28.1
Q ss_pred cCCCCccEEEecCccCC-----CCchhhhcCCCCcEEEccCCCCCC--c----ccccCCCCCCEEEccC
Q 005634 172 EGTEELKVLSLNRIHFS-----SLPSSLGRLINLQTLCLDGCGLKD--I----AIVGQLKKLEILSLRD 229 (686)
Q Consensus 172 ~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~l~~ 229 (686)
..-+.|+.|+|++|.+. .+.+.+..=+.|++|+|++|.|.+ . +.+..=..|++|+|++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34455555555555553 233344444555555555555543 1 2233334455555554
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.58 E-value=0.046 Score=45.86 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=21.9
Q ss_pred EEEecCccCC--CCchhhhcCCCCcEEEccCCCCCC-c-ccccCCCCCCEEEccCC
Q 005634 179 VLSLNRIHFS--SLPSSLGRLINLQTLCLDGCGLKD-I-AIVGQLKKLEILSLRDS 230 (686)
Q Consensus 179 ~L~l~~~~~~--~lp~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~l~~~ 230 (686)
+++.+++.++ .+|..+. .+|++|+|++|.|+. + ..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4445555544 4443321 234444444444444 2 33344444444444444
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.59 E-value=69 Score=24.71 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=20.3
Q ss_pred hcCCCCCCEEeCcCCcCccccChhhhcCCCCCcEEEecC
Q 005634 239 IGQLTRLQLLDLSDCRSLVVIAPNVISKFSRLKELYMGD 277 (686)
Q Consensus 239 i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 277 (686)
+..+.+|+.+.+... ++.+....+.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 455556666655542 4555555455666666665543
Done!