Query 005635
Match_columns 686
No_of_seqs 382 out of 2153
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 11:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 99.9 4.4E-27 9.4E-32 269.8 14.1 416 158-624 119-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 1.5E-21 3.3E-26 220.0 13.0 169 169-347 9-207 (623)
3 PTZ00130 heat shock protein 90 99.8 1.1E-20 2.5E-25 219.3 13.6 198 132-347 40-269 (814)
4 PRK05218 heat shock protein 90 99.8 1.7E-19 3.7E-24 207.9 22.4 307 169-557 8-350 (613)
5 PRK14083 HSP90 family protein; 99.8 2.5E-19 5.5E-24 205.2 22.6 297 174-556 11-329 (601)
6 KOG1845 MORC family ATPases [C 99.8 4.4E-21 9.5E-26 220.7 3.7 336 224-626 1-357 (775)
7 PTZ00272 heat shock protein 83 99.8 4.8E-19 1E-23 205.2 14.9 163 174-347 13-204 (701)
8 KOG0019 Molecular chaperone (H 99.7 7.5E-17 1.6E-21 179.5 9.8 159 180-349 51-235 (656)
9 PF13589 HATPase_c_3: Histidin 99.7 1.5E-17 3.2E-22 157.3 2.1 102 187-293 3-105 (137)
10 KOG0020 Endoplasmic reticulum 99.6 2.9E-16 6.3E-21 170.4 7.5 157 181-349 90-281 (785)
11 PF07496 zf-CW: CW-type Zinc F 99.6 1.4E-16 3.1E-21 126.1 1.0 45 576-620 1-49 (50)
12 COG0323 MutL DNA mismatch repa 99.5 5.5E-13 1.2E-17 154.7 19.5 108 168-284 4-117 (638)
13 PRK00095 mutL DNA mismatch rep 99.4 1.1E-11 2.4E-16 143.9 22.1 140 167-319 2-147 (617)
14 TIGR00585 mutl DNA mismatch re 99.3 1.1E-11 2.5E-16 132.4 12.2 140 167-319 2-148 (312)
15 PRK05559 DNA topoisomerase IV 99.2 3.6E-11 7.9E-16 139.7 10.7 180 161-368 14-212 (631)
16 TIGR01055 parE_Gneg DNA topois 99.2 4E-11 8.7E-16 139.0 9.4 177 161-368 10-205 (625)
17 PRK14939 gyrB DNA gyrase subun 99.2 1.1E-10 2.3E-15 137.2 11.7 181 161-368 13-210 (756)
18 COG1389 DNA topoisomerase VI, 99.1 3.5E-10 7.6E-15 123.6 11.4 135 184-323 34-183 (538)
19 PRK05644 gyrB DNA gyrase subun 99.1 2.2E-10 4.8E-15 133.3 10.6 181 160-368 13-210 (638)
20 TIGR01059 gyrB DNA gyrase, B s 99.1 3.6E-10 7.9E-15 132.1 9.9 180 161-368 7-203 (654)
21 COG0187 GyrB Type IIA topoisom 99.0 3.6E-10 7.7E-15 128.2 6.7 182 161-369 12-212 (635)
22 TIGR01058 parE_Gpos DNA topois 99.0 1.2E-09 2.7E-14 126.9 9.1 179 161-368 11-208 (637)
23 KOG1979 DNA mismatch repair pr 98.9 3.3E-09 7.1E-14 118.5 9.3 140 167-318 7-152 (694)
24 KOG1978 DNA mismatch repair pr 98.9 4.6E-09 1E-13 119.7 8.2 106 170-283 3-113 (672)
25 smart00433 TOP2c Topoisomerase 98.8 1.5E-08 3.2E-13 117.5 10.5 153 190-368 5-176 (594)
26 PHA02569 39 DNA topoisomerase 98.8 9.5E-09 2.1E-13 118.9 7.6 181 161-368 5-224 (602)
27 TIGR01052 top6b DNA topoisomer 98.8 7.9E-08 1.7E-12 108.4 14.2 164 185-367 27-204 (488)
28 PRK04184 DNA topoisomerase VI 98.8 8.2E-08 1.8E-12 109.3 14.4 96 187-285 37-142 (535)
29 PTZ00109 DNA gyrase subunit b; 98.7 1.2E-08 2.6E-13 120.6 6.3 192 161-369 106-359 (903)
30 PTZ00108 DNA topoisomerase 2-l 98.7 5.4E-08 1.2E-12 120.1 9.7 186 159-368 9-242 (1388)
31 PRK14868 DNA topoisomerase VI 98.6 1.6E-07 3.5E-12 109.5 11.6 129 186-320 46-188 (795)
32 PLN03237 DNA topoisomerase 2; 98.6 1.1E-07 2.4E-12 117.1 10.1 189 158-368 30-260 (1465)
33 PLN03128 DNA topoisomerase 2; 98.6 9.8E-08 2.1E-12 116.7 9.5 186 159-368 6-235 (1135)
34 PRK14867 DNA topoisomerase VI 98.2 4.1E-06 8.9E-11 97.5 9.9 94 187-285 37-140 (659)
35 PF02518 HATPase_c: Histidine 98.2 1.3E-06 2.9E-11 78.3 3.3 88 187-282 6-98 (111)
36 KOG1977 DNA mismatch repair pr 97.7 2E-05 4.4E-10 90.2 3.7 136 173-319 7-149 (1142)
37 COG3290 CitA Signal transducti 97.3 0.00058 1.3E-08 77.5 7.7 84 186-281 427-518 (537)
38 smart00387 HATPase_c Histidine 97.2 0.00077 1.7E-08 57.8 5.8 73 187-267 6-80 (111)
39 cd00075 HATPase_c Histidine ki 97.1 0.00098 2.1E-08 56.2 5.6 86 188-282 2-93 (103)
40 PRK10604 sensor protein RstB; 97.0 0.0014 3E-08 72.9 7.8 89 187-282 320-411 (433)
41 PRK09470 cpxA two-component se 96.8 0.0026 5.5E-08 70.1 7.5 89 187-282 354-445 (461)
42 PRK09467 envZ osmolarity senso 96.8 0.0032 6.9E-08 69.1 8.0 86 187-281 332-420 (435)
43 PRK10364 sensor protein ZraS; 96.8 0.0031 6.8E-08 70.3 7.6 83 187-282 349-436 (457)
44 PRK10755 sensor protein BasS/P 96.7 0.0029 6.3E-08 67.9 6.4 87 186-283 247-338 (356)
45 PRK09303 adaptive-response sen 96.6 0.0057 1.2E-07 67.1 8.4 89 187-283 273-366 (380)
46 COG0642 BaeS Signal transducti 96.6 0.0037 8.1E-08 63.6 6.2 59 185-249 227-286 (336)
47 PRK11086 sensory histidine kin 96.5 0.0068 1.5E-07 68.3 8.4 82 187-281 434-522 (542)
48 TIGR01386 cztS_silS_copS heavy 96.5 0.0047 1E-07 67.8 6.9 87 187-280 354-445 (457)
49 TIGR02938 nifL_nitrog nitrogen 96.5 0.0058 1.3E-07 67.1 7.3 86 187-282 388-482 (494)
50 PRK11006 phoR phosphate regulo 96.5 0.0072 1.6E-07 66.9 8.1 90 186-282 317-411 (430)
51 TIGR02966 phoR_proteo phosphat 96.5 0.0093 2E-07 61.9 8.4 89 187-282 230-323 (333)
52 PRK10549 signal transduction h 96.2 0.01 2.2E-07 65.8 7.3 89 187-282 353-446 (466)
53 PRK11100 sensory histidine kin 96.2 0.011 2.4E-07 65.0 7.6 89 186-282 368-461 (475)
54 PRK15053 dpiB sensor histidine 96.2 0.0079 1.7E-07 68.4 6.6 85 187-281 433-526 (545)
55 PRK10815 sensor protein PhoQ; 96.1 0.011 2.5E-07 67.2 7.2 84 187-281 379-465 (485)
56 TIGR02916 PEP_his_kin putative 96.1 0.011 2.3E-07 70.1 7.0 83 187-282 580-668 (679)
57 PRK11360 sensory histidine kin 95.9 0.018 4E-07 64.7 7.4 83 187-282 501-589 (607)
58 COG4191 Signal transduction hi 95.9 0.012 2.7E-07 67.6 5.9 57 187-249 498-559 (603)
59 PRK10337 sensor protein QseC; 95.8 0.021 4.6E-07 63.1 7.2 84 187-282 353-439 (449)
60 PRK15347 two component system 95.6 0.026 5.7E-07 68.2 7.8 86 187-283 514-603 (921)
61 TIGR03785 marine_sort_HK prote 95.5 0.034 7.4E-07 66.4 7.9 89 187-282 598-691 (703)
62 PRK11091 aerobic respiration c 95.4 0.035 7.6E-07 66.4 7.9 92 187-283 399-494 (779)
63 TIGR01925 spIIAB anti-sigma F 95.4 0.044 9.5E-07 51.1 6.7 82 186-281 39-125 (137)
64 PRK09835 sensor kinase CusS; P 95.3 0.043 9.3E-07 61.0 7.7 88 186-281 375-468 (482)
65 PRK13837 two-component VirA-li 95.2 0.036 7.9E-07 67.1 7.2 90 187-283 561-664 (828)
66 PRK11073 glnL nitrogen regulat 95.1 0.047 1E-06 58.1 6.9 89 187-282 238-336 (348)
67 PRK11466 hybrid sensory histid 94.8 0.063 1.4E-06 65.2 7.8 86 187-283 562-651 (914)
68 TIGR02956 TMAO_torS TMAO reduc 94.8 0.064 1.4E-06 65.4 7.7 87 187-283 580-672 (968)
69 PRK10490 sensor protein KdpD; 94.7 0.052 1.1E-06 66.6 6.5 88 186-282 778-870 (895)
70 PRK11107 hybrid sensory histid 94.3 0.1 2.3E-06 63.0 7.9 94 187-283 409-507 (919)
71 COG3850 NarQ Signal transducti 94.1 0.072 1.6E-06 60.9 5.6 75 187-284 482-558 (574)
72 KOG0787 Dehydrogenase kinase [ 94.0 0.13 2.7E-06 56.7 6.9 74 187-266 261-349 (414)
73 PRK10841 hybrid sensory kinase 94.0 0.11 2.5E-06 63.9 7.5 89 187-283 563-656 (924)
74 PRK10547 chemotaxis protein Ch 93.7 0.14 3.1E-06 60.9 7.3 86 189-282 388-511 (670)
75 PRK03660 anti-sigma F factor; 93.5 0.28 6E-06 46.2 7.7 45 186-236 39-88 (146)
76 TIGR01924 rsbW_low_gc serine-p 93.5 0.14 3E-06 50.0 5.6 85 186-280 42-131 (159)
77 PRK04069 serine-protein kinase 93.4 0.13 2.9E-06 50.0 5.4 84 187-280 43-131 (161)
78 PRK10618 phosphotransfer inter 93.3 0.2 4.4E-06 61.6 8.0 91 187-283 566-661 (894)
79 PF13581 HATPase_c_2: Histidin 92.7 0.19 4.1E-06 46.0 5.1 77 187-278 32-113 (125)
80 COG4585 Signal transduction hi 92.6 0.14 3E-06 56.0 4.6 71 186-282 279-353 (365)
81 PRK09959 hybrid sensory histid 92.4 0.32 6.9E-06 61.1 8.1 93 187-283 829-925 (1197)
82 COG2205 KdpD Osmosensitive K+ 91.2 0.44 9.4E-06 57.2 6.9 60 187-250 776-836 (890)
83 PRK11644 sensory histidine kin 91.1 0.22 4.7E-06 57.1 4.3 45 187-237 411-456 (495)
84 PF07744 SPOC: SPOC domain; I 90.9 0.098 2.1E-06 47.9 1.0 36 11-46 78-119 (119)
85 PRK13557 histidine kinase; Pro 90.8 0.61 1.3E-05 52.3 7.5 92 187-283 278-383 (540)
86 PRK10600 nitrate/nitrite senso 90.3 0.27 5.8E-06 56.9 4.2 46 186-237 469-515 (569)
87 COG3920 Signal transduction hi 88.4 0.51 1.1E-05 48.7 4.1 45 187-236 123-173 (221)
88 COG2172 RsbW Anti-sigma regula 88.2 0.95 2.1E-05 43.9 5.6 85 186-284 40-130 (146)
89 COG4192 Signal transduction hi 87.9 0.92 2E-05 51.4 5.9 60 186-250 564-626 (673)
90 PRK13560 hypothetical protein; 87.5 0.58 1.3E-05 55.3 4.5 44 189-237 714-762 (807)
91 COG0643 CheA Chemotaxis protei 87.5 1 2.2E-05 54.1 6.4 88 188-283 434-562 (716)
92 COG2972 Predicted signal trans 87.0 0.98 2.1E-05 51.2 5.7 54 186-243 350-407 (456)
93 COG5002 VicK Signal transducti 86.4 0.92 2E-05 49.9 4.7 72 187-266 343-417 (459)
94 COG5000 NtrY Signal transducti 86.3 0.86 1.9E-05 53.2 4.7 52 187-244 601-661 (712)
95 COG4251 Bacteriophytochrome (l 81.8 2.3 4.9E-05 50.1 5.6 52 187-244 637-691 (750)
96 smart00249 PHD PHD zinc finger 79.5 1.5 3.2E-05 32.6 2.3 33 574-606 10-45 (47)
97 PRK10935 nitrate/nitrite senso 79.5 2.1 4.5E-05 48.9 4.5 46 187-237 472-518 (565)
98 PRK13559 hypothetical protein; 77.8 2.2 4.8E-05 45.8 3.8 47 187-237 268-319 (361)
99 COG3852 NtrB Signal transducti 73.4 6.1 0.00013 43.1 5.5 58 187-244 242-309 (363)
100 COG4564 Signal transduction hi 72.6 6.4 0.00014 43.3 5.5 73 190-285 363-439 (459)
101 KOG0355 DNA topoisomerase type 70.5 16 0.00035 44.3 8.6 88 185-281 52-154 (842)
102 COG3851 UhpB Signal transducti 59.0 10 0.00023 42.2 3.9 44 187-236 411-455 (497)
103 PF00628 PHD: PHD-finger; Int 56.1 2.5 5.5E-05 33.0 -1.0 35 572-606 8-46 (51)
104 COG3275 LytS Putative regulato 43.5 20 0.00043 41.3 3.1 45 187-237 457-507 (557)
105 PLN00039 photosystem II reacti 26.2 39 0.00084 31.6 1.6 15 14-28 85-99 (111)
106 PRK13611 photosystem II reacti 26.1 39 0.00085 31.2 1.6 15 14-28 80-94 (104)
107 COG2865 Predicted transcriptio 25.9 74 0.0016 36.8 4.1 68 185-266 269-351 (467)
108 PRK13612 photosystem II reacti 25.1 42 0.00091 31.5 1.6 15 14-28 87-101 (113)
109 TIGR03047 PS_II_psb28 photosys 25.0 43 0.00092 31.3 1.6 15 14-28 84-98 (109)
110 CHL00128 psbW photosystem II p 24.2 45 0.00097 31.3 1.6 14 15-28 88-101 (113)
111 PF05180 zf-DNL: DNL zinc fing 23.7 33 0.00072 29.2 0.6 23 572-594 23-45 (66)
112 PF03912 Psb28: Psb28 protein; 23.0 46 0.00099 31.0 1.4 13 15-27 85-97 (108)
113 KOG1973 Chromatin remodeling p 22.1 39 0.00084 36.2 0.9 30 576-606 230-263 (274)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.4e-27 Score=269.83 Aligned_cols=416 Identities=21% Similarity=0.233 Sum_probs=286.9
Q ss_pred eeccCCCCcceeecChHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEeceeccCCCCcCEEEEE-----e
Q 005635 158 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D 229 (686)
Q Consensus 158 ~~~~~~~~~~~v~l~p~~L~~lgt~~~~~~~~AIaELIdNS~DA---~At~I~I~i~~~~~~~~~~~~~~L~I~-----D 229 (686)
++....++-.+++++|+|||+++++| +|.++|++||+|||+|. +|+.+.|.-- +.........++|. |
T Consensus 119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I---~p~~d~~i~a~~v~~~~~s~ 194 (775)
T KOG1845|consen 119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYI---NPVMDIFIRALVVQLKRISD 194 (775)
T ss_pred ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeee---cccccccceeEEeeccceec
Confidence 34455555699999999999999999 79999999999999998 5666544321 11111223445555 7
Q ss_pred CCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeC------CCCceeEEEEEec--CCCee
Q 005635 230 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN 301 (686)
Q Consensus 230 NG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~------g~~s~~~ls~sf~--~g~~~ 301 (686)
||+||.++-+..+|.+|.+.+. +-...+|+||+||+++.|++|.++.|++|.. ..+++|+++++|. ++..+
T Consensus 195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d 273 (775)
T KOG1845|consen 195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD 273 (775)
T ss_pred cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence 7999999999999999988775 3467899999999999999999999999942 2578999999994 57889
Q ss_pred EEEec----cccCCC---CcEEEEEecCcchhhhhhhhhh-----hcccCCCchh--hHHHH-hh------h----cc-c
Q 005635 302 LEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEK-AG------L----FQ-D 355 (686)
Q Consensus 302 i~VP~----~~~~~~---Gt~I~l~~~~~se~~~~~~l~~-----I~kySpF~s~--~I~e~-~~------~----~~-~ 355 (686)
++||+ ..++.. -..|.. +.. ..|..++.. +++|+||.+. .+.+. .. . +. .
T Consensus 274 ~iv~~~~i~~~~e~~~~~~~~i~~--~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~ 349 (775)
T KOG1845|consen 274 FIVPMRLIKMDYEKSDQLWQGILY--KSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIM 349 (775)
T ss_pred eeEecchhhhhhhcccccccceee--ccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhc
Confidence 99998 444431 112222 111 223344444 9999999984 22220 00 1 11 2
Q ss_pred CCCCcEEEEEcccccC---CcceeeccCCCCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcC--CCe
Q 005635 356 KCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--PRM 430 (686)
Q Consensus 356 ~~~GT~IiI~nL~r~~---~~~eLDF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~--Prm 430 (686)
..+||.+|+|++++|. +-.++||+.+ +++|. -...++++.|.++||+. ++|
T Consensus 350 ~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~~~ 405 (775)
T KOG1845|consen 350 NKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRLRF 405 (775)
T ss_pred cCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccccc
Confidence 4699999999997663 2366777654 23432 13456899999999975 899
Q ss_pred EEEEcCeeecccccccccCceeee--ccccc--c-----eEEEEEEceeccccc-ceeceEEEEEcCceee----eeeee
Q 005635 431 KIYVQGSLVRSRPLAKSLNKTCVE--TGIIM--G-----KSAHLTLGRCQLEWE-QMNCGIFLYWHGRLIE----AYKRV 496 (686)
Q Consensus 431 ~I~LnG~~V~~~~i~~~L~~~~v~--~~~~~--~-----~~V~It~Gf~~~e~~-~~~~Gi~vY~nnRLI~----~~~kV 496 (686)
.+.+.|+.+.++.+....+++... .+... + ..+....|+.+...+ -...|+.|||.+|||+ ++||.
T Consensus 406 ~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~ 485 (775)
T KOG1845|consen 406 KSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKI 485 (775)
T ss_pred hhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeee
Confidence 999999999999988766554321 11100 0 111223455544322 2456999999999999 99999
Q ss_pred cccccCCCCCccEEEEEecCCccccCCCceecccCCCCCCCchhHHHHHHHHHHHHHHHHhhcccccccccc---cCCCC
Q 005635 497 GGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GALYK 573 (686)
Q Consensus 497 g~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~~---~~~~~ 573 (686)
++. ....++++++++..+ +. +++|++|+|+.+-.-+.++.++.++++.||...++.+.+... ...+.
T Consensus 486 ~n~--~~s~~~~~~~il~~n-~~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~ 555 (775)
T KOG1845|consen 486 DNA--TGSLGQAVIPILVGN-FV-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERES 555 (775)
T ss_pred cCC--Cccccccccceeccc-cc-------ccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcc
Confidence 874 457899999999998 33 469999999999989999999999999999999998876521 11111
Q ss_pred -----CCCceecCccchhhccCCCCCCCCCCCCCceeccCC---CCCCCCCCcccccCC
Q 005635 574 -----PDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 624 (686)
Q Consensus 574 -----~~~~wvQCd~C~KWR~lp~~~~~~~lp~~W~C~~n~---~~~~C~~pEe~~~~~ 624 (686)
....--||- +- ++. ...--..|+|..++ .++.|+-+-.....+
T Consensus 556 ~~~~~Ke~~~~~~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 556 TTTVVKEEKPENNH---LS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred cceeecccccccch---hc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence 111112221 11 111 12234589999998 357776655544444
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-21 Score=219.98 Aligned_cols=169 Identities=25% Similarity=0.345 Sum_probs=133.8
Q ss_pred eecCh-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 005635 169 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 231 (686)
Q Consensus 169 v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG 231 (686)
+.++- ..|+.+..+.|+....+|+|||+||.||. ...+.|.|.. .....+|+|.|||
T Consensus 9 Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNG 82 (623)
T COG0326 9 FQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNG 82 (623)
T ss_pred hhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCC
Confidence 33443 45566677788889999999999999993 1346666653 2456899999999
Q ss_pred CCCCHHHHHHhhh-cccCCC--------CC-CCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635 232 HGMTHQDVVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 301 (686)
Q Consensus 232 ~GMt~~eL~~~l~-fG~s~k--------~~-~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 301 (686)
+||+++|+++.++ ++.|.. .. ++...||||||||||||| ++++|+|.|++.+..... .|.+ .|...
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEGE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCCc
Confidence 9999999999875 333321 11 367899999999999999 999999999999865544 6665 67788
Q ss_pred EEEeccccCCC-CcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 302 LEIPIVSYYRK-GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 302 i~VP~~~~~~~-Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
++|.....+.. ||.|+|+++++. +++.+|.++. |.+||.|..+||.
T Consensus 159 ytv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~ 207 (623)
T COG0326 159 YTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIY 207 (623)
T ss_pred eEEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceE
Confidence 99987777774 999999999754 7889999976 9999999999886
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.84 E-value=1.1e-20 Score=219.27 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=148.3
Q ss_pred cCCCcccccCCCCcccccCCCCCCcceeccCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccccCC-------
Q 005635 132 KFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA------- 203 (686)
Q Consensus 132 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~A------- 203 (686)
.-.|.|-.|.-+.+-+++... |+.. .....++..- ..|+.+..+.|+.+..||+|||+||+||.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~--~~~~-----~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~l 112 (814)
T PTZ00130 40 EEKEEVKKDRDNIPEIEDGEK--PTSG-----IEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSL 112 (814)
T ss_pred CCcchhhcccccCcccccCCC--CCcc-----cceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHc
Confidence 345888888888887766543 2211 1122355544 566777888889999999999999999964
Q ss_pred ---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCC--------C-CCCCCcccccCce
Q 005635 204 ---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVG 264 (686)
Q Consensus 204 ---------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k--------~-~~~~~~IG~fGvG 264 (686)
..+.|.|.. ......|+|.|||+||++++|.+.++ +++|.. . ..+...|||||||
T Consensus 113 t~~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVG 186 (814)
T PTZ00130 113 SDESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVG 186 (814)
T ss_pred CCchhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccc
Confidence 356777763 23467999999999999999988764 555431 1 1246799999999
Q ss_pred eeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccc---cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccC
Q 005635 265 FKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFS 339 (686)
Q Consensus 265 fKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~---~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kyS 339 (686)
|+|+|| ++++|.|.||+.+. .++.|.+ .|...+.|...+ -..+||.|+|+++++. ++...+.++. |.+||
T Consensus 187 FYSaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS 261 (814)
T PTZ00130 187 FYSAFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYS 261 (814)
T ss_pred hhheee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhh
Confidence 999999 99999999998763 4677876 455567665433 2368999999999765 6788888876 99999
Q ss_pred CCchhhHH
Q 005635 340 PFNKYLIG 347 (686)
Q Consensus 340 pF~s~~I~ 347 (686)
.|..+||+
T Consensus 262 ~fI~~PI~ 269 (814)
T PTZ00130 262 QFIQYPIY 269 (814)
T ss_pred ccCCCCEE
Confidence 99999886
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.83 E-value=1.7e-19 Score=207.89 Aligned_cols=307 Identities=21% Similarity=0.234 Sum_probs=188.6
Q ss_pred eecCh-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 005635 169 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 231 (686)
Q Consensus 169 v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG 231 (686)
++++- +.|..++.+.|+.+..+|+|||+||+||. +....|.|.. ..+...|.|.|||
T Consensus 8 Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~DnG 81 (613)
T PRK05218 8 FQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDNG 81 (613)
T ss_pred hhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEECC
Confidence 44444 56777788888999999999999999993 3445566542 1234579999999
Q ss_pred CCCCHHHHHHhh-hcccCCC--------C--CCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCe
Q 005635 232 HGMTHQDVVRMT-YFGHKQP--------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 300 (686)
Q Consensus 232 ~GMt~~eL~~~l-~fG~s~k--------~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~ 300 (686)
+||+.+++...+ ..|.|.. . ..+...||+||+||+++++ ++++++|.||+.+....++.|.. .+..
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g~~ 158 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DGEG 158 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eCCc
Confidence 999999999876 4666531 1 1246789999999988766 99999999999774456777765 4444
Q ss_pred eEEEeccccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHHHHhhhcccCCCCc-EEEEEcccccCCcceee
Q 005635 301 NLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGT-QIYIWNLDQWGSNYCLE 377 (686)
Q Consensus 301 ~i~VP~~~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~e~~~~~~~~~~GT-~IiI~nL~r~~~~~eLD 377 (686)
.+.+....-..+||.|+++++++. ++...+.++. |.+|+.|..+||.- . |+ .-.+.+ ...-
T Consensus 159 ~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~-----~----~~~~~~in~-------~~~~ 222 (613)
T PRK05218 159 EYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL-----E----KEEEETINS-------ASAL 222 (613)
T ss_pred eeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE-----e----cccceeecC-------Cccc
Confidence 555544333468999999998764 5566677765 88999888776541 1 00 000100 0111
Q ss_pred ccCCCCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhh---cCCCeEEEEcCee-ecccccccccCceee
Q 005635 378 WDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF---LVPRMKIYVQGSL-VRSRPLAKSLNKTCV 453 (686)
Q Consensus 378 F~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLY---L~Prm~I~LnG~~-V~~~~i~~~L~~~~v 453 (686)
|... +.|+. +.-...|..-++ -+|-+.|.++... +..+-+ .
T Consensus 223 w~~~--------~~~i~-------------------~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gl--------l 267 (613)
T PRK05218 223 WTRS--------KSEIT-------------------DEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGL--------L 267 (613)
T ss_pred eecC--------Ccccc-------------------HHHHHHHhhhhcccccCCcEEEEcccCCceEEEEE--------E
Confidence 1110 01211 111123333332 2344444432111 111100 0
Q ss_pred ecccccceEEEEEEceecccccceeceEEEEEcCceeeee-eeecccccCCCCCccEEEEEecCCccccCCCceecccCC
Q 005635 454 ETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNK 532 (686)
Q Consensus 454 ~~~~~~~~~V~It~Gf~~~e~~~~~~Gi~vY~nnRLI~~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnK 532 (686)
+.|.. ..+++-. .....|+.+|.|+|+|.-. ..+-|. ..+=|-|||+++.| | |+-+.
T Consensus 268 ~iP~~------~~~~~~~---~~~~~~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL--p------lnvSR 325 (613)
T PRK05218 268 YIPKK------APFDLFN---RDRKGGLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL--P------LNVSR 325 (613)
T ss_pred EeCCC------Cccchhh---hcccccEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC--C------CccCH
Confidence 11110 0011110 1245899999999999743 345664 35667889999875 3 35667
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHh
Q 005635 533 QGFLDCEPYARLEEWLGKVADEYWD 557 (686)
Q Consensus 533 QdFe~t~~y~~L~~~L~e~l~eYW~ 557 (686)
..+..+..++++.+.|.+++.++..
T Consensus 326 E~lq~~~~l~~i~~~l~~kv~~~l~ 350 (613)
T PRK05218 326 EILQEDRVVKKIRKAITKKVLDELE 350 (613)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888887765543
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.83 E-value=2.5e-19 Score=205.23 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=190.9
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCCC----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 243 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~At----------~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l 243 (686)
..|+.++.+.|+++..+|+|||+||+||.+. .|.|.+. ..+...|+|.|||.||+.+++.+.+
T Consensus 11 ~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 11 GVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 5667778888899999999999999999764 4555541 1236789999999999999999865
Q ss_pred -hcccCCCCC-----CCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEec--cccCCCCcE
Q 005635 244 -YFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI--VSYYRKGQF 315 (686)
Q Consensus 244 -~fG~s~k~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~--~~~~~~Gt~ 315 (686)
.+|.|.+.. .+...||+|||||++++| +|+++.|.|++.+ ...++.|.+..++ .+.+.. ..-..+||+
T Consensus 84 ~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~-~~~~~~W~~~~~g--~y~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 84 ATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK-DGPAVEWRGKADG--TYSVRKLETERAEPGTT 159 (601)
T ss_pred hhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC-CCceEEEEECCCC--ceEEEeCCCCCCCCCCE
Confidence 678766533 135689999999998888 9999999999875 3457778774333 455543 233458999
Q ss_pred EEEEecCcc-hhhhhhhhhh-hcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCCCCCCCCCCCCCe
Q 005635 316 MELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI 393 (686)
Q Consensus 316 I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLDF~~d~~~~~~~~~~DI 393 (686)
|+++++++. ++..++.++. |.+||.|..+||.- .|+...|+...- -|..+ +.+|
T Consensus 160 I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l---------~~~~~~iN~~~~-------lW~~~--------~~ei 215 (601)
T PRK14083 160 VYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV---------EGEKGGVNETPP-------PWTRD--------YPDP 215 (601)
T ss_pred EEEEecCchhhhccHHHHHHHHHHHhccCCCCccc---------CCceeeecCCCC-------CccCC--------cccc
Confidence 999998654 5566667765 89999999988862 122222221110 11111 1121
Q ss_pred EeecccccCCCCcccccCcchhhHHHHHhhhhc-CCCeEEEEcCeeecccccccccCceeeecccccceEEEEEEceecc
Q 005635 394 LIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQL 472 (686)
Q Consensus 394 ~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL-~Prm~I~LnG~~V~~~~i~~~L~~~~v~~~~~~~~~V~It~Gf~~~ 472 (686)
. ..+.-..+|..-+|= +|-+.|.++-.- . +. ..+-..++....
T Consensus 216 t-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~-~~---------------~~~Ly~iP~~~~ 259 (601)
T PRK14083 216 E-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---G-GL---------------EGVAYVLPYAVS 259 (601)
T ss_pred C-----------------ccHHHHHHHHHHhcCCCchheeeecccc---h-hh---------------eEEEEecCCCCC
Confidence 1 001123355555543 465555554221 0 00 111111121111
Q ss_pred cccceeceEEEEEcCceeee-eeeecccccCCCCCccEEEEEecCCccccCCCceecccCCCCCCCchhHHHHHHHHHHH
Q 005635 473 EWEQMNCGIFLYWHGRLIEA-YKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKV 551 (686)
Q Consensus 473 e~~~~~~Gi~vY~nnRLI~~-~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~ 551 (686)
. ....|+-+|+|+=||.- .+.+-|. ..+=|=|||+++.| | ++-+...+.....++++.+.|.++
T Consensus 260 -~-~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir~~i~kk 324 (601)
T PRK14083 260 -P-AARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDEL--R------PTASREALYEDDALAAVREELGEA 324 (601)
T ss_pred -c-cccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCC--C------CccCHHHHccCHHHHHHHHHHHHH
Confidence 1 13468999999999963 3345554 34556799999875 3 356666788888888888888877
Q ss_pred HHHHH
Q 005635 552 ADEYW 556 (686)
Q Consensus 552 l~eYW 556 (686)
+.++.
T Consensus 325 i~~~L 329 (601)
T PRK14083 325 IRKWL 329 (601)
T ss_pred HHHHH
Confidence 76544
No 6
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.4e-21 Score=220.73 Aligned_cols=336 Identities=21% Similarity=0.272 Sum_probs=241.1
Q ss_pred EEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecC--CCee
Q 005635 224 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 301 (686)
Q Consensus 224 ~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~--g~~~ 301 (686)
+|++.|||.||+++++..+..|+. ....||+||+|+|+++|++|+++.++|+....+++++++++|++ ....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999988832 46789999999999999999999999999999999999999964 4577
Q ss_pred EEEeccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchh--hHHHHhhhcccCCCCcEEEEEccccc-CCcceeec
Q 005635 302 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEW 378 (686)
Q Consensus 302 i~VP~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~--~I~e~~~~~~~~~~GT~IiI~nL~r~-~~~~eLDF 378 (686)
.++|+++|+.++..+.. .-...++++|..+|+|... .+.+.. .+.....||.++|.|+++. ++..+++|
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag~~~~a~~~-~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAGDYLLAELD-VIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCcccccchhccccc-ceeccCCceeEEEEehhhhcCCCccccc
Confidence 89999999998876643 1134577889999999873 222221 1222234588888888775 45688888
Q ss_pred cCCCCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccC--ceeeecc
Q 005635 379 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVETG 456 (686)
Q Consensus 379 ~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Prm~I~LnG~~V~~~~i~~~L~--~~~v~~~ 456 (686)
..| +.||++++.- +.++- =+.|+.++|++|.|.|++++..|+.+.+..+-. .+++.+.
T Consensus 147 a~~--------a~aeLldnal---------DEi~~---~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~ 206 (775)
T KOG1845|consen 147 AKG--------AIAELLDNAL---------DEITN---GATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRK 206 (775)
T ss_pred ccC--------hhhhhccccc---------ccccc---ccceEEeeeecccccccceeEEeeccceeccccccCHHHHHH
Confidence 765 4688877531 22232 234599999999999999999999887544321 1221111
Q ss_pred ----------cccceEEEEEEceecccccceeceEEEEEcCceeeeeeeecccccCCCCCccEEEEEecCCccccCCCce
Q 005635 457 ----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLV 526 (686)
Q Consensus 457 ----------~~~~~~V~It~Gf~~~e~~~~~~Gi~vY~nnRLI~~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~ 526 (686)
+...+..+...||.... ...|..+|+-+|. +...+.+..+.||++..+||..
T Consensus 207 ~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~------ 268 (775)
T KOG1845|consen 207 CMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK------ 268 (775)
T ss_pred HHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc------
Confidence 11112334455665532 2388889998887 2234567889999999998754
Q ss_pred ecccCCCCCCCchhHHHHHHHHHHHHHHHHhhccccccccc--ccCCCCCCCceecCccchhhccCCCCCCCCCCCCCce
Q 005635 527 WVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWF 604 (686)
Q Consensus 527 ~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~--~~~~~~~~~~wvQCd~C~KWR~lp~~~~~~~lp~~W~ 604 (686)
|+ |+||...- +|++...+...++|.. +-+.+ ++....+..... .|+||+..+...+ .++..|+
T Consensus 269 --t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~~~---~~L~w~p~~~~~~--~l~q~~v 333 (775)
T KOG1845|consen 269 --TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEVTE---RFLKWSPYSHLLD--LLGQNSV 333 (775)
T ss_pred --cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHHHH---HHhhcCccccHHH--Hhhhhhh
Confidence 78 99999877 8888889999999965 22211 111111211111 8999999998875 6899999
Q ss_pred eccCCC--CCCCCCCcccccCCce
Q 005635 605 CYMKPF--EGLCDLPEQKVDAGVV 626 (686)
Q Consensus 605 C~~n~~--~~~C~~pEe~~~~~~~ 626 (686)
|..+++ +..|.++.......++
T Consensus 334 ~~~~~~~ef~~~~~~~~~~g~~~I 357 (775)
T KOG1845|consen 334 QYSKDFPEFGHQFNIMNKPGTDVI 357 (775)
T ss_pred hhccccchhcchhhhccCCCceee
Confidence 999974 6889999887776655
No 7
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.79 E-value=4.8e-19 Score=205.25 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=126.3
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..|+.+..+.|+....+|+|||+||.||.. ..+.|.+.. ......|+|.|||+||+.+
T Consensus 13 ~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnGiGMt~e 86 (701)
T PTZ00272 13 QLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNGIGMTKA 86 (701)
T ss_pred HHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECCCCCCHH
Confidence 455666888888999999999999999942 245666653 2345789999999999999
Q ss_pred HHHHhhh-cccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccc
Q 005635 238 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 308 (686)
Q Consensus 238 eL~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~ 308 (686)
+|.+.++ ++.|.. ...+...||+|||||+++|| +|++|.|.||+.+. .++.|.+ .+...+.|...+
T Consensus 87 dl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y~i~~~~ 161 (701)
T PTZ00272 87 DLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTFTITSTP 161 (701)
T ss_pred HHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcEEEEeCC
Confidence 9988764 554421 12346799999999999999 99999999998764 5788877 455566664332
Q ss_pred -c-CCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 309 -Y-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 309 -~-~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
. ..+||+|+++++++. ++...+.++. |.+||.|..+||+
T Consensus 162 ~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~ 204 (701)
T PTZ00272 162 ESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIE 204 (701)
T ss_pred CCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceE
Confidence 2 268999999999765 6788888876 9999999999886
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.5e-17 Score=179.48 Aligned_cols=159 Identities=28% Similarity=0.364 Sum_probs=124.9
Q ss_pred hccccCCHHHHHHHHHhcccccC--------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-
Q 005635 180 GQAHSGWIFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 244 (686)
Q Consensus 180 gt~~~~~~~~AIaELIdNS~DA~--------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~- 244 (686)
..+.++.-..+++|||.||.||. ...+.|.|.. +.....|+|.|+|+||+++||.++++
T Consensus 51 i~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLvnnLGT 124 (656)
T KOG0019|consen 51 AKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLVNNLGT 124 (656)
T ss_pred HHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHHhhhhh
Confidence 44555566789999999999993 2466676653 34578999999999999999999886
Q ss_pred ccc--------CCC-CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccccCCCCcE
Q 005635 245 FGH--------KQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQF 315 (686)
Q Consensus 245 fG~--------s~k-~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~ 315 (686)
... ..+ ..++..+|||||+|||+|++ ++++|.|+|++.+.. ++.|.+ .+...+.|...+-..+||.
T Consensus 125 IAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTk 199 (656)
T KOG0019|consen 125 IAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTK 199 (656)
T ss_pred hhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccce
Confidence 222 223 34567899999999999999 999999999998765 666665 4455666665555778999
Q ss_pred EEEEecC-cchhhhhhhhhh-hcccCCCchhhHHHH
Q 005635 316 MELDTVV-QSEATAKYNLKS-IKEFSPFNKYLIGEK 349 (686)
Q Consensus 316 I~l~~~~-~se~~~~~~l~~-I~kySpF~s~~I~e~ 349 (686)
|+++++. +.++..+..++. |.+||.|..+||+-.
T Consensus 200 i~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~ 235 (656)
T KOG0019|consen 200 IVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLN 235 (656)
T ss_pred EEeeehhhhhhhccHhHHHHHHhhccccccccchhh
Confidence 9999987 457888888876 999999999998743
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.5e-17 Score=157.31 Aligned_cols=102 Identities=32% Similarity=0.477 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC-CCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~-~~~~~IG~fGvGf 265 (686)
+..||+|||+||+||.|+.|.|.+... ..+...|.|.|||.||+.++|..++.+|.+.+.. .....+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 378999999999999999999999852 1356899999999999999999988888877631 2367899999999
Q ss_pred eeeecccCCeEEEEEEeCCCCceeEEEE
Q 005635 266 KTGAMRLGKDALVLTQTADSRSIAFLSQ 293 (686)
Q Consensus 266 KsA~~~lg~~v~V~Sk~~g~~s~~~ls~ 293 (686)
|.|.+.+|+.+.|.|++.+......+..
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 9999999999999999998755333333
No 10
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-16 Score=170.35 Aligned_cols=157 Identities=24% Similarity=0.348 Sum_probs=116.4
Q ss_pred ccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 181 QAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 181 t~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
.+.|+.-..+++|||+||.||-. ..++|.|.. ......|.|.|.|.||++++|.+.++
T Consensus 90 NSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~edLi~NLG 163 (785)
T KOG0020|consen 90 NSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTREDLIKNLG 163 (785)
T ss_pred HHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHHHHHhhh
Confidence 34445667899999999999942 355566653 24568899999999999999999876
Q ss_pred -cccCC--------CCCC-----CCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccccC
Q 005635 245 -FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYY 310 (686)
Q Consensus 245 -fG~s~--------k~~~-----~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~ 310 (686)
+..|. .... ....|||||+|||+|++ +++.|.|+|++++.. .++|.+ ....+.|-..+|.
T Consensus 164 TIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD~--QyiWES---dan~FsvseDprg 237 (785)
T KOG0020|consen 164 TIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDDS--QYIWES---DANSFSVSEDPRG 237 (785)
T ss_pred hhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCcc--ceeeec---cCcceeeecCCCC
Confidence 22211 1111 13689999999999998 999999999998752 355554 1235666554443
Q ss_pred ---CCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHHHH
Q 005635 311 ---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 349 (686)
Q Consensus 311 ---~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~e~ 349 (686)
.+||.|+++++++. +++++..++. |.+||.|+++||..+
T Consensus 238 ~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lW 281 (785)
T KOG0020|consen 238 NTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLW 281 (785)
T ss_pred CcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeee
Confidence 58999999999765 6788888876 999999999988743
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.60 E-value=1.4e-16 Score=126.14 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.3
Q ss_pred CceecCccchhhccCCCCCCC--CCCCCCceeccCCC--CCCCCCCccc
Q 005635 576 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 620 (686)
Q Consensus 576 ~~wvQCd~C~KWR~lp~~~~~--~~lp~~W~C~~n~~--~~~C~~pEe~ 620 (686)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ .++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 479999999999999999876 78999999999986 5999999985
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.50 E-value=5.5e-13 Score=154.68 Aligned_cols=108 Identities=23% Similarity=0.391 Sum_probs=85.1
Q ss_pred eeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 005635 168 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 245 (686)
Q Consensus 168 ~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-f 245 (686)
+..+++...+++ +...+..|..+++|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++. .
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 567889999999 44555789999999999999999999999997 46788899999999999999988764 4
Q ss_pred ccCC-CCCCCCCcccccCceeeeeec---ccCCeEEEEEEeCC
Q 005635 246 GHKQ-PDADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTAD 284 (686)
Q Consensus 246 G~s~-k~~~~~~~IG~fGvGfKsA~~---~lg~~v~V~Sk~~g 284 (686)
.+|. ....|...|-.| ||..-++ +-..+++|.|++.+
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~ 117 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAE 117 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCC
Confidence 3332 233455566666 8876443 44589999999654
No 13
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.42 E-value=1.1e-11 Score=143.91 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=97.3
Q ss_pred ceeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhc
Q 005635 167 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 245 (686)
Q Consensus 167 ~~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~f 245 (686)
.+..+++..+.++ +...+..|..+|+|||+||+||||+.|.|.+.. .+...|.|.|||+||+.+++..++..
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~-------~g~~~i~V~DnG~Gi~~~~~~~~~~~ 74 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEE-------GGLKLIRVRDNGCGISKEDLALALAR 74 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEe-------CCeEEEEEEEcCCCCCHHHHHHHhhc
Confidence 4667899999999 555567999999999999999999999999962 34578999999999999999988764
Q ss_pred ccCCCCC--CC---CCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 005635 246 GHKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 319 (686)
Q Consensus 246 G~s~k~~--~~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~ 319 (686)
..+.|-. .+ ....|..|.|+.+.+ .+ .+++|.|++.+.. .+ +...|..|...-.-|. -...||.|++.
T Consensus 75 ~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~~-~~-~~~~~~~G~~~~~~~~--~~~~GT~V~v~ 147 (617)
T PRK00095 75 HATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADAA-EG-WQIVYEGGEIVEVKPA--AHPVGTTIEVR 147 (617)
T ss_pred cCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCCC-ce-EEEEecCCcCcceecc--cCCCCCEEEec
Confidence 4433422 12 245677777764333 34 4899999987542 22 2334545421111111 12479999874
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=1.1e-11 Score=132.44 Aligned_cols=140 Identities=19% Similarity=0.253 Sum_probs=95.7
Q ss_pred ceeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhc
Q 005635 167 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 245 (686)
Q Consensus 167 ~~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~f 245 (686)
-+.++++..++.+ +.+.+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++..
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~ 74 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACER 74 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhC
Confidence 4567899999998 445557899999999999999999999988863 23346999999999999999988753
Q ss_pred ccCCCCC-----CCCCcccccCceeeeeecccCCeEEEEEEe-CCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 005635 246 GHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 319 (686)
Q Consensus 246 G~s~k~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~-~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~ 319 (686)
+.+.|.. ......|..|.|+.+. ..++ +++|.|++ .+. ..++.+. . +|. .+.-....-...||.|++.
T Consensus 75 ~~tsk~~~~~~~~~~~~~G~rG~al~si-~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 75 HATSKIQSFEDLERIETLGFRGEALASI-SSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CCcCCCCChhHhhcccccCccchHHHHH-HhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 3333321 2345789999998433 3355 89999998 443 2333332 2 232 1111112233589998874
No 15
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.21 E-value=3.6e-11 Score=139.67 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=124.3
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++|+.+| +|+.+.. ...+...+.||||||+|+ .|+.|.|.+.. ...|+|.|||.||+
T Consensus 14 ~~L~~lE~VrkRP~mYiGs~~---~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP 81 (631)
T PRK05559 14 EVLEGLEPVRKRPGMYIGSTD---TRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIP 81 (631)
T ss_pred eeccchHHHhcCCCceeCCCC---CchhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCC
Confidence 4577789999999 8986543 356899999999999998 79999999873 24899999999999
Q ss_pred HHHHHH--------hhh-cccCCC--CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQDVVR--------MTY-FGHKQP--DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~eL~~--------~l~-fG~s~k--~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+.... +|. +..+.+ ........|..|+|.+++.. ++..+.|.|++++. .+.++|..|...-.+
T Consensus 82 ~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNa-lS~~l~V~s~r~g~----~~~~~f~~G~~~~~l 156 (631)
T PRK05559 82 VGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNA-LSSRLEVEVKRDGK----VYRQRFEGGDPVGPL 156 (631)
T ss_pred cccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhh-heeeEEEEEEeCCe----EEEEEEECCcCccCc
Confidence 988776 443 122222 22234678999999965555 99999999998764 256666554321111
Q ss_pred ec-ccc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 305 PI-VSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 305 P~-~~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
+. ... ..+||.|++.++.+ |++-..|....|.+.+..+.....|..|.+.+.+
T Consensus 157 ~~~~~~~~~~~GT~V~f~PD~~-----------iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~ 212 (631)
T PRK05559 157 EVVGTAGKRKTGTRVRFWPDPK-----------IFDSPKFSPERLKERLRSKAFLLPGLTITLNDER 212 (631)
T ss_pred cccccccCCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 21 111 45899999977532 2222234444455666666666889999998764
No 16
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.19 E-value=4e-11 Score=139.01 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=122.9
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccc---c-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~D---A-~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+-+ +..++.||||||+| | +|+.|.|.|.. ...|+|.|||.||+
T Consensus 10 ~~L~gle~VRkRPgMYigs~~------~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp 74 (625)
T TIGR01055 10 EVLDGLEPVRKRPGMYTDTTR------PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMP 74 (625)
T ss_pred eeecccHHhhcCCCCeeCCCC------cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccC
Confidence 4567789999999 9995433 45699999999999 8 69999999872 27899999999999
Q ss_pred HHH--------HHHhhh-c--ccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQD--------VVRMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~e--------L~~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.++ +.-+|+ . |.+........+.|..|+|+++... |++.+.|.|++++.. +.++|..|.....+
T Consensus 75 ~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vna-lS~~l~v~~~r~g~~----~~~~~~~G~~~~~~ 149 (625)
T TIGR01055 75 VDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNA-LSKRVKIKVYRQGKL----YSIAFENGAKVTDL 149 (625)
T ss_pred cccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHH-hcCeEEEEEEECCeE----EEEEEECCeEcccc
Confidence 887 655553 2 2222222234678999999955554 999999999988752 66667555321122
Q ss_pred ec-ccc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 305 PI-VSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 305 P~-~~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
+. .+. ...||.|++.++.+ +++-..|....|.+.++.+.....|..|.+.+.+
T Consensus 150 ~~i~~~~~~~~GT~V~F~PD~~-----------~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der 205 (625)
T TIGR01055 150 ISAGTCGKRLTGTSVHFTPDPE-----------IFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV 205 (625)
T ss_pred ccccccCCCCCCeEEEEEECHH-----------HCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC
Confidence 21 122 34799999876532 3333334444566666666666889999998764
No 17
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.17 E-value=1.1e-10 Score=137.21 Aligned_cols=181 Identities=17% Similarity=0.187 Sum_probs=123.9
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~D---A~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+.+.. ..+...+.||||||+| || |+.|.|.|+. ...|+|.|||.||+
T Consensus 13 ~vL~gle~VRkRPgMYIGst~~~--~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIP 81 (756)
T PRK14939 13 KVLKGLDAVRKRPGMYIGDTDDG--TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIP 81 (756)
T ss_pred eEecccHHHhcCCCCeeCCCCCC--cchhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCccc
Confidence 4567789999999 899765442 3577899999999999 88 9999999872 24899999999999
Q ss_pred HH----------HHHHh-hhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQ----------DVVRM-TYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~----------eL~~~-l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+ |+.-. +.-|.+.......-+-|..|+|.+.+.. +++.+.|.|++++. .+.++|..|...-.+
T Consensus 82 vd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNA-lS~~l~v~v~r~gk----~~~q~f~~G~~~~~l 156 (756)
T PRK14939 82 TDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNA-LSEWLELTIRRDGK----IHEQEFEHGVPVAPL 156 (756)
T ss_pred CCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeeh-ccCeEEEEEEeCCe----EEEEEEecCccccCc
Confidence 87 32211 1112222222223477999999965554 99999999998775 366777655322111
Q ss_pred e-ccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 305 P-IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 305 P-~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
+ +......||.|++.++.. |++-..|....|.+.+..+.....|..|.+.+.+
T Consensus 157 ~~~g~~~~~GT~V~F~PD~~-----------iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 157 KVVGETDKTGTEVRFWPSPE-----------IFENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred cccCCcCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 1 222245899999977543 3332334444556666666667899999998775
No 18
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.11 E-value=3.5e-10 Score=123.61 Aligned_cols=135 Identities=22% Similarity=0.249 Sum_probs=99.4
Q ss_pred cCCHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCc
Q 005635 184 SGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNR 257 (686)
Q Consensus 184 ~~~~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~ 257 (686)
+.++.+.|.|||+||+||.. ..|.|.|+.+ +.+...+.|+|||.||+.+.+.++|+ +-++.+-....++
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Qs 108 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQS 108 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhc
Confidence 35788999999999999953 6788888753 45678899999999999999999985 3333332235788
Q ss_pred ccccCceeeeee----cccCCeEEEEEEeCCCCceeEEEEEec-CCCeeEEEeccccC----CCCcEEEEEecCc
Q 005635 258 IGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYY----RKGQFMELDTVVQ 323 (686)
Q Consensus 258 IG~fGvGfKsA~----~~lg~~v~V~Sk~~g~~s~~~ls~sf~-~g~~~i~VP~~~~~----~~Gt~I~l~~~~~ 323 (686)
.||+|+|.+.|. |..|+.+.|+|.+.++.....++-... ..++..++....++ .+||.|+++++..
T Consensus 109 RGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 109 RGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred cccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 999999997654 467999999999998766655554433 23444444432222 3799999988754
No 19
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.11 E-value=2.2e-10 Score=133.28 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=121.1
Q ss_pred ccCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCC
Q 005635 160 QAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGM 234 (686)
Q Consensus 160 ~~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~D---A~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GM 234 (686)
...+.+.++|+.+| +|+.+... ..+...+.|||+||+| || |+.|.|.|+. ...|+|.|||.||
T Consensus 13 i~~L~~lE~Vr~RPgMYiGs~~~---~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GI 80 (638)
T PRK05644 13 IQVLEGLEAVRKRPGMYIGSTGE---RGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGI 80 (638)
T ss_pred CeEecchHHHhcCCCceECCCCh---hhHHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccc
Confidence 45677789999999 89975432 3577899999999999 88 9999999872 2389999999999
Q ss_pred CHHHHH--------Hhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEE
Q 005635 235 THQDVV--------RMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 303 (686)
Q Consensus 235 t~~eL~--------~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~ 303 (686)
+.+.-. .+|+ -|.+........+.|..|+|.++... ++..++|.|++++. .+.+.|..|...-.
T Consensus 81 p~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vna-lS~~~~v~t~r~g~----~~~~~~~~G~~~~~ 155 (638)
T PRK05644 81 PVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNA-LSTWLEVEVKRDGK----IYYQEYERGVPVTP 155 (638)
T ss_pred cCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhh-eeceEEEEEEeCCc----EEEEEEECCeEccC
Confidence 986221 1222 12222222234578999999965555 99999999998775 34566655432111
Q ss_pred Ee-ccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 304 IP-IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 304 VP-~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
++ .......||.|++.++.. +++-..|....|.+.+..+.....|..|.+++.+
T Consensus 156 ~~~~~~~~~~GT~I~F~Pd~~-----------~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 210 (638)
T PRK05644 156 LEVIGETDETGTTVTFKPDPE-----------IFETTEFDYDTLATRLRELAFLNKGLKITLTDER 210 (638)
T ss_pred ccccCCcCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 11 112245799999866532 2222233334455566666666789999998764
No 20
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.06 E-value=3.6e-10 Score=132.05 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=120.4
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~D---A~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++|+.+| +|+.+.+. ..+...+.|||+||+| || |+.|.|.|+. ...|+|.|||.||+
T Consensus 7 ~~L~~lE~vr~RP~mYiGs~~~---~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp 74 (654)
T TIGR01059 7 KVLEGLEAVRKRPGMYIGSTGE---TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIP 74 (654)
T ss_pred eEecchHHHhcCCCceeCCCCc---chHHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcC
Confidence 4567789999999 88976543 3577899999999999 88 9999999872 23599999999999
Q ss_pred HHHH--------HHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQDV--------VRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~eL--------~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+.- ..++. -|.+..........|..|+|+++... +++.++|.|++++.. +.++|..|...-.+
T Consensus 75 ~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~ina-lS~~l~v~~~~~g~~----~~~~~~~G~~~~~l 149 (654)
T TIGR01059 75 VDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNA-LSEWLEVTVFRDGKI----YRQEFERGIPLGPL 149 (654)
T ss_pred ccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHH-hcCeEEEEEEECCeE----EEEEEeCCCcccCc
Confidence 7521 11222 12222222234678999999965554 999999999987652 55666555321111
Q ss_pred e-ccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 305 P-IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 305 P-~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
. ...-...||.|++.+++. ++.-..|....|.+.+..+.....|..|.+++.+
T Consensus 150 ~~~~~~~~~GT~V~F~pdp~-----------~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 203 (654)
T TIGR01059 150 EVVGETKKTGTTVRFWPDPE-----------IFETTEFDFDILAKRLRELAFLNSGVKISLEDER 203 (654)
T ss_pred eeccCCCCCCcEEEEEEChH-----------HhCCcccCHHHHHHHHHHhhccCCCeEEEEEeec
Confidence 0 112335799999877643 2221223334456666666667889999998764
No 21
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=3.6e-10 Score=128.18 Aligned_cols=182 Identities=19% Similarity=0.191 Sum_probs=132.1
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+.+.. ..+...+.|.||||+|. .|+.|.|.+.. ...|+|.|||.||+
T Consensus 12 ~vL~GLEaVRkRPGMYIGst~~~--~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIP 80 (635)
T COG0187 12 QVLEGLEAVRKRPGMYIGSTGDG--RGLHHLVWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIP 80 (635)
T ss_pred eeccCcHHhhcCCCceeccCCCC--CcceeeEeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCc
Confidence 5677889999999 999877553 35778999999999997 47899998863 57999999999999
Q ss_pred HHH--------HHHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee--E
Q 005635 236 HQD--------VVRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN--L 302 (686)
Q Consensus 236 ~~e--------L~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~--i 302 (686)
-+- +.-+|+ -|.+.....-.-+-|..|+|. ++.-.|+..+.|.+++++. .+.+.|..|... +
T Consensus 81 vdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l 155 (635)
T COG0187 81 VDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPL 155 (635)
T ss_pred cccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCc
Confidence 765 222232 133322222244668999999 5555599999999999875 667778665432 2
Q ss_pred E-EeccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 303 E-IPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 303 ~-VP~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
. +-.+.....||.|.+.++++ |+.-..|....|...++.+.....|..|.+.+.+.
T Consensus 156 ~~ig~~~~~~~GT~V~F~PD~~-----------iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 156 EVIGSTDTKKTGTKVRFKPDPE-----------IFGETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred eecccCCCCCCccEEEEEcChH-----------hcCCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 2 11133445799999988755 55446677777777788888889999999987754
No 22
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=98.97 E-value=1.2e-09 Score=126.90 Aligned_cols=179 Identities=18% Similarity=0.166 Sum_probs=121.4
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+.+. ..+...+.|+||||+|. .++.|.|.|.. ...++|.|||.||+
T Consensus 11 ~~L~glE~VRkRPgMYIGst~~---~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIP 78 (637)
T TIGR01058 11 KILEGLDAVRKRPGMYIGSTDS---KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIP 78 (637)
T ss_pred eeecccHHHhcCCCCeECCCCc---chhheehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCccc
Confidence 4567789999999 89975433 34677899999999994 57899998862 35899999999998
Q ss_pred HHHHH-------H-hhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCC-Ce--e
Q 005635 236 HQDVV-------R-MTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--N 301 (686)
Q Consensus 236 ~~eL~-------~-~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g-~~--~ 301 (686)
.+--. + .|+ -|.+.......-+-|..|+|.+.+.. |+..+.|.++++|. .+.++|..| .. .
T Consensus 79 v~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNA-lS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~ 153 (637)
T TIGR01058 79 TGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNA-LSSWLEVTVKRDGQ----IYQQRFENGGKIVQS 153 (637)
T ss_pred CcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccce-eeceEEEEEEECCE----EEEEEEecCCcCcCC
Confidence 64211 1 121 12222222234567999999955554 99999999998775 566777654 21 1
Q ss_pred EEEeccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 302 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 302 i~VP~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
..+. .....+||.|.+.++.+ |+.-..|....|...+..+.....|.+|.+.+-+
T Consensus 154 l~~~-~~~~~~GT~V~F~PD~~-----------iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der 208 (637)
T TIGR01058 154 LKKI-GTTKKTGTLVHFHPDPT-----------IFKTTQFNSNIIKERLKESAFLLKKLKLTFTDKR 208 (637)
T ss_pred cccc-cCCCCCceEEEEEeCHH-----------HcCCCccCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 1111 12245899999988654 3433345555566666677777899999998753
No 23
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.91 E-value=3.3e-09 Score=118.54 Aligned_cols=140 Identities=21% Similarity=0.351 Sum_probs=104.6
Q ss_pred ceeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh-h
Q 005635 167 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 244 (686)
Q Consensus 167 ~~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l-~ 244 (686)
.+-+++...+.++ +...+..|..||+|||.||+||++|.|.|.+. .+|-..|.|.|||.||-++||.-+. +
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 5678999999998 44455789999999999999999999999886 4677889999999999999997754 6
Q ss_pred cccCCC-CCCCCCcccccCceeee---eecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEE
Q 005635 245 FGHKQP-DADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 318 (686)
Q Consensus 245 fG~s~k-~~~~~~~IG~fGvGfKs---A~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l 318 (686)
|.+|.- ..++...+-.| ||.. |+++-..+|+|.||+.+..+. +-.+|.+|.-. .-|.+.--.+||.|++
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca--yrasY~DGkm~-~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA--YRASYRDGKMI-ATPKPCAGKQGTIITV 152 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee--eEEEeeccccc-cCCCCccCCCceEEEe
Confidence 776643 33567777777 6764 556678999999999887543 33444444311 1244445567998875
No 24
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.85 E-value=4.6e-09 Score=119.73 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=76.6
Q ss_pred ecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHh-hhccc
Q 005635 170 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFGH 247 (686)
Q Consensus 170 ~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~-l~fG~ 247 (686)
++++.-.|++ +.+.+.++..|++|||+||+||||+.|+|.++. .|...|.|.|||+|++..+..-+ +...+
T Consensus 3 ~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kd-------yG~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 3 QIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKD-------YGSDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred CCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCC-------CCcceEEEecCCCCCCccchhhhhhhhhh
Confidence 4677788888 555567899999999999999999999999873 46789999999999999887663 22222
Q ss_pred CCCCCCCCCcccccCceeeeeec-ccC--CeEEEEEEeC
Q 005635 248 KQPDADDPNRIGRFGVGFKTGAM-RLG--KDALVLTQTA 283 (686)
Q Consensus 248 s~k~~~~~~~IG~fGvGfKsA~~-~lg--~~v~V~Sk~~ 283 (686)
+ |-..-.+....+-.||..-++ +|| .+++|.|++.
T Consensus 76 S-Ki~~f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~ 113 (672)
T KOG1978|consen 76 S-KIVSFADLAVLFTLGFRGEALSSLCALGDVMISTRSH 113 (672)
T ss_pred h-cccchhhhhhhhhhhhHHHHHHhhhhccceEEEEeec
Confidence 2 211122333444558876544 243 7888899886
No 25
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.81 E-value=1.5e-08 Score=117.50 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=100.1
Q ss_pred HHHHHHhcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCCCCCC
Q 005635 190 AIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADD 254 (686)
Q Consensus 190 AIaELIdNS~DA~----At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~--------~l~---fG~s~k~~~~ 254 (686)
.+.||||||+||+ |+.|+|.|+. ...|+|.|||.||+.+.... ++. -|.+......
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---------DNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---------CCeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCc
Confidence 5789999999997 9999999873 23899999999999644221 122 1222222223
Q ss_pred CCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecC-CCe--eEEEeccccCCCCcEEEEEecCcchhhhhhh
Q 005635 255 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GKD--NLEIPIVSYYRKGQFMELDTVVQSEATAKYN 331 (686)
Q Consensus 255 ~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~-g~~--~i~VP~~~~~~~Gt~I~l~~~~~se~~~~~~ 331 (686)
....|..|+|++++.. ++..++|.|++++.. +.+.|.. |.. ...+ ...-...||.|++.++..
T Consensus 76 k~s~G~~G~Gls~vna-lS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~-~~~~~~~GT~V~F~Pd~~-------- 141 (594)
T smart00433 76 KVSGGLHGVGASVVNA-LSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKI-IGDTKKDGTKVTFKPDLE-------- 141 (594)
T ss_pred cccCCcccchHHHHHH-hcCceEEEEEeCCcE----EEEEEeCCCeECcccee-cCCCCCCCcEEEEEECHH--------
Confidence 4578999999955544 999999999998752 5566644 321 1111 112235799999866432
Q ss_pred hhhhcccC-CCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 332 LKSIKEFS-PFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 332 l~~I~kyS-pF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
++.-+ .|....|.+.+..+.....|..|.+.+.+
T Consensus 142 ---~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~der 176 (594)
T smart00433 142 ---IFGMTTDDDFELLKRRLRELAFLNKGVKITLNDER 176 (594)
T ss_pred ---HhCCcccchHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 22112 34444566666666666889999998875
No 26
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=98.78 E-value=9.5e-09 Score=118.89 Aligned_cols=181 Identities=16% Similarity=0.156 Sum_probs=118.4
Q ss_pred cCCCCcceeecCh-HHHHHhhcc--------------ccCCHHHHHHHHHhccccc------C-CCccEEEEEeceeccC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQA--------------HSGWIFGAIAELVDNSRDA------K-ATKLEISIESIYFKKA 218 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~--------------~~~~~~~AIaELIdNS~DA------~-At~I~I~i~~~~~~~~ 218 (686)
..+.+++||+.+| +||.+.+.. +...+...+.|+||||+|. + ++.|+|.++
T Consensus 5 ~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~------- 77 (602)
T PHA02569 5 KVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK------- 77 (602)
T ss_pred eEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-------
Confidence 4567789999988 899877541 1134566789999999996 2 677777764
Q ss_pred CCCcCEEEEEeCCCCCCHHHHHH----------h-hh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCC
Q 005635 219 GKDIPMLSIIDDGHGMTHQDVVR----------M-TY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 284 (686)
Q Consensus 219 ~~~~~~L~I~DNG~GMt~~eL~~----------~-l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g 284 (686)
...++|.|||.||+-+--.. + |+ -|.+. .......-|..|+|.+.+.. |+..+.|.++..+
T Consensus 78 ---dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF-d~~ykvSGGlhGVG~svvNa-LS~~~~V~v~~~~ 152 (602)
T PHA02569 78 ---NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF-DDTNRVTGGMNGVGSSLTNF-FSVLFIGETCDGK 152 (602)
T ss_pred ---CCEEEEEECCCcccCCcccccccccccceEEEEEeecccccc-CCcceeeCCcCCccceeeec-cchhhheEEEcCC
Confidence 36899999999998643211 0 11 12222 11234567999999965555 9999999886554
Q ss_pred CCceeEEEEEecCCCeeEEEeccccCCCCcEEEEEecCcchhhhhhhhhhhcc---cCCCchhhHHHHhhhcccCCCCcE
Q 005635 285 SRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKE---FSPFNKYLIGEKAGLFQDKCTGTQ 361 (686)
Q Consensus 285 ~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~k---ySpF~s~~I~e~~~~~~~~~~GT~ 361 (686)
. .+.++|..|.....++...-..+||.|++.++.+ |+. ++.+....|...+..++..+.|.+
T Consensus 153 ~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD~~-----------iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~ 217 (602)
T PHA02569 153 N----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPDFS-----------HFEVNGLDQQYLDIILDRLQTLAVVFPDIK 217 (602)
T ss_pred E----EEEEEecCCcccCCcccCCCCCCccEEEEEECHH-----------HhCCCccCccHHHHHHHHHHHHhcCCCCCE
Confidence 3 3677776654332223333345899999988654 222 222223445555566666789999
Q ss_pred EEEEccc
Q 005635 362 IYIWNLD 368 (686)
Q Consensus 362 IiI~nL~ 368 (686)
|.+.+.+
T Consensus 218 I~l~der 224 (602)
T PHA02569 218 FTFNGKK 224 (602)
T ss_pred EEEEecC
Confidence 9998764
No 27
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.76 E-value=7.9e-08 Score=108.40 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcc
Q 005635 185 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 258 (686)
Q Consensus 185 ~~~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~I 258 (686)
..+..++.|||+||+||.++ .|.|.+... ..+...|.|.|||.||+++++..++. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 35779999999999999865 566666521 11234799999999999999999875 44444432235567
Q ss_pred cccCceeeeeec----ccCCeEEEEEEeCCCCceeEEEEEec--CCCeeEEEec-cccC-CCCcEEEEEecCcchhhhhh
Q 005635 259 GRFGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLN--QGKDNLEIPI-VSYY-RKGQFMELDTVVQSEATAKY 330 (686)
Q Consensus 259 G~fGvGfKsA~~----~lg~~v~V~Sk~~g~~s~~~ls~sf~--~g~~~i~VP~-~~~~-~~Gt~I~l~~~~~se~~~~~ 330 (686)
|.+|+|+.++.+ ..|..+.|.|+..+......+..... .....+.-.. .... .+||.|++...... .
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~f~~~~-----~ 176 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELEFKGVS-----Y 176 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEEECCce-----e
Confidence 999999965543 23556999999886532222222221 1111221111 1111 26999988653211 0
Q ss_pred hhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcc
Q 005635 331 NLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNL 367 (686)
Q Consensus 331 ~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL 367 (686)
. +....|.+.++.+...+.|.+|.+.+-
T Consensus 177 r---------~~k~~i~e~l~~~Al~nP~~~i~l~~~ 204 (488)
T TIGR01052 177 R---------RSKQGVYEYLRRTAVANPHAKIVLVDP 204 (488)
T ss_pred e---------ccHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 0 001234445555555567888887753
No 28
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.76 E-value=8.2e-08 Score=109.34 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccc
Q 005635 187 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 260 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~ 260 (686)
+..+|.|||+||+||.+. .|.|.+... ....+...|.|.|||.||+++++..+|. |..+.+........|.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 689999999999999765 466666521 0012346799999999999999999874 4333332111456799
Q ss_pred cCceeeeeec----ccCCeEEEEEEeCCC
Q 005635 261 FGVGFKTGAM----RLGKDALVLTQTADS 285 (686)
Q Consensus 261 fGvGfKsA~~----~lg~~v~V~Sk~~g~ 285 (686)
+|+|+..+.+ ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999966543 235678999987654
No 29
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=98.72 E-value=1.2e-08 Score=120.55 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=122.7
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+.+ ...+...+.|+||||+|. .++.|.|.|.. ...++|.|||.||+
T Consensus 106 ~vLeGLEaVRkRPGMYIGst~---~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIP 173 (903)
T PTZ00109 106 VVLEGLEAVRKRPGMYIGNTD---EKGLHQLLFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIP 173 (903)
T ss_pred eehhccHHHhcCCCceeCCCC---CCcceEEEEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCcccc
Confidence 4577789999999 8996543 345677899999999996 36889988862 46899999999998
Q ss_pred HHHHH--------Hhhh-------cccCC-------------------C---------------C--CCCCCcccccCce
Q 005635 236 HQDVV--------RMTY-------FGHKQ-------------------P---------------D--ADDPNRIGRFGVG 264 (686)
Q Consensus 236 ~~eL~--------~~l~-------fG~s~-------------------k---------------~--~~~~~~IG~fGvG 264 (686)
-+.-. -+|+ |+... + . ..-..+-|..|||
T Consensus 174 vd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG 253 (903)
T PTZ00109 174 CDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVG 253 (903)
T ss_pred ccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcc
Confidence 74321 1111 22210 0 0 0013467999999
Q ss_pred eeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEec--cccCCCCcEEEEEec-Ccchhh-hhh--hhhhhccc
Q 005635 265 FKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI--VSYYRKGQFMELDTV-VQSEAT-AKY--NLKSIKEF 338 (686)
Q Consensus 265 fKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~--~~~~~~Gt~I~l~~~-~~se~~-~~~--~l~~I~ky 338 (686)
.+.+. .|+..+.|.++++|. .+.++|..|...-.+.+ .+-..+||.|.+.++ ++.... ... .-+.--.-
T Consensus 254 ~SVVN-ALS~~l~VeV~RdGK----~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~ 328 (903)
T PTZ00109 254 LSVVN-ALSSFLKVDVFKGGK----IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCK 328 (903)
T ss_pred eeeee-eccCeEEEEEEECCE----EEEEEeCCCcccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccc
Confidence 95444 599999999999876 67788876632111111 111357999999886 431100 000 00000001
Q ss_pred CCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 339 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 339 SpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
+.|....|...+..++....|.+|.+.+.+.
T Consensus 329 ~~F~~d~L~~RLrElAfLNpGL~I~L~DeR~ 359 (903)
T PTZ00109 329 NGFNLDLIKNRIHELSYLNPGLTFYLVDERI 359 (903)
T ss_pred cccCHHHHHHHHHHHhccCCCcEEEEEecCc
Confidence 2256566677777777788999999998763
No 30
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=98.66 E-value=5.4e-08 Score=120.12 Aligned_cols=186 Identities=15% Similarity=0.209 Sum_probs=122.4
Q ss_pred eccCCCCcceeecCh-HHHHHhhcc--------------------ccCCHHHHHHHHHhcccccC--------CCccEEE
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQA--------------------HSGWIFGAIAELVDNSRDAK--------ATKLEIS 209 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~--------------------~~~~~~~AIaELIdNS~DA~--------At~I~I~ 209 (686)
.+..+.+.+||+++| +||.+.+.. +...+.-.+-|+|+||+|.. ++.|.|.
T Consensus 9 ~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~ 88 (1388)
T PTZ00108 9 RYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVT 88 (1388)
T ss_pred hhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEE
Confidence 467788899999999 899887552 11357789999999999952 4788888
Q ss_pred EEeceeccCCCCcCEEEEEeCCCCCCHHHHHH--h----hhcc-----cCCCCCCCCCcccccCceeeeeecccCCeEEE
Q 005635 210 IESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFG-----HKQPDADDPNRIGRFGVGFKTGAMRLGKDALV 278 (686)
Q Consensus 210 i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~--~----l~fG-----~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V 278 (686)
|+. +...|+|.|||.||+-+--.. + +-|| .+.........-|+.|+|.+.+.+ |+..+.|
T Consensus 89 i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNa-lS~~f~V 159 (1388)
T PTZ00108 89 IDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNI-FSTKFTV 159 (1388)
T ss_pred Eec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCcccccc-ccceEEE
Confidence 863 236899999999998643111 0 1122 222222235578999999966665 9999999
Q ss_pred EEEeC--CCCceeEEEEEecCCCeeEEEecc-cc-C-CCCcEEEEEecCcchhhhhhhhhhhcccCCCchhh---HHHHh
Q 005635 279 LTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKA 350 (686)
Q Consensus 279 ~Sk~~--g~~s~~~ls~sf~~g~~~i~VP~~-~~-~-~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~---I~e~~ 350 (686)
.+.++ +. .+.++|..|-....-|.. +. . .+||.|++.++.+ |+.-..|.... |...+
T Consensus 160 ev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD~~-----------iF~~~~fd~d~~~ll~~Rl 224 (1388)
T PTZ00108 160 ECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPDYA-----------KFGMTEFDDDMLRLLKKRV 224 (1388)
T ss_pred EEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeCHH-----------HcCCCccChHHHHHHHHHH
Confidence 99988 54 566777655222222321 22 2 5899999988644 22222233222 44444
Q ss_pred hhcccCCCCcEEEEEccc
Q 005635 351 GLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 351 ~~~~~~~~GT~IiI~nL~ 368 (686)
..++....|.+|.+.+.+
T Consensus 225 ~dlA~ln~GLkI~lnder 242 (1388)
T PTZ00108 225 YDLAGCFGKLKVYLNGER 242 (1388)
T ss_pred HHHhcCCCCcEEEEeCcc
Confidence 555566789999998764
No 31
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.62 E-value=1.6e-07 Score=109.49 Aligned_cols=129 Identities=20% Similarity=0.306 Sum_probs=84.4
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 005635 186 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 259 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG 259 (686)
++..+|.|||+||+||.+. .|.|.+.. .+....|.|.|||.||+++++..+|. |.+..+-.......|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4779999999999999765 46666652 22335799999999999999999985 544333211235678
Q ss_pred ccCceeeeeec----ccCCeEEEEEEeCCCCceeEEEEEecCCC-e-eEE-EeccccC-CCCcEEEEEe
Q 005635 260 RFGVGFKTGAM----RLGKDALVLTQTADSRSIAFLSQSLNQGK-D-NLE-IPIVSYY-RKGQFMELDT 320 (686)
Q Consensus 260 ~fGvGfKsA~~----~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~-~-~i~-VP~~~~~-~~Gt~I~l~~ 320 (686)
+.|+|+.++.. .-|..+.|.|+..+......+......+. . .+. .....|. .+||.|++.+
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~L 188 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEM 188 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEE
Confidence 99999865542 34778999999876543322333333332 1 221 1122344 4799998875
No 32
>PLN03237 DNA topoisomerase 2; Provisional
Probab=98.60 E-value=1.1e-07 Score=117.09 Aligned_cols=189 Identities=11% Similarity=0.139 Sum_probs=119.0
Q ss_pred eeccCCCCcceeecCh-HHHHHhhc------------------cccCCHHHHHHHHHhcccccC-----CCccEEEEEec
Q 005635 158 VKQAGPLEKNFVRADP-SYLQTLGQ------------------AHSGWIFGAIAELVDNSRDAK-----ATKLEISIESI 213 (686)
Q Consensus 158 ~~~~~~~~~~~v~l~p-~~L~~lgt------------------~~~~~~~~AIaELIdNS~DA~-----At~I~I~i~~~ 213 (686)
.+++.+.+.+||+.+| +||.+... ++...+.-.+-|+|+||.|.. ++.|.|.|+.
T Consensus 30 ~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~- 108 (1465)
T PLN03237 30 EMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDV- 108 (1465)
T ss_pred HhhhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc-
Confidence 3677888899999999 89988763 112456789999999999963 4788888862
Q ss_pred eeccCCCCcCEEEEEeCCCCCCHHHHH-------H-hhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEe
Q 005635 214 YFKKAGKDIPMLSIIDDGHGMTHQDVV-------R-MTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQT 282 (686)
Q Consensus 214 ~~~~~~~~~~~L~I~DNG~GMt~~eL~-------~-~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~ 282 (686)
....|+|.|||.||+-+--. . +|+ -|.+.........-|+.|+|.+.+.+ |+..+.|.++.
T Consensus 109 -------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNa-LS~~f~Vev~D 180 (1465)
T PLN03237 109 -------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNI-FSTEFVIETAD 180 (1465)
T ss_pred -------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCcccccc-ccCeeEEEEEE
Confidence 25789999999999865211 1 111 12222222234577999999966665 99999999983
Q ss_pred CCCCceeEEEEEecCCCeeEEEecc-c--cCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhh---cc-c
Q 005635 283 ADSRSIAFLSQSLNQGKDNLEIPIV-S--YYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGL---FQ-D 355 (686)
Q Consensus 283 ~g~~s~~~ls~sf~~g~~~i~VP~~-~--~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~---~~-~ 355 (686)
... .-.+.++|..+-....-|.. . -..+||.|++.++.+ |+.-.-|....|..+.+. +. .
T Consensus 181 g~~--gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~e-----------iF~~~~fd~D~l~~~~rRlrdLAa~ 247 (1465)
T PLN03237 181 GKR--QKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLA-----------KFNMTHLEDDVVALMKKRVVDIAGC 247 (1465)
T ss_pred CCC--CeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECHH-----------HhCCceEcHHHHHHHHHHHHHHHhc
Confidence 211 12566777542111111211 1 125899999988644 222222333333322222 22 4
Q ss_pred CCCCcEEEEEccc
Q 005635 356 KCTGTQIYIWNLD 368 (686)
Q Consensus 356 ~~~GT~IiI~nL~ 368 (686)
.+.|.+|.+.+.+
T Consensus 248 LnkGlkI~LndeR 260 (1465)
T PLN03237 248 LGKTVKVELNGKR 260 (1465)
T ss_pred cCCCcEEEEEecC
Confidence 5789999998875
No 33
>PLN03128 DNA topoisomerase 2; Provisional
Probab=98.60 E-value=9.8e-08 Score=116.68 Aligned_cols=186 Identities=12% Similarity=0.144 Sum_probs=118.8
Q ss_pred eccCCCCcceeecCh-HHHHHhhcc------------------ccCCHHHHHHHHHhcccccC-----CCccEEEEEece
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQA------------------HSGWIFGAIAELVDNSRDAK-----ATKLEISIESIY 214 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~------------------~~~~~~~AIaELIdNS~DA~-----At~I~I~i~~~~ 214 (686)
.++...+.+||+.+| +||.+.... +...+...+-|+|+||.|.. ++.|.|.|+.
T Consensus 6 ~yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~~~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~-- 83 (1135)
T PLN03128 6 TYQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEGGEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDV-- 83 (1135)
T ss_pred hhhhhcchhHHhcCCCCeeCCCCCccceeeEecccceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--
Confidence 456677889999999 899877542 22357789999999999963 3788888863
Q ss_pred eccCCCCcCEEEEEeCCCCCCHHHHHH--------hhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEE--
Q 005635 215 FKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQ-- 281 (686)
Q Consensus 215 ~~~~~~~~~~L~I~DNG~GMt~~eL~~--------~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk-- 281 (686)
+...|+|.|||.||+-+--.. +|+ -|.+........+-|+.|+|.+.+.. |+..+.|.+.
T Consensus 84 ------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNa-LS~~f~Vev~d~ 156 (1135)
T PLN03128 84 ------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANI-FSTEFTVETADG 156 (1135)
T ss_pred ------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEe-ecCeEEEEEEEC
Confidence 247899999999998752111 111 12222222234578999999966665 9999999998
Q ss_pred eCCCCceeEEEEEecCCCeeEEEecc-cc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchh---hHHHHhhhcc-
Q 005635 282 TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY---LIGEKAGLFQ- 354 (686)
Q Consensus 282 ~~g~~s~~~ls~sf~~g~~~i~VP~~-~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~---~I~e~~~~~~- 354 (686)
++|. .+.++|..|......|.. +. ..+||.|++.++.+ |+.-..|... .+...+..+.
T Consensus 157 r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD~~-----------iF~~~~fd~d~~~~l~kRl~elAa 221 (1135)
T PLN03128 157 NRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPDLA-----------KFNMTRLDEDVVALMSKRVYDIAG 221 (1135)
T ss_pred CCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEECHH-----------HcCCCccChHHHHHHHHHHHHHHH
Confidence 5443 566777665322222321 22 24899999988643 2222223322 1222222222
Q ss_pred cCCCCcEEEEEccc
Q 005635 355 DKCTGTQIYIWNLD 368 (686)
Q Consensus 355 ~~~~GT~IiI~nL~ 368 (686)
..+.|.+|.+.+.+
T Consensus 222 ~Ln~GlkI~Lnder 235 (1135)
T PLN03128 222 CLGKKLKVELNGKK 235 (1135)
T ss_pred hCCCCcEEEEecCC
Confidence 45789999999875
No 34
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.22 E-value=4.1e-06 Score=97.47 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccc
Q 005635 187 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 260 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~ 260 (686)
+..++.|||+||+||.+. .|.|.+... +.+...|.|.|||.||+++++..++. |....+-.......|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 448899999999999875 577766531 12234699999999999999999885 3333332112356788
Q ss_pred cCceeeeee----cccCCeEEEEEEeCCC
Q 005635 261 FGVGFKTGA----MRLGKDALVLTQTADS 285 (686)
Q Consensus 261 fGvGfKsA~----~~lg~~v~V~Sk~~g~ 285 (686)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999986554 2347778999987544
No 35
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.15 E-value=1.3e-06 Score=78.35 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|.||++||+++... .|.|.+.. ..+...|.|.|||.||+.+++..++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 668999999999999654 77777764 235678999999999999999998753332221 34456679999
Q ss_pred eeeeec---ccCCeEEEEEEe
Q 005635 265 FKTGAM---RLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~~---~lg~~v~V~Sk~ 282 (686)
|+.+.. .++-++.+.+..
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 965433 355666666654
No 36
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.73 E-value=2e-05 Score=90.24 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=81.1
Q ss_pred hHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccC-C
Q 005635 173 PSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK-Q 249 (686)
Q Consensus 173 p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s-~ 249 (686)
...=+++ +...+.++..++.||+-||+||+|+.|.|.+... ...+.|.|||.||..++|..+-. +.+| -
T Consensus 7 ~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~--------t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~ 78 (1142)
T KOG1977|consen 7 VEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNME--------TFSVQVIDDGFGMGRDDLEKLGNRYFTSKC 78 (1142)
T ss_pred hhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCc--------eeEEEEEecCCCccHHHHHHHHhhhhhhhc
Confidence 3444555 3333357889999999999999999999998752 56889999999999999987642 2222 1
Q ss_pred CCCCCCCcccccCceeeeee---cccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEecc-ccCCCCcEEEEE
Q 005635 250 PDADDPNRIGRFGVGFKTGA---MRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-SYYRKGQFMELD 319 (686)
Q Consensus 250 k~~~~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~-~~~~~Gt~I~l~ 319 (686)
...++...--.| ||...+ ++--..+.|+|++.+... ++.-..|..|..-...++. +-...||.|++.
T Consensus 79 h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r~~-~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 79 HSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNRTM-KTFVKKFQSGSALKALEIDVTRASSGTTVTVY 149 (1142)
T ss_pred eecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCCch-hHHHHHHhccccceecccccccccCCcEEEeH
Confidence 111233333344 555433 223356778888766421 1111122233333344442 222469988763
No 37
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.27 E-value=0.00058 Score=77.53 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 005635 186 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 260 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~ 260 (686)
...+.+.-|||||+||-+ +.|.+.+.. .++...|.|.|||+||+++....++..|.|.|. -+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 477899999999999966 677777764 345678899999999999999999999998875 234
Q ss_pred cCceeeee---ecccCCeEEEEEE
Q 005635 261 FGVGFKTG---AMRLGKDALVLTQ 281 (686)
Q Consensus 261 fGvGfKsA---~~~lg~~v~V~Sk 281 (686)
-|+|++.. .=+++..+.|.+.
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeC
Confidence 48887632 2256777777775
No 38
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.18 E-value=0.00077 Score=57.81 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++.||++||+++... .|.|.+.. ..+...+.|.|+|.||+.+.+...+..+.+... .....+..|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999775 66666653 234568999999999999998887654332221 22334567888
Q ss_pred eee
Q 005635 265 FKT 267 (686)
Q Consensus 265 fKs 267 (686)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 854
No 39
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.10 E-value=0.00098 Score=56.18 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=55.3
Q ss_pred HHHHHHHHhcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 188 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 188 ~~AIaELIdNS~DA~A---t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
..++.|||+||+++.+ ..|.|.+.. ..+...+.|.|+|.||++..+...+...... ......+..|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3689999999999976 455555542 2335678999999999999988876432111 112334567888
Q ss_pred eeeeec---ccCCeEEEEEEe
Q 005635 265 FKTGAM---RLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~~---~lg~~v~V~Sk~ 282 (686)
++.+.- +++.++.+.+..
T Consensus 73 l~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 864321 244566665543
No 40
>PRK10604 sensor protein RstB; Provisional
Probab=97.04 E-value=0.0014 Score=72.94 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++.+||+||+.+....|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 56789999999999988888888764 2334679999999999999999988633322111 1122356799984
Q ss_pred ee---ecccCCeEEEEEEe
Q 005635 267 TG---AMRLGKDALVLTQT 282 (686)
Q Consensus 267 sA---~~~lg~~v~V~Sk~ 282 (686)
-+ .-..|.++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 32 22456677776654
No 41
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.83 E-value=0.0026 Score=70.13 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45689999999999988888887763 2334579999999999999998887532322111 1122356788875
Q ss_pred ee---ecccCCeEEEEEEe
Q 005635 267 TG---AMRLGKDALVLTQT 282 (686)
Q Consensus 267 sA---~~~lg~~v~V~Sk~ 282 (686)
.+ ....+.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 12355666666543
No 42
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.80 E-value=0.0032 Score=69.14 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... ... .+.+|+|+.
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL~ 402 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhHH
Confidence 46789999999999988888887763 233457999999999999999988763332211 111 245788874
Q ss_pred eee---cccCCeEEEEEE
Q 005635 267 TGA---MRLGKDALVLTQ 281 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk 281 (686)
-+- -..+.++.+.+.
T Consensus 403 iv~~i~~~~~g~l~i~~~ 420 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNS 420 (435)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 221 124556666554
No 43
>PRK10364 sensor protein ZraS; Provisional
Probab=96.76 E-value=0.0031 Score=70.25 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+.+.-+.+.+. +..|+|
T Consensus 349 l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~GlG 415 (457)
T PRK10364 349 LTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCccc
Confidence 56889999999999843 466666653 233467999999999999999998865554332 235888
Q ss_pred eeeee---cccCCeEEEEEEe
Q 005635 265 FKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~ 282 (686)
+..+- -..|.++.+.+..
T Consensus 416 L~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 416 LAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 75322 2356666666643
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.68 E-value=0.0029 Score=67.90 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=59.2
Q ss_pred CHHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCc
Q 005635 186 WIFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~--At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
++..++..||+||+.+. ...|.|.+.. .++.-.|.|.|||.||+++++.+.+.-++.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 56689999999999985 3567777653 234567999999999999999988753332111 1245688
Q ss_pred eeeee---ecccCCeEEEEEEeC
Q 005635 264 GFKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 264 GfKsA---~~~lg~~v~V~Sk~~ 283 (686)
|++.+ .-.+|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 87533 223566777776543
No 45
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.63 E-value=0.0057 Score=67.14 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|..||+||+.+... .|.|.+... ..+.-.|.|.|||.||+.+++.++|.-....+. ....+.+|+|
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~-----~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLG 344 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHR-----TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIG 344 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEec-----CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCccccc
Confidence 567999999999998654 444443210 223456899999999999999998853222221 1122457888
Q ss_pred eeeee---cccCCeEEEEEEeC
Q 005635 265 FKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~~ 283 (686)
+..+. -.+|.++.|.|...
T Consensus 345 L~i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 345 LSVCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 74321 24677777777544
No 46
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.59 E-value=0.0037 Score=63.58 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCC
Q 005635 185 GWIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 249 (686)
Q Consensus 185 ~~~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~ 249 (686)
.++..+|..||+||++|. ...|.|.+.. ..+.-.|.|.|||.||+++.+...+..+.+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~ 286 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRT 286 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeecc
Confidence 356779999999999999 4788887763 1124679999999999999988887644433
No 47
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.54 E-value=0.0068 Score=68.27 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccC
Q 005635 187 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 262 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fG 262 (686)
+..++.+|++||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-+.+.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 56789999999999842 356665543 234567899999999999999998864444332 1348
Q ss_pred ceeeeee---cccCCeEEEEEE
Q 005635 263 VGFKTGA---MRLGKDALVLTQ 281 (686)
Q Consensus 263 vGfKsA~---~~lg~~v~V~Sk 281 (686)
+|+..+- -..+..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 8874321 134556666554
No 48
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.54 E-value=0.0047 Score=67.75 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++.+.+.+.-+++.+.... ..-+..|+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~GlG 426 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCcccc
Confidence 56789999999999874 456666653 233457999999999999999988753332221111 122346888
Q ss_pred eeeee---cccCCeEEEEE
Q 005635 265 FKTGA---MRLGKDALVLT 280 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~S 280 (686)
++.+. -++|..+.+.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 75322 13455555555
No 49
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.49 E-value=0.0058 Score=67.09 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccccCCC------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 005635 187 IFGAIAELVDNSRDAKAT------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 260 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At------~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~ 260 (686)
+..++.+|+.||+++.+. .|.|.+.. ..+.-.|+|.|||.||+++.+.+.|.-.++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 467999999999998432 24444332 2345679999999999999999988633322211 1233
Q ss_pred cCceeeeee---cccCCeEEEEEEe
Q 005635 261 FGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 261 fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
-|+|+..+- -.+|..+.|.|..
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEECC
Confidence 578875321 1356777776643
No 50
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.49 E-value=0.0072 Score=66.92 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCc
Q 005635 186 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
.+..++.+||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 3668999999999999654 45555442 2334679999999999999999987522221111 1122345688
Q ss_pred eeeeee---cccCCeEEEEEEe
Q 005635 264 GFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 264 GfKsA~---~~lg~~v~V~Sk~ 282 (686)
|+..+. -..|.++.|.|..
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 875321 2356666666643
No 51
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.48 E-value=0.0093 Score=61.88 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++.+||.||+++... .|.|.+.. ..+.-.|.|.|||.||+++.+.+++......... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567999999999998654 45555442 2234679999999999999999887633321111 01112335888
Q ss_pred eeeee---cccCCeEEEEEEe
Q 005635 265 FKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~ 282 (686)
++.+. -..|.++.+.|..
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 75432 1356777777654
No 52
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.23 E-value=0.01 Score=65.78 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 567899999999998553 56666553 2334578999999999999999887522222211 11234567888
Q ss_pred eeeee---cccCCeEEEEEEe
Q 005635 265 FKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~ 282 (686)
+..+. -..+.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 75321 2356666666643
No 53
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.21 E-value=0.011 Score=65.02 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCc
Q 005635 186 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.+.. ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 467899999999999854 467776653 2345679999999999999999988633322210 111234588
Q ss_pred eeeeee---cccCCeEEEEEEe
Q 005635 264 GFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 264 GfKsA~---~~lg~~v~V~Sk~ 282 (686)
|++.+- ..++..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 875432 1356666666643
No 54
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.21 E-value=0.0079 Score=68.38 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 005635 187 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 260 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~ 260 (686)
+...+.+||+||+++. ...|.|.+.. ..+.-.|.|.|||.||+++++.+.|..+++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567999999999983 3566666653 2334678999999999999999988755554421 1234
Q ss_pred cCceeeeee---cccCCeEEEEEE
Q 005635 261 FGVGFKTGA---MRLGKDALVLTQ 281 (686)
Q Consensus 261 fGvGfKsA~---~~lg~~v~V~Sk 281 (686)
-|+|++.+- -..+..+.|.|.
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~ 526 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDN 526 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEEC
Confidence 588875321 124555555553
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.11 E-value=0.011 Score=67.15 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++...+.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 46799999999999988778887753 233457999999999999999888753332211 1124688885
Q ss_pred eee---cccCCeEEEEEE
Q 005635 267 TGA---MRLGKDALVLTQ 281 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk 281 (686)
.+. -..|.++.|.+.
T Consensus 448 Ivk~iv~~~gG~i~v~s~ 465 (485)
T PRK10815 448 VAREITEQYEGKISAGDS 465 (485)
T ss_pred HHHHHHHHcCCEEEEEEC
Confidence 321 134555555554
No 56
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.08 E-value=0.011 Score=70.06 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH-HHHhhhcccCCCCCCCCCcccccCc
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~e-L~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
+..++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++. ..+.+....+.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 55789999999999964 467777653 23456799999999999998 5556653333221 34588
Q ss_pred eeeeee---cccCCeEEEEEEe
Q 005635 264 GFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 264 GfKsA~---~~lg~~v~V~Sk~ 282 (686)
|++.+- -.+|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 875332 2356677776644
No 57
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.87 E-value=0.018 Score=64.72 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCc
Q 005635 187 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~--I~I~i~~~~~~~~~~~~-~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
+..++.+||+||+.+.... |.|.+.. ..+. -.|.|.|||.||+++++...+..+.+.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 6678999999999985544 4454432 1223 78999999999999999888764433221 13477
Q ss_pred eeeee---ecccCCeEEEEEEe
Q 005635 264 GFKTG---AMRLGKDALVLTQT 282 (686)
Q Consensus 264 GfKsA---~~~lg~~v~V~Sk~ 282 (686)
|+..+ .-.+|.++.|.|..
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcC
Confidence 76432 12366677776654
No 58
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.85 E-value=0.012 Score=67.63 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCC
Q 005635 187 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 249 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~ 249 (686)
+...+-.||.||+||-+ ..|.|.... .++.-.|+|.|||+||.++-+..+|. |-+++
T Consensus 498 LeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 498 LEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 77899999999999954 567776653 34567899999999999999999987 54443
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=95.76 E-value=0.021 Score=63.07 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++.+||+||+++......|.+... ...|+|.|||.||+++++...+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 456899999999998765434444321 237999999999999999988752222111 12245788875
Q ss_pred eee---cccCCeEEEEEEe
Q 005635 267 TGA---MRLGKDALVLTQT 282 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk~ 282 (686)
.+- -..|.++.+.+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 321 2356666666543
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.61 E-value=0.026 Score=68.25 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+ ...|..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQAD-----THSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCC-----CCCCCCchHH
Confidence 56789999999999853 457776653 23456789999999999999999875222221 1124568887
Q ss_pred eeee---cccCCeEEEEEEeC
Q 005635 266 KTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 266 KsA~---~~lg~~v~V~Sk~~ 283 (686)
..+. -.+|.++.|.|...
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 5332 13577788877554
No 61
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.45 E-value=0.034 Score=66.36 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-..+.+.. .....+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 56789999999999854 346665543 2345679999999999999999988633322211 11122347888
Q ss_pred eeeee---cccCCeEEEEEEe
Q 005635 265 FKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~ 282 (686)
++.+- ...|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 86432 2356667666654
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.42 E-value=0.035 Score=66.39 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.++|...+..+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 56789999999999863 4566766531 12346789999999999999999886323222111222245567787
Q ss_pred eee---ecccCCeEEEEEEeC
Q 005635 266 KTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 266 KsA---~~~lg~~v~V~Sk~~ 283 (686)
..+ .-..|.++.|.|...
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 422 124688888888654
No 63
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.36 E-value=0.044 Score=51.14 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 005635 186 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 260 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~-----At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~ 260 (686)
.+..++.||+.||+..+ ...|.|.+.. ..+.-.|.|.|+|.||+. +...+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35689999999999753 2457776653 233567899999999973 3344432222211 1234
Q ss_pred cCceeeeeecccCCeEEEEEE
Q 005635 261 FGVGFKTGAMRLGKDALVLTQ 281 (686)
Q Consensus 261 fGvGfKsA~~~lg~~v~V~Sk 281 (686)
-|+|+..+ -++..++.+.+.
T Consensus 106 ~GlGL~lv-~~~~~~l~~~~~ 125 (137)
T TIGR01925 106 SGMGFTVM-ENFMDDVSVDSE 125 (137)
T ss_pred CcccHHHH-HHhCCcEEEEEC
Confidence 57777422 234555555543
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=95.31 E-value=0.043 Score=60.96 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccC
Q 005635 186 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 262 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fG 262 (686)
.+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~G 446 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSG 446 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcc
Confidence 367899999999999854 346666653 22345799999999999999998875 3322211 111224578
Q ss_pred ceeeee---ecccCCeEEEEEE
Q 005635 263 VGFKTG---AMRLGKDALVLTQ 281 (686)
Q Consensus 263 vGfKsA---~~~lg~~v~V~Sk 281 (686)
+|+.-+ .-..+.++.+.|.
T Consensus 447 lGL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 447 IGLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred hHHHHHHHHHHHCCCEEEEEEC
Confidence 888432 1235666766664
No 65
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.20 E-value=0.036 Score=67.13 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceecc---------CCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCC
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 255 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~---------~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~ 255 (686)
+..++.+||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+++...++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56899999999999743 56777665310000 0123346899999999999999988863332221
Q ss_pred CcccccCceeeee---ecccCCeEEEEEEeC
Q 005635 256 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 256 ~~IG~fGvGfKsA---~~~lg~~v~V~Sk~~ 283 (686)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4568887432 124677888877643
No 66
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.10 E-value=0.047 Score=58.10 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccC-CC--ccEEEEEeceeccCCCC----cCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccc
Q 005635 187 IFGAIAELVDNSRDAK-AT--KLEISIESIYFKKAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 259 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At--~I~I~i~~~~~~~~~~~----~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG 259 (686)
+..++..||+||+++. .. .|.|.+..........+ ...|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 6689999999999975 33 44443321000000001 135899999999999998887753332221 2
Q ss_pred ccCceeeee---ecccCCeEEEEEEe
Q 005635 260 RFGVGFKTG---AMRLGKDALVLTQT 282 (686)
Q Consensus 260 ~fGvGfKsA---~~~lg~~v~V~Sk~ 282 (686)
.-|+|+..+ .-..|.++.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 347777422 22456777776643
No 67
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.82 E-value=0.063 Score=65.17 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..++..||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+...+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 55789999999999853 456666553 23345799999999999999999875222211 1125578887
Q ss_pred eee---ecccCCeEEEEEEeC
Q 005635 266 KTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 266 KsA---~~~lg~~v~V~Sk~~ 283 (686)
..+ .-.+|.++.|.|...
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 432 124688888888654
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.76 E-value=0.064 Score=65.39 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccCc
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~-~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fGv 263 (686)
+..+|..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.++|. |..... ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCccH
Confidence 56799999999999853 457776653 1223 6799999999999999999875 433221 122355688
Q ss_pred eeeeee---cccCCeEEEEEEeC
Q 005635 264 GFKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 264 GfKsA~---~~lg~~v~V~Sk~~ 283 (686)
|+..+- -.+|.++.|.|...
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 875321 24678888887654
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.66 E-value=0.052 Score=66.64 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCc
Q 005635 186 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGv 263 (686)
.+..++..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|.-.++.+. ....+-.|+
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GL 848 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGL 848 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccH
Confidence 356899999999999864 346665542 233467899999999999999988853222221 112234678
Q ss_pred eeeeee---cccCCeEEEEEEe
Q 005635 264 GFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 264 GfKsA~---~~lg~~v~V~Sk~ 282 (686)
|+..+- -..|.++.+.|..
T Consensus 849 GL~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 849 GLAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHHcCCEEEEEECC
Confidence 874321 1356777777654
No 70
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.27 E-value=0.1 Score=63.03 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|..||+||+.+.. ..|.|.+..... ......-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRAL-SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEec-CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 55789999999999853 345555542110 0011124589999999999999998875 4322211 11234567888
Q ss_pred eeee---ecccCCeEEEEEEeC
Q 005635 265 FKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA---~~~lg~~v~V~Sk~~ 283 (686)
+..+ .-.+|.++.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 7432 124678888888654
No 71
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=94.11 E-value=0.072 Score=60.88 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~D-A~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
...-++|-+.||+. |.|++|+|.+.. ..+...+.|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 55789999999997 489999999874 3478899999999999863 24567887764
Q ss_pred ee-eecccCCeEEEEEEeCC
Q 005635 266 KT-GAMRLGKDALVLTQTAD 284 (686)
Q Consensus 266 Ks-A~~~lg~~v~V~Sk~~g 284 (686)
-. =+-+|+..+.|..+..|
T Consensus 539 M~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC
Confidence 11 01246777777766544
No 72
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=93.99 E-value=0.13 Score=56.69 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC--C
Q 005635 187 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--D 254 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~----------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~--~ 254 (686)
+.-.+-||..||+.|. -..|.|.+-. ++....+.|.|-|+|++++++..+++|++|..... +
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 5678999999999992 2347777653 44567889999999999999999999988764321 1
Q ss_pred ---CCcccccCceee
Q 005635 255 ---PNRIGRFGVGFK 266 (686)
Q Consensus 255 ---~~~IG~fGvGfK 266 (686)
....--||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 334455666653
No 73
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=93.96 E-value=0.11 Score=63.86 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+. |-..... .....+..|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 55799999999999843 346665543 23345789999999999999999875 3322111 11122446888
Q ss_pred eeeee---cccCCeEEEEEEeC
Q 005635 265 FKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~~ 283 (686)
+..+. -.+|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75331 24678888888653
No 74
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.73 E-value=0.14 Score=60.91 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=52.9
Q ss_pred HHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH-------------
Q 005635 189 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------- 241 (686)
Q Consensus 189 ~AIaELIdNS~DA~A--------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~------------- 241 (686)
..|..||.||+|++- ..|.|.... .++.-.|.|.|||.||+++.+.+
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~l 461 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENM 461 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccC
Confidence 446789999999862 246665542 23445789999999999987753
Q ss_pred --------hhhcccCCCCCCCCCcccccCceeee---eecccCCeEEEEEEe
Q 005635 242 --------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQT 282 (686)
Q Consensus 242 --------~l~fG~s~k~~~~~~~IG~fGvGfKs---A~~~lg~~v~V~Sk~ 282 (686)
.|.-|++.+.. ...+...|+|+.. ..-.++..+.|.|..
T Consensus 462 s~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 462 SDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred CHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 22223443321 1223445888742 223467777777754
No 75
>PRK03660 anti-sigma F factor; Provisional
Probab=93.53 E-value=0.28 Score=46.17 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 005635 186 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 236 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ 236 (686)
.+..++.|++.||+..+. ..|.|.+.. ..+.-.+.|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 356899999999997542 346666542 233567899999999985
No 76
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.48 E-value=0.14 Score=49.98 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccc
Q 005635 186 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 260 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~ 260 (686)
.+-.|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+........ .+....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCC-
Confidence 466899999999998852 356776653 234577899999999998876654332111111 0111223
Q ss_pred cCceeeeeecccCCeEEEEE
Q 005635 261 FGVGFKTGAMRLGKDALVLT 280 (686)
Q Consensus 261 fGvGfKsA~~~lg~~v~V~S 280 (686)
|.|+..+- +|.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 77774333 4778877765
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.42 E-value=0.13 Score=50.01 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 005635 187 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 261 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~f 261 (686)
+..|+.|++.||+..+- ..|.|.+.. ..+.-.+.|.|+|.||+++.+...+......... +...-|
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~-- 113 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREG-- 113 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCC--
Confidence 55899999999998853 346666553 2446789999999999988776655422211111 111122
Q ss_pred CceeeeeecccCCeEEEEE
Q 005635 262 GVGFKTGAMRLGKDALVLT 280 (686)
Q Consensus 262 GvGfKsA~~~lg~~v~V~S 280 (686)
|+|+...- ++.+++.+.+
T Consensus 114 G~GL~li~-~l~d~v~~~~ 131 (161)
T PRK04069 114 GLGLFLIE-TLMDDVTVYK 131 (161)
T ss_pred ceeHHHHH-HHHHhEEEEc
Confidence 66764332 2556665553
No 78
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.31 E-value=0.2 Score=61.57 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++..||+||+++.+ ..|.|.+.... ...+.-.|.|.|+|.||+++++.+.+. |-. .+.. ...-+.-|+|
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~~---~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~~~--~~~~~GtGLG 639 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQDE---SSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QTQG--DRYGKASGLT 639 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcc---CCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CCCC--CCCCCCcChh
Confidence 56789999999999854 35666665310 112345789999999999999999875 432 2211 1112235777
Q ss_pred eeee---ecccCCeEEEEEEeC
Q 005635 265 FKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA---~~~lg~~v~V~Sk~~ 283 (686)
+..+ .-.+|.++.|.|...
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 6322 124788899988754
No 79
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.68 E-value=0.19 Score=45.97 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 005635 187 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 261 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~f 261 (686)
+..|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++..+.....-.. .....-
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~--------~~~~~~ 97 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP--------DSLREG 97 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC--------CCCCCC
Confidence 668999999999998653 56666553 34467899999999999876544311000 112223
Q ss_pred CceeeeeecccCCeEEE
Q 005635 262 GVGFKTGAMRLGKDALV 278 (686)
Q Consensus 262 GvGfKsA~~~lg~~v~V 278 (686)
|.|+... -++++++.+
T Consensus 98 G~Gl~li-~~l~D~~~~ 113 (125)
T PF13581_consen 98 GRGLFLI-RSLMDEVDY 113 (125)
T ss_pred CcCHHHH-HHHHcEEEE
Confidence 6666322 237788877
No 80
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.59 E-value=0.14 Score=55.99 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 186 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA-~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
-++-++.|.|.|++.. +|+.+.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4889999999999986 79999999985 3445789999999998864411 2 334
Q ss_pred eee---eecccCCeEEEEEEe
Q 005635 265 FKT---GAMRLGKDALVLTQT 282 (686)
Q Consensus 265 fKs---A~~~lg~~v~V~Sk~ 282 (686)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 123478888888876
No 81
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.36 E-value=0.32 Score=61.12 Aligned_cols=93 Identities=11% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At-~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..+|..||+||+++... .+.|.+..... ......-.|.|.|||.||+++++.+++...+..+. ....+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGHI-DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEeee-cCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 567999999999998543 44554432100 00111235789999999999999998752222221 11223468887
Q ss_pred eeee---cccCCeEEEEEEeC
Q 005635 266 KTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 266 KsA~---~~lg~~v~V~Sk~~ 283 (686)
..+- -..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 5331 23677888887653
No 82
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.24 E-value=0.44 Score=57.22 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCC
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 250 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k 250 (686)
+..+|..|||||.....+..+|.|.-.. ..+.-.+.|+|+|.||+.+++.+.|. |-...+
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 4589999999999986544444443211 23567899999999999999999985 544433
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=91.06 E-value=0.22 Score=57.09 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 187 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
...++.|+++||+.+. +..|.|.+.. .++.-.|.|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5678999999999864 5667777653 2334679999999999864
No 84
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=90.91 E-value=0.098 Score=47.87 Aligned_cols=36 Identities=14% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCcchhhhHHHHHHHHhCCCeEEEEEece------eeEEEcC
Q 005635 11 ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 46 (686)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 46 (686)
..+.+...+.+|..||..++|+|||..+. ..+||+|
T Consensus 78 ~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 78 DSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred cCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 66778889999999999999999999995 8899998
No 85
>PRK13557 histidine kinase; Provisional
Probab=90.82 E-value=0.61 Score=52.29 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceecc---------CCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCC
Q 005635 187 IFGAIAELVDNSRDAKAT--KLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 255 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At--~I~I~i~~~~~~~---------~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~ 255 (686)
+..++..|+.||+++... .|.|......... ..++.-.|.|.|||.||+++.+...+...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 557899999999998543 3444332110000 0112346899999999999999888763333221
Q ss_pred CcccccCceeeee---ecccCCeEEEEEEeC
Q 005635 256 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 256 ~~IG~fGvGfKsA---~~~lg~~v~V~Sk~~ 283 (686)
..+..|+|+..+ .-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 123457776422 224678888877543
No 86
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.33 E-value=0.27 Score=56.87 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 186 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA-~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
+++..+.|+|+||+.+ .++.|.|.+.. .++.-.|.|.|||.||+++
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcc
Confidence 3678899999999986 45677777753 2345679999999999875
No 87
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.37 E-value=0.51 Score=48.71 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCC-cCEEEEEeCCCCCCH
Q 005635 187 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTH 236 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~-~~~L~I~DNG~GMt~ 236 (686)
+--++-||+.||+..++ ..|.|.+... ..+ ...+.|+|||.|++.
T Consensus 123 Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 123 LGLIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCC
Confidence 45789999999999865 4567776642 122 368999999999975
No 88
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=88.23 E-value=0.95 Score=43.89 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcccccCC------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccc
Q 005635 186 WIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 259 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG 259 (686)
.+-.|+.|++.|++.++- ..|.|.+.. ..+.-.+.|+|.|.|+. ++...+.-+.... ..-..|
T Consensus 40 ~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~---~~~~~~ 108 (146)
T COG2172 40 DLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGIE--DLEESLGPGDTTA---EGLQEG 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCCC--CHHHhcCCCCCCC---cccccc
Confidence 457899999999998742 345555543 34567899999996664 4555554442211 122233
Q ss_pred ccCceeeeeecccCCeEEEEEEeCC
Q 005635 260 RFGVGFKTGAMRLGKDALVLTQTAD 284 (686)
Q Consensus 260 ~fGvGfKsA~~~lg~~v~V~Sk~~g 284 (686)
|+|| ....++.+++.+.....+
T Consensus 109 --G~Gl-~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 109 --GLGL-FLAKRLMDEFSYERSEDG 130 (146)
T ss_pred --cccH-HHHhhhheeEEEEeccCC
Confidence 6666 344457777777754443
No 89
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=87.89 E-value=0.92 Score=51.37 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcccccC---CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCC
Q 005635 186 WIFGAIAELVDNSRDAK---ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 250 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~---At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k 250 (686)
.+...+-.|+-||+||. |..|+|.+.. ...+..+|.|.|||.|-+.+-+.+.+...++.|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 47788999999999995 4556666542 134567899999999999988888887434333
No 90
>PRK13560 hypothetical protein; Provisional
Probab=87.50 E-value=0.58 Score=55.28 Aligned_cols=44 Identities=25% Similarity=0.435 Sum_probs=31.1
Q ss_pred HHHHHHHhcccccC---C--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 189 GAIAELVDNSRDAK---A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 189 ~AIaELIdNS~DA~---A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..|.+||.||+++. . ..|.|.+.. ...+.-.|+|.|||+||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~-----~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIRE-----QGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEE-----cCCCEEEEEEEeCCCcCCcc
Confidence 47889999999973 2 345555542 12334578999999999975
No 91
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.47 E-value=1 Score=54.14 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=56.8
Q ss_pred HHHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHH-hhh--------
Q 005635 188 FGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-MTY-------- 244 (686)
Q Consensus 188 ~~AIaELIdNS~DA~A--------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~-~l~-------- 244 (686)
...|-.||-||+|.|- -.|.+.... .++.-.|.|.|||.||+++.+.+ ++.
T Consensus 434 ~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 434 GDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred cccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 3456789999999972 245544432 34566789999999999998864 332
Q ss_pred ---------------cccCCCCCCCCCcccccCcee---eeeecccCCeEEEEEEeC
Q 005635 245 ---------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTA 283 (686)
Q Consensus 245 ---------------fG~s~k~~~~~~~IG~fGvGf---KsA~~~lg~~v~V~Sk~~ 283 (686)
-|+|.+.. -..+.--|||+ |+..-+||..+.|.|+..
T Consensus 508 a~~lSd~Ei~~LIF~PGFSTa~~--VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 508 AETLSDEEILNLIFAPGFSTAEQ--VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred hccCCHHHHHHHHhcCCCCcchh--hhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 13343321 22333348887 455556888888888654
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=86.97 E-value=0.98 Score=51.23 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhh
Q 005635 186 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 243 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l 243 (686)
.|.-.|-=|||||+-||- ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 477788889999999973 33445444211 2445678999999999998876654
No 93
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.41 E-value=0.92 Score=49.92 Aligned_cols=72 Identities=17% Similarity=0.375 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCcccccCc
Q 005635 187 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 263 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~--At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG~fGv 263 (686)
....|-.+|.||+... ..+|.|.+.. ....-.++|.|.|.||+++++.+.|. |-.-.+. .....|--|+
T Consensus 343 ~tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGL 414 (459)
T COG5002 343 MTQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGL 414 (459)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCch
Confidence 4567888999999874 4566666653 23356789999999999999999984 5443332 3345676788
Q ss_pred eee
Q 005635 264 GFK 266 (686)
Q Consensus 264 GfK 266 (686)
|+.
T Consensus 415 GLa 417 (459)
T COG5002 415 GLA 417 (459)
T ss_pred hHH
Confidence 874
No 94
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=86.29 E-value=0.86 Score=53.20 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 187 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A---------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
+-.|+-.||.||.+|.+ ..|.+..+. .++.-.+.|.|||.|.+.+.+++++-
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 45789999999999843 124444432 34567889999999999999999874
No 95
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=81.84 E-value=2.3 Score=50.05 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 187 IFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A---t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
+-.....||.||+..+. ..|.|..+. .++.-++.|.|||.|++++-+.+.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHHH
Confidence 45677899999998864 567777653 34578899999999999999999875
No 96
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.54 E-value=2.1 Score=48.89 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 187 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
....+.+|+.||+.+. +..|.|.+... ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~-----~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTN-----PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEc-----CCCEEEEEEEECCcCcCCC
Confidence 4568999999999864 34566666421 1234578999999999863
No 98
>PRK13559 hypothetical protein; Provisional
Probab=77.81 E-value=2.2 Score=45.78 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 187 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
+..++.|||.||+.+++ ..|.|.+... ...+...|.+.|||.||+++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45789999999999853 3566665211 12345678899999997653
No 99
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=73.40 E-value=6.1 Score=43.07 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEecee--ccCCC----CcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 187 IFGAIAELVDNSRDAKAT----KLEISIESIYF--KKAGK----DIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At----~I~I~i~~~~~--~~~~~----~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
+..|+-.||.||..|.+. .=.|.+....- -...+ -.-.|.|.|||.|++.+-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 668999999999999662 12233321100 00011 123478999999999877777765
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=72.61 E-value=6.4 Score=43.26 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=47.9
Q ss_pred HHHHHHhccc-ccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceeeee
Q 005635 190 AIAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTG 268 (686)
Q Consensus 190 AIaELIdNS~-DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA 268 (686)
.+-|-+.|-- -|+|++|.|.+.. ..+.-.+.|.|||.|.+..+..+- +.|+|+.--
T Consensus 363 v~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~GiGLRNM 419 (459)
T COG4564 363 VVQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGIGLRNM 419 (459)
T ss_pred HHHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------ccccccccH
Confidence 3344444432 3589999998873 345678999999999987664332 148887521
Q ss_pred --ec-ccCCeEEEEEEeCCC
Q 005635 269 --AM-RLGKDALVLTQTADS 285 (686)
Q Consensus 269 --~~-~lg~~v~V~Sk~~g~ 285 (686)
-| .+|..+.|.|-..|+
T Consensus 420 rERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 420 RERMAHFGGELEVESSPQGT 439 (459)
T ss_pred HHHHHHhCceEEEEecCCCc
Confidence 11 268888888866665
No 101
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=70.53 E-value=16 Score=44.29 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhcccc-c---CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHh------hhcc----cCCC
Q 005635 185 GWIFGAIAELVDNSRD-A---KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM------TYFG----HKQP 250 (686)
Q Consensus 185 ~~~~~AIaELIdNS~D-A---~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~------l~fG----~s~k 250 (686)
..++..+-|++.||.| . .-..|.+.|+ .....+.|.+||.||+-+....- +-|| .++-
T Consensus 52 pGl~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny 123 (842)
T KOG0355|consen 52 PGLYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNY 123 (842)
T ss_pred CcHHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhcccc
Confidence 5688899999999999 2 2245666665 34679999999999987654321 1122 2221
Q ss_pred C-CCCCCcccccCceeeeeecccCCeEEEEEE
Q 005635 251 D-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 281 (686)
Q Consensus 251 ~-~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk 281 (686)
. ....-.-|+.|.|-|.... ++.+++|.|-
T Consensus 124 ~d~ekK~tggrngygakLcni-Fs~~f~~Et~ 154 (842)
T KOG0355|consen 124 DDDEKKVTGGRNGYGAKLCNI-FSTEFTVETA 154 (842)
T ss_pred CCCccccccCCCccceeeeee-ccccceeeee
Confidence 1 1123455677777775554 5666666664
No 102
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=58.97 E-value=10 Score=42.16 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 005635 187 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 236 (686)
Q Consensus 187 ~~~AIaELIdNS~D-A~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ 236 (686)
.+-..-|++.|=.. |.|+.|+|.+-. ++..-++.|.|||.|++.
T Consensus 411 LyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 411 LYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPP 455 (497)
T ss_pred HHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCC
Confidence 77888999999775 689999998863 233478999999999975
No 103
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=56.05 E-value=2.5 Score=32.95 Aligned_cols=35 Identities=23% Similarity=0.696 Sum_probs=23.4
Q ss_pred CCCCCceecCccchhhccCCC-CCC---CCCCCCCceec
Q 005635 572 YKPDQEWVQCNKCRKWRMLDP-GFD---TKSLPVEWFCY 606 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp~-~~~---~~~lp~~W~C~ 606 (686)
..++..+||||.|.+|-...= +.. ...+...|+|.
T Consensus 8 ~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 8 SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 345679999999999988762 221 12233489985
No 104
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=43.50 E-value=20 Score=41.32 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccCC------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 187 IFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
|.-.|-=||+||+..|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 44467789999998853 467777764 2345789999999999986
No 105
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=26.24 E-value=39 Score=31.60 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=11.8
Q ss_pred chhhhHHHHHHHHhC
Q 005635 14 RDHNEWRRFLIYLQG 28 (686)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (686)
+...+|.|||||...
T Consensus 85 ~s~~~WdRFMRFMeR 99 (111)
T PLN00039 85 RSPREWDRFMRFMER 99 (111)
T ss_pred CCHHHHHHHHHHHHH
Confidence 345799999999853
No 106
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=26.15 E-value=39 Score=31.20 Aligned_cols=15 Identities=33% Similarity=0.886 Sum_probs=11.9
Q ss_pred chhhhHHHHHHHHhC
Q 005635 14 RDHNEWRRFLIYLQG 28 (686)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (686)
+...+|.|||||...
T Consensus 80 ~s~~~wdRFMRFmeR 94 (104)
T PRK13611 80 ETEAEWDRFLRFMER 94 (104)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356799999999853
No 107
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=25.94 E-value=74 Score=36.79 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhccccc-----CCCccEEEEEeceeccCCCCcCEEEEEeCCC---CCCHHHHHHhhhcccCCCCC----
Q 005635 185 GWIFGAIAELVDNSRDA-----KATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPDA---- 252 (686)
Q Consensus 185 ~~~~~AIaELIdNS~DA-----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~---GMt~~eL~~~l~fG~s~k~~---- 252 (686)
..|..|++|+|-||+=. .+..|.|.+. ...|.|.-.|. ||+++++.+- .|..+.
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 35789999999999954 2347777775 46899998776 8887776552 221110
Q ss_pred ---CCCCcccccCceee
Q 005635 253 ---DDPNRIGRFGVGFK 266 (686)
Q Consensus 253 ---~~~~~IG~fGvGfK 266 (686)
.+...+-++|-|+.
T Consensus 335 ~~l~~~~liE~~GSGi~ 351 (467)
T COG2865 335 KVLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHHhhhHHHhCccHH
Confidence 13456668888875
No 108
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=25.05 E-value=42 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.944 Sum_probs=11.8
Q ss_pred chhhhHHHHHHHHhC
Q 005635 14 RDHNEWRRFLIYLQG 28 (686)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (686)
+...+|.|||||...
T Consensus 87 ~s~~~WdRFMRFMeR 101 (113)
T PRK13612 87 KSEQEWDRFMRFMER 101 (113)
T ss_pred CCHHHHHHHHHHHHH
Confidence 346799999999853
No 109
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=24.96 E-value=43 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.977 Sum_probs=11.8
Q ss_pred chhhhHHHHHHHHhC
Q 005635 14 RDHNEWRRFLIYLQG 28 (686)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (686)
+...+|.|||||...
T Consensus 84 ~s~~~WdRFMRFmeR 98 (109)
T TIGR03047 84 KSEDEWDRFMRFMER 98 (109)
T ss_pred CCHHHHHHHHHHHHH
Confidence 345799999999863
No 110
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=24.18 E-value=45 Score=31.30 Aligned_cols=14 Identities=21% Similarity=0.871 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHhC
Q 005635 15 DHNEWRRFLIYLQG 28 (686)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (686)
...+|.|||||...
T Consensus 88 s~~~WdRFMRFMeR 101 (113)
T CHL00128 88 NPEAWDRFMRFMER 101 (113)
T ss_pred CHHHHHHHHHHHHH
Confidence 45799999999853
No 111
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=23.67 E-value=33 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=14.6
Q ss_pred CCCCCceecCccchhhccCCCCC
Q 005635 572 YKPDQEWVQCNKCRKWRMLDPGF 594 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp~~~ 594 (686)
|.....+|||+.|..|..+.+.+
T Consensus 23 Y~~GvViv~C~gC~~~HlIaDnL 45 (66)
T PF05180_consen 23 YHKGVVIVQCPGCKNRHLIADNL 45 (66)
T ss_dssp HHTSEEEEE-TTS--EEES--SS
T ss_pred HhCCeEEEECCCCcceeeehhhh
Confidence 44556899999999999998875
No 112
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=23.04 E-value=46 Score=31.01 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHh
Q 005635 15 DHNEWRRFLIYLQ 27 (686)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (686)
...+|.|||||+.
T Consensus 85 s~~~WdRFMRFMe 97 (108)
T PF03912_consen 85 SEEEWDRFMRFME 97 (108)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3568999999985
No 113
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=22.08 E-value=39 Score=36.17 Aligned_cols=30 Identities=20% Similarity=0.772 Sum_probs=22.9
Q ss_pred CceecCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 005635 576 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 576 ~~wvQCd~--C~-KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
...|.||. |. .|=+++ -++. ..-.++|||.
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred ccccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 37899996 99 999998 3443 3446789996
Done!