Query 005635
Match_columns 686
No_of_seqs 382 out of 2153
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 3.3E-22 1.1E-26 204.0 7.4 169 168-347 20-218 (239)
2 3peh_A Endoplasmin homolog; st 99.9 5.2E-22 1.8E-26 206.5 8.2 168 169-347 28-227 (281)
3 1y4s_A Chaperone protein HTPG; 99.8 7.2E-20 2.5E-24 206.9 19.6 171 168-347 8-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 7.1E-21 2.4E-25 195.0 8.3 162 174-347 35-268 (272)
5 1qy5_A Endoplasmin; GRP94, NEC 99.8 6.8E-21 2.3E-25 197.9 5.6 162 174-347 16-212 (269)
6 2gqp_A Endoplasmin; GRP94, HSP 99.8 2.5E-20 8.5E-25 190.3 7.2 162 174-347 20-216 (236)
7 3t0h_A Heat shock protein HSP 99.8 2.2E-20 7.4E-25 189.9 6.5 169 168-347 13-211 (228)
8 3o0i_A HSP90AA1 protein; HSP90 99.8 2.8E-20 9.5E-25 191.6 6.3 169 168-347 41-239 (256)
9 1yc1_A HSP 86, heat shock prot 99.8 7.4E-20 2.5E-24 189.7 8.3 163 174-347 56-247 (264)
10 2wer_A ATP-dependent molecular 99.8 1.2E-19 4E-24 183.2 8.8 163 174-347 14-206 (220)
11 2cg9_A ATP-dependent molecular 99.8 4.7E-19 1.6E-23 203.4 11.7 168 169-347 8-206 (677)
12 2ior_A Chaperone protein HTPG; 99.8 4.3E-19 1.5E-23 181.0 6.9 165 174-347 35-229 (235)
13 2ioq_A Chaperone protein HTPG; 99.7 5.3E-19 1.8E-23 202.1 6.1 170 169-347 9-209 (624)
14 2o1u_A Endoplasmin; GRP94, HSP 99.7 9.3E-19 3.2E-23 200.8 6.4 162 174-347 33-229 (666)
15 2e61_A Zinc finger CW-type PWW 99.7 1.9E-17 6.6E-22 138.0 4.9 55 569-623 9-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.6 7.8E-17 2.7E-21 143.0 -0.1 61 569-629 19-82 (100)
17 1b63_A MUTL; DNA mismatch repa 99.4 2.3E-13 7.8E-18 145.3 11.9 141 166-319 3-150 (333)
18 1ei1_A DNA gyrase B, GYRB; ATP 99.4 2.7E-12 9.4E-17 139.8 19.3 310 161-559 10-363 (391)
19 3cwv_A DNA gyrase, B subunit, 99.4 1.1E-12 3.9E-17 141.8 13.7 313 158-559 4-347 (369)
20 3fv5_A DNA topoisomerase 4 sub 99.4 2.5E-13 8.7E-18 135.4 7.6 173 166-369 2-193 (201)
21 3h4l_A DNA mismatch repair pro 99.4 3.5E-13 1.2E-17 145.6 8.8 183 168-367 6-195 (367)
22 4duh_A DNA gyrase subunit B; s 99.4 3.6E-13 1.2E-17 136.1 6.3 182 161-369 11-210 (220)
23 4emv_A DNA topoisomerase IV, B 99.4 7.6E-13 2.6E-17 134.2 8.3 183 159-369 15-216 (226)
24 1h7s_A PMS1 protein homolog 2; 99.3 2.4E-12 8.2E-17 139.1 9.7 139 168-319 15-160 (365)
25 1kij_A DNA gyrase subunit B; t 99.3 1.5E-11 5.1E-16 134.0 15.6 310 161-559 9-362 (390)
26 1s16_A Topoisomerase IV subuni 99.3 3.3E-12 1.1E-16 139.1 9.0 304 161-559 11-361 (390)
27 3na3_A DNA mismatch repair pro 99.3 6.2E-12 2.1E-16 135.0 9.2 140 168-319 9-154 (348)
28 3lnu_A Topoisomerase IV subuni 99.2 4.9E-12 1.7E-16 138.2 5.5 177 161-368 30-225 (408)
29 1zxm_A TOPO IIA ATPase, DNA to 99.2 1.2E-11 4.2E-16 135.0 6.1 188 159-368 5-233 (400)
30 1pvg_A DNA topoisomerase II; G 99.1 5.4E-11 1.9E-15 130.5 5.5 186 159-368 16-246 (418)
31 3ttz_A DNA gyrase subunit B; p 99.0 2.6E-10 8.9E-15 113.5 5.9 168 162-369 9-183 (198)
32 2q2e_B Type 2 DNA topoisomeras 98.4 3.4E-07 1.1E-11 105.1 6.9 164 186-368 37-214 (621)
33 1mu5_A Type II DNA topoisomera 98.4 7.3E-07 2.5E-11 99.3 9.3 132 186-321 32-178 (471)
34 4gfh_A DNA topoisomerase 2; to 98.3 1.8E-07 6.2E-12 113.9 3.6 152 159-323 11-204 (1177)
35 2zbk_B Type 2 DNA topoisomeras 98.3 1.3E-06 4.4E-11 98.7 9.3 132 186-321 31-177 (530)
36 1id0_A PHOQ histidine kinase; 97.6 8.8E-05 3E-09 67.6 6.5 85 187-282 45-132 (152)
37 1bxd_A ENVZ(290-450), protein 97.4 0.00011 3.7E-09 68.1 5.2 87 187-282 48-137 (161)
38 2c2a_A Sensor histidine kinase 97.3 0.00022 7.4E-09 71.1 5.5 90 187-283 139-236 (258)
39 2q8g_A [pyruvate dehydrogenase 97.3 0.0002 6.9E-09 77.4 5.6 90 187-282 244-350 (407)
40 1th8_A Anti-sigma F factor; SP 97.2 0.00031 1.1E-08 64.2 5.6 82 187-282 40-126 (145)
41 1ysr_A Sensor-type histidine k 97.2 0.00042 1.4E-08 63.2 6.5 86 187-282 47-136 (150)
42 2e0a_A Pyruvate dehydrogenase 97.2 0.00028 9.7E-09 75.9 5.4 90 187-282 231-337 (394)
43 2btz_A Pyruvate dehydrogenase 97.2 0.00026 9E-09 76.1 5.1 90 187-282 232-337 (394)
44 4ew8_A Sensor protein DIVL; si 97.1 0.00049 1.7E-08 68.5 6.3 83 187-282 156-243 (268)
45 1y8o_A [pyruvate dehydrogenase 97.1 0.00028 9.6E-09 76.8 4.4 90 187-282 254-361 (419)
46 3jz3_A Sensor protein QSEC; he 97.1 0.00027 9.2E-09 68.0 3.7 83 187-281 118-203 (222)
47 1i58_A Chemotaxis protein CHEA 97.1 0.00018 6.1E-09 68.6 2.1 47 187-239 48-108 (189)
48 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00022 7.5E-09 76.5 2.9 91 186-282 238-360 (388)
49 3d36_A Sporulation kinase B; G 97.0 0.00071 2.4E-08 66.0 6.3 85 187-283 124-213 (244)
50 3a0y_A Sensor protein; ATP-LID 97.0 0.00041 1.4E-08 62.9 3.9 82 187-281 48-135 (152)
51 1r62_A Nitrogen regulation pro 96.9 0.00019 6.5E-09 65.6 0.9 89 187-282 49-147 (160)
52 3sl2_A Sensor histidine kinase 96.9 0.00055 1.9E-08 64.4 4.1 92 187-283 44-140 (177)
53 3ehh_A Sensor kinase (YOCF pro 96.8 0.00074 2.5E-08 65.2 4.0 71 187-282 131-205 (218)
54 3ehg_A Sensor kinase (YOCF pro 96.7 0.0007 2.4E-08 60.7 2.7 71 187-282 41-115 (128)
55 1b3q_A Protein (chemotaxis pro 96.7 0.0012 4.2E-08 70.9 5.1 89 187-283 107-236 (379)
56 3a0r_A Sensor protein; four he 96.5 0.0014 4.7E-08 67.5 3.9 82 187-281 245-332 (349)
57 3zxo_A Redox sensor histidine 96.3 0.0033 1.1E-07 55.6 4.8 69 186-283 43-115 (129)
58 3zxq_A Hypoxia sensor histidin 96.0 0.0047 1.6E-07 54.3 4.0 45 187-238 40-85 (124)
59 4gut_A Lysine-specific histone 93.6 0.0089 3E-07 70.4 -1.2 46 576-621 91-146 (776)
60 4fpp_A Phosphotransferase; fou 93.0 0.081 2.8E-06 52.9 4.9 82 187-281 147-235 (247)
61 3o70_A PHD finger protein 13; 92.4 0.06 2E-06 44.4 2.4 32 575-606 30-62 (68)
62 3o7a_A PHD finger protein 13 v 91.5 0.064 2.2E-06 41.7 1.5 32 575-606 15-47 (52)
63 1we9_A PHD finger family prote 90.6 0.12 4.1E-06 41.5 2.4 36 572-607 16-54 (64)
64 2lv9_A Histone-lysine N-methyl 89.8 0.14 4.9E-06 44.9 2.4 33 575-607 39-72 (98)
65 1wee_A PHD finger family prote 89.7 0.2 6.7E-06 41.4 3.0 32 576-607 29-62 (72)
66 3ke6_A Protein RV1364C/MT1410; 88.1 0.31 1.1E-05 52.5 4.1 47 186-237 297-348 (399)
67 3kqi_A GRC5, PHD finger protei 79.4 0.39 1.3E-05 39.9 0.1 36 572-607 19-57 (75)
68 1wep_A PHF8; structural genomi 79.0 0.2 7E-06 42.1 -1.8 33 574-606 23-58 (79)
69 2rsd_A E3 SUMO-protein ligase 76.8 1.2 4.2E-05 36.3 2.3 32 575-606 21-60 (68)
70 1ixm_A SPO0B, protein (sporula 76.7 0.93 3.2E-05 44.3 1.9 48 191-244 110-167 (192)
71 2kgg_A Histone demethylase jar 74.1 1.1 3.7E-05 34.7 1.3 35 572-606 12-49 (52)
72 1wew_A DNA-binding family prot 73.6 0.84 2.9E-05 38.3 0.6 34 574-607 26-68 (78)
73 2k16_A Transcription initiatio 71.6 0.92 3.2E-05 37.4 0.4 32 575-606 30-63 (75)
74 2vpb_A Hpygo1, pygopus homolog 71.6 1.2 4.2E-05 36.2 1.1 20 571-590 17-37 (65)
75 2ri7_A Nucleosome-remodeling f 71.0 0.64 2.2E-05 44.3 -0.9 34 574-607 19-55 (174)
76 1ow1_A Smart/HDAC1 associated 59.8 4.6 0.00016 39.8 2.7 29 20-48 128-163 (195)
77 1weu_A Inhibitor of growth fam 57.5 4.3 0.00015 35.2 1.9 30 576-606 47-80 (91)
78 1wen_A Inhibitor of growth fam 53.6 6.2 0.00021 32.5 2.2 31 575-606 26-60 (71)
79 1wem_A Death associated transc 53.4 3.6 0.00012 34.0 0.7 32 575-606 27-65 (76)
80 2g6q_A Inhibitor of growth pro 47.0 6.1 0.00021 31.7 1.0 30 576-606 22-55 (62)
81 3c6w_A P28ING5, inhibitor of g 46.1 6.4 0.00022 31.2 1.0 30 576-606 20-53 (59)
82 3pur_A Lysine-specific demethy 45.3 7 0.00024 43.9 1.6 36 572-607 52-90 (528)
83 3lqh_A Histone-lysine N-methyl 44.1 7.5 0.00026 37.8 1.4 32 576-607 19-59 (183)
84 2jmi_A Protein YNG1, ING1 homo 41.0 16 0.00054 31.6 2.8 30 576-606 37-70 (90)
85 3kv5_D JMJC domain-containing 40.2 3.6 0.00012 45.9 -1.7 36 572-607 46-84 (488)
86 2xb1_A Pygopus homolog 2, B-ce 38.7 9.6 0.00033 33.7 1.1 36 572-607 13-57 (105)
87 2vnf_A ING 4, P29ING4, inhibit 37.6 10 0.00036 30.0 1.0 31 575-606 20-54 (60)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.1 12 0.00041 33.0 0.1 12 578-589 2-13 (140)
89 1x4i_A Inhibitor of growth pro 26.8 16 0.00053 30.0 0.4 31 575-606 16-50 (70)
90 2kvo_A Photosystem II reaction 22.0 31 0.0011 31.3 1.4 13 15-27 86-98 (120)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.85 E-value=3.3e-22 Score=203.99 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=127.8
Q ss_pred eeecCh-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005635 168 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 230 (686)
Q Consensus 168 ~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~At----------------~I~I~i~~~~~~~~~~~~~~L~I~DN 230 (686)
.++..- ..|..++.+.|+....+|+|||+||.||.++ .+.|.|.. ..+...|+|.||
T Consensus 20 ~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~Dn 93 (239)
T 3nmq_A 20 AFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDT 93 (239)
T ss_dssp ECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeC
Confidence 344443 5677778888899999999999999999642 35666653 134679999999
Q ss_pred CCCCCHHHHHHhh-hcccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635 231 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 301 (686)
Q Consensus 231 G~GMt~~eL~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 301 (686)
|.||++++|.+.+ .++.|.+ ...+...||+||+||++++| +|++|+|.|++.+. .++.|.+ .+...
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~ 168 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGS 168 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCc
Confidence 9999999997765 3443321 12357899999999999876 99999999999764 4677776 34446
Q ss_pred EEEeccc--cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 302 LEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 302 i~VP~~~--~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
+.|...+ ...+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 169 fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 169 FTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 6664332 2358999999999765 7888888876 8999999998775
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.85 E-value=5.2e-22 Score=206.55 Aligned_cols=168 Identities=24% Similarity=0.346 Sum_probs=127.2
Q ss_pred eecCh-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 005635 169 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 231 (686)
Q Consensus 169 v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG 231 (686)
++..- ..|..++.+.|+....+|+|||+||+||.+ ..+.|.|.. ..+...|+|.|||
T Consensus 28 Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DNG 101 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDTG 101 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeCC
Confidence 44443 456666888888999999999999999964 345666653 1335799999999
Q ss_pred CCCCHHHHHHhh-hcccCCCC---------CCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635 232 HGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 301 (686)
Q Consensus 232 ~GMt~~eL~~~l-~fG~s~k~---------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 301 (686)
+||++++|...| .++.|... ..+...||+|||||++++| +|++|+|.|++.+. .++.|.+- +...
T Consensus 102 iGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~--g~g~ 176 (281)
T 3peh_A 102 IGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWEST--ADAK 176 (281)
T ss_dssp CCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEE--TTSC
T ss_pred CCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEEC--CCcc
Confidence 999999998876 35544311 2357899999999999877 99999999999874 46777663 3345
Q ss_pred EEEecc---ccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 302 LEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 302 i~VP~~---~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
+.|... ....+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 177 fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~ 227 (281)
T 3peh_A 177 FTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY 227 (281)
T ss_dssp EEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred EEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence 555332 23468999999999765 7888888876 8899999998875
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.83 E-value=7.2e-20 Score=206.87 Aligned_cols=171 Identities=22% Similarity=0.301 Sum_probs=127.4
Q ss_pred eeecCh-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeC
Q 005635 168 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 230 (686)
Q Consensus 168 ~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DN 230 (686)
.++... ..|+.++.+.|+.+..+|+|||+||+||+ ++.+.|.|.. ..+...|+|.||
T Consensus 8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 81 (559)
T 1y4s_A 8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDN 81 (559)
T ss_dssp ECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEEC
Confidence 355555 45677787888889999999999999998 5555565553 123479999999
Q ss_pred CCCCCHHHHHHhh-hcccCCCC----------CCCCCcccccCceeeeeecccCCeEEEEEEeCCC-CceeEEEEEecCC
Q 005635 231 GHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQG 298 (686)
Q Consensus 231 G~GMt~~eL~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~-~s~~~ls~sf~~g 298 (686)
|+||++++|..++ .++.|.+. ..+...||+||+||+++++ +|++|+|.|++.+. ...++.|.+ .+
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g 158 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AG 158 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--CS
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--eC
Confidence 9999999998876 46666432 1256799999999988777 99999999999874 356777776 33
Q ss_pred CeeEEEeccccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 299 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 299 ~~~i~VP~~~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
...+.+...+-..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 159 ~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp SSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 44555543334468999999998753 6666778875 8899999887764
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=7.1e-21 Score=194.97 Aligned_cols=162 Identities=25% Similarity=0.345 Sum_probs=123.2
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCCC-------------------------------------------------
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT------------------------------------------------- 204 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~At------------------------------------------------- 204 (686)
..|..+..+.|+....+|+|||+||.||..+
T Consensus 35 ~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 114 (272)
T 3ied_A 35 KVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKN 114 (272)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------C
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccccccccccC
Confidence 4566668888888999999999999999321
Q ss_pred ---ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCC--------C-CCCCCcccccCceeeeeecc
Q 005635 205 ---KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGFKTGAMR 271 (686)
Q Consensus 205 ---~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k--------~-~~~~~~IG~fGvGfKsA~~~ 271 (686)
.+.|.|.. ......|+|.|||.||++++|.+.|. ++.|.. . ..+...||+|||||++++|
T Consensus 115 ~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm- 187 (272)
T 3ied_A 115 DIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL- 187 (272)
T ss_dssp GGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG-
T ss_pred CCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec-
Confidence 23455542 23467999999999999999998763 444321 1 1357899999999999877
Q ss_pred cCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccc--------cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCC
Q 005635 272 LGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPF 341 (686)
Q Consensus 272 lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~--------~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF 341 (686)
+|++|+|.|+ .+ ..++.|.+ .+...+.|.... ...+||.|+|+++++. +++.++.++. |.+||.|
T Consensus 188 VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~f 262 (272)
T 3ied_A 188 VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEF 262 (272)
T ss_dssp TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTT
T ss_pred cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhC
Confidence 9999999999 32 45788877 455567664332 3468999999999865 7888888876 9999999
Q ss_pred chhhHH
Q 005635 342 NKYLIG 347 (686)
Q Consensus 342 ~s~~I~ 347 (686)
..+||.
T Consensus 263 i~~PI~ 268 (272)
T 3ied_A 263 IKFPIE 268 (272)
T ss_dssp CCSCEE
T ss_pred CCCCeE
Confidence 998774
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.81 E-value=6.8e-21 Score=197.86 Aligned_cols=162 Identities=19% Similarity=0.322 Sum_probs=122.3
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..|+.++.+.|+....+|+|||+||+||++ ..+.|.|.. ..+...|+|.|||+||+++
T Consensus 16 ~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnGiGMt~e 89 (269)
T 1qy5_A 16 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 89 (269)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 455666777888889999999999999975 456666653 1346799999999999999
Q ss_pred HHHHhh-hcccCCC--------C-----CCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEE
Q 005635 238 DVVRMT-YFGHKQP--------D-----ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 303 (686)
Q Consensus 238 eL~~~l-~fG~s~k--------~-----~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~ 303 (686)
+|...| .++.|.. . ..+...||+||+||++++| +|++|+|.|++.+. .++.|.+ .+ ..+.
T Consensus 90 dl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~g-g~~~ 163 (269)
T 1qy5_A 90 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 163 (269)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS-SCEE
T ss_pred HHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--eC-CEEE
Confidence 998876 4555421 0 0356789999999998877 99999999999875 4566755 33 4555
Q ss_pred Eeccc---cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 304 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 304 VP~~~---~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
|.... -..+||.|+|+++.+. +++..+.++. |.+||.|..+||.
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 54322 2358999999998754 5667777765 8899999998875
No 6
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.80 E-value=2.5e-20 Score=190.29 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=116.9
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..++.++.+.|+.+..||+|||+||+||+| ..+.|.|.. ..+...|.|.|||+||+++
T Consensus 20 ~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~DnG~GMt~e 93 (236)
T 2gqp_A 20 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 93 (236)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEECCcCCCHH
Confidence 456666777888899999999999999986 345566542 1235789999999999999
Q ss_pred HHHHhh-hcccCCCC--------C-----CCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEE
Q 005635 238 DVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 303 (686)
Q Consensus 238 eL~~~l-~fG~s~k~--------~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~ 303 (686)
+|...| .++.|.+. . .+...||+||+||+++++ +|++++|.|++.+. .++.|.. .+ ..+.
T Consensus 94 dl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~g-g~~~ 167 (236)
T 2gqp_A 94 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 167 (236)
T ss_dssp HHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCEE
T ss_pred HHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--eC-CEEE
Confidence 998876 46665321 0 345689999999988766 99999999999875 3566655 33 3455
Q ss_pred Eeccc---cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 304 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 304 VP~~~---~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
+.... -..+||.|+++++.+. ++...+.++. |.+|+.|..+||.
T Consensus 168 i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 168 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred EEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 53222 2357999999998654 4556667755 8899999988775
No 7
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.80 E-value=2.2e-20 Score=189.86 Aligned_cols=169 Identities=23% Similarity=0.307 Sum_probs=126.0
Q ss_pred eeecCh-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005635 168 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 230 (686)
Q Consensus 168 ~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~At----------------~I~I~i~~~~~~~~~~~~~~L~I~DN 230 (686)
.+++.- ..|..++.+.|+.+..+|+|||+||+||+++ .+.|.|.. ..+...|.|.||
T Consensus 13 ~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~Dn 86 (228)
T 3t0h_A 13 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDT 86 (228)
T ss_dssp ECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred EEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEEeC
Confidence 344443 5677778888899999999999999999764 46666653 234689999999
Q ss_pred CCCCCHHHHHHhh-hcccCCCC--------CCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635 231 GHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 301 (686)
Q Consensus 231 G~GMt~~eL~~~l-~fG~s~k~--------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 301 (686)
|.||++++|..++ .++.|... ..+...+|+||+||+++++ ++++++|.|++.+. .++.|.. .+...
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~--~g~~~ 161 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAGGS 161 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSTTE
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE--cCCce
Confidence 9999999998766 34443221 1356799999999998866 99999999999763 4677765 33344
Q ss_pred EEEecc--ccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 302 LEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 302 i~VP~~--~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
+.+... .-..+||.|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 162 ~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 162 FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred EEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 555332 23468999999998764 5666667765 8899999888774
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.80 E-value=2.8e-20 Score=191.62 Aligned_cols=169 Identities=23% Similarity=0.305 Sum_probs=125.8
Q ss_pred eeecCh-HHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005635 168 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 230 (686)
Q Consensus 168 ~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~At----------------~I~I~i~~~~~~~~~~~~~~L~I~DN 230 (686)
.++..- ..|..++.+.|+....+|+|||+||+||+++ .+.|.|.. ..+...|+|.||
T Consensus 41 ~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 114 (256)
T 3o0i_A 41 AFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVDT 114 (256)
T ss_dssp ECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred EeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEecC
Confidence 344443 5566778888889999999999999999764 46676653 234689999999
Q ss_pred CCCCCHHHHHHhh-hcccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee
Q 005635 231 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 301 (686)
Q Consensus 231 G~GMt~~eL~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~ 301 (686)
|+||++++|..++ .++.|.. ...+...||+||+||+++++ ++++++|.|++.+. .++.|.+ .+...
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~gg~~ 189 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAGGS 189 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSTTE
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--eccce
Confidence 9999999998766 3444321 11356899999999998876 99999999999763 4777766 33345
Q ss_pred EEEecc--ccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 302 LEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 302 i~VP~~--~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
+.|... .-..+||.|+++++.+. ++...+.++. |.+|+.|..+||.
T Consensus 190 ~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 190 FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 555332 23358999999998754 6667777765 8999999988775
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.79 E-value=7.4e-20 Score=189.67 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=123.4
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..+..++.+.++.+..||+|||+||+||+| +.|.|.|.. ..+...|.|.|||+||+++
T Consensus 56 ~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~e 129 (264)
T 1yc1_A 56 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 129 (264)
T ss_dssp HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCHH
Confidence 456777888888999999999999999987 788888763 1236789999999999999
Q ss_pred HHHHhh-hcccCCCC--------CCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEecc-
Q 005635 238 DVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV- 307 (686)
Q Consensus 238 eL~~~l-~fG~s~k~--------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~- 307 (686)
+|..++ .++.|.+. ..+...||+||+||+++++ ++++++|.|++.+. .++.|... +...+.+...
T Consensus 130 dL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~~ 204 (264)
T 1yc1_A 130 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTDT 204 (264)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEECC
T ss_pred HHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeecC
Confidence 998766 46666432 1356799999999998877 99999999999874 36667653 2234444322
Q ss_pred -ccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 308 -SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 308 -~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
.-...||.|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 205 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 205 GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 12357999999997654 4555666654 8899999988774
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.79 E-value=1.2e-19 Score=183.15 Aligned_cols=163 Identities=22% Similarity=0.294 Sum_probs=120.7
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..++.++.+.++.+..||+|||+||+||+| ..+.|.+.. ..+...|.|.|||+||+++
T Consensus 14 ~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG~GMs~e 87 (220)
T 2wer_A 14 QLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSGIGMTKA 87 (220)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcCCCCCHH
Confidence 466777877888899999999999999987 456666653 1235789999999999999
Q ss_pred HHHHhh-hcccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccc
Q 005635 238 DVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 308 (686)
Q Consensus 238 eL~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~ 308 (686)
+|..++ .++.|.+ ...+...||+||+||+++++ +++++.|.|++.+. .++.|... +...+.+....
T Consensus 88 dl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~~--~~~~~~i~~~~ 162 (220)
T 2wer_A 88 ELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWESN--AGGSFTVTLDE 162 (220)
T ss_dssp HHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEC--SSSEEEEEECS
T ss_pred HHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEeC--CCCceEeeccc
Confidence 998876 5666532 12356799999999987755 99999999999874 35666553 23345443222
Q ss_pred ---cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 309 ---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 309 ---~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
-..+||.|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 163 ~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp SSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred CCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 3357999999998654 4555666665 7899999887764
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.7e-19 Score=203.40 Aligned_cols=168 Identities=22% Similarity=0.294 Sum_probs=126.9
Q ss_pred eecCh-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 005635 169 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 231 (686)
Q Consensus 169 v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~DNG 231 (686)
++..- ..|+.++.+.|+....+|+|||+||+||++ ..+.|.|.. + .+...|+|.|||
T Consensus 8 Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~--d----~~~~~I~I~DnG 81 (677)
T 2cg9_A 8 FQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP--K----PEQKVLEIRDSG 81 (677)
T ss_dssp CCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE--E----GGGTEEEEEECS
T ss_pred hhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE--e----CCCCEEEEEECC
Confidence 45553 566777888888999999999999999973 345555543 1 234789999999
Q ss_pred CCCCHHHHHHhhh-cccCCC--------CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeE
Q 005635 232 HGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 302 (686)
Q Consensus 232 ~GMt~~eL~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i 302 (686)
+||++++|..++. ++.|.+ ...+...||+||+||++|+| ++++|+|.|++.+. .++.|.+ .+...+
T Consensus 82 iGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~~~ 156 (677)
T 2cg9_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSF 156 (677)
T ss_dssp CCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSSEE
T ss_pred CCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCceE
Confidence 9999999998774 555522 12356799999999998866 99999999999874 4777776 344455
Q ss_pred EEecc---ccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 303 EIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 303 ~VP~~---~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
.|... .-..+||.|+++++.+. +++..+.++. |.+||.|..+||.
T Consensus 157 ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~ 206 (677)
T 2cg9_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (677)
T ss_dssp EEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEE
T ss_pred EEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeE
Confidence 55331 23458999999998754 6777788875 8899999998885
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.76 E-value=4.3e-19 Score=180.99 Aligned_cols=165 Identities=22% Similarity=0.318 Sum_probs=119.0
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..+..++...+..+..||+|||+||+||+ ++.+.|.|.. ..+...|.|.|||+||+++
T Consensus 35 ~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG~GMs~e 108 (235)
T 2ior_A 35 QLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNGVGMTRD 108 (235)
T ss_dssp HHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSSCCCHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 34455576777788999999999999998 5556666653 1234679999999999999
Q ss_pred HHHHhh-hcccCCCC----------CCCCCcccccCceeeeeecccCCeEEEEEEeCCCC-ceeEEEEEecCCCeeEEEe
Q 005635 238 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIP 305 (686)
Q Consensus 238 eL~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~-s~~~ls~sf~~g~~~i~VP 305 (686)
+|..++ .+++|.+. ..+...+|+||+||+++ +.++++++|.|++.+.. ..++.|... +...+.+.
T Consensus 109 dl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~~~~~i~ 185 (235)
T 2ior_A 109 EVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GEGEYTVA 185 (235)
T ss_dssp HHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SSSEEEEE
T ss_pred HHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CCCcEEEe
Confidence 998865 57766431 01356899999999877 55999999999998752 456777653 33344443
Q ss_pred ccccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 306 IVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 306 ~~~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
..+-...||.|+++++++. ++.....+.. |.+|+.|..+||.
T Consensus 186 ~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 186 DITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp EECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred eCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 2233458999999998653 4555566654 8899988887664
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.75 E-value=5.3e-19 Score=202.09 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=122.6
Q ss_pred eecCh-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 005635 169 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 231 (686)
Q Consensus 169 v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG 231 (686)
++... ..|+.++.+.|+.+..+|+|||+||+||+ ++.+.|.|.. ..+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 44443 45666777777889999999999999998 6556666653 1234799999999
Q ss_pred CCCCHHHHHHhh-hcccCCCC----------CCCCCcccccCceeeeeecccCCeEEEEEEeCCC-CceeEEEEEecCCC
Q 005635 232 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 299 (686)
Q Consensus 232 ~GMt~~eL~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~-~s~~~ls~sf~~g~ 299 (686)
+||++++|..++ .++.|.+. ..+...||+||+||+++++ +|++|+|.|++.+. ...++.|.+. +.
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~--g~ 159 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--GE 159 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEe--CC
Confidence 999999998876 46665431 1356799999999998777 99999999999873 3567778763 33
Q ss_pred eeEEEeccccCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 300 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 300 ~~i~VP~~~~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
..+.+....-..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3344432233468999999998753 6677778875 8899999887764
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.74 E-value=9.3e-19 Score=200.83 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=109.5
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 174 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 174 ~~L~~lgt~~~~~~~~AIaELIdNS~DA~----------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
..|..++.+.|+.+..+|+|||+||+||+ +..+.|.|.. ..+...|+|.|||+||+++
T Consensus 33 ~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~e 106 (666)
T 2o1u_A 33 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 106 (666)
T ss_dssp -CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHH
Confidence 34555577777888899999999999997 6556666653 1235789999999999999
Q ss_pred HHHHhhh-cccCCC--------CC-----CCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEE
Q 005635 238 DVVRMTY-FGHKQP--------DA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 303 (686)
Q Consensus 238 eL~~~l~-fG~s~k--------~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~ 303 (686)
+|..++. ++.|.+ .. .+...||+||+||+++++ +|++|+|.|++.+. .++.|.+ .+ ..+.
T Consensus 107 dl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~t 180 (666)
T 2o1u_A 107 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 180 (666)
T ss_dssp HHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCE
T ss_pred HHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEE
Confidence 9998763 555422 11 356799999999998866 99999999999875 3667765 33 3444
Q ss_pred Eeccc---cCCCCcEEEEEecCcc-hhhhhhhhhh-hcccCCCchhhHH
Q 005635 304 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 347 (686)
Q Consensus 304 VP~~~---~~~~Gt~I~l~~~~~s-e~~~~~~l~~-I~kySpF~s~~I~ 347 (686)
|.... -..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 43222 2358999999998754 6666778865 8899999987764
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.68 E-value=1.9e-17 Score=137.98 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.2
Q ss_pred cCCCCCCCceecCc--cchhhccCCCCCCCCCCCCCceeccCCC--CCCCCCCcccccC
Q 005635 569 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 623 (686)
Q Consensus 569 ~~~~~~~~~wvQCd--~C~KWR~lp~~~~~~~lp~~W~C~~n~~--~~~C~~pEe~~~~ 623 (686)
+.......+||||| +|+|||+||.++++..+|++|||+||++ +++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 34456688999999 9999999999999888999999999997 5999999998874
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=7.8e-17 Score=142.99 Aligned_cols=61 Identities=18% Similarity=0.491 Sum_probs=51.5
Q ss_pred cCCCCCCCceecCccchhhccCCCCCC-CCCCCCCceeccCCC--CCCCCCCcccccCCceeec
Q 005635 569 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVVTVS 629 (686)
Q Consensus 569 ~~~~~~~~~wvQCd~C~KWR~lp~~~~-~~~lp~~W~C~~n~~--~~~C~~pEe~~~~~~~~~~ 629 (686)
+..+.+..+|||||+|+|||+||.++. ...+|++|||+|||+ +++|++|||.+++++..+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~~~l 82 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINEEL 82 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHHHHh
Confidence 445667899999999999999998764 356899999999997 6999999999988765543
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.45 E-value=2.3e-13 Score=145.27 Aligned_cols=141 Identities=19% Similarity=0.267 Sum_probs=100.2
Q ss_pred cceeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 166 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 166 ~~~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
|.+..+++...+.+ +...+..+..+|+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 55777999988888 444457899999999999999999999998872 2346899999999999999999874
Q ss_pred -cccCCCCC----CCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCe-eEEEeccccCCCCcEEEE
Q 005635 245 -FGHKQPDA----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYYRKGQFMEL 318 (686)
Q Consensus 245 -fG~s~k~~----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~-~i~VP~~~~~~~Gt~I~l 318 (686)
|+++.... .....+|.+|+|+.+.+ .++ +++|.|++.+.. .++.+ +.+|.. .+.+ .+.-..+||.|++
T Consensus 76 ~~~tsK~~~~~d~~~~~~~G~~G~gl~si~-~vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~-~~~~~~~GT~V~v 149 (333)
T 1b63_A 76 RHATSKIASLDDLEAIISLGFRGEALASIS-SVS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTV-KPAAHPVGTTLEV 149 (333)
T ss_dssp TTCCSSCCSHHHHHTCCSSCCSSCHHHHHH-TTS-EEEEEEECTTCS-SEEEE--EEETTTTEEEE-EEECCCSEEEEEE
T ss_pred cccccCccccchhhhccccCccccchhhhh-cCC-cEEEEEecCCCc-eEEEE--EEcCCcceEee-ecccCCCCCEEEE
Confidence 55542211 02357899999995543 366 899999998753 23322 333332 2221 1123458999987
Q ss_pred E
Q 005635 319 D 319 (686)
Q Consensus 319 ~ 319 (686)
.
T Consensus 150 ~ 150 (333)
T 1b63_A 150 L 150 (333)
T ss_dssp E
T ss_pred e
Confidence 4
No 18
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.43 E-value=2.7e-12 Score=139.81 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=186.6
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA---~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++++.+| +||.+.+... .+..++.||||||+|| + |+.|.|.|.. ...|+|.|||.||+
T Consensus 10 ~~L~gle~vrkRPgmYiGst~~~~--gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp 78 (391)
T 1ei1_A 10 KVLKGLDAVRKRPGMYIGDTDDGT--GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIP 78 (391)
T ss_dssp EECCTTHHHHHCTHHHHCCSSSSH--HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCC
T ss_pred EECchhHHHHcCCCeEECCCCCCc--CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcc
Confidence 5677889999999 8997765431 4889999999999999 5 9999998862 24899999999999
Q ss_pred HHH--------HHHhhh-c--ccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCe--eE
Q 005635 236 HQD--------VVRMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL 302 (686)
Q Consensus 236 ~~e--------L~~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~--~i 302 (686)
.++ +.-+|. + |.+........+.|..|+|+.++. .|+..++|.|++++. .+.+.|..|.. .+
T Consensus 79 ~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vn-alS~~l~v~~~r~g~----~~~~~~~~G~~~~~l 153 (391)
T 1ei1_A 79 TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREGK----IHRQIYEHGVPQAPL 153 (391)
T ss_dssp CSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEESSCC
T ss_pred cCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHH-HhcCeEEEEEEeCCc----EEEEEEcCCcccccc
Confidence 987 333443 2 222222223457799999995554 489999999998762 45566755421 11
Q ss_pred EEeccccCCCCcEEEEEecCcchhhhhhhhhhhccc-CCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCC
Q 005635 303 EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF-SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNG 381 (686)
Q Consensus 303 ~VP~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~ky-SpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLDF~~d 381 (686)
.+- ..-...||.|++.++.+ |++- ..|....|.+.++.+...+.|.+|.+.+.+.. .+..|.
T Consensus 154 ~~~-~~~~~~GT~V~f~Pd~~-----------~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~---~~~~f~-- 216 (391)
T 1ei1_A 154 AVT-GETEKTGTMVRFWPSLE-----------TFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG---KEDHFH-- 216 (391)
T ss_dssp EEE-EECSCCEEEEEEEECTT-----------TCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC---CEEEEC--
T ss_pred eec-cCcCCCccEEEEEEChh-----------hhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc---ceEEEE--
Confidence 110 11246899999886543 3322 33444455666666666688999998866420 000111
Q ss_pred CCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccCceeeecccccce
Q 005635 382 LNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGK 461 (686)
Q Consensus 382 ~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Prm~I~LnG~~V~~~~i~~~L~~~~v~~~~~~~~ 461 (686)
+.-.|++|+..|+-... .+....+ .+.++..+.
T Consensus 217 -------------------------------~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~i 249 (391)
T 1ei1_A 217 -------------------------------YEGGIKAFVEYLNKNKT--------PIHPNIF--------YFSTEKDGI 249 (391)
T ss_dssp -------------------------------CCSHHHHHHHHHHHTSC--------BSSSCCE--------EEEEEETTE
T ss_pred -------------------------------cCchHHHHHHHHcCCCc--------ccccccE--------EEEEecCCE
Confidence 11148888886642210 0100111 011111123
Q ss_pred EEEEEEceecccccceeceEEEEEcCceeeee-eee------------------------cccccCCCCCccEEEEEecC
Q 005635 462 SAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAY-KRV------------------------GGMIHNGDTGRGVIGVIDVS 516 (686)
Q Consensus 462 ~V~It~Gf~~~e~~~~~~Gi~vY~nnRLI~~~-~kV------------------------g~q~~~~~~grGVIGVve~~ 516 (686)
.|++.+.++. .....++.|.|||-+.-+ -.+ ...+.+..--.|...||.+-
T Consensus 250 ~veva~~~~~----~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvk 325 (391)
T 1ei1_A 250 GVEVALQWND----GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 325 (391)
T ss_dssp EEEEEEEEBS----SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEE
T ss_pred EEEEEEEccC----CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHHhhccEEEEEEe
Confidence 4555555542 123457899999988643 000 00111111234788888773
Q ss_pred CccccCCCceecccCCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 005635 517 DLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 559 (686)
Q Consensus 517 ~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~ 559 (686)
+++| .|+ ..+|.-.-.+..-......+.+.+..|..+|
T Consensus 326 --i~~P--~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 363 (391)
T 1ei1_A 326 --VPDP--KFS-SQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 363 (391)
T ss_dssp --CSSC--CBS-STTCCSBCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --cCCC--CcC-CcccccccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3322 343 4666666666677778888889998888663
No 19
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.41 E-value=1.1e-12 Score=141.79 Aligned_cols=313 Identities=11% Similarity=0.059 Sum_probs=176.8
Q ss_pred eeccCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCC
Q 005635 158 VKQAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGH 232 (686)
Q Consensus 158 ~~~~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~ 232 (686)
.++.....++++|.+| +||.+.+. ..+..++.||||||+|| +|+.|.|.|.. ...|+|.|||.
T Consensus 4 ~~~l~~~~lE~vrkRPgmYiGs~~~---~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---------~g~I~V~DnGr 71 (369)
T 3cwv_A 4 GMHLPGGIVENVRKRPGMYCGDVGE---YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---------DGSIALFCTSR 71 (369)
T ss_dssp -----CCHHHHHHHSTHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEEEES
T ss_pred cccCCccHhHHHHhCCceEEcCCCC---chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---------CCEEEEEECCC
Confidence 4555566689999999 89976643 35889999999999998 79999999862 23899999999
Q ss_pred CCCHHHHHHhhhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCee----EEEe---
Q 005635 233 GMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN----LEIP--- 305 (686)
Q Consensus 233 GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~----i~VP--- 305 (686)
||+. |+.-.+.-|.+..........+.-| |.++. -.|+..++|.|++++. .+.+.|..|... -.-|
T Consensus 72 GIp~-e~v~~lhagsKf~~~~~~~~y~vsG-Gls~v-nalSs~l~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~l~~ 144 (369)
T 3cwv_A 72 TVTA-ENLVRVATGAGFLGRPPGDGWGWDS-MLVVS-LALSSRYQVDIWADGR----QWRVMGEHGHPQGEGAAVTPMEP 144 (369)
T ss_dssp SCCH-HHHHHHHTTTTGGGSSCCCSTTTTS-SHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEECTTCEEESSCCC
T ss_pred CcCH-hHeeeeecCCCcCCCcccccccccC-HHHHH-HHhhceEEEEEEECCC----EEEEEEeCCcccccccccCCceE
Confidence 9999 4332332333322111001122225 76433 4488999999998764 355666554210 0111
Q ss_pred ccccCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCCCCCC
Q 005635 306 IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGG 385 (686)
Q Consensus 306 ~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLDF~~d~~~~ 385 (686)
+......||.|++.++.+ +++-..|....|.+.++.+.....|..|.+.+-+.. .+..|.
T Consensus 145 ~g~~~~~GT~V~f~Pd~~-----------~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~---~~~~f~------ 204 (369)
T 3cwv_A 145 MPVSAERGVRVHFVPDAT-----------IFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRG---ERTLWH------ 204 (369)
T ss_dssp CSSCCSEEEEEEEEECTT-----------TCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT---EEEEEE------
T ss_pred ecccCCCCCEEEEEECHH-----------HhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC---eeEEEE------
Confidence 112235789998876543 222233444455666666665678988888765410 000110
Q ss_pred CCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccCceeeecccccceEEEE
Q 005635 386 SSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHL 465 (686)
Q Consensus 386 ~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Prm~I~LnG~~V~~~~i~~~L~~~~v~~~~~~~~~V~I 465 (686)
+.-.|++|+..|+=... .+....+ .+..+..+..+++
T Consensus 205 ---------------------------~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~i~ve~ 241 (369)
T 3cwv_A 205 ---------------------------LPGGVAQWAHVLTEARP--------QLHPEPV--------VFDFTWDGLRVQC 241 (369)
T ss_dssp ---------------------------CTTHHHHHHHHHHTTSC--------BSSSSCE--------EEEEEETTEEEEE
T ss_pred ---------------------------eCchHHHHHHHHhcCCc--------ccCCCcE--------EEEEecCCEEEEE
Confidence 11157888886652110 0100111 0111111234555
Q ss_pred EEceecccccceeceEEEEEcCceeeee-------------------eeecccccCCCCCccEEEEEecCCccccCCCce
Q 005635 466 TLGRCQLEWEQMNCGIFLYWHGRLIEAY-------------------KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLV 526 (686)
Q Consensus 466 t~Gf~~~e~~~~~~Gi~vY~nnRLI~~~-------------------~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~ 526 (686)
.+.++. .....++.|.|||-+.-+ .+-...+.+..--.|+..||.+. +.+ |...|
T Consensus 242 a~~~~~----~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk-~~~-P~~~F 315 (369)
T 3cwv_A 242 ALQWCE----DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVS-GPR-RQMAF 315 (369)
T ss_dssp EEEEBS----SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEE-CCG-GGCCB
T ss_pred EEEecC----CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEec-cCC-cchhc
Confidence 555542 123567899999998642 00011111112234788888773 323 21114
Q ss_pred ecccCCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 005635 527 WVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 559 (686)
Q Consensus 527 ~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~ 559 (686)
+ ..+|.-.-........+..+.+.+..|..++
T Consensus 316 e-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 316 A-GPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp S-STTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred c-ccccchhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 4667767677777888899999999998764
No 20
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.40 E-value=2.5e-13 Score=135.40 Aligned_cols=173 Identities=19% Similarity=0.198 Sum_probs=106.8
Q ss_pred cceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH-
Q 005635 166 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV- 239 (686)
Q Consensus 166 ~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA---~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL- 239 (686)
+++||.+| +|+.+.+ +..++.|||+||+|| + |+.|.|.+.. ...|+|.|||.||+.+++
T Consensus 2 le~vr~rpgmyig~~~------~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~ 66 (201)
T 3fv5_A 2 LEPVRRRPGMYTDTTR------PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHP 66 (201)
T ss_dssp CHHHHHCGGGTSCTTS------THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCT
T ss_pred chhhccCCccEECCCC------hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCccccc
Confidence 56788888 8886522 468999999999999 5 9999998852 248999999999999883
Q ss_pred -------HHhhh-c--ccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEec-cc
Q 005635 240 -------VRMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VS 308 (686)
Q Consensus 240 -------~~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~-~~ 308 (686)
..++. . +.+..........|..|+|+.+.+. ++..++|.|++++. .+.+.|..|.....++. ..
T Consensus 67 ~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssina-lS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~ 141 (201)
T 3fv5_A 67 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA-LSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGT 141 (201)
T ss_dssp TCSSBHHHHHHHCC---------------------CHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEE
T ss_pred ccCcchhheeeeeeccccCcCCCcccccCcccceecchhhc-ccceEEEEEEecCc----eEEEEEeCCEEcccceeccc
Confidence 33232 2 2222221123468999999955544 88999999998764 35677766543222222 12
Q ss_pred c--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 309 Y--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 309 ~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
. ...||.|++.+... +++-..|....|.+.++.+.....|..|.+.+.+.
T Consensus 142 ~~~~~~GT~V~f~Pdr~-----------~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~ 193 (201)
T 3fv5_A 142 CGKRNTGTSVHFWPDET-----------FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN 193 (201)
T ss_dssp CCTTCCEEEEEEEECGG-----------GSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTT
T ss_pred CCCCCCCeEEEEEECHH-----------HcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 2 45899999876432 33333444445566666666668999999987753
No 21
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.5e-13 Score=145.62 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=107.7
Q ss_pred eeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 005635 168 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 245 (686)
Q Consensus 168 ~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-f 245 (686)
+..+++..++++ +...+..+..+|.|||+||+||+|+.|.|.+. ..+...|.|.|||+||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 556888888888 44555789999999999999999999999885 23467999999999999999988764 3
Q ss_pred ccCC-CCCCC---CCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEec-CCCeeEEEeccccCCCCcEEEEEe
Q 005635 246 GHKQ-PDADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYYRKGQFMELDT 320 (686)
Q Consensus 246 G~s~-k~~~~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~-~g~~~i~VP~~~~~~~Gt~I~l~~ 320 (686)
.++. ...++ ....|..|.|+.+.+ .++ +++|.|++.+ ..++.+. |. .|. +..+.+.-...||.|++.-
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si~-avS-~l~V~sr~~~--~~~~~~~-~~~~G~--~~~~~~~~~~~GTtV~v~~ 151 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSLC-GIA-KLSVITTTSP--PKADKLE-YDMVGH--ITSKTTTSRNKGTTVLVSQ 151 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHHH-HSS-EEEEEEESST--TCEEEEE-ECTTCC--EEEEEEECCSSEEEEEEES
T ss_pred ccCcCCchhhhhhhhccCccchHHHHhh-ccC-EEEEEEEECC--CCEEEEE-EcCCCc--EEeeccccCCCCeEEEEch
Confidence 3332 22222 345688899985544 477 6999999987 3444333 32 333 2222223346899998841
Q ss_pred cCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcc
Q 005635 321 VVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNL 367 (686)
Q Consensus 321 ~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL 367 (686)
- .+-.....+..++-..+....|.+.++.+.....|..+.+.+.
T Consensus 152 L---F~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~ 195 (367)
T 3h4l_A 152 L---FHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNI 195 (367)
T ss_dssp T---TTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred h---hccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEc
Confidence 0 0000001110001000011233444445554578999988765
No 22
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.37 E-value=3.6e-13 Score=136.10 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=117.9
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
+.+.+++++|.+| +||.+.+.. ..+..++.|||+||+|| .|+.|.|.|.. ...|+|.|||.||+
T Consensus 11 ~~l~~le~vr~rPgmYiG~~~~~--~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp 79 (220)
T 4duh_A 11 KVLKGLDAVRKRPGMYIGDTDDG--TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIP 79 (220)
T ss_dssp ----CHHHHHHSTHHHHCCSSSS--HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCC
T ss_pred EEechhHHHHhCCceEECCCCCc--ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcc
Confidence 5677889999999 899876553 24889999999999999 89999998862 24799999999999
Q ss_pred HHHH--------HHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQDV--------VRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~eL--------~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+.. .-+|. -|.+........+.|..|+|.+.+.. |+..+.|.+++++. .+.+.|..|...-.+
T Consensus 80 ~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNA-lS~~l~v~v~r~g~----~~~~~f~~G~~~~~l 154 (220)
T 4duh_A 80 TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA-LSQKLELVIQREGK----IHRQIYEHGVPQAPL 154 (220)
T ss_dssp CSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEESSSC
T ss_pred cccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcc-cccceEEEEEECCE----EEEEEecCCcCcCCc
Confidence 9863 22332 23332222234678999999955544 99999999998774 456777654321101
Q ss_pred -eccccCCCCcEEEEEecCcchhhhhhhhhhhcccC-CCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 305 -PIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFS-PFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 305 -P~~~~~~~Gt~I~l~~~~~se~~~~~~l~~I~kyS-pF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
++..-...||.|++.++.+ |+.-. .|....|.+.++.+...+.|.+|.+.+.+.
T Consensus 155 ~~~g~~~~~GT~V~F~Pd~~-----------~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 155 AVTGETEKTGTMVRFWPSLE-----------TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp EEEEECSCCEEEEEEEECTT-----------TCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred eeccccCCCCcEEEEEECHH-----------HhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 1112356899999987543 33222 355555666666666668999999998763
No 23
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.36 E-value=7.6e-13 Score=134.22 Aligned_cols=183 Identities=18% Similarity=0.155 Sum_probs=122.4
Q ss_pred eccCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCC
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHG 233 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~G 233 (686)
..+.+.++++++.+| +||.+.+. ..+..++.|||+||+|+ .++.|.|.+.. ...|+|.|||.|
T Consensus 15 ~i~~l~~le~vr~RPgmYiGs~~~---~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~G 82 (226)
T 4emv_A 15 AIQVLEGLDAVRKRPGMYIGSTDG---AGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRG 82 (226)
T ss_dssp --CCCBCTHHHHHCHHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSC
T ss_pred hcEEcchhHHHhhCCceEEcCCCc---ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCC
Confidence 345678899999999 89987653 24788999999999999 88999988762 248999999999
Q ss_pred CCHHH-------HHHhhh-c--ccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCC-CeeE
Q 005635 234 MTHQD-------VVRMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KDNL 302 (686)
Q Consensus 234 Mt~~e-------L~~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g-~~~i 302 (686)
|+.+. +.-+|. + |.+........+-|..|+|.+.+. .|+..+.|.+++++. .+.+.|..| ...-
T Consensus 83 Ip~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-ALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~ 157 (226)
T 4emv_A 83 MPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN-ALSSWLEVEITRDGA----VYKQRFENGGKPVT 157 (226)
T ss_dssp CCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHH-HTEEEEEEEEEETTE----EEEEEEETTTEESS
T ss_pred ccccccccCceehheeEEeecccCccCccceEeccccccccchhhh-hcccceEEEEEeCCc----EEEEEECCCCEEcC
Confidence 99987 444453 2 222222223567899999995554 499999999998774 456777655 2211
Q ss_pred EEe-cccc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 303 EIP-IVSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 303 ~VP-~~~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
.++ +.+. ...||.|++.++.+ |++-..|....|.+.++.++..+.|.+|.+.+.+.
T Consensus 158 ~l~~ig~~~~~~~GT~V~F~PD~~-----------iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 158 TLKKIGTALKSKTGTKVTFMPDAT-----------IFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp CSEEEEECCTTCCEEEEEEEECTT-----------TCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred CceEecccCCCCCCeEEEEEECHH-----------HcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 111 1122 46899999987654 33334455555666666666668999999998763
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.32 E-value=2.4e-12 Score=139.11 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred eeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 005635 168 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 245 (686)
Q Consensus 168 ~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-f 245 (686)
+..+++..++++ +...+..+..+|+|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 556888888888 445557899999999999999999999998862 2356899999999999999988764 5
Q ss_pred ccCCCCC-CCC---CcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEec-CCCeeEEEeccccCCCCcEEEEE
Q 005635 246 GHKQPDA-DDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYYRKGQFMELD 319 (686)
Q Consensus 246 G~s~k~~-~~~---~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~-~g~~~i~VP~~~~~~~Gt~I~l~ 319 (686)
.++.... .+. ...|.+|+|+.+.++ ++ +++|.|++.+.. .++.+ +|. .|. +..+.+.-..+||.|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~~-~~~~~-~~~~~G~--~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASAK-VGTRL-MFDHNGK--IIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTCS-SCEEE-EECTTSC--EEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCCc-ceEEE-EEcCCCc--eEeecccCCCCCcEEEEe
Confidence 4442211 222 357999999955444 77 999999998753 23333 333 332 322222334589999885
No 25
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.32 E-value=1.5e-11 Score=134.00 Aligned_cols=310 Identities=15% Similarity=0.090 Sum_probs=178.6
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA~----At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++++.+| +|+.+.+. ..+...|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+
T Consensus 9 ~~l~~le~vr~rpgmyiGs~~~---~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp 76 (390)
T 1kij_A 9 RVLKGLEGVRHRPAMYIGGTGV---EGYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIP 76 (390)
T ss_dssp EECCTTHHHHHCTHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCC
T ss_pred EEcchhHHHhcCCCcEEccCCc---chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCC
Confidence 4567789999999 88876543 246789999999999995 8888888752 24899999999999
Q ss_pred HHHHHH--------hhh-cccCCC--CCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQDVVR--------MTY-FGHKQP--DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~eL~~--------~l~-fG~s~k--~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+++.. +|. |....+ ........|..|+|++.+. .++..+.|.|++++. .+.+.|..|.....+
T Consensus 77 ~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g~----~~~~~~~~G~~~~~~ 151 (390)
T 1kij_A 77 VDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREGK----HHRIAFSRGEVTEPL 151 (390)
T ss_dssp CSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEE
T ss_pred HHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCCc----EEEEEEcCCcccccc
Confidence 998754 443 211111 1111235689999995554 489999999997663 355566555321112
Q ss_pred -ecccc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCC
Q 005635 305 -PIVSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNG 381 (686)
Q Consensus 305 -P~~~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLDF~~d 381 (686)
++... ..+||.|++.++.+ +++-..|....|.+.+..+...+.|..|.+.+.+.. .+..|.
T Consensus 152 ~~~~~~~~~~~GT~V~f~Pd~~-----------~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~---~~~~f~-- 215 (390)
T 1kij_A 152 RVVGEAPRGKTGTRVTFKPDPE-----------IFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG---KEEVFL-- 215 (390)
T ss_dssp EEEEECGGGCCEEEEEEEECHH-----------HHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT---EEEEEC--
T ss_pred eeeccccCCCCCcEEEEEEChH-----------HhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc---ceEEEE--
Confidence 12222 45788888865422 121122333345555555555578888888765420 000110
Q ss_pred CCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeeecccccccccCceeeecccccce
Q 005635 382 LNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGK 461 (686)
Q Consensus 382 ~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Prm~I~LnG~~V~~~~i~~~L~~~~v~~~~~~~~ 461 (686)
+.-.|++|+..|+=.. ..+...++ .+.++..+.
T Consensus 216 -------------------------------~~~Gl~~~v~~l~~~~--------~~~~~~~i--------~~~~~~~~i 248 (390)
T 1kij_A 216 -------------------------------DKGGVASFAKALAEGE--------DLLYEKPF--------LIRGTHGEV 248 (390)
T ss_dssp -------------------------------CTTHHHHHHHHHTTTS--------CBSCSSCE--------EEEEEETTE
T ss_pred -------------------------------cCCcHHHHHHHHhCCC--------CcCCCCcE--------EEEeecCCe
Confidence 1115778887654211 00100111 111111123
Q ss_pred EEEEEEceecccccceeceEEEEEcCceeeeee-------------------e------ecccccCCCCCccEEEEEecC
Q 005635 462 SAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYK-------------------R------VGGMIHNGDTGRGVIGVIDVS 516 (686)
Q Consensus 462 ~V~It~Gf~~~e~~~~~~Gi~vY~nnRLI~~~~-------------------k------Vg~q~~~~~~grGVIGVve~~ 516 (686)
.+++.+.++. .....++.|.|||-+.-+- + -...+.+..--.|+..||.+.
T Consensus 249 ~ve~a~~~~~----~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~~dvregl~avisvk 324 (390)
T 1kij_A 249 EVEVGFLHTQ----GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVK 324 (390)
T ss_dssp EEEEEEEEBS----SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEEEEEEEE
T ss_pred EEEEEEEecC----CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCHHHHhhhcEEEEEee
Confidence 4555555532 1134578999999886421 0 001112223345888888774
Q ss_pred CccccCCCceecccCCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 005635 517 DLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 559 (686)
Q Consensus 517 ~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~ 559 (686)
+.+ | .|+ ..+|.-.-.......+...+.+.+..|..+|
T Consensus 325 -i~~-P--~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 362 (390)
T 1kij_A 325 -LPN-P--QFE-GQTKGKLLNPEAGTAVGQVVYERLLEILEEN 362 (390)
T ss_dssp -CSS-C--CBC-STTCCSBCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -cCC-C--ccc-ccccccccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 323 2 243 4566666666666777788888888888653
No 26
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.29 E-value=3.3e-12 Score=139.11 Aligned_cols=304 Identities=15% Similarity=0.067 Sum_probs=184.8
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++++.+| +||.+.+. ..++.|||+||+|| .|+.|.|.|.. ...|+|.|||.||+
T Consensus 11 ~~L~gle~vr~RPgmYiGs~~~------~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp 75 (390)
T 1s16_A 11 EVLTGLEPVRRRPGMYTDTTRP------NHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMP 75 (390)
T ss_dssp EECCTTHHHHHCGGGTSCTTST------HHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCC
T ss_pred EEcchhHHHhhCCceeecCCcH------HHHHHHHHHHHHHHHhcCCCCEEEEEEec---------CCEEEEEECCCCcC
Confidence 5677889999999 89877655 46999999999999 49999998862 23899999999999
Q ss_pred HHH--------HHHhhh-c--ccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQD--------VVRMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~e--------L~~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.++ +..+|. + |.+........+.|..|+|+.++. .|+..++|.|++++. .+.+.|..|...-.+
T Consensus 76 ~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vn-alS~~l~v~~~r~g~----~~~~~~~~G~~~~~~ 150 (390)
T 1s16_A 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDGQ----VYNIAFENGEKVQDL 150 (390)
T ss_dssp CSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEE
T ss_pred cccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHH-HhhcccEEEEEECCc----EEEEEEeCCcccccc
Confidence 888 555553 2 222222222447799999995554 489999999998652 456677665322112
Q ss_pred e-ccccC--CCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCC
Q 005635 305 P-IVSYY--RKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNG 381 (686)
Q Consensus 305 P-~~~~~--~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLDF~~d 381 (686)
. +.... ..||.|++.++.+ +++-..|....|.+.++.+.....|..|.+.+.+.. .+..|.
T Consensus 151 ~~~g~~~~~~~GT~V~f~Pd~~-----------~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~---~~~~f~-- 214 (390)
T 1s16_A 151 QVVGTCGKRNTGTSVHFWPDET-----------FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN---TEQRWC-- 214 (390)
T ss_dssp EEEEECCTTCCEEEEEEEECGG-----------GSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT---EEEEEC--
T ss_pred eecccccCCCCceEEEEEECcc-----------ccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc---eeEEEE--
Confidence 1 22333 5899999886543 232233444455666666666688999999866420 001111
Q ss_pred CCCCCCCCCCCeEeecccccCCCCcccccCcchhhHHHHHhhhhcCCC-e---EEEEcCeeecccccccccCceeeeccc
Q 005635 382 LNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR-M---KIYVQGSLVRSRPLAKSLNKTCVETGI 457 (686)
Q Consensus 382 ~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~Pr-m---~I~LnG~~V~~~~i~~~L~~~~v~~~~ 457 (686)
+.-.|++|+..|+=... + -|++.| +
T Consensus 215 -------------------------------~~gGl~~~v~~l~~~~~~~~~~~i~~~~--------------------~ 243 (390)
T 1s16_A 215 -------------------------------YQDGLNDYLAEAVNGLPTLPEKPFIGNF--------------------A 243 (390)
T ss_dssp -------------------------------CSSCHHHHHHHHHTTSCCEEEEEEEEEE--------------------E
T ss_pred -------------------------------cCCcHHHHHHHHhCCCcccCCCcEEEEE--------------------e
Confidence 11147888887653211 1 111111 1
Q ss_pred ccceEEEEEEceecccccceeceEEEEEcCceeeeee-ee--------------c---cccc--CCCC----CccEEEEE
Q 005635 458 IMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYK-RV--------------G---GMIH--NGDT----GRGVIGVI 513 (686)
Q Consensus 458 ~~~~~V~It~Gf~~~e~~~~~~Gi~vY~nnRLI~~~~-kV--------------g---~q~~--~~~~----grGVIGVv 513 (686)
..+..+++.+.+..+ .....++.|.|||-+.-+- .+ . ..++ .+.. -.|+..||
T Consensus 244 ~~~~~ve~a~~~~~~---~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avi 320 (390)
T 1s16_A 244 GDTEAVDWALLWLPE---GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVL 320 (390)
T ss_dssp CSSEEEEEEEEECTT---CCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEE
T ss_pred eCCEEEEEEEEeccC---CCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEE
Confidence 112345555554211 1234578999999886420 00 0 0000 0011 23778888
Q ss_pred ecCCccccCCCceecccCCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 005635 514 DVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 559 (686)
Q Consensus 514 e~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~ 559 (686)
.+- +++| .|+ ..+|.-.-...........+.+.+..|..++
T Consensus 321 svk--i~~P--~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 321 SVK--MQDP--QFA-GQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp EEE--ESSC--CBS-STTCCCBCCTHHHHHHHHHHHHHHHHHHHTC
T ss_pred Eee--cCCC--Ccc-ccccchhcChhHHHHHHHHHHHHHHHHHHHC
Confidence 773 3322 343 4667666666677778888889998888653
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.27 E-value=6.2e-12 Score=134.99 Aligned_cols=140 Identities=20% Similarity=0.306 Sum_probs=94.9
Q ss_pred eeecChHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-c
Q 005635 168 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 245 (686)
Q Consensus 168 ~v~l~p~~L~~l-gt~~~~~~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-f 245 (686)
+..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+.. .+...|.|.|||+||+++++..++. |
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 567899999988 445557899999999999999999999999862 2346799999999999999988765 3
Q ss_pred ccCC-CCCCC---CCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEeccccCCCCcEEEEE
Q 005635 246 GHKQ-PDADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 319 (686)
Q Consensus 246 G~s~-k~~~~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP~~~~~~~Gt~I~l~ 319 (686)
.++. ...++ ....|..|.|+.+.+ .++ +++|.|++.+... ++. ..|..|.....+ .+.-...||.|++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si~-avs-~l~v~sr~~~~~~-~~~-~~~~~G~~~~~~-~~~~~~~GTtV~v~ 154 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASIS-HVA-HVTITTKTADGKC-AYR-ASYSDGKLKAPP-KPCAGNQGTQITVE 154 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHHH-HSS-EEEEEEECTTCSS-EEE-EEEETTEESSCC-EEECCCSEEEEEEE
T ss_pred cccccCcchhhhccccCCcCChHHHHhh-ccc-EEEEEEEECCCCc-eEE-EEEeCCEEeeee-eEecCCCCcEEEEC
Confidence 3322 22122 356799999995444 477 8999999987533 322 233333211000 11224579999874
No 28
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.22 E-value=4.9e-12 Score=138.19 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=110.8
Q ss_pred cCCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCC
Q 005635 161 AGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 235 (686)
Q Consensus 161 ~~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA----~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt 235 (686)
..+.++++||.+| +||.+.+. ...+.|+||||+|+ .++.|.|.|.. ...|+|.|||.||+
T Consensus 30 ~vL~glE~VRkRPgMYiGst~~------~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIP 94 (408)
T 3lnu_A 30 EVLSGLDPVKRRPGMYTDTARP------NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMP 94 (408)
T ss_dssp ----CCHHHHHCGGGTSCTTST------HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCC
T ss_pred eeccccHHHhcCCccEECCCCc------chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCC
Confidence 4577899999999 89977543 57999999999999 89999998862 24899999999999
Q ss_pred HHHH--------HHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEE
Q 005635 236 HQDV--------VRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 304 (686)
Q Consensus 236 ~~eL--------~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~V 304 (686)
.+.. .-+|. -|.+........+-|..|+|.+.+. .|+..+.|.++++|. .+.+.|..|...-.+
T Consensus 95 v~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVN-ALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l 169 (408)
T 3lnu_A 95 VDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN-ALSTKVELFIKREGS----EHRMEFRDGNAASKL 169 (408)
T ss_dssp CSBCTTTCSBHHHHHHHCC--------------------CHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEECSCC
T ss_pred cccccccCCcchheEEEecccCCCcCCCceeecCCccccccceeh-hccCeEEEEEEECCE----EEEEEECCCEECCCc
Confidence 8763 22342 2332222223467799999995554 499999999998874 466777655321111
Q ss_pred e-cccc--CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 305 P-IVSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 305 P-~~~~--~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
+ +.+. ...||.|++.++.+ |++-.-|....|..+++.+...+.|.+|.+.+.+
T Consensus 170 ~~ig~~~~~~~GT~V~F~PD~~-----------iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der 225 (408)
T 3lnu_A 170 EVVGTVGKKNTGTRLRFWADPK-----------YFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEA 225 (408)
T ss_dssp EEEEECCTTCCEEEEEEEECGG-----------GSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred eEeccCcCCCCCcEEEEEECHH-----------HhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence 1 1122 35799999987644 4443445555566666666667899999998764
No 29
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.18 E-value=1.2e-11 Score=135.00 Aligned_cols=188 Identities=12% Similarity=0.158 Sum_probs=123.9
Q ss_pred eccCCCCcceeecCh-HHHHHhhcc-------------------ccCCHHHHHHHHHhcccccC-----CCccEEEEEec
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQA-------------------HSGWIFGAIAELVDNSRDAK-----ATKLEISIESI 213 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~-------------------~~~~~~~AIaELIdNS~DA~-----At~I~I~i~~~ 213 (686)
.+..+.++++|+.+| +||.+.+.. +...+..++.||||||+||. ++.|.|.|..
T Consensus 5 ~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~- 83 (400)
T 1zxm_A 5 IYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP- 83 (400)
T ss_dssp HSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-
T ss_pred hheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC-
Confidence 356778899999999 899877531 12468899999999999997 8999998872
Q ss_pred eeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEe
Q 005635 214 YFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQT 282 (686)
Q Consensus 214 ~~~~~~~~~~~L~I~DNG~GMt~~e--------L~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~ 282 (686)
+...|+|.|||.||+.+. +.-+|. -|.+........+.|..|+|.+++. .|+..++|.+++
T Consensus 84 -------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVn-AlS~~l~v~v~~ 155 (400)
T 1zxm_A 84 -------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCN-IFSTKFTVETAS 155 (400)
T ss_dssp -------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHH-HTEEEEEEEEEE
T ss_pred -------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeE-EeccceEEEEec
Confidence 126999999999999886 344443 2333222122447899999995554 499999999987
Q ss_pred CCCCceeEEEEEecCCCeeEEEe-cccc-CCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhh---HHHHhhhcccCC
Q 005635 283 ADSRSIAFLSQSLNQGKDNLEIP-IVSY-YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKAGLFQDKC 357 (686)
Q Consensus 283 ~g~~s~~~ls~sf~~g~~~i~VP-~~~~-~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~---I~e~~~~~~~~~ 357 (686)
... ...+.+.|..|......+ +... ...||.|++.++.+ |++-..|.... |.+.++.+...+
T Consensus 156 ~~~--g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd~~-----------iF~~~ef~~~~~~~l~~rlrelA~ln 222 (400)
T 1zxm_A 156 REY--KKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLS-----------KFKMQSLDKDIVALMVRRAYDIAGST 222 (400)
T ss_dssp TTT--TEEEEEEEETTTTEECCCEEEECCSCCEEEEEEEECGG-----------GGTCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred CCC--CcEEEEEEccCccccCcceeccCCCCCccEEEEEEChH-----------HhCceeecHHHHHHHHHHHHHHHhhC
Confidence 432 123556665552222211 1122 34799999987543 22222344332 455555555567
Q ss_pred CCcEEEEEccc
Q 005635 358 TGTQIYIWNLD 368 (686)
Q Consensus 358 ~GT~IiI~nL~ 368 (686)
.|.+|.+.+.+
T Consensus 223 pgv~i~l~der 233 (400)
T 1zxm_A 223 KDVKVFLNGNK 233 (400)
T ss_dssp SSCEEEETTEE
T ss_pred CCcEEEEecCC
Confidence 89999887653
No 30
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.08 E-value=5.4e-11 Score=130.54 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=123.5
Q ss_pred eccCCCCcceeecCh-HHHHHhhcc--------------------ccCCHHHHHHHHHhcccccC-----CCccEEEEEe
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQA--------------------HSGWIFGAIAELVDNSRDAK-----ATKLEISIES 212 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~--------------------~~~~~~~AIaELIdNS~DA~-----At~I~I~i~~ 212 (686)
.+..+.+++++|.+| +||.+.+.. ....+...+.|+||||+|+. ++.|.|.|+.
T Consensus 16 ~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~ 95 (418)
T 1pvg_A 16 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 95 (418)
T ss_dssp HSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred heeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC
Confidence 456788899999999 899877541 11357789999999999985 7899999872
Q ss_pred ceeccCCCCcCEEEEEeCCCCCCHHHHH--------Hhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEE
Q 005635 213 IYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 281 (686)
Q Consensus 213 ~~~~~~~~~~~~L~I~DNG~GMt~~eL~--------~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk 281 (686)
+...|+|.|||.||+.+... -+|. -|.+.....-..+-|..|+|.+.+ -.|+..+.|.++
T Consensus 96 --------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvV-NALS~~l~V~v~ 166 (418)
T 1pvg_A 96 --------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLC-NIFSTEFILETA 166 (418)
T ss_dssp --------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHH-HHTEEEEEEEEE
T ss_pred --------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeee-eeccceEEEEEE
Confidence 12689999999999976522 1232 233332222345679999999544 459999999998
Q ss_pred e--CCCCceeEEEEEecCCCeeEEEe-ccc--cCCCCcEEEEEecCcchhhhhhhhhhhcccCCCchhh---HHHHhhhc
Q 005635 282 T--ADSRSIAFLSQSLNQGKDNLEIP-IVS--YYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKAGLF 353 (686)
Q Consensus 282 ~--~g~~s~~~ls~sf~~g~~~i~VP-~~~--~~~~Gt~I~l~~~~~se~~~~~~l~~I~kySpF~s~~---I~e~~~~~ 353 (686)
+ +|. .+.+.|..|.....-| +.. ....||.|++.++.+ |+.-..|.... |...++.+
T Consensus 167 r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~~-----------iF~~~~f~~d~l~~l~~Rlrel 231 (418)
T 1pvg_A 167 DLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLT-----------RFGMKELDNDILGVMRRRVYDI 231 (418)
T ss_dssp ETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGG-----------GGTCSSCCHHHHHHHHHHHHHH
T ss_pred ECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEEChH-----------HcCCcccCHHHHHHHHHHHHHH
Confidence 5 443 5667776542111111 111 135799999988654 33333344433 34555555
Q ss_pred ccCCCCcEEEEEccc
Q 005635 354 QDKCTGTQIYIWNLD 368 (686)
Q Consensus 354 ~~~~~GT~IiI~nL~ 368 (686)
...+.|.+|.+.+.+
T Consensus 232 A~Ln~Gl~I~l~der 246 (418)
T 1pvg_A 232 NGSVRDINVYLNGKS 246 (418)
T ss_dssp HHHSTTCEEEETTEE
T ss_pred HhcCCCCEEEEeccc
Confidence 556889999887654
No 31
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.00 E-value=2.6e-10 Score=113.48 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=110.9
Q ss_pred CCCCcceeecCh-HHHHHhhccccCCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 005635 162 GPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 236 (686)
Q Consensus 162 ~~~~~~~v~l~p-~~L~~lgt~~~~~~~~AIaELIdNS~DA---~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ 236 (686)
.+.++++++.+| +||.+.+. ..+...+.|||+||+|+ + ++.|.|.+.. ...|+|.|||.||+.
T Consensus 9 ~l~~le~vr~RPgmYiGs~~~---~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~ 76 (198)
T 3ttz_A 9 VLEGLEAVRKRPGMYIGSTSE---RGLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPV 76 (198)
T ss_dssp HHHHHHHHHHSHHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCC
T ss_pred EecchHHHhcCCCcEECCCCC---cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccc
Confidence 345678999999 89987653 34889999999999995 7 8999999873 248999999999998
Q ss_pred HHHHHhhhcccCCCCCCCCCcccccCceeeeeecccCCeEEEEEEeCCCCceeEEEEEecCCCeeEEEe-ccccCCCCcE
Q 005635 237 QDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQF 315 (686)
Q Consensus 237 ~eL~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~~i~VP-~~~~~~~Gt~ 315 (686)
+.-. ..+. .....+ |+ . ++.-.|+..+.|.++++|. .+.+.|..|...-.++ +......||+
T Consensus 77 ~~h~-------~~~~-~~~e~i--~t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~~~~~~GT~ 139 (198)
T 3ttz_A 77 DIQE-------KMGR-PAVEVI--LT--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVGTTDKTGTV 139 (198)
T ss_dssp SBCT-------TTSS-BHHHHH--HH--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEEECSCCEEE
T ss_pred cccC-------cCCC-cccccc--ce--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceeccCCCCCCcE
Confidence 5210 0000 000111 22 2 2333578999999998874 4667776553211111 1123568999
Q ss_pred EEEEecCcchhhhhhhhhhhc-ccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 005635 316 MELDTVVQSEATAKYNLKSIK-EFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 369 (686)
Q Consensus 316 I~l~~~~~se~~~~~~l~~I~-kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 369 (686)
|++.++.. |+ +-.-|....|.+.++.+...+.|.+|.+.+.+.
T Consensus 140 V~F~Pd~~-----------iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 140 IRFKADGE-----------IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp EEEEECTT-----------TCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred EEEEECHH-----------HhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 99987543 33 334455555666666666678999999998763
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.36 E-value=3.4e-07 Score=105.05 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=92.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 005635 186 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 259 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG 259 (686)
.+..+|.|||+||+||.++ .|.|.+... ..+...|+|.|||.||+.+++..++. |..+.+-.......|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4678999999999999775 677766531 11345799999999999999999874 322222111224558
Q ss_pred ccCceeeeeec---ccCCe-EEEEEEeCCCCceeEEEEEe--cCCCeeE--EEeccccCCCCcEEEEEecCcchhhhhhh
Q 005635 260 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTVVQSEATAKYN 331 (686)
Q Consensus 260 ~fGvGfKsA~~---~lg~~-v~V~Sk~~g~~s~~~ls~sf--~~g~~~i--~VP~~~~~~~Gt~I~l~~~~~se~~~~~~ 331 (686)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..+.... .-+.+.-..+||.|++.++.+
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~~~-------- 183 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAA-------- 183 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECSCC--------
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEecCc--------
Confidence 89999965432 12333 68999877632222222221 2222111 111222234799998874311
Q ss_pred hhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 005635 332 LKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 368 (686)
Q Consensus 332 l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 368 (686)
|..+....|.+.++.+...+.|..|.+.+.+
T Consensus 184 ------~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~ 214 (621)
T 2q2e_B 184 ------YVKGRRQSIYEYLKATAIVNPHARITLIDPD 214 (621)
T ss_dssp ------CCCCSSSSSHHHHHHHHHHCCSCEEEECCTT
T ss_pred ------cchHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 1111001223334444444678888887654
No 33
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.36 E-value=7.3e-07 Score=99.35 Aligned_cols=132 Identities=17% Similarity=0.272 Sum_probs=81.3
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 005635 186 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 259 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG 259 (686)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE---ETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC---CCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4778999999999999876 677777631 0012356799999999999999999875 4333332 1234568
Q ss_pred ccCceeeeeec---ccCCe-EEEEEEeCCCCceeEEEEEec-C-CCeeEE-E-eccc-cCCCCcEEEEEec
Q 005635 260 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-Q-GKDNLE-I-PIVS-YYRKGQFMELDTV 321 (686)
Q Consensus 260 ~fGvGfKsA~~---~lg~~-v~V~Sk~~g~~s~~~ls~sf~-~-g~~~i~-V-P~~~-~~~~Gt~I~l~~~ 321 (686)
..|+|+..+.. ..+.. +.|.|+..+......+...+. . ...... . |... -..+||.|.+.+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~ 178 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIP 178 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEE
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEc
Confidence 89999965432 23444 999998766422222222221 1 111111 1 1111 2347999988764
No 34
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.8e-07 Score=113.85 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=100.5
Q ss_pred eccCCCCcceeecCh-HHHHHhhcc--------------------ccCCHHHHHHHHHhccccc---C--CCccEEEEEe
Q 005635 159 KQAGPLEKNFVRADP-SYLQTLGQA--------------------HSGWIFGAIAELVDNSRDA---K--ATKLEISIES 212 (686)
Q Consensus 159 ~~~~~~~~~~v~l~p-~~L~~lgt~--------------------~~~~~~~AIaELIdNS~DA---~--At~I~I~i~~ 212 (686)
+++.+.+++||+.+| +||.+.++. ....+.-.+.|+||||+|. | .+.|+|.|+.
T Consensus 11 ~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~ 90 (1177)
T 4gfh_A 11 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 90 (1177)
T ss_dssp HSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred cccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC
Confidence 456788899999999 999887432 1125778999999999994 3 2678888862
Q ss_pred ceeccCCCCcCEEEEEeCCCCCCHHH--------HHHhhh---cccCCCCCCCCCcccccCceeeeeecccCCeEEEEEE
Q 005635 213 IYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQ 281 (686)
Q Consensus 213 ~~~~~~~~~~~~L~I~DNG~GMt~~e--------L~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk 281 (686)
....|+|.|||.||+-+. +.-+|+ -|.+........+-|..|+|.+.+. .|+..+.|.+.
T Consensus 91 --------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVN-ALS~~~~vev~ 161 (1177)
T 4gfh_A 91 --------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCN-IFSTEFILETA 161 (1177)
T ss_dssp --------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHH-HTEEEEEEEEE
T ss_pred --------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHh-hcCCceEEEEE
Confidence 257899999999998541 122232 2333332233456799999985444 48888887775
Q ss_pred --eCCCCceeEEEEEecCCCeeEEEecc---ccCCCCcEEEEEecCc
Q 005635 282 --TADSRSIAFLSQSLNQGKDNLEIPIV---SYYRKGQFMELDTVVQ 323 (686)
Q Consensus 282 --~~g~~s~~~ls~sf~~g~~~i~VP~~---~~~~~Gt~I~l~~~~~ 323 (686)
+.| ..+.++|..|......|.. .....||.|++.++.+
T Consensus 162 ~~r~G----k~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~~ 204 (1177)
T 4gfh_A 162 DLNVG----QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLT 204 (1177)
T ss_dssp ETTTT----EEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEECHH
T ss_pred EEcCC----EEEEEEEECCcccCCCCeeecCCCCCCceEEEEEeCHH
Confidence 333 2566777665433322321 2234689999988643
No 35
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.29 E-value=1.3e-06 Score=98.72 Aligned_cols=132 Identities=18% Similarity=0.277 Sum_probs=82.3
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhh-cccCCCCCCCCCccc
Q 005635 186 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 259 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~-fG~s~k~~~~~~~IG 259 (686)
.+..+|.|||+||+||.+. .|.|.+.... ...+...|+|.|||.||+.+++..++. |....+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4778999999999999876 7888876410 012355799999999999999998875 4333332 1235678
Q ss_pred ccCceeeeeec---ccCCe-EEEEEEeCCCCceeEEEEEec-C-CCeeE-EE-ecccc-CCCCcEEEEEec
Q 005635 260 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-Q-GKDNL-EI-PIVSY-YRKGQFMELDTV 321 (686)
Q Consensus 260 ~fGvGfKsA~~---~lg~~-v~V~Sk~~g~~s~~~ls~sf~-~-g~~~i-~V-P~~~~-~~~Gt~I~l~~~ 321 (686)
..|+|+..+.. ..+.. +.|.|+..+......+...+. . ..... .. |...+ ..+||.|.+.+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~ 177 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIP 177 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEE
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEec
Confidence 89999865432 23444 999998765421222222221 1 11111 11 11122 357999988754
No 36
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.58 E-value=8.8e-05 Score=67.63 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 56799999999999987777776653 2345679999999999999988887533332211 145688875
Q ss_pred eee---cccCCeEEEEEEe
Q 005635 267 TGA---MRLGKDALVLTQT 282 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk~ 282 (686)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 1356777776643
No 37
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.44 E-value=0.00011 Score=68.07 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..+|.+||+||+.+.+..|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 55799999999999988888888763 2345679999999999999988877533332211 11245788885
Q ss_pred eee---cccCCeEEEEEEe
Q 005635 267 TGA---MRLGKDALVLTQT 282 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk~ 282 (686)
.+- -.++.++.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 1357777777653
No 38
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.28 E-value=0.00022 Score=71.11 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 005635 187 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 261 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At-----~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~f 261 (686)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 557899999999998532 35555542 2335678999999999999998888533322211 11122346
Q ss_pred Cceeeeee---cccCCeEEEEEEeC
Q 005635 262 GVGFKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 262 GvGfKsA~---~~lg~~v~V~Sk~~ 283 (686)
|+|+..+- -..|.++.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875332 13577788877643
No 39
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.27 E-value=0.0002 Score=77.40 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC----
Q 005635 187 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 253 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A---------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~---- 253 (686)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 55789999999999843 268887763 33456799999999999999999986444333210
Q ss_pred -CCCcccccCceeeeee---cccCCeEEEEEEe
Q 005635 254 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 254 -~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234567899985332 1357777777754
No 40
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.24 E-value=0.00031 Score=64.20 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccccc
Q 005635 187 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 261 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-----t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~f 261 (686)
+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-..+.+. ..+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~~ 106 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCCC
Confidence 67899999999998863 566666653 23456799999999999 66676643222221 12345
Q ss_pred CceeeeeecccCCeEEEEEEe
Q 005635 262 GVGFKTGAMRLGKDALVLTQT 282 (686)
Q Consensus 262 GvGfKsA~~~lg~~v~V~Sk~ 282 (686)
|+|+..+. ++.+.+.+.+..
T Consensus 107 GlGL~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 107 GMGFTIME-NFMDEVIVESEV 126 (145)
T ss_dssp SCHHHHHH-HHSSEEEEEEET
T ss_pred cchHHHHH-HHHheEEEEeCC
Confidence 88885433 345566665543
No 41
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.23 E-value=0.00042 Score=63.18 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A-t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++........ ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 55789999999999864 355555542 234567999999999999999998753222111 1123468887
Q ss_pred eeee---cccCCeEEEEEEe
Q 005635 266 KTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 266 KsA~---~~lg~~v~V~Sk~ 282 (686)
..+- -.+|.++.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5332 2356777776653
No 42
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.17 E-value=0.00028 Score=75.92 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC-----
Q 005635 187 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 252 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A---------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~----- 252 (686)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45789999999999842 258887763 3345679999999999999999998744433221
Q ss_pred CCCCcccccCceeeeee---cccCCeEEEEEEe
Q 005635 253 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 253 ~~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
......+.+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 01223466899985332 2367777777754
No 43
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.17 E-value=0.00026 Score=76.11 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC----
Q 005635 187 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 253 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A---------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~---- 253 (686)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45789999999999832 258887763 33456799999999999999999986444333210
Q ss_pred CCCcccccCceeeeee---cccCCeEEEEEEe
Q 005635 254 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 254 ~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
.....+.+|+|+..+- -.+|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456889985332 2367788887754
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.13 E-value=0.00049 Score=68.51 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+.+.+.+....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 56799999999999865 466666653 334568999999999999998887753332221 346888
Q ss_pred eeeee---cccCCeEEEEEEe
Q 005635 265 FKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~ 282 (686)
++.+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2467777776654
No 45
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.09 E-value=0.00028 Score=76.76 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCC----
Q 005635 187 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 252 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A----------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~---- 252 (686)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 45789999999999843 268887763 2345679999999999999999998644332211
Q ss_pred -CCCCcccccCceeeeee---cccCCeEEEEEEe
Q 005635 253 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 253 -~~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456899985332 1357777777754
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.08 E-value=0.00027 Score=67.96 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCceee
Q 005635 187 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 266 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGfK 266 (686)
+..+|.+||+||+.+......|.+... ...|.|.|||.||+.+++.+.+....+.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 557899999999999755444555431 123999999999999999888753332221 11234688875
Q ss_pred eee---cccCCeEEEEEE
Q 005635 267 TGA---MRLGKDALVLTQ 281 (686)
Q Consensus 267 sA~---~~lg~~v~V~Sk 281 (686)
.+- -.+|.++.|.|.
T Consensus 186 i~~~i~~~~gG~i~i~s~ 203 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNA 203 (222)
T ss_dssp HHHHHHHHTTCEEECCBC
T ss_pred HHHHHHHHcCCEEEEEcC
Confidence 332 124555555443
No 47
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.05 E-value=0.00018 Score=68.55 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHH
Q 005635 187 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 239 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~--------------At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL 239 (686)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4566999999999985 3466666653 234567999999999999987
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.03 E-value=0.00022 Score=76.47 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=61.5
Q ss_pred CHHHHHHHHHhcccccCC----------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCC--
Q 005635 186 WIFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD-- 253 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~A----------t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~-- 253 (686)
.+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~ 311 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQ 311 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccc
Confidence 366899999999999842 168887763 33456799999999999999998886433332210
Q ss_pred -----------------CCCcccccCceeeeee---cccCCeEEEEEEe
Q 005635 254 -----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 254 -----------------~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
.....+.+|+|+..+- -.+|.++.|.|..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 312 DPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp --------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1123456888885332 2467888888764
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.03 E-value=0.00071 Score=65.99 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~--At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 5679999999999985 4566666653 23456799999999999999988875333322 12346888
Q ss_pred eeeee---cccCCeEEEEEEeC
Q 005635 265 FKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~~ 283 (686)
+..+- -.+|..+.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75432 24677888777643
No 50
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.00 E-value=0.00041 Score=62.85 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~--At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..++.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 5678999999999985 4566666653 23456799999999999999888875333222 1346888
Q ss_pred eeeee--c--ccCCeEEEEEE
Q 005635 265 FKTGA--M--RLGKDALVLTQ 281 (686)
Q Consensus 265 fKsA~--~--~lg~~v~V~Sk 281 (686)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86432 2 35777776664
No 51
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.92 E-value=0.00019 Score=65.56 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeceeccC----CCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCccc
Q 005635 187 IFGAIAELVDNSRDAK---ATKLEISIESIYFKKA----GKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 259 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~---At~I~I~i~~~~~~~~----~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG 259 (686)
+..+|.+||+||+.+. +..|.|.+....+... ....-.|.|.|||.||+.+++.+.+....+.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5678999999999974 5567776653110000 000356899999999999999888753332221 3
Q ss_pred ccCceeeeee---cccCCeEEEEEEe
Q 005635 260 RFGVGFKTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 260 ~fGvGfKsA~---~~lg~~v~V~Sk~ 282 (686)
..|+|+..+- -.+|.++.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875332 2467778777754
No 52
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.91 E-value=0.00055 Score=64.39 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|.+||+||+++.. ..|.|.+... ...+.-.|.|.|||.||+.+++..++....+.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 55789999999999853 4566665321 12345678999999999999988877533322211 12223457888
Q ss_pred eeeee---cccCCeEEEEEEeC
Q 005635 265 FKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~~ 283 (686)
++.+- -.++..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 76432 23577777776543
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.78 E-value=0.00074 Score=65.21 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
++.++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 5578999999999874 5677777763 234568999999999998775 1247777
Q ss_pred eeee---cccCCeEEEEEEe
Q 005635 266 KTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 266 KsA~---~~lg~~v~V~Sk~ 282 (686)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 1356677766654
No 54
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.68 E-value=0.0007 Score=60.67 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCcee
Q 005635 187 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 265 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvGf 265 (686)
+..++.|||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 5678999999999874 6778887763 234567999999999987653 2247887
Q ss_pred eeee---cccCCeEEEEEEe
Q 005635 266 KTGA---MRLGKDALVLTQT 282 (686)
Q Consensus 266 KsA~---~~lg~~v~V~Sk~ 282 (686)
..+. -.++..+.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 4322 1356666666544
No 55
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.68 E-value=0.0012 Score=70.95 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccccC------------C--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHH------------
Q 005635 187 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV------------ 240 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~------------A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~------------ 240 (686)
+..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+.
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 4467999999999996 2 355555542 2345679999999999999873
Q ss_pred ------------HhhhcccCCCCCCCCCcccccCceeeee---ecccCCeEEEEEEeC
Q 005635 241 ------------RMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 283 (686)
Q Consensus 241 ------------~~l~fG~s~k~~~~~~~IG~fGvGfKsA---~~~lg~~v~V~Sk~~ 283 (686)
..|..|++.+.. ....+-.|+|+..+ .-.+|..+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~~--~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKEK--VSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCCc--cCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 234333443321 22345578887432 124688888888653
No 56
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.50 E-value=0.0014 Score=67.49 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 187 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~--At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
+..+|.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++.+.+.+....+.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5679999999999986 4677777653 234567999999999999998888753333221 235788
Q ss_pred eeeee--c--ccCCeEEEEEE
Q 005635 265 FKTGA--M--RLGKDALVLTQ 281 (686)
Q Consensus 265 fKsA~--~--~lg~~v~V~Sk 281 (686)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75331 1 35666666664
No 57
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.33 E-value=0.0033 Score=55.62 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHHHHHhhhcccCCCCCCCCCcccccCce
Q 005635 186 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 264 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~eL~~~l~fG~s~k~~~~~~~IG~fGvG 264 (686)
.+..++.|||+||+++. +..|.|.+.. ..+ -.|.|.|||.||+.+. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36789999999999986 6788887764 234 6799999999998654 3788
Q ss_pred eeeee---cccCCeEEEEEEeC
Q 005635 265 FKTGA---MRLGKDALVLTQTA 283 (686)
Q Consensus 265 fKsA~---~~lg~~v~V~Sk~~ 283 (686)
+..+. -.++.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 13566676666544
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.99 E-value=0.0047 Score=54.34 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHH
Q 005635 187 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 238 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~-At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~e 238 (686)
+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 40 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 6689999999999975 4577777763 123 6799999999999866
No 59
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=93.62 E-value=0.0089 Score=70.40 Aligned_cols=46 Identities=41% Similarity=0.859 Sum_probs=37.7
Q ss_pred CceecCc--cchhhccCCCCCC-CCCCCCCceeccCCC-------CCCCCCCcccc
Q 005635 576 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKV 621 (686)
Q Consensus 576 ~~wvQCd--~C~KWR~lp~~~~-~~~lp~~W~C~~n~~-------~~~C~~pEe~~ 621 (686)
+.|+||- .|.|||+||...+ ..+++.+..|.|-++ ...|+.||+.-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 146 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLR 146 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccc
Confidence 4999999 9999999998865 356788999998742 36799999853
No 60
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.00 E-value=0.081 Score=52.89 Aligned_cols=82 Identities=9% Similarity=-0.093 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCC--CCHHHHHHhhhcccCCCCCCCCCcccccC
Q 005635 187 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 262 (686)
Q Consensus 187 ~~~AIaELIdNS~DA~A--t~I~I~i~~~~~~~~~~~~~~L~I~DNG~G--Mt~~eL~~~l~fG~s~k~~~~~~~IG~fG 262 (686)
...++..||+||++|.. ..|.|.+.. ..+.-.|.|.|+|.| |+++.+...+.-..+ ...+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~-------~~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLA-------EGLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCC-------SSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCC-------CCCCCcc
Confidence 45788899999999954 467766653 244667999999987 666555555431111 1122348
Q ss_pred ceeeeee---cccCCeEEEEEE
Q 005635 263 VGFKTGA---MRLGKDALVLTQ 281 (686)
Q Consensus 263 vGfKsA~---~~lg~~v~V~Sk 281 (686)
+|+..+- -..|-.+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 8875321 245777777764
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.41 E-value=0.06 Score=44.39 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.4
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceec
Q 005635 575 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~C~KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
+..+||||.|..|-.+. .++....+|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998876 344445678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=91.49 E-value=0.064 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.5
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceec
Q 005635 575 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~C~KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
+..+||||.|..|-.+. .++....+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 46999999999998887 344445678999995
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.59 E-value=0.12 Score=41.54 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCCCCceecCccchhhccCCC-CCCC--CCCCCCceecc
Q 005635 572 YKPDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 607 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp~-~~~~--~~lp~~W~C~~ 607 (686)
+.++..|||||.|..|-...= ++.. ...++.|+|..
T Consensus 16 ~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 16 YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 334578999999999977652 3322 23468999954
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.76 E-value=0.14 Score=44.93 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=26.0
Q ss_pred CCceecCccchhhccCC-CCCCCCCCCCCceecc
Q 005635 575 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 607 (686)
Q Consensus 575 ~~~wvQCd~C~KWR~lp-~~~~~~~lp~~W~C~~ 607 (686)
+..+||||.|.+|-.+. .++....+|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3344467899999964
No 65
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.73 E-value=0.2 Score=41.45 Aligned_cols=32 Identities=22% Similarity=0.804 Sum_probs=23.8
Q ss_pred CceecCccchhhccCCC-CCC-CCCCCCCceecc
Q 005635 576 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCYM 607 (686)
Q Consensus 576 ~~wvQCd~C~KWR~lp~-~~~-~~~lp~~W~C~~ 607 (686)
..|||||.|..|-.+.= ++. ...+|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 47999999999987762 333 235789999963
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.14 E-value=0.31 Score=52.49 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005635 186 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 237 (686)
Q Consensus 186 ~~~~AIaELIdNS~DA~-----At~I~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~~ 237 (686)
.+..++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 46789999999999986 56788877631 1235689999999999875
No 67
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=79.42 E-value=0.39 Score=39.95 Aligned_cols=36 Identities=17% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCCCceecCccchhhccCC-CCCCCC--CCCCCceecc
Q 005635 572 YKPDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCYM 607 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp-~~~~~~--~lp~~W~C~~ 607 (686)
+-++..|||||.|..|=... .++... ..++.|+|..
T Consensus 19 ~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 19 YDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp CCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 33467999999999996554 122222 2347899964
No 68
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.99 E-value=0.2 Score=42.08 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=22.5
Q ss_pred CCCceecCccchhhccCC-CCCC--CCCCCCCceec
Q 005635 574 PDQEWVQCNKCRKWRMLD-PGFD--TKSLPVEWFCY 606 (686)
Q Consensus 574 ~~~~wvQCd~C~KWR~lp-~~~~--~~~lp~~W~C~ 606 (686)
++..|||||.|..|=... .++. +...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 467999999999996543 1222 12347899996
No 69
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=76.80 E-value=1.2 Score=36.27 Aligned_cols=32 Identities=22% Similarity=0.803 Sum_probs=23.9
Q ss_pred CCceecCc--cchhhccCC-CCC-----CCCCCCCCceec
Q 005635 575 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd--~C~KWR~lp-~~~-----~~~~lp~~W~C~ 606 (686)
+..+|||| .|..|-... .++ ....+|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45899999 599998876 233 224578999996
No 70
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=76.74 E-value=0.93 Score=44.35 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=31.3
Q ss_pred HHHHHhccccc--------CCCccEEEEEeceeccCC--CCcCEEEEEeCCCCCCHHHHHHhhh
Q 005635 191 IAELVDNSRDA--------KATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 244 (686)
Q Consensus 191 IaELIdNS~DA--------~At~I~I~i~~~~~~~~~--~~~~~L~I~DNG~GMt~~eL~~~l~ 244 (686)
+..|++||.+| ....|.|.+.. . ++...|.|.|+|.|++.+.+.+.+.
T Consensus 110 lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSRESENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 34455555555 24678887763 2 3468899999999999988777653
No 71
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.14 E-value=1.1 Score=34.67 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=23.6
Q ss_pred CCCCCceecCc-cchhhccCCC-CCCCC-CCCCCceec
Q 005635 572 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVEWFCY 606 (686)
Q Consensus 572 ~~~~~~wvQCd-~C~KWR~lp~-~~~~~-~lp~~W~C~ 606 (686)
+.++..||||| .|.+|=.+.= ++... ..+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44567899999 8999977652 33211 124789985
No 72
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.57 E-value=0.84 Score=38.26 Aligned_cols=34 Identities=21% Similarity=0.705 Sum_probs=24.2
Q ss_pred CCCceecCc--cchhhccCC-CCCCC------CCCCCCceecc
Q 005635 574 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCYM 607 (686)
Q Consensus 574 ~~~~wvQCd--~C~KWR~lp-~~~~~------~~lp~~W~C~~ 607 (686)
.+..+|||| .|..|-.+. .++.. ..+|++|+|..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 456999999 999997754 12221 15789999963
No 73
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.60 E-value=0.92 Score=37.45 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=20.2
Q ss_pred CCceecCccchhhccCC-CCCCCCC-CCCCceec
Q 005635 575 DQEWVQCNKCRKWRMLD-PGFDTKS-LPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~C~KWR~lp-~~~~~~~-lp~~W~C~ 606 (686)
...|||||.|..|=.+. .++.... ..+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996443 1111111 23799995
No 74
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.59 E-value=1.2 Score=36.19 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=16.0
Q ss_pred CCCCCCceecCc-cchhhccC
Q 005635 571 LYKPDQEWVQCN-KCRKWRML 590 (686)
Q Consensus 571 ~~~~~~~wvQCd-~C~KWR~l 590 (686)
++.++..||||| .|.+|=..
T Consensus 17 p~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 17 EVNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp BCCTTSCEEEBTTTTCCEEEH
T ss_pred ccCCCCCeEecccCccccCch
Confidence 355678999999 99999443
No 75
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.04 E-value=0.64 Score=44.34 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCceecCccchhhccCCC-CCC--CCCCCCCceecc
Q 005635 574 PDQEWVQCNKCRKWRMLDP-GFD--TKSLPVEWFCYM 607 (686)
Q Consensus 574 ~~~~wvQCd~C~KWR~lp~-~~~--~~~lp~~W~C~~ 607 (686)
+...|||||.|..|=...= ++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 4568999999999955431 221 124578999964
No 76
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=59.76 E-value=4.6 Score=39.76 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCeEEEEEec-------eeeEEEcCCC
Q 005635 20 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 48 (686)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 48 (686)
..|.+||+.-+-+||+... .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 4599999999999999998 5999999997
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.50 E-value=4.3 Score=35.25 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.5
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005635 576 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 606 (686)
Q Consensus 576 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 606 (686)
..+||||. |. .|=++.= ++. ..-+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 57999999 77 8966652 222 2235799996
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.63 E-value=6.2 Score=32.49 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=21.0
Q ss_pred CCceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005635 575 DQEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 606 (686)
...+||||. |. .|=.+.= ++. ..-.++|||.
T Consensus 26 ~g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 26 YGEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp CSSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 358999999 87 7977652 222 2224899995
No 79
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.43 E-value=3.6 Score=34.02 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCceecCccchhhccCC-CCCCCCC------CCCCceec
Q 005635 575 DQEWVQCNKCRKWRMLD-PGFDTKS------LPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~C~KWR~lp-~~~~~~~------lp~~W~C~ 606 (686)
+..|||||.|..|-... .++.... .++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999996553 1222111 36899995
No 80
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.02 E-value=6.1 Score=31.70 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=20.1
Q ss_pred CceecCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005635 576 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 606 (686)
Q Consensus 576 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 606 (686)
..+||||. |. .|=.+.= ++. ..-.++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 65 9976652 222 2235799995
No 81
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=46.05 E-value=6.4 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.739 Sum_probs=20.0
Q ss_pred CceecCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 005635 576 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 576 ~~wvQCd~--C~-KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
..+||||. |. .|=.+. .++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 57999999 87 796665 2222 1223799995
No 82
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=45.33 E-value=7 Score=43.92 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.8
Q ss_pred CCCCCceecCccchhhccCC-CCCCC--CCCCCCceecc
Q 005635 572 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 607 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp-~~~~~--~~lp~~W~C~~ 607 (686)
.-++..|||||.|..|=... -++.. ....++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 23332 34568999943
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=44.06 E-value=7.5 Score=37.82 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=21.2
Q ss_pred CceecCccchhhccCCC-CCCC------CCCCC--Cceecc
Q 005635 576 QEWVQCNKCRKWRMLDP-GFDT------KSLPV--EWFCYM 607 (686)
Q Consensus 576 ~~wvQCd~C~KWR~lp~-~~~~------~~lp~--~W~C~~ 607 (686)
..|||||.|..|=...= ++.. ..+|+ .|+|..
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~ 59 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 59 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC
Confidence 35999999999987652 2221 12344 799864
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=40.99 E-value=16 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.611 Sum_probs=19.9
Q ss_pred CceecCccch---hhccCCC-CCCCCCCCCCceec
Q 005635 576 QEWVQCNKCR---KWRMLDP-GFDTKSLPVEWFCY 606 (686)
Q Consensus 576 ~~wvQCd~C~---KWR~lp~-~~~~~~lp~~W~C~ 606 (686)
..+|+||.|. .|=.+.= ++. ....+.|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 4799999966 8976652 232 1223699995
No 85
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=40.19 E-value=3.6 Score=45.88 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCCCceecCccchhhccCC-CCCCC--CCCCCCceecc
Q 005635 572 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 607 (686)
Q Consensus 572 ~~~~~~wvQCd~C~KWR~lp-~~~~~--~~lp~~W~C~~ 607 (686)
+.++..|||||.|..|=... .++.. ...++.|+|..
T Consensus 46 ~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 46 YDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 34467899999999996654 12222 23468999964
No 86
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=38.71 E-value=9.6 Score=33.66 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=22.7
Q ss_pred CCCCCceecCc-cchhhccCC-CCCCCC-------CCCCCceecc
Q 005635 572 YKPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCYM 607 (686)
Q Consensus 572 ~~~~~~wvQCd-~C~KWR~lp-~~~~~~-------~lp~~W~C~~ 607 (686)
|.++..||||| .|..|=... .++... +-.+.|+|..
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~ 57 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDL 57 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHH
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcc
Confidence 44567899998 999996653 122210 1237899953
No 87
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.64 E-value=10 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.759 Sum_probs=20.4
Q ss_pred CCceecCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 005635 575 DQEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~--C~-KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
....|+||. |. .|=.+. .++. ..-.++|||.
T Consensus 20 ~g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 20 YGEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp CSEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 358999999 66 897665 2222 1223899995
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.07 E-value=12 Score=33.03 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.4
Q ss_pred eecCccchhhcc
Q 005635 578 WVQCNKCRKWRM 589 (686)
Q Consensus 578 wvQCd~C~KWR~ 589 (686)
.||||.|..|=+
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 89
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.84 E-value=16 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=19.9
Q ss_pred CCceecCccc---hhhccCC-CCCCCCCCCCCceec
Q 005635 575 DQEWVQCNKC---RKWRMLD-PGFDTKSLPVEWFCY 606 (686)
Q Consensus 575 ~~~wvQCd~C---~KWR~lp-~~~~~~~lp~~W~C~ 606 (686)
+...||||.| ..|=.+. .++.. ...++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~-~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTE-APKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSS-CCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCc-CCCCCEECC
Confidence 4489999997 3785544 12221 236799995
No 90
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=21.97 E-value=31 Score=31.30 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHh
Q 005635 15 DHNEWRRFLIYLQ 27 (686)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (686)
...+|.|||||+.
T Consensus 86 s~~~WdRFMRFMe 98 (120)
T 2kvo_A 86 SQPEWDRFMRFME 98 (120)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3568999999985
Done!