Query 005637
Match_columns 686
No_of_seqs 394 out of 3496
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 3.5E-69 7.6E-74 573.7 35.3 445 207-660 78-558 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 5.4E-66 1.2E-70 533.4 26.9 345 263-634 47-391 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 8.9E-51 1.9E-55 446.4 31.4 343 265-633 59-401 (412)
4 TIGR00382 clpX endopeptidase C 100.0 3.1E-50 6.7E-55 440.7 31.5 344 264-633 64-407 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 1.8E-42 4E-47 376.1 23.9 286 266-633 1-426 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 1.4E-42 3E-47 377.2 22.5 287 265-633 3-428 (443)
7 COG0542 clpA ATP-binding subun 100.0 7.7E-38 1.7E-42 360.0 21.8 280 254-613 464-761 (786)
8 COG1220 HslU ATP-dependent pro 100.0 1.7E-37 3.8E-42 323.7 22.1 287 265-633 3-429 (444)
9 PRK11034 clpA ATP-dependent Cl 100.0 2.9E-32 6.3E-37 318.7 23.2 276 254-612 431-721 (758)
10 CHL00095 clpC Clp protease ATP 100.0 5.2E-31 1.1E-35 313.0 26.0 288 254-612 482-787 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 7E-31 1.5E-35 308.5 23.5 276 254-612 427-717 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 1.6E-29 3.6E-34 300.1 24.6 280 254-612 539-836 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 4.4E-28 9.6E-33 288.9 27.0 276 254-612 538-831 (852)
14 PRK10865 protein disaggregatio 100.0 3.4E-28 7.5E-33 289.4 25.6 276 254-612 541-834 (857)
15 KOG1051 Chaperone HSP104 and r 99.9 3.2E-26 7E-31 267.1 21.5 287 253-612 534-839 (898)
16 COG0466 Lon ATP-dependent Lon 99.9 2.5E-24 5.4E-29 243.1 19.6 247 264-613 310-564 (782)
17 KOG2004 Mitochondrial ATP-depe 99.9 5E-24 1.1E-28 239.3 19.1 246 265-613 399-652 (906)
18 CHL00181 cbbX CbbX; Provisiona 99.9 8.3E-23 1.8E-27 215.9 21.1 239 265-613 11-261 (287)
19 TIGR02880 cbbX_cfxQ probable R 99.9 6E-23 1.3E-27 216.6 19.6 238 265-613 10-260 (284)
20 COG3829 RocR Transcriptional r 99.9 2.7E-23 5.9E-28 229.9 16.9 287 278-681 246-547 (560)
21 PRK10787 DNA-binding ATP-depen 99.9 1.5E-22 3.1E-27 238.8 23.4 257 264-628 309-573 (784)
22 KOG0730 AAA+-type ATPase [Post 99.9 5.7E-23 1.2E-27 230.4 16.9 221 278-612 435-658 (693)
23 TIGR00763 lon ATP-dependent pr 99.9 4E-22 8.6E-27 236.0 22.6 254 256-612 296-560 (775)
24 TIGR02881 spore_V_K stage V sp 99.9 1.4E-21 3E-26 203.3 22.5 230 272-613 2-245 (261)
25 PF07724 AAA_2: AAA domain (Cd 99.9 2.5E-23 5.4E-28 204.2 8.8 166 329-534 2-171 (171)
26 COG3604 FhlA Transcriptional r 99.9 2.4E-22 5.1E-27 220.1 16.9 229 278-612 224-461 (550)
27 COG1222 RPT1 ATP-dependent 26S 99.9 4.2E-22 9.1E-27 210.9 17.9 217 278-608 152-374 (406)
28 COG1223 Predicted ATPase (AAA+ 99.9 3.5E-22 7.6E-27 203.5 14.9 217 277-609 121-338 (368)
29 KOG0736 Peroxisome assembly fa 99.9 6.2E-22 1.4E-26 224.0 15.9 246 278-633 673-928 (953)
30 COG2204 AtoC Response regulato 99.9 3.3E-22 7.2E-27 221.2 13.3 298 276-682 140-445 (464)
31 PF05496 RuvB_N: Holliday junc 99.9 2.3E-21 4.9E-26 196.4 17.3 201 275-601 23-224 (233)
32 KOG0738 AAA+-type ATPase [Post 99.9 1.8E-21 3.9E-26 207.3 16.1 220 278-610 213-436 (491)
33 KOG0734 AAA+-type ATPase conta 99.9 9.3E-21 2E-25 207.5 17.3 233 266-611 293-526 (752)
34 KOG0731 AAA+-type ATPase conta 99.8 2.8E-20 6.1E-25 214.0 20.6 221 278-608 312-535 (774)
35 KOG0733 Nuclear AAA ATPase (VC 99.8 1.7E-20 3.6E-25 208.3 17.8 221 279-609 513-736 (802)
36 KOG0739 AAA+-type ATPase [Post 99.8 1.4E-19 3E-24 187.5 12.2 145 278-469 134-278 (439)
37 COG2255 RuvB Holliday junction 99.8 7.7E-19 1.7E-23 181.5 16.5 190 273-585 23-213 (332)
38 KOG0733 Nuclear AAA ATPase (VC 99.8 9.7E-19 2.1E-23 194.4 16.5 221 279-609 192-414 (802)
39 TIGR02974 phageshock_pspF psp 99.8 1.3E-18 2.9E-23 187.3 16.4 294 279-682 1-320 (329)
40 CHL00195 ycf46 Ycf46; Provisio 99.8 3.7E-18 8.1E-23 192.1 19.3 217 278-609 229-447 (489)
41 COG0464 SpoVK ATPases of the A 99.8 5.7E-18 1.2E-22 191.2 19.5 220 279-610 244-466 (494)
42 COG2256 MGS1 ATPase related to 99.8 2.5E-18 5.4E-23 184.9 14.9 170 331-604 49-218 (436)
43 PRK05022 anaerobic nitric oxid 99.8 4.2E-18 9.2E-23 193.3 17.5 290 278-682 188-496 (509)
44 TIGR01241 FtsH_fam ATP-depende 99.8 1.3E-17 2.9E-22 188.6 21.4 218 279-607 57-276 (495)
45 TIGR01243 CDC48 AAA family ATP 99.8 6.9E-18 1.5E-22 199.2 18.9 221 278-611 454-677 (733)
46 KOG0728 26S proteasome regulat 99.8 2.7E-18 5.9E-23 174.4 12.2 212 277-601 147-363 (404)
47 PTZ00454 26S protease regulato 99.8 1.7E-17 3.6E-22 182.8 19.0 222 278-609 146-369 (398)
48 PRK03992 proteasome-activating 99.8 2.3E-17 5E-22 181.5 19.3 222 278-609 132-355 (389)
49 PLN00020 ribulose bisphosphate 99.8 2.4E-17 5.2E-22 177.3 17.9 176 330-584 148-327 (413)
50 COG0465 HflB ATP-dependent Zn 99.7 1.6E-17 3.5E-22 188.4 16.5 177 278-551 151-331 (596)
51 COG1221 PspF Transcriptional r 99.7 1.6E-17 3.4E-22 181.5 15.7 226 274-610 75-313 (403)
52 PRK10820 DNA-binding transcrip 99.7 4.6E-17 9.9E-22 185.3 19.8 285 278-681 205-500 (520)
53 TIGR01817 nifA Nif-specific re 99.7 4.4E-17 9.5E-22 185.9 19.6 221 278-605 197-427 (534)
54 PRK11608 pspF phage shock prot 99.7 6.7E-17 1.5E-21 173.9 19.4 290 279-681 8-313 (326)
55 CHL00176 ftsH cell division pr 99.7 3.8E-17 8.3E-22 189.1 18.7 219 278-607 184-404 (638)
56 TIGR03689 pup_AAA proteasome A 99.7 5.4E-17 1.2E-21 182.9 19.4 183 279-553 184-378 (512)
57 PRK11388 DNA-binding transcrip 99.7 8.8E-17 1.9E-21 187.0 19.9 213 278-605 326-553 (638)
58 PRK15424 propionate catabolism 99.7 5.3E-17 1.1E-21 184.6 16.5 216 279-604 221-463 (538)
59 TIGR02329 propionate_PrpR prop 99.7 9.4E-17 2E-21 182.5 16.9 282 279-681 214-517 (526)
60 KOG0735 AAA+-type ATPase [Post 99.7 8.2E-17 1.8E-21 181.5 16.1 218 279-611 669-890 (952)
61 PTZ00361 26 proteosome regulat 99.7 1.5E-16 3.3E-21 176.8 17.5 221 278-609 184-407 (438)
62 KOG0727 26S proteasome regulat 99.7 1.2E-16 2.6E-21 162.7 14.1 144 279-469 157-303 (408)
63 TIGR01242 26Sp45 26S proteasom 99.7 6.9E-16 1.5E-20 168.1 18.9 219 278-609 123-346 (364)
64 KOG0737 AAA+-type ATPase [Post 99.7 4.6E-16 1E-20 166.0 14.6 225 279-614 94-319 (386)
65 COG3283 TyrR Transcriptional r 99.7 6.1E-16 1.3E-20 163.9 14.6 257 331-680 228-494 (511)
66 TIGR02915 PEP_resp_reg putativ 99.7 1.7E-15 3.6E-20 168.4 18.9 259 331-681 163-432 (445)
67 TIGR02902 spore_lonB ATP-depen 99.7 9.6E-16 2.1E-20 174.9 17.3 215 279-608 67-314 (531)
68 PRK15429 formate hydrogenlyase 99.7 1E-15 2.3E-20 179.5 18.1 221 278-605 377-608 (686)
69 CHL00206 ycf2 Ycf2; Provisiona 99.7 1E-15 2.2E-20 187.4 17.0 190 328-609 1628-1860(2281)
70 PRK00080 ruvB Holliday junctio 99.7 6.5E-15 1.4E-19 158.3 21.3 204 279-607 27-231 (328)
71 PRK14956 DNA polymerase III su 99.6 2.4E-15 5.1E-20 168.0 17.4 185 279-604 20-228 (484)
72 TIGR00635 ruvB Holliday juncti 99.6 6.2E-15 1.4E-19 155.9 19.6 200 279-603 6-206 (305)
73 KOG0729 26S proteasome regulat 99.6 2.1E-15 4.5E-20 154.6 13.9 215 277-602 177-394 (435)
74 PRK10923 glnG nitrogen regulat 99.6 4.4E-15 9.6E-20 166.2 17.9 262 331-681 162-456 (469)
75 KOG0726 26S proteasome regulat 99.6 6.7E-16 1.5E-20 159.9 9.1 178 278-551 186-367 (440)
76 PRK14962 DNA polymerase III su 99.6 6.3E-15 1.4E-19 165.7 17.6 185 279-604 16-224 (472)
77 PRK13342 recombination factor 99.6 7.2E-15 1.6E-19 162.9 17.8 166 331-604 37-202 (413)
78 PRK15115 response regulator Gl 99.6 6.9E-15 1.5E-19 163.4 17.2 249 331-681 158-425 (444)
79 PRK10733 hflB ATP-dependent me 99.6 1.2E-14 2.6E-19 169.3 19.7 229 268-608 144-374 (644)
80 KOG0652 26S proteasome regulat 99.6 1.7E-15 3.7E-20 154.9 11.0 176 278-551 172-353 (424)
81 KOG2028 ATPase related to the 99.6 2.3E-15 5.1E-20 159.7 12.2 214 331-651 163-380 (554)
82 PRK07003 DNA polymerase III su 99.6 8.8E-15 1.9E-19 169.2 17.4 185 278-603 17-225 (830)
83 PRK11361 acetoacetate metaboli 99.6 1.3E-14 2.7E-19 161.6 17.5 258 331-681 167-444 (457)
84 PLN03025 replication factor C 99.6 8.1E-15 1.8E-19 157.0 15.3 181 279-601 15-203 (319)
85 PF00158 Sigma54_activat: Sigm 99.6 4.5E-15 9.8E-20 145.5 10.5 148 279-490 1-163 (168)
86 PRK14960 DNA polymerase III su 99.6 2E-14 4.3E-19 164.8 17.3 186 278-604 16-225 (702)
87 COG3284 AcoR Transcriptional a 99.6 4.1E-15 8.9E-20 167.8 11.5 199 327-604 333-538 (606)
88 TIGR01818 ntrC nitrogen regula 99.6 9.2E-15 2E-19 163.1 14.2 269 331-681 158-453 (463)
89 KOG0740 AAA+-type ATPase [Post 99.6 1.2E-14 2.7E-19 159.4 14.8 221 278-610 154-375 (428)
90 PRK13341 recombination factor 99.6 2E-14 4.3E-19 168.6 17.5 170 331-604 53-223 (725)
91 PRK12323 DNA polymerase III su 99.6 1.4E-14 3.1E-19 165.6 15.7 185 278-603 17-230 (700)
92 PRK14949 DNA polymerase III su 99.6 2.9E-14 6.2E-19 167.6 18.2 190 278-603 17-225 (944)
93 KOG0651 26S proteasome regulat 99.6 5.5E-15 1.2E-19 154.5 10.4 128 279-434 134-261 (388)
94 PRK14958 DNA polymerase III su 99.6 2.7E-14 5.8E-19 162.1 16.4 185 278-603 17-225 (509)
95 TIGR02639 ClpA ATP-dependent C 99.6 2.1E-14 4.5E-19 169.8 16.0 200 273-594 179-389 (731)
96 PRK14961 DNA polymerase III su 99.6 7.8E-14 1.7E-18 152.2 18.5 185 278-603 17-225 (363)
97 PF00004 AAA: ATPase family as 99.6 1.6E-14 3.5E-19 132.3 10.4 110 333-468 1-110 (132)
98 TIGR01243 CDC48 AAA family ATP 99.6 7.1E-14 1.5E-18 165.3 18.5 218 279-609 180-399 (733)
99 PRK07994 DNA polymerase III su 99.6 7.5E-14 1.6E-18 161.3 17.9 185 278-603 17-225 (647)
100 PRK14952 DNA polymerase III su 99.6 8.9E-14 1.9E-18 159.7 18.1 186 278-604 14-225 (584)
101 KOG0741 AAA+-type ATPase [Post 99.6 1E-14 2.2E-19 160.6 9.8 198 331-612 257-461 (744)
102 KOG0989 Replication factor C, 99.5 6.4E-14 1.4E-18 146.6 15.1 174 279-584 38-219 (346)
103 PF01078 Mg_chelatase: Magnesi 99.5 1.5E-14 3.3E-19 145.6 9.3 182 278-544 4-206 (206)
104 PRK07764 DNA polymerase III su 99.5 8.9E-14 1.9E-18 165.0 17.4 185 278-603 16-226 (824)
105 PRK14964 DNA polymerase III su 99.5 1.9E-13 4.2E-18 153.8 18.8 185 279-604 15-223 (491)
106 PRK06645 DNA polymerase III su 99.5 1.7E-13 3.7E-18 155.2 18.3 185 279-604 23-235 (507)
107 KOG0744 AAA+-type ATPase [Post 99.5 5.8E-14 1.3E-18 147.5 12.4 156 331-558 178-345 (423)
108 PRK14957 DNA polymerase III su 99.5 2E-13 4.4E-18 155.5 17.6 186 278-604 17-226 (546)
109 PRK14959 DNA polymerase III su 99.5 1.9E-13 4.2E-18 156.9 17.3 185 278-603 17-225 (624)
110 PRK10365 transcriptional regul 99.5 4.4E-13 9.5E-18 148.5 18.9 253 330-681 162-432 (441)
111 PRK08691 DNA polymerase III su 99.5 2.3E-13 4.9E-18 157.3 16.8 186 278-604 17-226 (709)
112 TIGR02903 spore_lon_C ATP-depe 99.5 5.5E-13 1.2E-17 154.7 19.3 214 279-606 156-402 (615)
113 PRK14963 DNA polymerase III su 99.5 4.9E-13 1.1E-17 151.6 18.3 185 279-604 16-223 (504)
114 PRK14951 DNA polymerase III su 99.5 3.3E-13 7.2E-18 155.6 16.6 184 279-603 18-230 (618)
115 PRK05563 DNA polymerase III su 99.5 6.2E-13 1.3E-17 152.7 18.0 186 278-604 17-226 (559)
116 TIGR00368 Mg chelatase-related 99.5 4.9E-13 1.1E-17 151.4 16.5 249 278-613 193-484 (499)
117 TIGR02640 gas_vesic_GvpN gas v 99.5 1.3E-12 2.8E-17 136.6 18.3 156 331-551 22-196 (262)
118 smart00350 MCM minichromosome 99.5 5.8E-13 1.3E-17 151.5 17.1 254 271-611 197-487 (509)
119 PRK14969 DNA polymerase III su 99.5 4.9E-13 1.1E-17 152.5 16.1 186 278-604 17-226 (527)
120 TIGR03345 VI_ClpV1 type VI sec 99.5 3.6E-13 7.8E-18 161.2 15.6 191 274-585 185-386 (852)
121 PRK14965 DNA polymerase III su 99.5 1.1E-12 2.4E-17 151.3 18.6 186 278-604 17-226 (576)
122 TIGR02442 Cob-chelat-sub cobal 99.5 1.1E-12 2.3E-17 152.9 18.5 221 278-602 5-280 (633)
123 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.4E-12 3.1E-17 131.6 16.7 164 331-604 39-207 (226)
124 CHL00081 chlI Mg-protoporyphyr 99.5 1.1E-12 2.3E-17 142.4 16.4 228 278-609 18-305 (350)
125 PRK12402 replication factor C 99.5 1.7E-12 3.7E-17 138.5 17.9 191 279-603 17-231 (337)
126 TIGR02030 BchI-ChlI magnesium 99.5 8.8E-13 1.9E-17 142.6 15.2 226 278-609 5-292 (337)
127 PRK13407 bchI magnesium chelat 99.5 1.5E-12 3.3E-17 140.6 16.9 226 279-608 10-288 (334)
128 PRK07133 DNA polymerase III su 99.4 1.9E-12 4E-17 150.9 18.6 190 278-603 19-224 (725)
129 PRK06305 DNA polymerase III su 99.4 1.9E-12 4E-17 145.3 18.0 184 279-603 19-227 (451)
130 PRK08451 DNA polymerase III su 99.4 1.8E-12 3.9E-17 147.2 18.0 185 279-604 16-224 (535)
131 KOG0732 AAA+-type ATPase conta 99.4 8.2E-13 1.8E-17 156.6 15.6 219 279-610 267-493 (1080)
132 PRK14955 DNA polymerase III su 99.4 1.6E-12 3.4E-17 143.7 17.1 186 278-604 17-234 (397)
133 PRK05896 DNA polymerase III su 99.4 1.6E-12 3.4E-17 148.9 17.4 185 278-603 17-225 (605)
134 COG0714 MoxR-like ATPases [Gen 99.4 6.6E-13 1.4E-17 142.9 13.4 145 267-468 14-162 (329)
135 PHA02544 44 clamp loader, smal 99.4 3.5E-12 7.6E-17 135.7 18.8 191 279-602 23-213 (316)
136 TIGR02397 dnaX_nterm DNA polym 99.4 2.3E-12 4.9E-17 138.9 17.6 186 278-604 15-224 (355)
137 PRK06647 DNA polymerase III su 99.4 1.9E-12 4.2E-17 148.5 17.4 185 278-603 17-225 (563)
138 PRK14970 DNA polymerase III su 99.4 3.8E-12 8.2E-17 138.7 18.2 190 279-604 19-215 (367)
139 PRK04195 replication factor C 99.4 5.7E-12 1.2E-16 142.5 19.7 187 279-601 16-205 (482)
140 PRK11034 clpA ATP-dependent Cl 99.4 1.9E-12 4.1E-17 152.8 16.4 190 274-584 184-384 (758)
141 PRK07940 DNA polymerase III su 99.4 1.5E-12 3.3E-17 143.5 14.6 114 278-434 6-142 (394)
142 PRK14948 DNA polymerase III su 99.4 4E-12 8.8E-17 147.4 18.4 184 278-602 17-226 (620)
143 PTZ00111 DNA replication licen 99.4 1.9E-12 4.2E-17 152.8 15.8 160 271-470 444-610 (915)
144 TIGR01650 PD_CobS cobaltochela 99.4 1.4E-12 3E-17 139.8 13.4 160 331-551 65-231 (327)
145 CHL00095 clpC Clp protease ATP 99.4 2.4E-12 5.2E-17 154.1 16.6 190 274-585 177-377 (821)
146 PRK09111 DNA polymerase III su 99.4 4.1E-12 8.8E-17 146.7 17.8 191 278-604 25-239 (598)
147 PRK14953 DNA polymerase III su 99.4 8E-12 1.7E-16 141.3 19.3 185 278-603 17-225 (486)
148 PRK08903 DnaA regulatory inact 99.4 6.1E-12 1.3E-16 127.9 16.4 160 331-606 43-207 (227)
149 KOG0730 AAA+-type ATPase [Post 99.4 3.4E-12 7.3E-17 144.5 15.6 214 278-604 185-399 (693)
150 COG2812 DnaX DNA polymerase II 99.4 1.3E-12 2.7E-17 147.3 12.1 191 278-604 17-226 (515)
151 PRK14954 DNA polymerase III su 99.4 8.5E-12 1.8E-16 144.4 18.9 191 278-604 17-234 (620)
152 PRK14950 DNA polymerase III su 99.4 6.7E-12 1.5E-16 145.1 17.8 186 278-604 17-227 (585)
153 PRK13531 regulatory ATPase Rav 99.4 9E-12 2E-16 139.3 17.6 232 269-609 12-267 (498)
154 KOG0742 AAA+-type ATPase [Post 99.4 2.6E-12 5.7E-17 138.3 12.3 193 329-602 383-588 (630)
155 PRK10865 protein disaggregatio 99.4 5E-12 1.1E-16 151.7 15.7 167 273-551 175-352 (857)
156 PRK14971 DNA polymerase III su 99.4 1.2E-11 2.5E-16 143.5 18.1 185 278-603 18-227 (614)
157 PRK00440 rfc replication facto 99.4 1.4E-11 3.1E-16 130.3 16.6 185 279-604 19-209 (319)
158 PRK08084 DNA replication initi 99.3 3.1E-11 6.6E-16 124.3 17.4 69 523-607 148-218 (235)
159 PRK00411 cdc6 cell division co 99.3 5.5E-11 1.2E-15 130.2 20.3 212 278-608 31-264 (394)
160 COG0606 Predicted ATPase with 99.3 1.1E-11 2.3E-16 136.9 14.3 179 278-545 180-384 (490)
161 TIGR03346 chaperone_ClpB ATP-d 99.3 1.4E-11 3.1E-16 148.0 16.5 190 274-584 171-371 (852)
162 COG1224 TIP49 DNA helicase TIP 99.3 2.3E-11 5.1E-16 129.6 15.7 61 521-600 343-403 (450)
163 TIGR02928 orc1/cdc6 family rep 99.3 3.8E-11 8.3E-16 130.0 17.9 213 278-608 16-256 (365)
164 PRK06893 DNA replication initi 99.3 2.1E-11 4.6E-16 125.0 15.0 165 331-604 40-209 (229)
165 KOG0991 Replication factor C, 99.3 8.4E-12 1.8E-16 126.5 11.5 186 278-602 28-218 (333)
166 TIGR00764 lon_rel lon-related 99.3 1.2E-11 2.5E-16 143.5 14.1 141 391-602 213-367 (608)
167 PRK14086 dnaA chromosomal repl 99.3 4.5E-11 9.8E-16 137.2 17.9 176 331-607 315-497 (617)
168 TIGR00362 DnaA chromosomal rep 99.3 2.4E-11 5.1E-16 134.4 14.9 176 331-607 137-319 (405)
169 PHA02244 ATPase-like protein 99.3 9.3E-11 2E-15 127.4 18.7 182 331-583 120-305 (383)
170 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.7E-17 122.7 3.6 123 332-470 1-124 (139)
171 PRK08727 hypothetical protein; 99.3 7.1E-11 1.5E-15 121.5 16.6 168 331-608 42-214 (233)
172 PF06068 TIP49: TIP49 C-termin 99.3 3.3E-11 7.2E-16 130.0 13.9 62 278-366 25-88 (398)
173 PTZ00112 origin recognition co 99.3 1.2E-10 2.6E-15 136.1 18.9 205 278-604 756-987 (1164)
174 PF00308 Bac_DnaA: Bacterial d 99.3 6.2E-11 1.3E-15 121.0 14.6 171 331-605 35-215 (219)
175 KOG2170 ATPase of the AAA+ sup 99.3 7.4E-11 1.6E-15 123.6 15.2 230 267-583 72-317 (344)
176 PRK00149 dnaA chromosomal repl 99.3 4.2E-11 9E-16 134.4 14.0 176 331-607 149-331 (450)
177 PF07726 AAA_3: ATPase family 99.3 1.2E-12 2.7E-17 122.5 1.5 111 332-470 1-113 (131)
178 TIGR02031 BchD-ChlD magnesium 99.3 8.9E-11 1.9E-15 135.8 16.4 201 331-601 17-233 (589)
179 COG0542 clpA ATP-binding subun 99.2 1.3E-10 2.8E-15 135.9 16.7 198 266-584 160-368 (786)
180 KOG0743 AAA+-type ATPase [Post 99.2 1.9E-10 4.1E-15 126.3 16.4 169 331-584 236-416 (457)
181 PRK05642 DNA replication initi 99.2 1.6E-10 3.4E-15 119.1 14.9 168 331-608 46-218 (234)
182 PRK09862 putative ATP-dependen 99.2 4.1E-10 8.9E-15 127.6 18.0 230 331-613 211-477 (506)
183 PRK14088 dnaA chromosomal repl 99.2 3.9E-10 8.5E-15 126.3 17.3 177 331-607 131-314 (440)
184 PRK09112 DNA polymerase III su 99.2 7.8E-10 1.7E-14 120.6 17.7 185 279-599 25-241 (351)
185 PRK13765 ATP-dependent proteas 99.2 2E-10 4.4E-15 133.3 13.9 51 271-355 25-75 (637)
186 PRK06620 hypothetical protein; 99.2 1.3E-09 2.7E-14 111.1 17.7 63 525-603 130-194 (214)
187 COG1241 MCM2 Predicted ATPase 99.2 1.9E-10 4.2E-15 133.2 12.9 255 271-610 280-574 (682)
188 PRK12422 chromosomal replicati 99.2 5.2E-10 1.1E-14 125.5 15.9 175 331-606 142-321 (445)
189 PRK14087 dnaA chromosomal repl 99.1 7.1E-10 1.5E-14 124.6 16.1 179 331-608 142-329 (450)
190 TIGR00678 holB DNA polymerase 99.1 6E-10 1.3E-14 110.2 12.5 142 331-584 15-180 (188)
191 KOG0480 DNA replication licens 99.1 7.5E-10 1.6E-14 124.9 14.2 255 271-610 339-625 (764)
192 PF05673 DUF815: Protein of un 99.1 1.7E-09 3.8E-14 111.6 15.4 175 279-553 29-207 (249)
193 COG1474 CDC6 Cdc6-related prot 99.1 2.8E-09 6E-14 116.8 17.6 210 279-609 19-248 (366)
194 cd00009 AAA The AAA+ (ATPases 99.1 8E-10 1.7E-14 100.8 10.6 86 331-434 20-109 (151)
195 PRK07471 DNA polymerase III su 99.1 3.5E-09 7.5E-14 116.1 17.1 154 278-551 20-211 (365)
196 smart00763 AAA_PrkA PrkA AAA d 99.0 4.5E-09 9.8E-14 114.2 16.9 60 278-363 52-118 (361)
197 PRK04132 replication factor C 99.0 1.8E-09 4E-14 128.3 14.7 169 326-603 560-736 (846)
198 COG0470 HolB ATPase involved i 99.0 1.7E-09 3.6E-14 114.6 12.6 85 332-434 26-134 (325)
199 PRK05564 DNA polymerase III su 99.0 1.6E-09 3.6E-14 115.8 12.6 151 278-551 5-163 (313)
200 KOG1969 DNA replication checkp 99.0 6.2E-09 1.3E-13 119.3 17.6 230 279-602 273-511 (877)
201 PF14532 Sigma54_activ_2: Sigm 99.0 1.3E-10 2.9E-15 109.6 3.5 70 331-434 22-94 (138)
202 KOG0478 DNA replication licens 99.0 6.3E-10 1.4E-14 126.3 9.2 230 271-584 423-672 (804)
203 KOG1942 DNA helicase, TBP-inte 99.0 6.2E-09 1.4E-13 108.8 15.7 116 394-602 295-411 (456)
204 PRK09087 hypothetical protein; 99.0 3.4E-09 7.4E-14 108.8 13.3 69 524-608 135-205 (226)
205 PF00493 MCM: MCM2/3/5 family 99.0 1.1E-10 2.5E-15 126.1 2.0 258 271-612 18-310 (331)
206 PRK07399 DNA polymerase III su 99.0 3.4E-09 7.4E-14 113.9 13.3 153 278-551 5-193 (314)
207 PRK08058 DNA polymerase III su 99.0 3.3E-09 7.2E-14 114.6 12.8 149 279-551 7-180 (329)
208 COG4650 RtcR Sigma54-dependent 99.0 2.8E-09 6.1E-14 111.3 11.4 202 331-604 209-424 (531)
209 KOG0735 AAA+-type ATPase [Post 99.0 8.8E-09 1.9E-13 117.6 15.0 195 328-609 429-627 (952)
210 PF13177 DNA_pol3_delta2: DNA 98.9 1E-08 2.2E-13 99.9 12.7 104 281-434 1-127 (162)
211 TIGR03015 pepcterm_ATPase puta 98.9 6.7E-08 1.5E-12 100.2 18.8 72 526-609 178-249 (269)
212 PRK13406 bchD magnesium chelat 98.9 1.6E-08 3.5E-13 116.8 15.2 196 331-602 26-226 (584)
213 COG1239 ChlI Mg-chelatase subu 98.9 9.7E-09 2.1E-13 112.4 12.3 210 274-587 14-282 (423)
214 COG2607 Predicted ATPase (AAA+ 98.8 5.5E-08 1.2E-12 99.7 14.5 173 279-552 62-238 (287)
215 PRK05707 DNA polymerase III su 98.8 4.9E-08 1.1E-12 105.6 13.9 130 331-551 23-176 (328)
216 PRK11331 5-methylcytosine-spec 98.7 1.5E-07 3.3E-12 105.0 15.0 123 331-471 195-336 (459)
217 COG0593 DnaA ATPase involved i 98.7 1.5E-07 3.3E-12 103.9 14.0 71 523-609 225-297 (408)
218 TIGR00602 rad24 checkpoint pro 98.7 1.5E-07 3.3E-12 109.5 14.1 71 523-604 256-329 (637)
219 smart00382 AAA ATPases associa 98.7 7.2E-08 1.6E-12 86.7 8.7 76 331-410 3-93 (148)
220 KOG0477 DNA replication licens 98.7 1.5E-08 3.3E-13 114.2 4.9 156 271-470 443-599 (854)
221 KOG0736 Peroxisome assembly fa 98.6 2.2E-07 4.7E-12 107.3 12.5 147 331-555 432-578 (953)
222 PRK08769 DNA polymerase III su 98.6 3.4E-07 7.4E-12 98.7 13.1 131 331-551 27-183 (319)
223 PRK06871 DNA polymerase III su 98.6 4.7E-07 1E-11 97.9 13.7 129 331-551 25-177 (325)
224 PRK07993 DNA polymerase III su 98.5 1.2E-06 2.6E-11 95.2 14.5 130 331-551 25-178 (334)
225 PRK06964 DNA polymerase III su 98.5 6.6E-07 1.4E-11 97.4 11.9 132 331-551 22-202 (342)
226 KOG2035 Replication factor C, 98.5 1.2E-06 2.5E-11 91.7 12.6 165 331-600 35-227 (351)
227 KOG2227 Pre-initiation complex 98.5 1.9E-06 4.1E-11 95.4 14.4 208 277-605 150-378 (529)
228 PRK06090 DNA polymerase III su 98.5 1.9E-06 4.2E-11 93.0 13.9 130 331-551 26-178 (319)
229 KOG0990 Replication factor C, 98.5 3.1E-07 6.7E-12 97.5 7.5 90 331-434 63-156 (360)
230 PF05621 TniB: Bacterial TniB 98.4 1.3E-05 2.7E-10 85.6 18.2 114 271-410 28-160 (302)
231 PRK08116 hypothetical protein; 98.4 9.7E-07 2.1E-11 93.1 9.4 82 331-434 115-205 (268)
232 PF06309 Torsin: Torsin; Inte 98.4 2.5E-06 5.5E-11 80.1 10.8 64 266-354 14-77 (127)
233 PRK08699 DNA polymerase III su 98.4 1.6E-06 3.4E-11 94.0 10.6 87 331-434 22-138 (325)
234 PRK12377 putative replication 98.4 1.1E-06 2.5E-11 91.6 9.0 82 331-434 102-190 (248)
235 KOG2680 DNA helicase TIP49, TB 98.4 7.9E-06 1.7E-10 86.3 15.0 62 278-366 41-104 (454)
236 PF13173 AAA_14: AAA domain 98.4 1.8E-06 4E-11 80.4 9.4 81 331-434 3-85 (128)
237 KOG0741 AAA+-type ATPase [Post 98.4 1.6E-05 3.5E-10 89.2 18.0 92 331-434 539-633 (744)
238 KOG0481 DNA replication licens 98.3 3.7E-07 8.1E-12 101.4 4.0 257 271-611 325-622 (729)
239 KOG0482 DNA replication licens 98.3 5.1E-07 1.1E-11 100.2 4.9 138 271-447 336-477 (721)
240 COG5271 MDN1 AAA ATPase contai 98.3 1.6E-06 3.5E-11 105.4 8.8 146 331-552 889-1046(4600)
241 PF01637 Arch_ATPase: Archaeal 98.3 4.2E-06 9.1E-11 83.5 10.1 47 525-584 177-223 (234)
242 PRK05917 DNA polymerase III su 98.2 1.1E-05 2.4E-10 86.0 13.1 87 331-434 20-120 (290)
243 COG5271 MDN1 AAA ATPase contai 98.2 1.2E-05 2.5E-10 98.4 13.7 154 331-554 1544-1704(4600)
244 PF10431 ClpB_D2-small: C-term 98.2 2.2E-06 4.7E-11 74.0 5.6 69 540-612 1-69 (81)
245 PF12775 AAA_7: P-loop contain 98.2 6.7E-06 1.5E-10 86.9 10.3 200 331-605 34-254 (272)
246 PF13401 AAA_22: AAA domain; P 98.2 1.1E-06 2.4E-11 80.9 3.6 86 331-434 5-113 (131)
247 PF12774 AAA_6: Hydrolytic ATP 98.1 4.3E-05 9.4E-10 79.1 14.0 67 331-410 33-99 (231)
248 PRK07952 DNA replication prote 98.1 9.1E-06 2E-10 84.7 8.9 82 331-434 100-189 (244)
249 PRK06526 transposase; Provisio 98.1 2.1E-06 4.7E-11 89.8 3.9 87 329-434 97-186 (254)
250 COG1484 DnaC DNA replication p 98.1 4.9E-06 1.1E-10 87.1 6.5 71 330-410 105-182 (254)
251 KOG1514 Origin recognition com 98.1 3.7E-05 8.1E-10 88.8 13.3 186 331-609 423-631 (767)
252 PRK08181 transposase; Validate 98.1 6.9E-06 1.5E-10 86.7 7.0 83 330-434 106-194 (269)
253 PF03215 Rad17: Rad17 cell cyc 98.1 0.00014 2.9E-09 83.6 17.8 94 331-434 46-161 (519)
254 PRK06835 DNA replication prote 98.1 8.2E-06 1.8E-10 88.5 7.6 82 331-434 184-273 (329)
255 PRK07132 DNA polymerase III su 98.0 7.2E-05 1.6E-09 80.2 14.4 83 331-434 19-115 (299)
256 KOG0479 DNA replication licens 98.0 2.1E-05 4.6E-10 88.9 10.0 148 271-469 295-450 (818)
257 PRK07276 DNA polymerase III su 98.0 4E-05 8.8E-10 81.8 11.6 85 331-434 25-129 (290)
258 PF01695 IstB_IS21: IstB-like 97.9 1E-05 2.2E-10 80.3 5.3 82 331-434 48-135 (178)
259 PRK06921 hypothetical protein; 97.9 3.9E-05 8.4E-10 80.9 8.1 36 331-366 118-157 (266)
260 PRK15455 PrkA family serine pr 97.8 0.00019 4.1E-09 82.5 14.0 60 278-363 77-137 (644)
261 PF05729 NACHT: NACHT domain 97.8 0.00014 3.1E-09 68.8 11.0 23 332-354 2-24 (166)
262 PF00910 RNA_helicase: RNA hel 97.8 4.5E-05 9.8E-10 69.2 7.2 84 333-440 1-84 (107)
263 PRK05818 DNA polymerase III su 97.8 0.0001 2.2E-09 77.4 10.2 89 330-434 7-113 (261)
264 PRK08939 primosomal protein Dn 97.8 3.8E-05 8.2E-10 82.6 6.6 69 331-409 157-231 (306)
265 PRK09183 transposase/IS protei 97.8 3E-05 6.6E-10 81.4 5.7 87 330-434 102-191 (259)
266 PF07693 KAP_NTPase: KAP famil 97.7 0.00081 1.7E-08 71.7 15.4 138 395-604 172-320 (325)
267 KOG1808 AAA ATPase containing 97.6 8.8E-05 1.9E-09 93.9 6.1 107 331-452 441-551 (1856)
268 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.0014 3.1E-08 71.4 13.3 52 277-354 61-112 (358)
269 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.3E-09 67.0 3.7 31 333-363 2-32 (121)
270 PF13191 AAA_16: AAA ATPase do 97.4 0.0002 4.4E-09 69.3 5.8 36 331-366 25-63 (185)
271 KOG1051 Chaperone HSP104 and r 97.4 0.0013 2.8E-08 79.1 12.6 76 331-410 209-295 (898)
272 COG0464 SpoVK ATPases of the A 97.4 0.00031 6.6E-09 80.1 6.9 97 329-435 17-113 (494)
273 COG3267 ExeA Type II secretory 97.4 0.0024 5.3E-08 66.7 12.7 70 525-611 185-254 (269)
274 PRK00131 aroK shikimate kinase 97.3 0.00021 4.6E-09 68.7 4.3 33 330-362 4-36 (175)
275 cd01120 RecA-like_NTPases RecA 97.3 0.00037 8.1E-09 65.3 5.6 33 332-364 1-36 (165)
276 PHA00729 NTP-binding motif con 97.3 0.00045 9.7E-09 71.3 6.3 25 331-355 18-42 (226)
277 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0078 1.7E-07 68.6 15.9 32 331-362 111-142 (634)
278 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.0018 4E-08 71.3 10.3 28 329-356 61-88 (362)
279 KOG2543 Origin recognition com 97.2 0.0061 1.3E-07 66.9 13.9 64 274-366 3-66 (438)
280 PF03266 NTPase_1: NTPase; In 97.1 0.00066 1.4E-08 66.9 5.6 23 332-354 1-23 (168)
281 PRK13947 shikimate kinase; Pro 97.1 0.00039 8.6E-09 67.3 4.0 32 332-363 3-34 (171)
282 PRK08118 topology modulation p 97.1 0.0004 8.7E-09 68.1 3.9 32 332-363 3-34 (167)
283 PRK07261 topology modulation p 97.1 0.00085 1.8E-08 66.0 5.8 43 332-375 2-44 (171)
284 cd01128 rho_factor Transcripti 97.1 0.0012 2.7E-08 69.1 7.3 80 331-410 17-118 (249)
285 PF13604 AAA_30: AAA domain; P 97.1 0.0018 4E-08 65.1 8.0 86 331-434 19-118 (196)
286 PRK03839 putative kinase; Prov 97.0 0.00051 1.1E-08 67.4 3.9 31 332-362 2-32 (180)
287 cd00464 SK Shikimate kinase (S 97.0 0.00055 1.2E-08 64.8 3.9 31 332-362 1-31 (154)
288 PRK00625 shikimate kinase; Pro 97.0 0.0006 1.3E-08 67.6 4.0 31 332-362 2-32 (173)
289 TIGR02688 conserved hypothetic 97.0 0.0016 3.4E-08 72.8 7.3 100 331-470 210-313 (449)
290 PRK10536 hypothetical protein; 97.0 0.0049 1.1E-07 64.9 10.5 23 331-353 75-97 (262)
291 PRK09376 rho transcription ter 97.0 0.0012 2.6E-08 73.2 6.2 78 331-410 170-271 (416)
292 PF13671 AAA_33: AAA domain; P 96.9 0.00049 1.1E-08 64.3 2.5 30 333-364 2-31 (143)
293 PRK14532 adenylate kinase; Pro 96.9 0.00076 1.7E-08 66.6 3.9 29 332-360 2-30 (188)
294 PRK04296 thymidine kinase; Pro 96.9 0.0033 7.1E-08 62.9 8.1 31 331-361 3-36 (190)
295 PRK00771 signal recognition pa 96.9 0.0089 1.9E-07 67.5 12.3 38 329-366 94-134 (437)
296 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.3E-08 67.3 4.3 31 331-361 4-34 (215)
297 PRK06217 hypothetical protein; 96.8 0.0011 2.4E-08 65.6 4.2 32 332-363 3-34 (183)
298 PRK13949 shikimate kinase; Pro 96.8 0.001 2.2E-08 65.4 3.9 32 331-362 2-33 (169)
299 PRK13948 shikimate kinase; Pro 96.8 0.0013 2.7E-08 65.8 4.5 34 329-362 9-42 (182)
300 PHA02624 large T antigen; Prov 96.8 0.0087 1.9E-07 69.5 11.8 87 331-440 432-521 (647)
301 PF00931 NB-ARC: NB-ARC domain 96.8 0.0092 2E-07 62.3 11.1 23 331-353 20-42 (287)
302 TIGR01618 phage_P_loop phage n 96.8 0.0016 3.5E-08 67.0 5.1 22 330-351 12-33 (220)
303 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0012 2.6E-08 64.7 3.8 32 333-366 2-33 (183)
304 PRK14974 cell division protein 96.8 0.0066 1.4E-07 66.3 9.8 35 330-364 140-177 (336)
305 COG1125 OpuBA ABC-type proline 96.7 0.012 2.5E-07 61.9 11.0 34 321-354 17-51 (309)
306 cd02020 CMPK Cytidine monophos 96.7 0.0013 2.8E-08 61.5 3.7 30 333-362 2-31 (147)
307 PRK14531 adenylate kinase; Pro 96.7 0.0014 3.1E-08 64.9 4.1 30 331-360 3-32 (183)
308 cd02021 GntK Gluconate kinase 96.7 0.0014 3.1E-08 62.1 3.7 27 333-359 2-28 (150)
309 TIGR00767 rho transcription te 96.7 0.0034 7.4E-08 69.8 7.1 80 331-410 169-270 (415)
310 COG0703 AroK Shikimate kinase 96.7 0.0013 2.8E-08 65.1 3.4 32 331-362 3-34 (172)
311 cd01428 ADK Adenylate kinase ( 96.7 0.0014 3.1E-08 64.5 3.7 28 333-360 2-29 (194)
312 COG3854 SpoIIIAA ncharacterize 96.7 0.0037 8.1E-08 64.6 6.7 76 331-407 138-230 (308)
313 PRK05057 aroK shikimate kinase 96.7 0.0018 3.9E-08 63.8 4.3 33 331-363 5-37 (172)
314 PF00448 SRP54: SRP54-type pro 96.7 0.0077 1.7E-07 60.9 8.9 24 331-354 2-25 (196)
315 COG1373 Predicted ATPase (AAA+ 96.6 0.015 3.2E-07 65.0 11.9 69 332-408 39-107 (398)
316 cd00227 CPT Chloramphenicol (C 96.6 0.0015 3.2E-08 64.2 3.5 34 331-364 3-36 (175)
317 KOG3347 Predicted nucleotide k 96.6 0.0015 3.3E-08 63.2 3.4 35 331-367 8-42 (176)
318 TIGR01313 therm_gnt_kin carboh 96.6 0.0014 3.1E-08 63.1 3.3 27 333-359 1-27 (163)
319 cd01124 KaiC KaiC is a circadi 96.6 0.0042 9E-08 60.7 6.4 31 333-363 2-35 (187)
320 PRK13946 shikimate kinase; Pro 96.6 0.0018 4E-08 64.2 3.9 34 330-363 10-43 (184)
321 PRK03731 aroL shikimate kinase 96.6 0.0021 4.5E-08 62.4 4.2 33 331-363 3-35 (171)
322 TIGR03574 selen_PSTK L-seryl-t 96.6 0.082 1.8E-06 54.9 16.2 34 333-366 2-38 (249)
323 PHA02774 E1; Provisional 96.6 0.0056 1.2E-07 70.8 7.9 76 331-440 435-511 (613)
324 PRK12723 flagellar biosynthesi 96.6 0.011 2.4E-07 65.8 10.0 25 330-354 174-198 (388)
325 PF01583 APS_kinase: Adenylyls 96.6 0.0047 1E-07 60.4 6.3 37 331-367 3-42 (156)
326 PTZ00088 adenylate kinase 1; P 96.5 0.0023 5.1E-08 66.2 4.0 31 331-361 7-37 (229)
327 cd03284 ABC_MutS1 MutS1 homolo 96.5 0.011 2.3E-07 60.6 8.8 23 330-352 30-52 (216)
328 TIGR01425 SRP54_euk signal rec 96.5 0.029 6.4E-07 63.2 12.9 37 330-366 100-139 (429)
329 cd02027 APSK Adenosine 5'-phos 96.5 0.0075 1.6E-07 58.0 7.0 34 333-366 2-38 (149)
330 PRK06762 hypothetical protein; 96.4 0.0028 6.1E-08 61.2 4.0 36 331-366 3-38 (166)
331 COG1618 Predicted nucleotide k 96.4 0.01 2.2E-07 58.4 7.5 24 331-354 6-29 (179)
332 COG1116 TauB ABC-type nitrate/ 96.4 0.027 5.9E-07 58.8 11.1 31 324-354 22-53 (248)
333 PRK14528 adenylate kinase; Pro 96.4 0.003 6.6E-08 62.9 4.0 30 331-360 2-31 (186)
334 cd01131 PilT Pilus retraction 96.4 0.0085 1.8E-07 60.3 7.1 25 331-355 2-26 (198)
335 PRK05480 uridine/cytidine kina 96.4 0.028 6E-07 56.6 10.9 36 330-365 6-42 (209)
336 PRK06547 hypothetical protein; 96.4 0.0033 7.2E-08 62.2 4.0 32 331-362 16-47 (172)
337 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0034 7.4E-08 61.3 4.0 33 331-365 4-36 (188)
338 PRK02496 adk adenylate kinase; 96.3 0.0031 6.8E-08 62.1 3.6 29 332-360 3-31 (184)
339 PRK08154 anaerobic benzoate ca 96.3 0.0067 1.5E-07 65.3 6.2 33 330-362 133-165 (309)
340 TIGR01351 adk adenylate kinase 96.3 0.0037 8E-08 63.2 3.8 28 333-360 2-29 (210)
341 COG0563 Adk Adenylate kinase a 96.2 0.0041 8.9E-08 62.0 3.9 33 332-366 2-34 (178)
342 COG1102 Cmk Cytidylate kinase 96.2 0.0037 8.1E-08 61.3 3.4 27 333-359 3-29 (179)
343 PF13521 AAA_28: AAA domain; P 96.2 0.0065 1.4E-07 58.7 5.1 33 333-366 2-34 (163)
344 PRK11889 flhF flagellar biosyn 96.2 0.043 9.4E-07 61.3 12.0 36 330-365 241-279 (436)
345 PLN02200 adenylate kinase fami 96.2 0.0045 9.7E-08 64.2 4.2 36 330-367 43-78 (234)
346 PF13238 AAA_18: AAA domain; P 96.2 0.0035 7.6E-08 56.9 3.0 22 333-354 1-22 (129)
347 PF14516 AAA_35: AAA-like doma 96.2 0.049 1.1E-06 59.3 12.3 37 330-366 31-70 (331)
348 COG4608 AppF ABC-type oligopep 96.2 0.017 3.6E-07 61.1 8.3 100 320-434 28-153 (268)
349 COG0529 CysC Adenylylsulfate k 96.2 0.014 3E-07 58.3 7.0 72 331-402 24-100 (197)
350 PRK00279 adk adenylate kinase; 96.1 0.0045 9.8E-08 62.8 3.8 29 332-360 2-30 (215)
351 PRK14722 flhF flagellar biosyn 96.1 0.022 4.7E-07 63.2 9.2 25 330-354 137-161 (374)
352 PLN03210 Resistant to P. syrin 96.1 0.029 6.4E-07 70.6 11.5 27 331-357 208-234 (1153)
353 TIGR03499 FlhF flagellar biosy 96.1 0.055 1.2E-06 57.6 11.9 36 330-365 194-234 (282)
354 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.026 5.6E-07 57.4 8.9 22 331-352 30-51 (204)
355 PF12780 AAA_8: P-loop contain 96.1 0.02 4.3E-07 60.7 8.4 84 330-434 31-114 (268)
356 PRK14527 adenylate kinase; Pro 96.0 0.0049 1.1E-07 61.3 3.3 29 331-359 7-35 (191)
357 KOG1968 Replication factor C, 96.0 0.013 2.8E-07 71.1 7.3 36 332-367 359-394 (871)
358 cd03280 ABC_MutS2 MutS2 homolo 96.0 0.021 4.5E-07 57.4 7.7 27 325-351 21-49 (200)
359 KOG0058 Peptide exporter, ABC 96.0 0.045 9.7E-07 64.5 11.3 46 321-366 484-532 (716)
360 PHA01747 putative ATP-dependen 96.0 0.025 5.5E-07 62.1 8.7 85 330-437 190-274 (425)
361 TIGR01448 recD_rel helicase, p 96.0 0.025 5.4E-07 67.8 9.5 89 331-434 339-441 (720)
362 PRK08233 hypothetical protein; 96.0 0.0089 1.9E-07 58.1 4.8 34 331-364 4-38 (182)
363 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.028 6E-07 57.4 8.5 22 331-352 30-51 (213)
364 PRK04040 adenylate kinase; Pro 95.9 0.0071 1.5E-07 60.6 4.1 25 331-355 3-27 (188)
365 PLN02674 adenylate kinase 95.9 0.0071 1.5E-07 63.3 4.2 34 331-366 32-65 (244)
366 smart00534 MUTSac ATPase domai 95.9 0.027 5.9E-07 55.9 8.2 19 333-351 2-20 (185)
367 PHA02530 pseT polynucleotide k 95.9 0.007 1.5E-07 64.1 4.2 30 331-360 3-33 (300)
368 PRK04182 cytidylate kinase; Pr 95.9 0.0075 1.6E-07 58.4 4.0 29 332-360 2-30 (180)
369 cd02019 NK Nucleoside/nucleoti 95.9 0.011 2.4E-07 49.4 4.5 22 333-354 2-23 (69)
370 TIGR02237 recomb_radB DNA repa 95.9 0.012 2.7E-07 58.9 5.6 35 331-365 13-50 (209)
371 PRK10078 ribose 1,5-bisphospho 95.9 0.0074 1.6E-07 59.8 3.9 29 331-359 3-31 (186)
372 PF13245 AAA_19: Part of AAA d 95.9 0.011 2.5E-07 50.7 4.5 24 331-354 11-35 (76)
373 PTZ00301 uridine kinase; Provi 95.9 0.036 7.9E-07 56.7 8.8 24 331-354 4-27 (210)
374 PRK06067 flagellar accessory p 95.9 0.019 4E-07 58.9 6.8 34 330-363 25-61 (234)
375 cd01130 VirB11-like_ATPase Typ 95.8 0.029 6.2E-07 55.8 7.9 25 331-355 26-50 (186)
376 PRK03846 adenylylsulfate kinas 95.8 0.03 6.6E-07 56.1 8.1 36 331-366 25-63 (198)
377 PRK09361 radB DNA repair and r 95.8 0.019 4.2E-07 58.3 6.8 34 331-364 24-60 (225)
378 PRK14526 adenylate kinase; Pro 95.8 0.0082 1.8E-07 61.4 4.0 33 332-366 2-34 (211)
379 PF05272 VirE: Virulence-assoc 95.8 0.019 4.1E-07 58.2 6.5 97 331-469 53-149 (198)
380 TIGR02858 spore_III_AA stage I 95.8 0.029 6.3E-07 59.5 8.2 25 331-355 112-136 (270)
381 TIGR01526 nadR_NMN_Atrans nico 95.8 0.017 3.6E-07 62.9 6.5 37 331-367 163-199 (325)
382 TIGR01420 pilT_fam pilus retra 95.8 0.022 4.8E-07 62.3 7.4 25 331-355 123-147 (343)
383 PF00406 ADK: Adenylate kinase 95.8 0.0073 1.6E-07 57.7 3.2 30 335-366 1-30 (151)
384 PRK11823 DNA repair protein Ra 95.8 0.034 7.4E-07 63.0 9.1 35 331-365 81-118 (446)
385 PF05970 PIF1: PIF1-like helic 95.8 0.017 3.6E-07 63.7 6.4 26 330-355 22-47 (364)
386 cd03287 ABC_MSH3_euk MutS3 hom 95.7 0.068 1.5E-06 55.1 10.2 22 331-352 32-53 (222)
387 PRK01184 hypothetical protein; 95.7 0.0095 2.1E-07 58.6 3.7 29 332-361 3-31 (184)
388 TIGR02173 cyt_kin_arch cytidyl 95.7 0.01 2.3E-07 57.0 3.9 29 332-360 2-30 (171)
389 PLN02199 shikimate kinase 95.6 0.011 2.4E-07 63.4 4.2 32 331-362 103-134 (303)
390 PF01745 IPT: Isopentenyl tran 95.6 0.01 2.2E-07 60.9 3.7 35 332-366 3-37 (233)
391 PF00488 MutS_V: MutS domain V 95.6 0.047 1E-06 56.7 8.8 109 331-477 44-173 (235)
392 COG0572 Udk Uridine kinase [Nu 95.6 0.089 1.9E-06 54.2 10.5 104 331-465 9-114 (218)
393 cd01129 PulE-GspE PulE/GspE Th 95.6 0.03 6.6E-07 59.1 7.4 68 331-406 81-160 (264)
394 PRK04220 2-phosphoglycerate ki 95.6 0.037 8E-07 59.6 8.0 28 331-358 93-120 (301)
395 PLN02165 adenylate isopentenyl 95.6 0.01 2.3E-07 64.6 3.9 33 331-363 44-76 (334)
396 PRK06696 uridine kinase; Valid 95.6 0.014 3E-07 59.7 4.5 37 331-367 23-62 (223)
397 COG1936 Predicted nucleotide k 95.6 0.0089 1.9E-07 59.3 2.9 30 332-362 2-31 (180)
398 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.03 6.6E-07 53.4 6.5 30 325-354 20-50 (144)
399 PF00437 T2SE: Type II/IV secr 95.5 0.022 4.7E-07 59.6 6.0 68 331-406 128-208 (270)
400 smart00487 DEXDc DEAD-like hel 95.5 0.039 8.5E-07 52.6 7.3 24 331-354 25-49 (201)
401 cd01121 Sms Sms (bacterial rad 95.5 0.017 3.7E-07 64.0 5.1 34 331-364 83-119 (372)
402 PF09848 DUF2075: Uncharacteri 95.4 0.06 1.3E-06 59.0 9.2 24 331-354 2-25 (352)
403 PRK12608 transcription termina 95.4 0.017 3.6E-07 63.9 4.8 80 331-410 134-235 (380)
404 PRK14529 adenylate kinase; Pro 95.4 0.011 2.4E-07 61.0 3.3 28 332-359 2-29 (223)
405 cd03243 ABC_MutS_homologs The 95.4 0.057 1.2E-06 54.2 8.4 22 331-352 30-51 (202)
406 PF10923 DUF2791: P-loop Domai 95.4 0.17 3.6E-06 57.0 12.7 171 378-613 227-403 (416)
407 PRK00091 miaA tRNA delta(2)-is 95.4 0.015 3.2E-07 62.9 4.2 35 331-365 5-39 (307)
408 TIGR02788 VirB11 P-type DNA tr 95.4 0.033 7.2E-07 60.0 7.0 25 331-355 145-169 (308)
409 PF08433 KTI12: Chromatin asso 95.4 0.034 7.4E-07 59.0 6.8 77 332-409 3-84 (270)
410 TIGR00455 apsK adenylylsulfate 95.4 0.042 9.1E-07 54.2 7.0 37 330-366 18-57 (184)
411 PLN02459 probable adenylate ki 95.4 0.015 3.3E-07 61.3 4.1 34 331-366 30-63 (261)
412 PRK13764 ATPase; Provisional 95.4 0.026 5.7E-07 66.0 6.3 25 331-355 258-282 (602)
413 PRK13900 type IV secretion sys 95.3 0.071 1.5E-06 58.3 9.3 25 331-355 161-185 (332)
414 TIGR02012 tigrfam_recA protein 95.3 0.053 1.2E-06 59.0 8.2 76 331-410 56-148 (321)
415 PRK05541 adenylylsulfate kinas 95.3 0.014 2.9E-07 57.2 3.4 26 330-355 7-32 (176)
416 PF01443 Viral_helicase1: Vira 95.3 0.02 4.4E-07 57.9 4.7 22 333-354 1-22 (234)
417 KOG3354 Gluconate kinase [Carb 95.3 0.016 3.5E-07 56.7 3.7 36 330-367 12-47 (191)
418 PRK00889 adenylylsulfate kinas 95.3 0.02 4.4E-07 55.9 4.5 35 331-365 5-42 (175)
419 PRK12339 2-phosphoglycerate ki 95.3 0.02 4.3E-07 58.0 4.5 28 331-358 4-31 (197)
420 PF02562 PhoH: PhoH-like prote 95.3 0.054 1.2E-06 55.4 7.6 24 331-354 20-43 (205)
421 PF13086 AAA_11: AAA domain; P 95.3 0.012 2.7E-07 58.5 3.0 22 333-354 20-41 (236)
422 PRK09825 idnK D-gluconate kina 95.3 0.019 4.2E-07 56.8 4.2 27 331-357 4-30 (176)
423 TIGR00150 HI0065_YjeE ATPase, 95.2 0.019 4.2E-07 54.7 4.0 27 331-357 23-49 (133)
424 cd03283 ABC_MutS-like MutS-lik 95.2 0.085 1.8E-06 53.3 8.8 23 331-353 26-48 (199)
425 COG1485 Predicted ATPase [Gene 95.2 0.23 5.1E-06 54.4 12.5 27 329-355 64-90 (367)
426 TIGR02782 TrbB_P P-type conjug 95.2 0.096 2.1E-06 56.4 9.6 24 331-354 133-156 (299)
427 TIGR02322 phosphon_PhnN phosph 95.2 0.017 3.6E-07 56.5 3.5 25 332-356 3-27 (179)
428 PF04548 AIG1: AIG1 family; I 95.2 0.46 1E-05 48.3 14.1 20 332-351 2-21 (212)
429 PRK06581 DNA polymerase III su 95.2 0.15 3.2E-06 53.5 10.5 87 331-434 16-114 (263)
430 PRK04841 transcriptional regul 95.2 0.22 4.7E-06 60.6 13.7 28 331-359 33-60 (903)
431 PRK12727 flagellar biosynthesi 95.2 0.24 5.2E-06 57.3 13.1 25 330-354 350-374 (559)
432 PLN02796 D-glycerate 3-kinase 95.1 0.75 1.6E-05 50.6 16.2 25 331-355 101-125 (347)
433 TIGR01613 primase_Cterm phage/ 95.1 0.44 9.5E-06 51.1 14.4 29 331-359 77-105 (304)
434 COG1067 LonB Predicted ATP-dep 95.1 0.14 3E-06 60.5 11.3 145 387-600 217-373 (647)
435 PRK10867 signal recognition pa 95.1 0.12 2.7E-06 58.4 10.5 38 330-367 100-141 (433)
436 COG3842 PotA ABC-type spermidi 95.1 0.014 2.9E-07 64.2 2.8 34 321-354 21-55 (352)
437 TIGR02768 TraA_Ti Ti-type conj 95.0 0.057 1.2E-06 65.0 8.1 87 331-434 369-464 (744)
438 cd03222 ABC_RNaseL_inhibitor T 95.0 0.047 1E-06 54.4 6.1 24 331-354 26-49 (177)
439 PRK05703 flhF flagellar biosyn 95.0 0.2 4.3E-06 56.6 11.8 36 330-365 221-261 (424)
440 TIGR03263 guanyl_kin guanylate 95.0 0.019 4.2E-07 55.9 3.4 26 331-356 2-27 (180)
441 cd00544 CobU Adenosylcobinamid 95.0 0.099 2.1E-06 51.7 8.3 31 333-363 2-32 (169)
442 PRK00300 gmk guanylate kinase; 95.0 0.024 5.2E-07 56.6 4.0 26 330-355 5-30 (205)
443 cd00071 GMPK Guanosine monopho 95.0 0.023 5E-07 53.9 3.6 26 333-358 2-27 (137)
444 PRK14721 flhF flagellar biosyn 95.0 0.43 9.3E-06 53.9 14.2 24 330-353 191-214 (420)
445 PRK14737 gmk guanylate kinase; 94.9 0.023 4.9E-07 56.9 3.7 35 330-364 4-38 (186)
446 PRK13851 type IV secretion sys 94.9 0.05 1.1E-06 59.7 6.6 25 331-355 163-187 (344)
447 COG2274 SunT ABC-type bacterio 94.9 0.18 3.9E-06 60.5 11.6 47 320-366 488-537 (709)
448 PF13479 AAA_24: AAA domain 94.9 0.035 7.7E-07 56.5 5.1 20 331-350 4-23 (213)
449 cd03286 ABC_MSH6_euk MutS6 hom 94.9 0.096 2.1E-06 53.9 8.2 24 330-353 30-53 (218)
450 COG1419 FlhF Flagellar GTP-bin 94.9 0.14 3E-06 57.1 9.9 38 329-366 202-246 (407)
451 TIGR00064 ftsY signal recognit 94.9 0.069 1.5E-06 56.7 7.4 37 330-366 72-111 (272)
452 PRK05537 bifunctional sulfate 94.8 0.069 1.5E-06 62.4 7.8 36 331-366 393-432 (568)
453 cd00983 recA RecA is a bacter 94.8 0.11 2.3E-06 56.8 8.7 80 331-410 56-148 (325)
454 PRK13808 adenylate kinase; Pro 94.8 0.025 5.3E-07 61.8 3.8 29 332-360 2-30 (333)
455 PRK10875 recD exonuclease V su 94.8 0.13 2.7E-06 60.8 9.9 24 331-354 168-191 (615)
456 PRK12338 hypothetical protein; 94.8 0.029 6.4E-07 60.8 4.2 29 330-358 4-32 (319)
457 PRK14723 flhF flagellar biosyn 94.7 0.41 8.8E-06 57.7 14.0 25 330-354 185-209 (767)
458 PF06414 Zeta_toxin: Zeta toxi 94.7 0.031 6.7E-07 56.1 4.1 38 330-367 15-53 (199)
459 cd03285 ABC_MSH2_euk MutS2 hom 94.7 0.18 3.9E-06 51.9 9.7 24 330-353 30-53 (222)
460 COG2804 PulE Type II secretory 94.7 0.11 2.4E-06 59.2 8.7 69 331-407 259-339 (500)
461 PF10443 RNA12: RNA12 protein; 94.7 1.4 3E-05 49.7 17.1 35 331-367 18-54 (431)
462 TIGR00174 miaA tRNA isopenteny 94.7 0.032 7E-07 59.7 4.3 34 333-366 2-35 (287)
463 cd02023 UMPK Uridine monophosp 94.7 0.039 8.6E-07 54.9 4.6 33 333-365 2-35 (198)
464 PF06048 DUF927: Domain of unk 94.7 0.2 4.4E-06 53.4 10.3 104 266-410 154-257 (286)
465 PRK11545 gntK gluconate kinase 94.6 0.021 4.6E-07 55.7 2.6 26 336-361 1-26 (163)
466 PRK12337 2-phosphoglycerate ki 94.6 0.092 2E-06 59.7 7.8 34 330-363 255-289 (475)
467 COG0324 MiaA tRNA delta(2)-iso 94.6 0.036 7.9E-07 59.8 4.4 36 331-366 4-39 (308)
468 TIGR02525 plasmid_TraJ plasmid 94.6 0.087 1.9E-06 58.5 7.5 24 331-354 150-173 (372)
469 PRK08356 hypothetical protein; 94.6 0.038 8.3E-07 55.2 4.3 32 331-365 6-37 (195)
470 cd02022 DPCK Dephospho-coenzym 94.6 0.035 7.7E-07 54.8 4.0 31 333-366 2-32 (179)
471 cd02024 NRK1 Nicotinamide ribo 94.6 0.031 6.7E-07 56.2 3.6 28 333-360 2-30 (187)
472 PRK13975 thymidylate kinase; P 94.6 0.053 1.1E-06 53.6 5.2 27 331-357 3-29 (196)
473 PLN02840 tRNA dimethylallyltra 94.5 0.039 8.4E-07 62.0 4.6 36 331-366 22-57 (421)
474 PRK14021 bifunctional shikimat 94.5 0.034 7.3E-07 64.6 4.3 33 331-363 7-39 (542)
475 cd02028 UMPK_like Uridine mono 94.5 0.04 8.8E-07 54.6 4.2 34 333-366 2-38 (179)
476 cd01852 AIG1 AIG1 (avrRpt2-ind 94.4 0.15 3.2E-06 50.8 8.1 21 332-352 2-22 (196)
477 PF00485 PRK: Phosphoribulokin 94.4 0.03 6.4E-07 55.9 3.1 23 333-355 2-24 (194)
478 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.1 2.2E-06 54.8 7.2 33 330-362 36-71 (259)
479 KOG0055 Multidrug/pheromone ex 94.4 0.19 4.1E-06 62.6 10.4 38 330-367 1016-1055(1228)
480 PRK13951 bifunctional shikimat 94.4 0.036 7.8E-07 63.6 4.0 32 332-363 2-33 (488)
481 PF04851 ResIII: Type III rest 94.4 0.07 1.5E-06 51.1 5.4 32 331-362 26-57 (184)
482 PRK09270 nucleoside triphospha 94.3 0.079 1.7E-06 54.4 6.0 25 331-355 34-58 (229)
483 PF08303 tRNA_lig_kinase: tRNA 94.3 0.4 8.8E-06 47.4 10.5 65 336-410 5-69 (168)
484 cd03115 SRP The signal recogni 94.3 0.051 1.1E-06 52.9 4.4 35 332-366 2-39 (173)
485 TIGR00235 udk uridine kinase. 94.3 0.036 7.8E-07 55.9 3.4 25 331-355 7-31 (207)
486 TIGR03880 KaiC_arch_3 KaiC dom 94.3 0.19 4.1E-06 51.1 8.6 35 330-364 16-53 (224)
487 PRK05986 cob(I)alamin adenolsy 94.2 0.26 5.7E-06 49.8 9.4 25 330-354 22-46 (191)
488 TIGR00017 cmk cytidylate kinas 94.2 0.046 1E-06 56.1 4.1 29 331-359 3-31 (217)
489 PF01926 MMR_HSR1: 50S ribosom 94.2 0.18 3.9E-06 45.6 7.5 21 333-353 2-22 (116)
490 cd03227 ABC_Class2 ABC-type Cl 94.2 0.2 4.4E-06 48.6 8.2 21 331-351 22-42 (162)
491 PRK06761 hypothetical protein; 94.2 0.055 1.2E-06 57.9 4.6 32 331-362 4-35 (282)
492 KOG0055 Multidrug/pheromone ex 94.1 0.3 6.5E-06 60.9 11.2 45 322-366 370-417 (1228)
493 PF00625 Guanylate_kin: Guanyl 94.1 0.072 1.6E-06 52.6 5.0 28 331-358 3-30 (183)
494 PRK13889 conjugal transfer rel 94.1 0.12 2.7E-06 63.7 7.9 89 331-434 363-458 (988)
495 COG3839 MalK ABC-type sugar tr 94.0 0.035 7.5E-07 60.7 2.9 33 322-354 20-53 (338)
496 COG1124 DppF ABC-type dipeptid 94.0 0.038 8.2E-07 57.6 3.0 45 322-366 24-71 (252)
497 PRK14730 coaE dephospho-CoA ki 94.0 0.048 1E-06 54.9 3.7 33 332-366 3-35 (195)
498 PRK09354 recA recombinase A; P 94.0 0.24 5.2E-06 54.6 9.3 79 331-409 61-152 (349)
499 TIGR00959 ffh signal recogniti 94.0 0.27 5.9E-06 55.6 9.9 37 330-366 99-139 (428)
500 PRK00023 cmk cytidylate kinase 94.0 0.049 1.1E-06 56.1 3.7 30 331-360 5-34 (225)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-69 Score=573.72 Aligned_cols=445 Identities=60% Similarity=0.886 Sum_probs=377.4
Q ss_pred cccccCCCCCCCCCCCCCCceEe-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhcccccChHHH
Q 005637 207 SITSSYGDPPEVWQPPGDGIAVR-VNGQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERA 285 (686)
Q Consensus 207 ~~~~~~~~~~~~w~~~g~~~~~~-~~~~~~~~~~gGgg~g~~g~~~~~~~~~g~~~~~~~~t~~el~~~Ld~~VvGqd~a 285 (686)
.-++|..+|++.|.+ +.+++.. ....--......+. ..+ ...-..|.+-.-.+..++|++|++.||++||||+.|
T Consensus 78 ~~~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~--~~~-~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGA--KPG-KLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred ccccccCCchhhccC-CCCeEEeeccchhhhhhhcccC--CCC-CCCccccccccccCCCCChHHHHHHhhhheechhhh
Confidence 457788899999976 4556554 11111111111111 000 011112223333447899999999999999999999
Q ss_pred HHHHHHHHHhhHHHHhhhh--hcccccCCCC--------------------------CCCCCCCCCccccccCceEEEEc
Q 005637 286 KKVLSVAVYNHYMRIYNES--SQKRSAGESS--------------------------SCTTDGVDDDTVELEKSNILLMG 337 (686)
Q Consensus 286 K~~L~~aV~~~~~r~~~~~--~~r~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~vLL~G 337 (686)
|+.|..+|||||+|+++.. .++..++.+. ...+...+++.+++.++|+||+|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745|consen 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred hheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEEC
Confidence 9999999999999999832 2211111110 01122234447999999999999
Q ss_pred cCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC
Q 005637 338 PTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (686)
Q Consensus 338 PPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~ 417 (686)
|+|+|||+||+.||+.+++||...||+.++++||+|++++..+.+++..+.+++++++.||+||||+||+.....+.+..
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred CCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc----ccc
Q 005637 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRA 493 (686)
Q Consensus 418 ~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~----~~~ 493 (686)
+|++||+||++||+++||++|+||++|..+..+++.++|||+||+|||.|+|.+||++|.+|+.+..|||+.+ ++.
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745|consen 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 666
Q ss_pred cccc-CCCchh-hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcc
Q 005637 494 NMRA-GGVTDA-VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (686)
Q Consensus 494 ~~~~-~~~~~~-~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l 571 (686)
++.. ++.+.. ...+.+++.+++.||+.+|++|||++||+++++|.+|++++|.+||+++.++|.+||+++|.+.++++
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745|consen 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred hcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeE
Confidence 6655 344333 34556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc-CCCcceEEcCCChHHH
Q 005637 572 HFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGAKILYGKGALDR 650 (686)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~-~g~~~~i~~~~~~l~~ 650 (686)
+||++|++.|++.+..+++|||+||.++|+++.++|+++|.. +|..|.||++.|.+.. +++..+++.+.+.++.
T Consensus 474 ~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI~~V~Vdee~v~g~~~~~~s~~~~~~~~~~~~ 548 (564)
T KOG0745|consen 474 HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DIKAVLVDEEAVKGEKEPGYSRKILKGDEVLER 548 (564)
T ss_pred EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ceEEEEecHHHhcccCCCccchhhhcccchhhh
Confidence 999999999999999999999999999999999999999954 4999999999999988 7899999998889999
Q ss_pred HHHHHhhhhh
Q 005637 651 YLAQHKRKDL 660 (686)
Q Consensus 651 ~~~~~~~~~~ 660 (686)
|+.+.+.++.
T Consensus 549 ~~se~~~~~~ 558 (564)
T KOG0745|consen 549 YVSETESKDG 558 (564)
T ss_pred hccccccccC
Confidence 9988776664
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-66 Score=533.39 Aligned_cols=345 Identities=61% Similarity=0.990 Sum_probs=325.7
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCCh
Q 005637 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (686)
Q Consensus 263 ~~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTG 342 (686)
...++|+++++.||++|+||+.||+.|..+|+|||+|+..... ...+++.++|+||+||+|+|
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~-----------------~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKED-----------------NDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCC-----------------CCceeeeeccEEEECCCCCc
Confidence 3579999999999999999999999999999999999865431 12388889999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 343 KT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
||+||+.+|+.+++||...|+++++++||+|++++..+.+++..+++++++|+.|||||||||++.++..+.++.+|++|
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
|++|++||+++||+..+||.+|.++++..+.++|||+|++|||+|+|.+|++.+.+|.....|||++++... ..
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------SK 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987542 12
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
......++..++|+||+++|++|||++|++.+..+.+|+++++.+||.++.|++.+||+++|++.++++.|+++|++.+|
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA 343 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIA 343 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHH
Confidence 23457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc
Q 005637 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (686)
Q Consensus 583 ~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~ 634 (686)
+++..+.+|||+||.++|.++.+.|+++|..+ .+.+++|+++.|.+..
T Consensus 344 ~~A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 344 KKAIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCC
Confidence 99999999999999999999999999999875 6899999999998765
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=8.9e-51 Score=446.43 Aligned_cols=343 Identities=62% Similarity=0.987 Sum_probs=307.4
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
.++|+++++.|+++|+||++||+.|..++++||+|+....... ..+.++..++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~----------------~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD----------------DDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc----------------cccccCCceEEEEcCCCCCHH
Confidence 7899999999999999999999999999999999875432110 134455689999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHH
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (686)
++|+++|+.++.||+.++++.+.+++|+|.+.+..+..++..+.+.++.+.++||||||||++.+.+.+.+.++|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999999899999998888888888877778888999999999999998766566788999999
Q ss_pred HHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005637 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (686)
Q Consensus 425 vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~ 504 (686)
+|++||++|||+.+.+|.+|..+.+....+.|+|+|++|||+|+|.++++++..|.....+||..+.... ....
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~------~~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK------KEKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc------cccc
Confidence 9999999999999999988888888888899999999999999999999999999988999997653321 0111
Q ss_pred hHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
....+++.+.++||++++|+|||++|+|.++.|.+|+++++.+|+..+++.+.+||++.++.+++.+.++++++++|++.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 12678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccc
Q 005637 585 AISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 585 a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
+|+..+|||+|+++|++.+.+.|+++|..+ .+..++||++.|.+.
T Consensus 357 ~~~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~ 401 (412)
T PRK05342 357 AIERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGK 401 (412)
T ss_pred CCCCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccc
Confidence 999999999999999999999999999754 467899999998755
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3.1e-50 Score=440.70 Aligned_cols=344 Identities=61% Similarity=0.972 Sum_probs=305.9
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChH
Q 005637 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (686)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (686)
..++|.++++.|+++|+||++||+.+..++++||+|+......+ .+..+++.+.++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 36899999999999999999999999999999999874321100 0112445568999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchH
Q 005637 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 344 T~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
|++|+++|+.++.||..++++.+.+++|+|++.+..+..++..+++.++.+.+|||||||||++++++.+.+.++|++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999999888999999888898888888888888999999999999999987766788999999
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~ 503 (686)
++|++||++|||..++||..|..+.+....+.|+|+|++|||+|+|.++++++..+.....+||..+.... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999988888888888899999999999999999999999988887889997543211 1
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHH
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~ 583 (686)
.....+++.+.++|+++++|+|||++|+|.++.|.+|+.+++.+|+..+++++.++|++.++.+++.+.++++|+++|++
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHH
Confidence 12246777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccc
Q 005637 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 584 ~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
.+|+..+|||+|+++|++.+.+.|+++|..+ .+..++||++.+.+.
T Consensus 362 ~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~ 407 (413)
T TIGR00382 362 KALERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQ 407 (413)
T ss_pred hCCCCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCc
Confidence 9999999999999999999999999999864 567899999998654
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=1.8e-42 Score=376.09 Aligned_cols=286 Identities=44% Similarity=0.714 Sum_probs=246.4
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
.+|+++.++|+++|+||++||+.+..++++||+|...... . .-+.++.++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~------~------------~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE------L------------KDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc------c------------ccccCCceEEEECCCCCCHHH
Confidence 4799999999999999999999999999999998532110 0 112345899999999999999
Q ss_pred HHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhc---------------------------------ch---
Q 005637 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS---------------------------------DY--- 389 (686)
Q Consensus 346 LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a---------------------------------~~--- 389 (686)
+|+++|+.++.||+.++++.+.+++|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999888999988788887776554 00
Q ss_pred ------------------------------hh------------------------------------------------
Q 005637 390 ------------------------------NV------------------------------------------------ 391 (686)
Q Consensus 390 ------------------------------~v------------------------------------------------ 391 (686)
.+
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 00
Q ss_pred ---------------------HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCC
Q 005637 392 ---------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (686)
Q Consensus 392 ---------------------e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~ 450 (686)
..++.||||||||||+..+. .+.++|+++++||+.||++|||+.+++
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 13588999999999999864 345889999999999999999999875
Q ss_pred CCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcc
Q 005637 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (686)
Q Consensus 451 g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R 530 (686)
+...|+|+|++|||+|+|.. ++|.| ++|||++|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQL-----------------------------------------AKPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12389999999999999853 12233 67999999
Q ss_pred cCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCC-----CCCChhHHHHHHHHHHHH
Q 005637 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (686)
Q Consensus 531 ~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~-----~~~GAR~Lr~vIe~il~~ 605 (686)
||+++.+.+|+.+++.+||+++.++|.+||+++|+..|+++.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999886 799999999999999999
Q ss_pred HHhcCCCCcCCCCccceEEEchhccccc
Q 005637 606 AMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 606 al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
.+++.|+. .+..++||+++|...
T Consensus 404 ~~fe~p~~-----~~~~v~I~~~~V~~~ 426 (441)
T TIGR00390 404 ISFEAPDL-----SGQNITIDADYVSKK 426 (441)
T ss_pred HHhcCCCC-----CCCEEEECHHHHHhH
Confidence 99999985 357899999988643
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.4e-42 Score=377.20 Aligned_cols=287 Identities=44% Similarity=0.706 Sum_probs=247.3
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
..+|+++.+.|+++|+||++||+.+..++++||+|...... ...+..+.++||+||||||||
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~------------------~~~e~~~~~ILliGp~G~GKT 64 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE------------------LRDEVTPKNILMIGPTGVGKT 64 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc------------------cccccCCceEEEECCCCCCHH
Confidence 35899999999999999999999999999999987422110 112234589999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhc-------------------------------------
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS------------------------------------- 387 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a------------------------------------- 387 (686)
++|++||+.++.||+.+|++.+.++||+|.+.+..++.++..+
T Consensus 65 ~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~ 144 (443)
T PRK05201 65 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWG 144 (443)
T ss_pred HHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999999999988888888887655
Q ss_pred ----------------------------------c--h-----h------------------------------------
Q 005637 388 ----------------------------------D--Y-----N------------------------------------ 390 (686)
Q Consensus 388 ----------------------------------~--~-----~------------------------------------ 390 (686)
. . .
T Consensus 145 ~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~ 224 (443)
T PRK05201 145 EEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKI 224 (443)
T ss_pred ccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHH
Confidence 1 0 0
Q ss_pred -------------------hHh-hcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCC
Q 005637 391 -------------------VAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (686)
Q Consensus 391 -------------------ve~-a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~ 450 (686)
++. .+.||||||||||+..+.++ .+.|+++++||+.||++|||..+++
T Consensus 225 l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~---------- 292 (443)
T PRK05201 225 LIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST---------- 292 (443)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee----------
Confidence 122 48899999999999987432 4789999999999999999999875
Q ss_pred CCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcc
Q 005637 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (686)
Q Consensus 451 g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R 530 (686)
+...|+|+|++|||+|+|.. .+|.| ++|||++|
T Consensus 293 -k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 325 (443)
T PRK05201 293 -KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGR 325 (443)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999852 12233 67999999
Q ss_pred cCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCC-----CCCChhHHHHHHHHHHHH
Q 005637 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (686)
Q Consensus 531 ~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~-----~~~GAR~Lr~vIe~il~~ 605 (686)
||+++.+.+|+++++.+||+++.+++.+||+++|+..|+++.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCCcCCCCccceEEEchhccccc
Q 005637 606 AMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 606 al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
.+++.|+. .+..++||++.|...
T Consensus 406 ~~Fe~p~~-----~~~~v~I~~~~V~~~ 428 (443)
T PRK05201 406 ISFEAPDM-----SGETVTIDAAYVDEK 428 (443)
T ss_pred HhccCCCC-----CCCEEEECHHHHHHH
Confidence 99999986 357899999988653
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-38 Score=359.97 Aligned_cols=280 Identities=24% Similarity=0.390 Sum_probs=234.6
Q ss_pred CCCCCCCCCCCCCChHH----HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPKE----ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~e----l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+|+|+.+....+.+ +++.|.+.|+||++|++.|..+|. +.++|+.++++|
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr------------raRaGL~dp~rP----------- 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR------------RARAGLGDPNRP----------- 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH------------HHhcCCCCCCCC-----------
Confidence 47999999987666665 899999999999999999999995 346778888877
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
.+.+||.||+|||||.||++||..+. ..++++||+++. ++||+|++.+..+++.+++.++
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py------ 594 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY------ 594 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC------
Confidence 47999999999999999999999996 689999999996 4899999999999999998776
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
+||+||||+|.++. +++.||++|| +|+++|++|+ .||++|+++|||+|... +.+
T Consensus 595 -SViLlDEIEKAHpd--------------V~nilLQVlD--------dGrLTD~~Gr--~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 595 -SVILLDEIEKAHPD--------------VFNLLLQVLD--------DGRLTDGQGR--TVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred -eEEEechhhhcCHH--------------HHHHHHHHhc--------CCeeecCCCC--EEecceeEEEEecccch-HHH
Confidence 89999999999998 9999999999 8889999998 89999999999999542 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
... .++ .. ..........++ +.++..|+|||++|+|.+|.|.+|+.+++.+|+...++.
T Consensus 649 ~~~------~~~--~~-------~~~~~~~~~~v~------~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 649 LRD------ADG--DD-------FADKEALKEAVM------EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred Hhh------ccc--cc-------cchhhhHHHHHH------HHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 111 000 00 011122222333 345678999999999999999999999999999998777
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
+.++ +..+++.+.+++++.++|++++|++.+|||+|+++|++.+.+.+++....
T Consensus 708 l~~~----L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 708 LAKR----LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 7665 44679999999999999999999999999999999999999999876543
No 8
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=323.71 Aligned_cols=287 Identities=45% Similarity=0.720 Sum_probs=245.6
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
..+|+++..+||++|+||++||+.+.-++.|.|.|.+-...-| -++.|.|+|++||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr------------------~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELR------------------DEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHh------------------hccCccceEEECCCCCcHH
Confidence 4789999999999999999999999999999999854332211 2345689999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchh----------------------------------
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYN---------------------------------- 390 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~---------------------------------- 390 (686)
.+||.||+..+.||+.+.++.+++-||+|.+++++++++...+-..
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 9999999999999999999999999999999999999886533000
Q ss_pred --------------------------------------------------------------------------------
Q 005637 391 -------------------------------------------------------------------------------- 390 (686)
Q Consensus 391 -------------------------------------------------------------------------------- 390 (686)
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence
Q ss_pred ---------------------hHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCC
Q 005637 391 ---------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (686)
Q Consensus 391 ---------------------ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~ 449 (686)
-...+.|||||||||+++...+ .+++|+++|++|..||.++||..|.. .-|
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T-KyG----- 296 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST-KYG----- 296 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec-ccc-----
Confidence 0134689999999999998643 33449999999999999999988862 222
Q ss_pred CCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhc
Q 005637 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (686)
Q Consensus 450 ~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~ 529 (686)
.|.|..++||++|+|.- -+|+| ++|||.+
T Consensus 297 -----~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 297 -----PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred -----ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 68899999999999751 12233 6799999
Q ss_pred ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcC-----CCCCChhHHHHHHHHHHH
Q 005637 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILM 604 (686)
Q Consensus 530 R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~-----~~~~GAR~Lr~vIe~il~ 604 (686)
|||+.|.+.+|+.+|+.+||.++-++|.+||+.+++..|+.+.|+++|++.||+.+| ..+.|||-|..++|+++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 478899999999999999
Q ss_pred HHHhcCCCCcCCCCccceEEEchhccccc
Q 005637 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 605 ~al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
+..++.++... ..+.||.++|..-
T Consensus 406 diSFeA~d~~g-----~~v~Id~~yV~~~ 429 (444)
T COG1220 406 DISFEAPDMSG-----QKVTIDAEYVEEK 429 (444)
T ss_pred HhCccCCcCCC-----CeEEEcHHHHHHH
Confidence 99999998752 5788998887653
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-32 Score=318.71 Aligned_cols=276 Identities=21% Similarity=0.319 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCCCCh----HHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTP----KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~----~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+++|+.....+. ..+++.|.+.|+||++|++.|..+|..++ .++.++.+|
T Consensus 431 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~------------~gl~~~~kp----------- 487 (758)
T PRK11034 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSR------------AGLGHEHKP----------- 487 (758)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHh------------ccccCCCCC-----------
Confidence 579999998755444 34889999999999999999999996322 223333333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-----------cCcccccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
..++||+||||||||++|+++|+.++.+|+.+||+++.+ +||+|++....+.+.+... ..+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------PHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------CCcE
Confidence 368999999999999999999999999999999998743 5788877666676665543 4589
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHh
Q 005637 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (686)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~ 478 (686)
|||||||++++. +++.||++|| +|.+++..++ .+|++|++||+|+|.. .+...
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld--------~G~ltd~~g~--~vd~rn~iiI~TsN~g-~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMD--------NGTLTDNNGR--KADFRNVVLVMTTNAG-VRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHh--------cCeeecCCCc--eecCCCcEEEEeCCcC-HHHHh--
Confidence 999999999987 9999999999 4445555554 7899999999999843 33332
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHH
Q 005637 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (686)
Q Consensus 479 r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~k 558 (686)
+..+||..... ....+ +.++..|.|||++|+|.+|.|.+|+.+++.+|+...+.++.+
T Consensus 614 ---~~~~g~~~~~~-------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 614 ---RKSIGLIHQDN-------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred ---hcccCcccchh-------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 23467642110 01111 345667999999999999999999999999999886665544
Q ss_pred HHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 559 q~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
.++.+|+.+.++++++++|++.+|++.+|||+|+++|++.+.+.+++..-
T Consensus 672 ----~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 672 ----QLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred ----HHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999987643
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=5.2e-31 Score=312.99 Aligned_cols=288 Identities=25% Similarity=0.360 Sum_probs=223.5
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~----el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+|+|+.....+.. .+++.|.+.|+||++|++.|..++...+ .+..++.+|
T Consensus 482 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~------------~gl~~~~~p----------- 538 (821)
T CHL00095 482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRAR------------VGLKNPNRP----------- 538 (821)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHh------------hcccCCCCC-----------
Confidence 5699999987655543 4999999999999999999999996322 223333333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
...+||+||||||||++|++||+.+ ..+++.+|++++. ++||+|++....+...+...+
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------- 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP------- 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-------
Confidence 3578999999999999999999988 3679999998873 478999887777777666544
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
.+||+|||||++++. +++.||++|| +|++++..|+ .+|++|++||+|+|... +.
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le--------~g~~~d~~g~--~v~~~~~i~I~Tsn~g~--~~ 665 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILD--------DGRLTDSKGR--TIDFKNTLIIMTSNLGS--KV 665 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhc--------cCceecCCCc--EEecCceEEEEeCCcch--HH
Confidence 379999999999988 9999999999 5666676665 78999999999999753 22
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
+. .....+||....... ....+ ..+.+.+. +.++..|.|||++|+|.+|.|.||+.+++.+|+...+++
T Consensus 666 i~--~~~~~~gf~~~~~~~---~~~~~----~~~~~~~~--~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IE--TNSGGLGFELSENQL---SEKQY----KRLSNLVN--EELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HH--hhccccCCccccccc---ccccH----HHHHHHHH--HHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22 122457886532110 00011 12222222 235566999999999999999999999999999987777
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+...+++..-
T Consensus 735 l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 735 LFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 7655 3556899999999999999999999999999999999999999987654
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=7e-31 Score=308.51 Aligned_cols=276 Identities=23% Similarity=0.349 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCC----CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~----~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+++|+.... ....++++.|++.|+||++|++.|..++. +. +.+..++.+|
T Consensus 427 ~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~----~~--------~~g~~~~~~p----------- 483 (731)
T TIGR02639 427 AKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIK----RS--------RAGLGNPNKP----------- 483 (731)
T ss_pred HHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHH----HH--------hcCCCCCCCC-----------
Confidence 358999986643 33446999999999999999999999885 11 2233333333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
..++||+||||||||++|+++|+.++.+++.+||+++. .+||+|++.+..+.+.+... +.+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeE
Confidence 36799999999999999999999999999999999874 37899988777777766654 3489
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHh
Q 005637 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (686)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~ 478 (686)
|+|||||++++. +++.||++|| +|.+++..|+ .+|++|++||+|+|... +.+
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld--------~g~~~d~~g~--~vd~~~~iii~Tsn~g~-~~~--- 608 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMD--------YATLTDNNGR--KADFRNVILIMTSNAGA-SEM--- 608 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhc--------cCeeecCCCc--ccCCCCCEEEECCCcch-hhh---
Confidence 999999999987 9999999999 4555665554 78999999999999542 111
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHH
Q 005637 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (686)
Q Consensus 479 r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~k 558 (686)
.+..+||..... ...+ .+.++..|.|||++|+|.+|.|.||+.+++.+|++..++.+.+
T Consensus 609 --~~~~~~f~~~~~-------------~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 609 --SKPPIGFGSENV-------------ESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred --hhccCCcchhhh-------------HHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 122356632110 0111 2345677999999999999999999999999999987766654
Q ss_pred HHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 559 q~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+ +...++.+.++++++++|++++|+..+|||+|+++|++.+...+++...
T Consensus 668 ~----l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l 717 (731)
T TIGR02639 668 Q----LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEIL 717 (731)
T ss_pred H----HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHH
Confidence 4 4556889999999999999999999999999999999999999887544
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.6e-29 Score=300.06 Aligned_cols=280 Identities=20% Similarity=0.344 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~----el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+|+|+.+...+.. ++++.|.+.|+||++|++.|..++. +. +++..++.+|
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~----~~--------~~gl~~~~~p----------- 595 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIR----TA--------RAGLEDPRKP----------- 595 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHH----HH--------hcCCCCCCCC-----------
Confidence 3699999987555443 4999999999999999999999996 21 2333344333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
...+||+||||||||++|+++|+.+ ...++.+||+++. ++||+|++.+..+...+... +
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~-------p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK-------P 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC-------C
Confidence 3578999999999999999999998 3578999999874 36899998777777766654 4
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
.+||+||||+++++. +++.|+++|+ +|.+++..|+ .||++|.+||+|+|... +.+
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld--------~g~l~d~~Gr--~vd~~n~iiI~TSNlg~-~~~ 723 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFD--------KGVMEDGEGR--EIDFKNTVILLTSNAGS-DLI 723 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhh--------cceeecCCCc--EEeccccEEEEeCCCch-HHH
Confidence 589999999999887 9999999999 6666777776 79999999999999642 222
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
.... .++.. ..........+. ..++..|.|||++|++ +|.|.+|+.+++.+|+...++.
T Consensus 724 ~~~~-----~~~~~---------~~~~~~~~~~~~------~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 724 MALC-----ADPET---------APDPEALLEALR------PELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHhc-----cCccc---------CcchHHHHHHHH------HHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 2111 01000 000111111222 2345679999999997 8999999999999999998888
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+.+++.. ..++.+.++++++++|++.+++..+|||+|+++|++.+.+.+++..-
T Consensus 783 l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l 836 (852)
T TIGR03345 783 IARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836 (852)
T ss_pred HHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 7666433 23789999999999999999999999999999999999999987543
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=4.4e-28 Score=288.90 Aligned_cols=276 Identities=24% Similarity=0.374 Sum_probs=211.9
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~----el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+|+|+........ .+++.|.+.|+||+.|++.|..++. +. .+++.++.+|
T Consensus 538 ~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~----~~--------~~gl~~~~~p----------- 594 (852)
T TIGR03346 538 SRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIR----RS--------RAGLSDPNRP----------- 594 (852)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHH----HH--------hccCCCCCCC-----------
Confidence 4699999987555443 3888999999999999999999996 21 2233333333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
...+||+||||||||++|++||+.+ +.+++.+||+++. ++||+|++....+...+...+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p------- 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP------- 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-------
Confidence 3679999999999999999999987 4689999998773 367888876666666655543
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
.+||+||||+++++. +++.||++|| +|.+++..++ .+|++|++||+|+|... +.+
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~--------~g~l~d~~g~--~vd~rn~iiI~TSn~g~-~~~ 722 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLD--------DGRLTDGQGR--TVDFRNTVIIMTSNLGS-QFI 722 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHh--------cCceecCCCe--EEecCCcEEEEeCCcch-HhH
Confidence 379999999999988 9999999998 5666666654 89999999999999532 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
.... + +.........++ +.++..|.|||++|+|.++.|.|++.+++.+|+...++.
T Consensus 723 ~~~~------~------------~~~~~~~~~~~~------~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 723 QELA------G------------GDDYEEMREAVM------EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred hhhc------c------------cccHHHHHHHHH------HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 1100 0 000111111121 234567999999999999999999999999999987777
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+.++ +...++.+.++++++++|++++|+..+|||+|+++|++.+...+++...
T Consensus 779 l~~~----l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 779 LRKR----LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred HHHH----HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 6554 3445788999999999999999999999999999999999999887543
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=3.4e-28 Score=289.37 Aligned_cols=276 Identities=25% Similarity=0.414 Sum_probs=211.2
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~----el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|||+|+.+...+.. .+++.|.+.|+||+.|++.|..+|. +. .++..++.+|
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~----~~--------~~gl~~~~~p----------- 597 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIR----RS--------RAGLSDPNRP----------- 597 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHH----HH--------HhcccCCCCC-----------
Confidence 4799999998665543 4899999999999999999999996 21 2233333333
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc-----------ccCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
..++||+||||||||++|++||+.+ +.+|+.++|+++. ++||+|++.+..+...+... +
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~-------p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR-------P 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC-------C
Confidence 2579999999999999999999987 4579999998874 25778877666666555443 3
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
.+||+||||+++++. +++.|+++|+ +|.+++..++ .++++|.+||+|+|... + .
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile--------~g~l~d~~gr--~vd~rn~iiI~TSN~g~-~-~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLD--------DGRLTDGQGR--TVDFRNTVVIMTSNLGS-D-L 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHh--------hCceecCCce--EEeecccEEEEeCCcch-H-H
Confidence 489999999999987 9999999998 5555565554 78999999999999642 1 1
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
+.++ +| .. ........++ +.++..|.|||++|+|.++.|.|++.+++.+|++..++.
T Consensus 725 ~~~~-----~~--~~----------~~~~~~~~~~------~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 IQER-----FG--EL----------DYAHMKELVL------GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHh-----cc--cc----------chHHHHHHHH------HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1111 11 00 0111111122 234567999999999999999999999999999988777
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+.+++ +..++.+.++++++++|++++|+..+|||+|+++|++.+.+.+++..-
T Consensus 782 l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL 834 (857)
T PRK10865 782 LYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQIL 834 (857)
T ss_pred HHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHH
Confidence 65543 345778899999999999999999999999999999999998887543
No 15
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-26 Score=267.12 Aligned_cols=287 Identities=24% Similarity=0.350 Sum_probs=222.3
Q ss_pred CCCCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccc
Q 005637 253 DGCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL 328 (686)
Q Consensus 253 ~~~~~g~~~~~~~~----t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~ 328 (686)
..+|+++|+..... ....|++.|.+.|+||++|++.|..+|. +. +.+..++ .
T Consensus 534 ~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~----~s--------r~gl~~~-~----------- 589 (898)
T KOG1051|consen 534 VSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIR----RS--------RAGLKDP-N----------- 589 (898)
T ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHH----hh--------hcccCCC-C-----------
Confidence 46899999987654 4445999999999999999999999996 21 2222222 1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc--------cccCcccccHHHHHHHHHhhcchhhHhhcCc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL--------TQAGYVGEDVESILYKLLTVSDYNVAAAQQG 397 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l--------~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~g 397 (686)
+...+||.||+|+|||.||+++|..+ ...|+.+|++++ .++||+|++....+.+.+.+.++ +
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~-------s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY-------S 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc-------e
Confidence 24789999999999999999999998 346999999983 35899999999999999888776 7
Q ss_pred EEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHH
Q 005637 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (686)
Q Consensus 398 ILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~ 477 (686)
||+|||||+.++. +++.|+++|| +|+++|.+|+ .||++|+|||||+|... ..+.
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD--------~GrltDs~Gr--~Vd~kN~I~IMTsn~~~--~~i~ 716 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLD--------RGRLTDSHGR--EVDFKNAIFIMTSNVGS--SAIA 716 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHh--------cCccccCCCc--EeeccceEEEEecccch--Hhhh
Confidence 9999999999988 9999999999 7888999998 89999999999998532 1111
Q ss_pred hccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHh----cCCChhhhcccCeEEEccCcChHHHHHHHhhhH
Q 005637 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (686)
Q Consensus 478 ~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~----~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l 553 (686)
.... ..++-..... ...... .....-.+..+ ..|.|||++|++.++.|.+++.+++.+|+...+
T Consensus 717 ~~~~--~~~~l~~~~~----~~~~~~------~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 717 NDAS--LEEKLLDMDE----KRGSYR------LKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred cccc--cccccccchh----hhhhhh------hhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 1110 0111000000 000000 01112234555 789999999999999999999999999999877
Q ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 554 NALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 554 ~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
.++.++++. .++.+.+++.+...+..++|+..+|||.|++.|++.+.+.+.....
T Consensus 785 ~e~~~r~~~----~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l 839 (898)
T KOG1051|consen 785 TEIEKRLEE----RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL 839 (898)
T ss_pred HHHHHHhhh----hHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe
Confidence 777665544 3567889999999999999999999999999999999999987654
No 16
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.5e-24 Score=243.11 Aligned_cols=247 Identities=22% Similarity=0.304 Sum_probs=203.4
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChH
Q 005637 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (686)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (686)
...+.+..++.||+..+|.+++|+++.+.+.-.-. .+ .+...-++|+||||+||
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l-----~~---------------------~~kGpILcLVGPPGVGK 363 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL-----TK---------------------KLKGPILCLVGPPGVGK 363 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH-----hc---------------------cCCCcEEEEECCCCCCc
Confidence 45677789999999999999999999998851111 00 01125788999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecccccc--------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccc
Q 005637 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (686)
Q Consensus 344 T~LAraLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~ 415 (686)
|+|++.||+.++.+|++++...+.+ ..|+|.-++++++.+..... .+.+++||||||+..+
T Consensus 364 TSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss----- 432 (782)
T COG0466 364 TSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSS----- 432 (782)
T ss_pred hhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC------cCCeEEeechhhccCC-----
Confidence 9999999999999999999887753 56999999999988876543 4589999999999765
Q ss_pred cCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccc
Q 005637 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (686)
Q Consensus 416 ~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~ 495 (686)
..+| --++||++|| |+++..+.+++-.+.+|.++++||+|+|.-+
T Consensus 433 ~rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------------------ 477 (782)
T COG0466 433 FRGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------------------ 477 (782)
T ss_pred CCCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc------------------------
Confidence 2344 7889999999 8888888888888899999999999998421
Q ss_pred ccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
.++.+|+.|+. +|.+..|+++|..+|++.+ |..+..+.......++.|++
T Consensus 478 --------------------------tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~---LiPk~~~~~gL~~~el~i~d 527 (782)
T COG0466 478 --------------------------TIPAPLLDRME-VIRLSGYTEDEKLEIAKRH---LIPKQLKEHGLKKGELTITD 527 (782)
T ss_pred --------------------------cCChHHhccee-eeeecCCChHHHHHHHHHh---cchHHHHHcCCCccceeecH
Confidence 14567888887 8999999999999999974 44444444445556799999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
+|+..|.++ |+++.|+|+|++.|..++..+..++...
T Consensus 528 ~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 528 EAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred HHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999998 9999999999999999999998887664
No 17
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5e-24 Score=239.34 Aligned_cols=246 Identities=24% Similarity=0.340 Sum_probs=204.4
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
.......++.||+..+|.+++|+++.+.|.-... .+..+ ...++|+||||+|||
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kL--------------rgs~q------------GkIlCf~GPPGVGKT 452 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKL--------------RGSVQ------------GKILCFVGPPGVGKT 452 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhh--------------cccCC------------CcEEEEeCCCCCCcc
Confidence 4556668999999999999999999999851111 11112 267889999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccc--------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccccc
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~ 416 (686)
++||.||+.++..|++++...+++ ..|+|..+++++..+....- .+.+++||||||+... .
T Consensus 453 SI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDKlG~g-----~ 521 (906)
T KOG2004|consen 453 SIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDKLGSG-----H 521 (906)
T ss_pred cHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhhhhCCC-----C
Confidence 999999999999999999877753 56999999999988876543 4579999999999742 3
Q ss_pred CCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccc
Q 005637 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (686)
Q Consensus 417 ~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~ 496 (686)
++| --++||++|| |+++..+.+++-.+.+|.+.++||||+|..+
T Consensus 522 qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id------------------------- 565 (906)
T KOG2004|consen 522 QGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID------------------------- 565 (906)
T ss_pred CCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc-------------------------
Confidence 445 7899999999 8899889999999999999999999998432
Q ss_pred cCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH
Q 005637 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (686)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e 576 (686)
.+.|+|+.|+. +|.+..|..+|..+|++.+ |..+..+......-.+.++++
T Consensus 566 -------------------------tIP~pLlDRME-vIelsGYv~eEKv~IA~~y---Lip~a~~~~gl~~e~v~is~~ 616 (906)
T KOG2004|consen 566 -------------------------TIPPPLLDRME-VIELSGYVAEEKVKIAERY---LIPQALKDCGLKPEQVKISDD 616 (906)
T ss_pred -------------------------cCChhhhhhhh-eeeccCccHHHHHHHHHHh---hhhHHHHHcCCCHHhcCccHH
Confidence 25688999998 7999999999999999974 666666555555567889999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 577 ALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 577 Al~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
|+..|.++ |+.+.|+|.|++-|+.++..+..++.+.
T Consensus 617 al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 617 ALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 9999999999999999999988776543
No 18
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=8.3e-23 Score=215.90 Aligned_cols=239 Identities=20% Similarity=0.256 Sum_probs=167.0
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
.....++.+.|++.++|++.+|++|.+.+.... . ... +...+...+. +..++||+||||||||
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~--~-~~~--~~~~g~~~~~------------~~~~ill~G~pGtGKT 73 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLL--I-DRL--RKNLGLTSSN------------PGLHMSFTGSPGTGKT 73 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--H-HHH--HHHcCCCCCC------------CCceEEEECCCCCCHH
Confidence 345667999999889999999999998875211 1 111 1112222211 1368999999999999
Q ss_pred HHHHHHHHhcC-------CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC
Q 005637 345 LLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (686)
Q Consensus 345 ~LAraLA~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~ 417 (686)
++|+++|+.+. .+++.++++++. ..|+|+.. ..+..++.. +.+|||||||+|.+...+. .
T Consensus 74 ~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~~-~~~~~~l~~-------a~ggVLfIDE~~~l~~~~~----~ 140 (287)
T CHL00181 74 TVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHTA-PKTKEVLKK-------AMGGVLFIDEAYYLYKPDN----E 140 (287)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccch-HHHHHHHHH-------ccCCEEEEEccchhccCCC----c
Confidence 99999998762 368999988876 56788763 334555544 3568999999999865421 1
Q ss_pred CCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccccc
Q 005637 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (686)
Q Consensus 418 ~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~ 497 (686)
+..+.++++.|+++||. ...++++|++|+...|+...
T Consensus 141 -~~~~~e~~~~L~~~me~---------------------~~~~~~vI~ag~~~~~~~~~--------------------- 177 (287)
T CHL00181 141 -RDYGSEAIEILLQVMEN---------------------QRDDLVVIFAGYKDRMDKFY--------------------- 177 (287)
T ss_pred -cchHHHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHHH---------------------
Confidence 22345699999999982 11357888887643332221
Q ss_pred CCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH
Q 005637 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (686)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA 577 (686)
...|+|.+||+.+|.|++++.+++.+|+...+++. ...+++++
T Consensus 178 ------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-------------~~~l~~~~ 220 (287)
T CHL00181 178 ------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-------------QYQLTPEA 220 (287)
T ss_pred ------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-------------cCCCChhH
Confidence 13599999999999999999999999998755443 34456665
Q ss_pred HHHHHH----hcCCCCCC-hhHHHHHHHHHHHHHHhcCCCC
Q 005637 578 LRLIAK----KAISKNTG-ARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 578 l~~La~----~a~~~~~G-AR~Lr~vIe~il~~al~e~~~~ 613 (686)
...+.+ ......+| +|.+++++++++.....++...
T Consensus 221 ~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 221 EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 544444 44445555 9999999999999888776554
No 19
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=6e-23 Score=216.61 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=171.0
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhH-HHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~-~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (686)
....+++.++|++.++|++.+|+.|.+.+.... .+.+ ...|.... .+..++||+|||||||
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r------~~~g~~~~------------~~~~~vll~G~pGTGK 71 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLR------QRLGLASA------------APTLHMSFTGNPGTGK 71 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH------HHhCCCcC------------CCCceEEEEcCCCCCH
Confidence 455678999999889999999999998775211 1111 11222111 1236999999999999
Q ss_pred HHHHHHHHHhcC-------CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccccc
Q 005637 344 TLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (686)
Q Consensus 344 T~LAraLA~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~ 416 (686)
|++|+++|+.+. .+|+.+++.++. ..|+|+.. ..+..++.. +.+||||||||+.+...+..
T Consensus 72 T~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-~~~~g~~~-~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~~--- 139 (284)
T TIGR02880 72 TTVALRMAQILHRLGYVRKGHLVSVTRDDLV-GQYIGHTA-PKTKEILKR-------AMGGVLFIDEAYYLYRPDNE--- 139 (284)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecHHHHh-Hhhcccch-HHHHHHHHH-------ccCcEEEEechhhhccCCCc---
Confidence 999999998773 379999998886 46888773 445555544 45699999999998643211
Q ss_pred CCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccc
Q 005637 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (686)
Q Consensus 417 ~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~ 496 (686)
...+.++++.|++.|+. + ..++++|++|+...++...
T Consensus 140 --~~~~~~~~~~Ll~~le~--------~-------------~~~~~vI~a~~~~~~~~~~-------------------- 176 (284)
T TIGR02880 140 --RDYGQEAIEILLQVMEN--------Q-------------RDDLVVILAGYKDRMDSFF-------------------- 176 (284)
T ss_pred --cchHHHHHHHHHHHHhc--------C-------------CCCEEEEEeCCcHHHHHHH--------------------
Confidence 12344589999999982 1 1357788887633222211
Q ss_pred cCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH
Q 005637 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (686)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e 576 (686)
.+.|+|.+||+..|.|++|+.+|+.+|+...++.. ...++++
T Consensus 177 -------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-------------~~~l~~~ 218 (284)
T TIGR02880 177 -------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-------------QYRFSAE 218 (284)
T ss_pred -------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-------------ccccCHH
Confidence 24599999999999999999999999998754443 3457888
Q ss_pred HHHHHHHh-----cCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 577 ALRLIAKK-----AISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 577 Al~~La~~-----a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
+++.+.++ ..+|..++|+|++++++++.....++...
T Consensus 219 a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 219 AEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888774 22677789999999999999888776543
No 20
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-23 Score=229.95 Aligned_cols=287 Identities=18% Similarity=0.274 Sum_probs=206.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.|+|...+...+.+.+. + .+....+||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r--------------------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----R--------------------------IAKTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----h--------------------------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 48999988888887764 1 11123799999999999999999997766
Q ss_pred CCCEEEEeccccc----ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.||+.+||+.+. ++..+|+..+....+.-...++.++.|++|.||||||..|+.. +|..||
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLL 361 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLL 361 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHH
Confidence 6799999999884 4778888855544444334678899999999999999999998 999999
Q ss_pred HHHhCce-eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 431 KMLEGTV-VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 431 ~lLEg~~-v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
++|+.+. .+| +....+.+| +.+|+|+| .+|+++++++.||.+++|+.++...
T Consensus 362 RVLQEkei~rv--------G~t~~~~vD---VRIIAATN-~nL~~~i~~G~FReDLYYRLNV~~i--------------- 414 (560)
T COG3829 362 RVLQEKEIERV--------GGTKPIPVD---VRIIAATN-RNLEKMIAEGTFREDLYYRLNVIPI--------------- 414 (560)
T ss_pred HHHhhceEEec--------CCCCceeeE---EEEEeccC-cCHHHHHhcCcchhhheeeeceeee---------------
Confidence 9998443 333 333445566 67777766 7899999999999999998877543
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccc-cCHHHHHHHHHhcCCC
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRLIAKKAISK 588 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~-~s~eAl~~La~~a~~~ 588 (686)
.+|+|+.|- +|+..++..+++.+.++| +..+. ++++++..|.+ |+|
T Consensus 415 -------------~iPPLReR~-----------eDI~~L~~~Fl~k~s~~~-------~~~v~~ls~~a~~~L~~--y~W 461 (560)
T COG3829 415 -------------TIPPLRERK-----------EDIPLLAEYFLDKFSRRY-------GRNVKGLSPDALALLLR--YDW 461 (560)
T ss_pred -------------cCCCcccCc-----------chHHHHHHHHHHHHHHHc-------CCCcccCCHHHHHHHHh--CCC
Confidence 345566665 456666666555554444 32444 99999999999 577
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc-CC--Ccce--EEcCCChHHHHHHHHhhhhhh-h
Q 005637 589 NTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RG--CGAK--ILYGKGALDRYLAQHKRKDLE-L 662 (686)
Q Consensus 589 ~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~-~g--~~~~--i~~~~~~l~~~~~~~~~~~~~-~ 662 (686)
+++.|+|+|+||+++. +.. +.-+|+.+++-... +. .... .....+.++.++++.++..++ .
T Consensus 462 PGNVRELeNviER~v~--~~~-----------~~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~I~~a 528 (560)
T COG3829 462 PGNVRELENVIERAVN--LVE-----------SDGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKHLIREA 528 (560)
T ss_pred CchHHHHHHHHHHHHh--ccC-----------CcceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHHHHHHH
Confidence 8888999999999875 111 11124444433111 11 1111 224567789999988888754 4
Q ss_pred hhhccCCCCCCCcccCccc
Q 005637 663 QTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~ 681 (686)
+.+..|+....+..+++|.
T Consensus 529 L~~~~gn~~~aAk~LgIsr 547 (560)
T COG3829 529 LERHGGNKSKAAKELGISR 547 (560)
T ss_pred HHHhCCCHHHHHHHhCCCH
Confidence 5666778888898888874
No 21
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.90 E-value=1.5e-22 Score=238.84 Aligned_cols=257 Identities=18% Similarity=0.278 Sum_probs=190.8
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChH
Q 005637 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (686)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (686)
...+..+.++.|++.++|++++|+.+.+.+...... .. .....++|+|||||||
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~------~~--------------------~~g~~i~l~GppG~GK 362 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV------NK--------------------IKGPILCLVGPPGVGK 362 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc------cc--------------------CCCceEEEECCCCCCH
Confidence 456778899999999999999999999877521110 00 0125799999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecccccc--------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccc
Q 005637 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (686)
Q Consensus 344 T~LAraLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~ 415 (686)
|++++.+|+.++.+|++++++...+ ..|.|...+..+..+. .+. ..+.||+|||||++.+..
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~-~~~-----~~~~villDEidk~~~~~---- 432 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMA-KVG-----VKNPLFLLDEIDKMSSDM---- 432 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHH-hcC-----CCCCEEEEEChhhccccc----
Confidence 9999999999999999999876542 2466666555554443 222 235699999999998651
Q ss_pred cCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccc
Q 005637 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (686)
Q Consensus 416 ~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~ 495 (686)
.+| .+++||++|| |++.....+.+-.+.+|.++++||+|+|+.
T Consensus 433 -~g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~------------------------- 475 (784)
T PRK10787 433 -RGD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM------------------------- 475 (784)
T ss_pred -CCC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC-------------------------
Confidence 123 7899999998 222222333444467899999999998731
Q ss_pred ccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
.+.|+|++|+. +|.|.+|+.+++.+|+++++. .++.+ .....+..+.+++
T Consensus 476 --------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~--~k~~~-~~~l~~~~l~i~~ 525 (784)
T PRK10787 476 --------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL--PKQIE-RNALKKGELTVDD 525 (784)
T ss_pred --------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh--HHHHH-HhCCCCCeEEECH
Confidence 15689999996 799999999999999998652 12222 2344556899999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchh
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEE 628 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee 628 (686)
+++++|++ +|+..+|||+|++.|++++...+.+....+ .+..+.|+.+
T Consensus 526 ~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~ 573 (784)
T PRK10787 526 SAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK----SLKHIEINGD 573 (784)
T ss_pred HHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHH
Confidence 99999998 799999999999999999999998765432 2344555554
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.7e-23 Score=230.38 Aligned_cols=221 Identities=24% Similarity=0.333 Sum_probs=175.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.++|..+.+......+- | . -|+++||||||||||||++||++|++++.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~----G---i------------~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARF----G---I------------SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHh----c---C------------CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 47789999999999998776654333321 0 0 235899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.+.+.++. +.|+|++ ++.+++.|+.++. +.++|||+||||.+..+|++ +.+ ++ .++++++||..|||..
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g-~~~-~v-~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGG-SSS-GV-TDRVLSQLLTEMDGLE 566 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCC-Ccc-ch-HHHHHHHHHHHccccc
Confidence 9999999998 7899999 8999999999875 67899999999999999873 222 33 3459999999999632
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
..+++++|+++|-.++
T Consensus 567 -------------------~~k~V~ViAATNRpd~--------------------------------------------- 582 (693)
T KOG0730|consen 567 -------------------ALKNVLVIAATNRPDM--------------------------------------------- 582 (693)
T ss_pred -------------------ccCcEEEEeccCChhh---------------------------------------------
Confidence 2367999999884331
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GAR~ 594 (686)
+.|++++ |||.+|.++..+.+...+|++.... ++.++++ -++.|++. +..+..++
T Consensus 583 -----ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k---------------kmp~~~~vdl~~La~~--T~g~SGAe 640 (693)
T KOG0730|consen 583 -----IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK---------------KMPFSEDVDLEELAQA--TEGYSGAE 640 (693)
T ss_pred -----cCHHHcCCcccceeEeecCccHHHHHHHHHHHHh---------------cCCCCccccHHHHHHH--hccCChHH
Confidence 3355665 9999999999999999999976322 4455555 57888884 56677799
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005637 595 LRSLLENILMDAMYEIPD 612 (686)
Q Consensus 595 Lr~vIe~il~~al~e~~~ 612 (686)
|..++++....++.+..+
T Consensus 641 l~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 641 IVAVCQEAALLALRESIE 658 (693)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999877443
No 23
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.89 E-value=4e-22 Score=236.04 Aligned_cols=254 Identities=22% Similarity=0.302 Sum_probs=183.2
Q ss_pred CCCCCCCC---CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCce
Q 005637 256 WGGSNLGN---KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN 332 (686)
Q Consensus 256 ~~g~~~~~---~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~ 332 (686)
|+++|..+ ...+...+++.|++.++||+++|+.+.+.+..+..+ . . ..+.+
T Consensus 296 ~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~-----------~------------~~~~~ 349 (775)
T TIGR00763 296 LTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G-----------K------------MKGPI 349 (775)
T ss_pred HHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c-----------C------------CCCce
Confidence 34444433 234566789999999999999999999877532211 0 0 01247
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc--------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
+||+||||||||++|+++|+.++.+|+.++++.+.. ..|+|...+... ..+..+. ..+.|||||||
T Consensus 350 lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~-~~l~~~~-----~~~~villDEi 423 (775)
T TIGR00763 350 LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII-QGLKKAK-----TKNPLFLLDEI 423 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH-HHHHHhC-----cCCCEEEEech
Confidence 999999999999999999999999999998765431 457777655444 3343332 23469999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCC
Q 005637 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (686)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ 484 (686)
|++.+.. .+| ..++||++||.. .++.+.+ ......+|.++++||+|+|..+
T Consensus 424 dk~~~~~-----~~~-----~~~aLl~~ld~~-----~~~~f~d-~~~~~~~d~s~v~~I~TtN~~~------------- 474 (775)
T TIGR00763 424 DKIGSSF-----RGD-----PASALLEVLDPE-----QNNAFSD-HYLDVPFDLSKVIFIATANSID------------- 474 (775)
T ss_pred hhcCCcc-----CCC-----HHHHHHHhcCHH-----hcCcccc-ccCCceeccCCEEEEEecCCch-------------
Confidence 9998641 123 678999999821 0122222 2223478899999999988321
Q ss_pred CCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHH
Q 005637 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (686)
Q Consensus 485 igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~ 564 (686)
.+.|+|++|+. +|.|++|+.+++.+|++..+. .+..+..
T Consensus 475 -------------------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~---~~~~~~~ 513 (775)
T TIGR00763 475 -------------------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI---PKALEDH 513 (775)
T ss_pred -------------------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH---HHHHHHc
Confidence 25689999996 789999999999999987542 3322222
Q ss_pred hhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 565 ~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
......+.++++++.+|++ .|+...|+|+|++.|++++..++.++..
T Consensus 514 ~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 514 GLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred CCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 2222367899999999999 5999999999999999999999887664
No 24
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=1.4e-21 Score=203.33 Aligned_cols=230 Identities=17% Similarity=0.325 Sum_probs=162.5
Q ss_pred HHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHH
Q 005637 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 272 ~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA 351 (686)
.++|++ ++|++.+|+.|.+.+...-.. ..+...|...++. ..+++|+||||||||++|+++|
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~~~~-----~~~~~~g~~~~~~------------~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWIQIN-----EKRKEEGLKTSKQ------------VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHHHHH-----HHHHHcCCCCCCC------------cceEEEEcCCCCCHHHHHHHHH
Confidence 356777 699999999999877422111 1111222222222 2799999999999999999999
Q ss_pred Hhc-------CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHH
Q 005637 352 RYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (686)
Q Consensus 352 ~~l-------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (686)
+.+ ..+++.++++++. ..|+|+. ...+.+++..+ .++||||||||.+... +....+..
T Consensus 64 ~~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~ 128 (261)
T TIGR02881 64 KLFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKE 128 (261)
T ss_pred HHHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHH
Confidence 875 2468888998887 5688876 45566666554 4589999999999642 11223345
Q ss_pred HHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005637 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (686)
Q Consensus 425 vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~ 504 (686)
+++.|++.||.. ..++++|++++..+++...
T Consensus 129 ~i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~---------------------------- 159 (261)
T TIGR02881 129 AIDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL---------------------------- 159 (261)
T ss_pred HHHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH----------------------------
Confidence 899999999821 1346777777643322211
Q ss_pred hHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
.+.|+|.+||+..+.|++++.+++.+|++..+.. ....++++++.+|++.
T Consensus 160 -----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------------~~~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 160 -----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------------REYKLTEEAKWKLREH 209 (261)
T ss_pred -----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------------cCCccCHHHHHHHHHH
Confidence 1458899999999999999999999999864322 1567999999998764
Q ss_pred c-------CCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 585 A-------ISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 585 a-------~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
. -....+||.++++++.++.++...+...
T Consensus 210 ~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 210 LYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2334569999999999999888776544
No 25
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.89 E-value=2.5e-23 Score=204.24 Aligned_cols=166 Identities=40% Similarity=0.600 Sum_probs=127.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcCC----CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~----pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
|..++||+||+|||||.+|+++|+.+.. +++.+||+++.+ +.+.+..+..+...+++.+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3589999999999999999999999996 999999999975 33445566777777778888888899999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCC
Q 005637 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (686)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ 484 (686)
||+++. .+.+.|++++.+|+.||++||+..+ ++..+ ..+|++|++||||+|+.+.......+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~--------~d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTL--------TDSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEE--------EETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhcccce--------ecccc--eEEEeCCceEEEecccccchhhhhhccc---
Confidence 999986 4467899999999999999994443 34455 4899999999999999876555433211
Q ss_pred CCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeE
Q 005637 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (686)
Q Consensus 485 igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~i 534 (686)
. ...........++++++|+|||++|||.+
T Consensus 142 ------------------~--~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ------------------E--AIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ------------------T--CCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ------------------c--ccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0 00111112224688899999999999964
No 26
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-22 Score=220.06 Aligned_cols=229 Identities=20% Similarity=0.326 Sum_probs=178.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.|||+..|.+.+.+.|. .|+....+|||.|++||||..+||+|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~------------------------------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE------------------------------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH------------------------------HHhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 48899999998888885 122334899999999999999999998877
Q ss_pred CCCEEEEeccccc----ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.||+.+||+.+. ++..+|+. ...++..+....+.++.|.+|.||||||..++.+ +|.+||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 5799999999884 47788887 5667777777788899999999999999999998 999999
Q ss_pred HHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 431 KMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 431 ~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
++|+ |.+-+ -+..+++.|| +.+|+++| .||+++++++.|+.+++|+.++...
T Consensus 339 RvLQegEieR--------vG~~r~ikVD---VRiIAATN-RDL~~~V~~G~FRaDLYyRLsV~Pl--------------- 391 (550)
T COG3604 339 RVLQEGEIER--------VGGDRTIKVD---VRVIAATN-RDLEEMVRDGEFRADLYYRLSVFPL--------------- 391 (550)
T ss_pred HHHhhcceee--------cCCCceeEEE---EEEEeccc-hhHHHHHHcCcchhhhhhccccccc---------------
Confidence 9997 44433 3455667787 66777766 8999999999999999987766432
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCC-ccccCHHHHHHHHHhcCCC
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAISK 588 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv-~l~~s~eAl~~La~~a~~~ 588 (686)
+.|+|+.|=+ |+.-++..++.++.++ .|. .+.++++|++.|.+ |.|
T Consensus 392 -------------~lPPLRER~~-----------DIplLA~~Fle~~~~~-------~gr~~l~ls~~Al~~L~~--y~w 438 (550)
T COG3604 392 -------------ELPPLRERPE-----------DIPLLAGYFLEKFRRR-------LGRAILSLSAEALELLSS--YEW 438 (550)
T ss_pred -------------CCCCcccCCc-----------cHHHHHHHHHHHHHHh-------cCCcccccCHHHHHHHHc--CCC
Confidence 2355555554 4444555443333332 254 78999999999999 677
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCC
Q 005637 589 NTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 589 ~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
.+++|+|+++|++.+..+ .....
T Consensus 439 PGNVRELen~veRavlla-~~~~~ 461 (550)
T COG3604 439 PGNVRELENVVERAVLLA-GRLTR 461 (550)
T ss_pred CCcHHHHHHHHHHHHHHh-cccCC
Confidence 888899999999999877 55444
No 27
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.2e-22 Score=210.86 Aligned_cols=217 Identities=25% Similarity=0.375 Sum_probs=163.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|-|+++.++.|.++|..+.+....... .| + -||.+||||||||||||+||||+|+..+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~----~G--------------I-~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEE----LG--------------I-DPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHH----cC--------------C-CCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 4899999999999999977765433221 00 0 135899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHH---h
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 434 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lL---E 434 (686)
|+.+.+++++ ..|+|+. ..+++++|..|+. ..|+||||||||.+..+|...+.++|.+ +|..|+++| |
T Consensus 213 FIrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~qlD 283 (406)
T COG1222 213 FIRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLNQLD 283 (406)
T ss_pred EEEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHH---HHHHHHHHHHhcc
Confidence 9999999999 5799999 7999999999875 5899999999999999988776666644 666666665 4
Q ss_pred CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcC
Q 005637 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (686)
Q Consensus 435 g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (686)
|+ +. ..|+-+|+++|-.|+
T Consensus 284 GF-----------D~--------~~nvKVI~ATNR~D~------------------------------------------ 302 (406)
T COG1222 284 GF-----------DP--------RGNVKVIMATNRPDI------------------------------------------ 302 (406)
T ss_pred CC-----------CC--------CCCeEEEEecCCccc------------------------------------------
Confidence 42 22 236889999984431
Q ss_pred chHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCC
Q 005637 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTG 591 (686)
Q Consensus 515 ~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~G 591 (686)
+.|.|+ +|||..|.|+..+.+...+|++.+.. ++.++++ -++.|++. ..+..
T Consensus 303 --------LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr---------------kM~l~~dvd~e~la~~--~~g~s 357 (406)
T COG1222 303 --------LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR---------------KMNLADDVDLELLARL--TEGFS 357 (406)
T ss_pred --------cChhhcCCCcccceeecCCCCHHHHHHHHHHHhh---------------hccCccCcCHHHHHHh--cCCCc
Confidence 335554 69999999999999999999976322 2233332 25566664 44555
Q ss_pred hhHHHHHHHHHHHHHHh
Q 005637 592 ARGLRSLLENILMDAMY 608 (686)
Q Consensus 592 AR~Lr~vIe~il~~al~ 608 (686)
.-+|+.++...=.-|+.
T Consensus 358 GAdlkaictEAGm~AiR 374 (406)
T COG1222 358 GADLKAICTEAGMFAIR 374 (406)
T ss_pred hHHHHHHHHHHhHHHHH
Confidence 56888888776555543
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=3.5e-22 Score=203.52 Aligned_cols=217 Identities=29% Similarity=0.429 Sum_probs=160.5
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
+.|+||++||+.-...+. |..- ...-..| .|.+|||+||||||||++||++|++.++
T Consensus 121 ddViGqEeAK~kcrli~~--yLen-Pe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME--YLEN-PERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHH--HhhC-hHHhccc--------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 348999999987665442 2110 0000112 2589999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
||+.+.++++. ..|+|.. ...+++++.++.. +.|||+||||+|.+...|.-...-+|++. +.|+||.-|||.
T Consensus 178 p~l~vkat~li-GehVGdg-ar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELI-GEHVGDG-ARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHH-HHHhhhH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCc
Confidence 99999999998 5699987 6889999998764 68999999999999998765545556553 999999999963
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. ....++.|+++|..+|
T Consensus 250 ~-------------------eneGVvtIaaTN~p~~-------------------------------------------- 266 (368)
T COG1223 250 K-------------------ENEGVVTIAATNRPEL-------------------------------------------- 266 (368)
T ss_pred c-------------------cCCceEEEeecCChhh--------------------------------------------
Confidence 2 1123888999885431
Q ss_pred HHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 517 dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
+.|..++||..-|.|.-.+.++..+|++..+..+ .+.++.. ++++++. +.++..|.+.
T Consensus 267 ------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~-------------Plpv~~~-~~~~~~~--t~g~SgRdik 324 (368)
T COG1223 267 ------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF-------------PLPVDAD-LRYLAAK--TKGMSGRDIK 324 (368)
T ss_pred ------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC-------------CCccccC-HHHHHHH--hCCCCchhHH
Confidence 4588899999999999999999999998644333 4444444 7777775 5666667754
Q ss_pred -HHHHHHHHHHHhc
Q 005637 597 -SLLENILMDAMYE 609 (686)
Q Consensus 597 -~vIe~il~~al~e 609 (686)
+++...+..|+.+
T Consensus 325 ekvlK~aLh~Ai~e 338 (368)
T COG1223 325 EKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHh
Confidence 4455555555544
No 29
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.2e-22 Score=223.97 Aligned_cols=246 Identities=27% Similarity=0.336 Sum_probs=178.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|-|.+++|..|.+.|..+.+...-..+.- .+.++||||||||||||++|||+|.++...
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssgl--------------------rkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGL--------------------RKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccc--------------------cccceeEEECCCCCchHHHHHHHHhhceee
Confidence 388999999999999987666543322211 112799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+++.+.++. ..|+|++ +..+++.|++|+. +.|||||+||+|.+.+.|+..++++.+..+ +.++||..|||-.
T Consensus 733 FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELL-NMYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHH-HHHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhccc
Confidence 9999999998 4699999 7889999999875 799999999999999999998888888877 9999999999521
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
++ +.+.+.+|.++|-.||
T Consensus 806 ----------~~-------~s~~VFViGATNRPDL--------------------------------------------- 823 (953)
T KOG0736|consen 806 ----------DS-------SSQDVFVIGATNRPDL--------------------------------------------- 823 (953)
T ss_pred ----------CC-------CCCceEEEecCCCccc---------------------------------------------
Confidence 10 2334666666664432
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHH-HHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChh
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQ-LVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGAR 593 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~ee-L~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR 593 (686)
+.|.|+ +|||-.+.+.+-..++ ..+|++ ++.++| .+++++ +..||++ ++.++-.-
T Consensus 824 -----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~----AlTrkF-----------kLdedVdL~eiAk~-cp~~~TGA 882 (953)
T KOG0736|consen 824 -----LDPALLRPGRFDKLVYVGPNEDAESKLRVLE----ALTRKF-----------KLDEDVDLVEIAKK-CPPNMTGA 882 (953)
T ss_pred -----cChhhcCCCccceeEEecCCccHHHHHHHHH----HHHHHc-----------cCCCCcCHHHHHhh-CCcCCchh
Confidence 123333 7999888887766544 445554 354433 333322 5677887 56666556
Q ss_pred HHHHHHHHHHHHHHhcCCCCcC-C-----CCccceEEEchhccccc
Q 005637 594 GLRSLLENILMDAMYEIPDVRA-G-----DEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 594 ~Lr~vIe~il~~al~e~~~~~~-g-----~~~i~~vlVdee~v~~~ 633 (686)
.|-.++-..+..|+.+.....+ | .++-..+.|+.+++-+.
T Consensus 883 DlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks 928 (953)
T KOG0736|consen 883 DLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKS 928 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHH
Confidence 7888888888777766543211 2 23446677777765543
No 30
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-22 Score=221.17 Aligned_cols=298 Identities=17% Similarity=0.256 Sum_probs=199.1
Q ss_pred cccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc-
Q 005637 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (686)
Q Consensus 276 d~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l- 354 (686)
...++|+..+.+.|...+. + ++....+||++|++||||..+||+|.+..
T Consensus 140 ~~~liG~S~am~~l~~~i~----k--------------------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIA----K--------------------------VAPSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHH----H--------------------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 4458999999999888875 1 12223799999999999999999997776
Q ss_pred --CCCEEEEeccccc----ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 355 --NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 355 --~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
+.||+.+||..+. ++..+|+. ...++.......+.++.+.+|+||||||..++.. +|..
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~k 254 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVK 254 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHH
Confidence 5699999999885 35566665 3334444444556788999999999999999998 9999
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
||++|+.+.+. +-+..+.+.+| +.+|+++| .+|++.+++++|+.+++|+.++...
T Consensus 255 LLRvLqe~~~~-------rvG~~~~i~vd---vRiIaaT~-~dL~~~v~~G~FReDLyyRLnV~~i-------------- 309 (464)
T COG2204 255 LLRVLQEREFE-------RVGGNKPIKVD---VRIIAATN-RDLEEEVAAGRFREDLYYRLNVVPL-------------- 309 (464)
T ss_pred HHHHHHcCeeE-------ecCCCccccee---eEEEeecC-cCHHHHHHcCCcHHHHHhhhcccee--------------
Confidence 99999833332 12333445555 67777766 7899999999888888876665432
Q ss_pred HHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCC
Q 005637 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISK 588 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~ 588 (686)
..|+|+.|- +|+.-++.+++.++.+++. .....|+++|++.|.. |+|
T Consensus 310 --------------~iPpLRER~-----------EDIp~L~~hfl~~~~~~~~------~~~~~~s~~a~~~L~~--y~W 356 (464)
T COG2204 310 --------------RLPPLRERK-----------EDIPLLAEHFLKRFAAELG------RPPKGFSPEALAALLA--YDW 356 (464)
T ss_pred --------------cCCcccccc-----------hhHHHHHHHHHHHHHHHcC------CCCCCCCHHHHHHHHh--CCC
Confidence 124444444 5667777776555544431 1256799999999998 678
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCCcceEEcCCChHHHHHHHHhhhh-hhhhhhcc
Q 005637 589 NTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKD-LELQTNVA 667 (686)
Q Consensus 589 ~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~ 667 (686)
++++|+|+|++++.+...-.+..+.. .+...+... .........+...... ..+...+++.+++. .+++....
T Consensus 357 PGNVREL~N~ver~~il~~~~~i~~~----~l~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~~~Er~~I~~aL~~~~ 430 (464)
T COG2204 357 PGNVRELENVVERAVILSEGPEIEVE----DLPLEILAP-AAEALAGPAGEAALPG-LPLGEALAEVERQLILQALERTG 430 (464)
T ss_pred ChHHHHHHHHHHHHHhcCCccccchh----hcccccccc-cccccccccccccccc-ccHHHHHHHHHHHHHHHHHHHhC
Confidence 88889999999998774432222111 001000000 0000000000000011 45788888888885 44567778
Q ss_pred CCCCCCCcccCcccc
Q 005637 668 GADGEPEMETEIPSI 682 (686)
Q Consensus 668 ~~~~~~~~~~~~~~~ 682 (686)
|...+.+..++|+.+
T Consensus 431 g~~~~aA~~LGi~R~ 445 (464)
T COG2204 431 GNKSEAAERLGISRK 445 (464)
T ss_pred CCHHHHHHHHCCCHH
Confidence 888888888888743
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=2.3e-21 Score=196.38 Aligned_cols=201 Identities=26% Similarity=0.412 Sum_probs=128.2
Q ss_pred hcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 275 Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
|++ ++||++++..+..++....+| . -+..|+|||||||+|||+||+.||+++
T Consensus 23 L~e-fiGQ~~l~~~l~i~i~aa~~r-------~--------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 23 LDE-FIGQEHLKGNLKILIRAAKKR-------G--------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCC-S-S-HHHHHHHHHHHHHHHCT-------T--------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHH-ccCcHHHHhhhHHHHHHHHhc-------C--------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 344 699999999988777522111 0 012699999999999999999999999
Q ss_pred CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+.+|...++..+... .+.. .++... ..+.||||||||++.+. +|+.|+.+||
T Consensus 75 ~~~~~~~sg~~i~k~-------~dl~-~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA-------GDLA-AILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--SC-------HHHH-HHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhhH-------HHHH-HHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 999998888655321 2222 222211 24579999999999998 9999999999
Q ss_pred Cceeec-CCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhc
Q 005637 435 GTVVNV-PEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (686)
Q Consensus 435 g~~v~v-p~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (686)
+..+++ -++| ...+.+.++...+.+|.+++-.+
T Consensus 127 d~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g------------------------------------------ 160 (233)
T PF05496_consen 127 DGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG------------------------------------------ 160 (233)
T ss_dssp CSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC------------------------------------------
T ss_pred cCeEEEEeccc----cccceeeccCCCceEeeeecccc------------------------------------------
Confidence 666543 2444 34566788888888888776221
Q ss_pred CchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh
Q 005637 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (686)
Q Consensus 514 ~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR 593 (686)
.++++|++||..+..+..|+.+|+.+|+++... -..+.+++++...|+.++ .+..|
T Consensus 161 --------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~-------------~l~i~i~~~~~~~Ia~rs---rGtPR 216 (233)
T PF05496_consen 161 --------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR-------------ILNIEIDEDAAEEIARRS---RGTPR 216 (233)
T ss_dssp --------CTSHCCCTTSSEEEE----THHHHHHHHHHCCH-------------CTT-EE-HHHHHHHHHCT---TTSHH
T ss_pred --------ccchhHHhhcceecchhcCCHHHHHHHHHHHHH-------------HhCCCcCHHHHHHHHHhc---CCChH
Confidence 256889999999999999999999999986322 237889999999999963 22245
Q ss_pred HHHHHHHH
Q 005637 594 GLRSLLEN 601 (686)
Q Consensus 594 ~Lr~vIe~ 601 (686)
-..+++++
T Consensus 217 iAnrll~r 224 (233)
T PF05496_consen 217 IANRLLRR 224 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555544
No 32
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=207.26 Aligned_cols=220 Identities=21% Similarity=0.323 Sum_probs=160.1
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~--r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.|.|.++||+.|.++|..+.+ ..+++.+++| .++|++||||||||+||||+|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 388999999999999986554 4555666555 7899999999999999999999999
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
..|+.|+.+.++ +.|.|++ +++++-+|..++.. .|++|||||||.|+..|++. +.++..+++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARfy----APStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhc
Confidence 999999999998 8999999 89999999998874 78999999999999987653 5566677899999999996
Q ss_pred ceeecCCCCCccCCCCCceEeeccc-eEEEccCCcc-cHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKD-ILFICGGAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~Vdtsn-iIfI~tgn~~-~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (686)
..- ..+.+. +.+++++|+. ||+++++
T Consensus 343 ~~~----------------t~e~~k~VmVLAATN~PWdiDEAlr------------------------------------ 370 (491)
T KOG0738|consen 343 VQG----------------TLENSKVVMVLAATNFPWDIDEALR------------------------------------ 370 (491)
T ss_pred ccc----------------ccccceeEEEEeccCCCcchHHHHH------------------------------------
Confidence 321 112233 4444556655 4555444
Q ss_pred CchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh
Q 005637 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (686)
Q Consensus 514 ~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR 593 (686)
.||.-.|.++-.+.+....+++..+.. ...-++--++.|++. ..+|..-
T Consensus 371 ---------------RRlEKRIyIPLP~~~~R~~Li~~~l~~--------------~~~~~~~~~~~lae~--~eGySGa 419 (491)
T KOG0738|consen 371 ---------------RRLEKRIYIPLPDAEARSALIKILLRS--------------VELDDPVNLEDLAER--SEGYSGA 419 (491)
T ss_pred ---------------HHHhhheeeeCCCHHHHHHHHHHhhcc--------------ccCCCCccHHHHHHH--hcCCChH
Confidence 444334444445555555555431111 112233445667775 3455557
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005637 594 GLRSLLENILMDAMYEI 610 (686)
Q Consensus 594 ~Lr~vIe~il~~al~e~ 610 (686)
.+++++..+-..+|.+.
T Consensus 420 DI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRK 436 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999998888888744
No 33
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.3e-21 Score=207.54 Aligned_cols=233 Identities=22% Similarity=0.294 Sum_probs=166.4
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
.+|.+....-.+.|-|.|+||+.|.+.|. ..+...... + .+-. -|.+|||+||||||||+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kft----r---LGGK------------LPKGVLLvGPPGTGKTl 352 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVE-FLKDPTKFT----R---LGGK------------LPKGVLLVGPPGTGKTL 352 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHH-HhcCcHHhh----h---ccCc------------CCCceEEeCCCCCchhH
Confidence 34444444445668999999999999885 111110000 0 0111 13799999999999999
Q ss_pred HHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHH
Q 005637 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (686)
Q Consensus 346 LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~v 425 (686)
||||+|.+.++||+....+++.+ -|+|.. .+.++++|..+.. ..||||||||||.+..+|...... .-...
T Consensus 353 LARAvAGEA~VPFF~~sGSEFdE-m~VGvG-ArRVRdLF~aAk~----~APcIIFIDEiDavG~kR~~~~~~---y~kqT 423 (752)
T KOG0734|consen 353 LARAVAGEAGVPFFYASGSEFDE-MFVGVG-ARRVRDLFAAAKA----RAPCIIFIDEIDAVGGKRNPSDQH---YAKQT 423 (752)
T ss_pred HHHHhhcccCCCeEeccccchhh-hhhccc-HHHHHHHHHHHHh----cCCeEEEEechhhhcccCCccHHH---HHHHH
Confidence 99999999999999999999985 599998 6889999998764 589999999999998887643211 34458
Q ss_pred HHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005637 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (686)
Q Consensus 426 q~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~-Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~ 504 (686)
+++||..|||..-+ ..||+|.++|+.+ ||+++
T Consensus 424 lNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL---------------------------- 456 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKAL---------------------------- 456 (752)
T ss_pred HHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHh----------------------------
Confidence 99999999975421 2389999999864 33332
Q ss_pred hHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
.+| +|||..|..+.++..-..+|+..++.. +..++++=-.+..+
T Consensus 457 ------------------~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~k---------------i~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 457 ------------------TRP---GRFDRHVTVPLPDVRGRTEILKLYLSK---------------IPLDEDVDPKIIAR 500 (752)
T ss_pred ------------------cCC---CccceeEecCCCCcccHHHHHHHHHhc---------------CCcccCCCHhHhcc
Confidence 123 799999999999999999999764332 22332222223333
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 585 AISKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 585 a~~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
-..++..-+|.|+|......|..+..
T Consensus 501 -GT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 501 -GTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 35666667999999988777766543
No 34
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-20 Score=214.02 Aligned_cols=221 Identities=24% Similarity=0.288 Sum_probs=160.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|+|+||+.|.+.|. ..+...+.... + +..|+++||+||||||||+||||+|.+.++|
T Consensus 312 DVAG~deAK~El~E~V~-fLKNP~~Y~~l-------G------------AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK-FLKNPEQYQEL-------G------------AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred cccCcHHHHHHHHHHHH-HhcCHHHHHHc-------C------------CcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 48999999999999985 22221111110 0 1234899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc-ccccCCCCchHHHHHHHHHHHhCc
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~-~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
|+.++++++++ .++|.. .+.++++|..++. ..|+||||||||.+...|. .+.++.+.++|..+++||..|||.
T Consensus 372 F~svSGSEFvE-~~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 372 FFSVSGSEFVE-MFVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred eeeechHHHHH-Hhcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 99999999995 477777 6889999998875 5899999999999999984 334567778889999999999975
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
.. .++++|++++|-.|+
T Consensus 446 ~~-------------------~~~vi~~a~tnr~d~-------------------------------------------- 462 (774)
T KOG0731|consen 446 ET-------------------SKGVIVLAATNRPDI-------------------------------------------- 462 (774)
T ss_pred cC-------------------CCcEEEEeccCCccc--------------------------------------------
Confidence 32 246899998884431
Q ss_pred HHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhH
Q 005637 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (686)
Q Consensus 517 dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~ 594 (686)
+.|+|+ +|||..|..+..+.....+|++.++... .+..++.-+..|+.. +.++-.-.
T Consensus 463 ------ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~-------------~~~~e~~dl~~~a~~--t~gf~gad 521 (774)
T KOG0731|consen 463 ------LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK-------------KLDDEDVDLSKLASL--TPGFSGAD 521 (774)
T ss_pred ------cCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc-------------CCCcchhhHHHHHhc--CCCCcHHH
Confidence 223333 7999999999999999999998643322 333333334445553 34444456
Q ss_pred HHHHHHHHHHHHHh
Q 005637 595 LRSLLENILMDAMY 608 (686)
Q Consensus 595 Lr~vIe~il~~al~ 608 (686)
|.+++...-..+..
T Consensus 522 l~n~~neaa~~a~r 535 (774)
T KOG0731|consen 522 LANLCNEAALLAAR 535 (774)
T ss_pred HHhhhhHHHHHHHH
Confidence 66666655444443
No 35
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-20 Score=208.26 Aligned_cols=221 Identities=24% Similarity=0.338 Sum_probs=167.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|-|+++++.+|..+|..+.++...... .|.. +|.+||||||||||||+||||+|++.+..|
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~----lGi~---------------~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKA----LGID---------------APSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHH----hCCC---------------CCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 789999999999999988776544332 1111 248999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.+...++. ..|+|++ +..++.+|.+++. ..|||||+||||.|.+.|+..+ ...+.++.++||..|||-.
T Consensus 574 isVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~- 643 (802)
T KOG0733|consen 574 ISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE- 643 (802)
T ss_pred EeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc-
Confidence 999999998 6799999 8999999999875 6899999999999999987643 4445679999999999632
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
+-+++.+|.++|-.|+
T Consensus 644 ------------------~R~gV~viaATNRPDi---------------------------------------------- 659 (802)
T KOG0733|consen 644 ------------------ERRGVYVIAATNRPDI---------------------------------------------- 659 (802)
T ss_pred ------------------cccceEEEeecCCCcc----------------------------------------------
Confidence 2345778888884431
Q ss_pred HhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH-HHHHHHHHhcCCCCCChhHH
Q 005637 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 519 ~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~-eAl~~La~~a~~~~~GAR~L 595 (686)
+.|.++ +|||.++.....+.+|..+||+. +.+ +.+.-+++ --++.|+......+|..-.|
T Consensus 660 ----IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~----~tk---------n~k~pl~~dVdl~eia~~~~c~gftGADL 722 (802)
T KOG0733|consen 660 ----IDPAILRPGRLDKLLYVGLPNAEERVAILKT----ITK---------NTKPPLSSDVDLDEIARNTKCEGFTGADL 722 (802)
T ss_pred ----cchhhcCCCccCceeeecCCCHHHHHHHHHH----Hhc---------cCCCCCCcccCHHHHhhcccccCCchhhH
Confidence 113332 79999999999999999999975 211 12333332 23566777644446655688
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
..+|+..-..++.+
T Consensus 723 aaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 723 AALVREASILALRE 736 (802)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776655544
No 36
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=187.46 Aligned_cols=145 Identities=25% Similarity=0.382 Sum_probs=116.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++.||++|+++|..+.+-.+-...+| .|.+.+||+|||||||++||+++|.+.+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR--------------------~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR--------------------KPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCC--------------------CcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 478999999999999987766433333222 123899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|++++.++++ +.|.|++ ++++..+|..++. ..|+||||||||.++..|+. +.....+++...||-.|.|.
T Consensus 194 FFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGV- 263 (439)
T KOG0739|consen 194 FFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGV- 263 (439)
T ss_pred eEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhcc-
Confidence 9999999999 8899999 8999999998875 58999999999999887553 33344556889999999852
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
..|...++++.++|.
T Consensus 264 -----------------G~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 264 -----------------GNDNDGVLVLGATNI 278 (439)
T ss_pred -----------------ccCCCceEEEecCCC
Confidence 224455777777664
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=7.7e-19 Score=181.54 Aligned_cols=190 Identities=28% Similarity=0.461 Sum_probs=146.5
Q ss_pred HhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 273 ~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
+.|+++ +||+++|+.+...+.....| .. ..-|+||+||||.|||+||..+|+
T Consensus 23 ~~l~ef-iGQ~~vk~~L~ifI~AAk~r-------~e--------------------~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 23 KTLDEF-IGQEKVKEQLQIFIKAAKKR-------GE--------------------ALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred ccHHHh-cChHHHHHHHHHHHHHHHhc-------CC--------------------CcCeEEeeCCCCCcHHHHHHHHHH
Confidence 344555 99999999999988633222 00 127999999999999999999999
Q ss_pred hcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 353 YVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 353 ~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
++++.+-..++..+..+| +...+++.+ ..+-||||||||++.+. +-..|..+
T Consensus 75 Emgvn~k~tsGp~leK~g----DlaaiLt~L----------e~~DVLFIDEIHrl~~~--------------vEE~LYpa 126 (332)
T COG2255 75 ELGVNLKITSGPALEKPG----DLAAILTNL----------EEGDVLFIDEIHRLSPA--------------VEEVLYPA 126 (332)
T ss_pred HhcCCeEecccccccChh----hHHHHHhcC----------CcCCeEEEehhhhcChh--------------HHHHhhhh
Confidence 999999888887765332 222222222 23469999999999998 99999999
Q ss_pred HhCceeecC-CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 433 LEGTVVNVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 433 LEg~~v~vp-~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
||+..+++- ++| +..+.+.+|...+.+|.+++-.+
T Consensus 127 MEDf~lDI~IG~g----p~Arsv~ldLppFTLIGATTr~G---------------------------------------- 162 (332)
T COG2255 127 MEDFRLDIIIGKG----PAARSIRLDLPPFTLIGATTRAG---------------------------------------- 162 (332)
T ss_pred hhheeEEEEEccC----CccceEeccCCCeeEeeeccccc----------------------------------------
Confidence 998888764 444 45667888999988887766221
Q ss_pred hcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhc
Q 005637 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a 585 (686)
.++.+|+.||..+..+.-|+.+|+.+|+.+....+ .+.+++++...|++++
T Consensus 163 ----------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-------------~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 ----------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-------------GIEIDEEAALEIARRS 213 (332)
T ss_pred ----------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-------------CCCCChHHHHHHHHhc
Confidence 14567999999999999999999999998744333 7889999999999974
No 38
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.7e-19 Score=194.41 Aligned_cols=221 Identities=25% Similarity=0.311 Sum_probs=156.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
+-|.+.....|.+.+. |.++...... . + ..|++++||+||||||||.||++||.++++||
T Consensus 192 iGG~d~~~~el~~li~-~i~~Pe~~~~-------l-----------G-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 192 IGGLDKTLAELCELII-HIKHPEVFSS-------L-----------G-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred ccChHHHHHHHHHHHH-HhcCchhHhh-------c-----------C-CCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 7999999999999885 3332111110 0 0 13469999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.+++.++. +|+.|++ +..++++|..+.. ..|||+||||||.+.++|.. .+++ ..+++..+||..||+-..
T Consensus 252 ~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~--aqre-MErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 252 LSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREE--AQRE-MERRIVAQLLTSMDELSN 322 (802)
T ss_pred Eeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhh--HHHH-HHHHHHHHHHHhhhcccc
Confidence 999999999 8999999 7889999999876 58999999999999999875 2333 445599999999994221
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
. .-+...+++|.++|-.|
T Consensus 323 ~---------------~~~g~~VlVIgATnRPD----------------------------------------------- 340 (802)
T KOG0733|consen 323 E---------------KTKGDPVLVIGATNRPD----------------------------------------------- 340 (802)
T ss_pred c---------------ccCCCCeEEEecCCCCc-----------------------------------------------
Confidence 0 01223488888887432
Q ss_pred HhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 519 ~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.|+ +|||.-|.+.-.++....+||+..+..+ .+...|+ ++.||+. +++|=.-.|.
T Consensus 341 ---slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l-----------rl~g~~d---~~qlA~l--TPGfVGADL~ 401 (802)
T KOG0733|consen 341 ---SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL-----------RLSGDFD---FKQLAKL--TPGFVGADLM 401 (802)
T ss_pred ---ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC-----------CCCCCcC---HHHHHhc--CCCccchhHH
Confidence 0224443 7999999999999999999998643322 1111222 4566764 4444334566
Q ss_pred HHHHHHHHHHHhc
Q 005637 597 SLLENILMDAMYE 609 (686)
Q Consensus 597 ~vIe~il~~al~e 609 (686)
.++...-.-++-+
T Consensus 402 AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 402 ALCREAAFVAIKR 414 (802)
T ss_pred HHHHHHHHHHHHH
Confidence 6655544433333
No 39
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.79 E-value=1.3e-18 Score=187.28 Aligned_cols=294 Identities=16% Similarity=0.203 Sum_probs=180.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|+..+.+.+.+.+. +. .....+|||+|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~----~~--------------------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVS----RL--------------------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHH----HH--------------------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 4788888888877775 11 0113789999999999999999997665 4
Q ss_pred CCEEEEeccccccc----CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005637 356 VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (686)
Q Consensus 356 ~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (686)
.||+.+||..+.+. ..+|... ..+........+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 51 ~pfv~vnc~~~~~~~l~~~lfG~~~-g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSENLLDSELFGHEA-GAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChHHHHHHHhcccc-ccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 79999999877421 1112110 000000111234577788999999999999988 9999999
Q ss_pred HHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 432 lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
+|+...+. ..+... .-..++.+|++++ .++++.+.++
T Consensus 116 ~l~~~~~~-------~~g~~~---~~~~~~RiI~at~-~~l~~~~~~g-------------------------------- 152 (329)
T TIGR02974 116 VIEYGEFE-------RVGGSQ---TLQVDVRLVCATN-ADLPALAAEG-------------------------------- 152 (329)
T ss_pred HHHcCcEE-------ecCCCc---eeccceEEEEech-hhHHHHhhcC--------------------------------
Confidence 99833221 011111 1234577888776 3444444332
Q ss_pred hcCchHHHhcCCChhhhcccC-eEEEccCcC--hHHHHHHHhhhHHHHHHHHHHHHhhcCCc--cccCHHHHHHHHHhcC
Q 005637 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs--~eeL~~IL~~~l~~L~kq~~~~~~~~gv~--l~~s~eAl~~La~~a~ 586 (686)
.|.++|..|+. ..|.++||. .+|+..++..++.++.+++ +.. ..++++|++.|.. |
T Consensus 153 ----------~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~ls~~a~~~L~~--y 213 (329)
T TIGR02974 153 ----------RFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-------GLPLFPGFTPQAREQLLE--Y 213 (329)
T ss_pred ----------chHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCcCHHHHHHHHh--C
Confidence 36688888984 579999999 5889888887666554443 323 5799999999999 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEch----hccccccC----CC-cceE----EcCCChHHHHHH
Q 005637 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDE----EAVGSEDR----GC-GAKI----LYGKGALDRYLA 653 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVde----e~v~~~~~----g~-~~~i----~~~~~~l~~~~~ 653 (686)
+|..+.|+|+++|++++..+-.+......- .+.. +... ..+....+ .. .... ......++.++.
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRHGLEEAPIDEI--IIDP-FASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQ 290 (329)
T ss_pred CCCchHHHHHHHHHHHHHhCCCCccchhhc--cccc-cccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 777778999999999887542111100000 0000 0000 00000000 00 0000 000125667777
Q ss_pred HHhhhhhh-hhhhccCCCCCCCcccCcccc
Q 005637 654 QHKRKDLE-LQTNVAGADGEPEMETEIPSI 682 (686)
Q Consensus 654 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 682 (686)
+.|++.++ .+....|...+.+..++||..
T Consensus 291 ~~E~~~I~~aL~~~~gn~~~aA~~LGisr~ 320 (329)
T TIGR02974 291 DYEIELLQQALAEAQFNQRKAAELLGLTYH 320 (329)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHH
Confidence 77776654 446667888888888888753
No 40
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=3.7e-18 Score=192.06 Aligned_cols=217 Identities=21% Similarity=0.306 Sum_probs=155.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++.+|+.+.+.... +.. ..+ ..+. .++.++||+||||||||++|+++|+.++.|
T Consensus 229 dvgGl~~lK~~l~~~~~~-~~~----~~~--~~gl---------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTS-FSK----QAS--NYGL---------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHH-hhH----HHH--hcCC---------------CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 389999999988865431 110 000 0010 124799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++.+. .+|+|++ +..++.+|..+. ...+|||||||||++...+...+. .....++...|+..|++
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~-- 356 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE-- 356 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--
Confidence 9999999887 6899998 678888887654 357999999999998765332111 11234577888888872
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 357 -------------------~~~~V~vIaTTN~~~---------------------------------------------- 371 (489)
T CHL00195 357 -------------------KKSPVFVVATANNID---------------------------------------------- 371 (489)
T ss_pred -------------------CCCceEEEEecCChh----------------------------------------------
Confidence 123477888887432
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+++ +|||.++.++.++.++..+|++..+... + ....++.-++.|++. +.++...+|
T Consensus 372 ----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----------~-~~~~~~~dl~~La~~--T~GfSGAdI 433 (489)
T CHL00195 372 ----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----------R-PKSWKKYDIKKLSKL--SNKFSGAEI 433 (489)
T ss_pred ----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----------C-CCcccccCHHHHHhh--cCCCCHHHH
Confidence 1446676 4999999999999999999998744332 1 011234457788875 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
++++...+..+..+
T Consensus 434 ~~lv~eA~~~A~~~ 447 (489)
T CHL00195 434 EQSIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHHHHc
Confidence 99998888777654
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.7e-18 Score=191.25 Aligned_cols=220 Identities=25% Similarity=0.320 Sum_probs=166.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
+.|.+.+|+.+.+++...+++.....+ . + ..++.++||+||||||||+||+++|+.++.+|
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~----~---~------------~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK----L---G------------LRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh----c---C------------CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 678999999999999877765443221 0 0 01236999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++.+++. +.|+|+. ++.++.+|..+.. ..++||||||+|++...|+.. .+...+.+.+.||..|+|-.
T Consensus 305 i~v~~~~l~-sk~vGes-ek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~~e- 374 (494)
T COG0464 305 ISVKGSELL-SKWVGES-EKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIE- 374 (494)
T ss_pred EEeeCHHHh-ccccchH-HHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcCCC-
Confidence 999999888 7899998 8999999998763 589999999999999986643 22233569999999998421
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
..+++++|.++|..+
T Consensus 375 ------------------~~~~v~vi~aTN~p~----------------------------------------------- 389 (494)
T COG0464 375 ------------------KAEGVLVIAATNRPD----------------------------------------------- 389 (494)
T ss_pred ------------------ccCceEEEecCCCcc-----------------------------------------------
Confidence 234577888888432
Q ss_pred HhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcc-ccCHHHHHHHHHhcCCCCCChhHH
Q 005637 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 519 ~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l-~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+++. |||.++.+++++.++..+|++.++... .. ..++-.++.+++. ..++-...+
T Consensus 390 ---~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-------------~~~~~~~~~~~~l~~~--t~~~sgadi 451 (494)
T COG0464 390 ---DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-------------KPPLAEDVDLEELAEI--TEGYSGADI 451 (494)
T ss_pred ---ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-------------CCcchhhhhHHHHHHH--hcCCCHHHH
Confidence 13355665 999999999999999999998743321 11 1234455666663 444666889
Q ss_pred HHHHHHHHHHHHhcC
Q 005637 596 RSLLENILMDAMYEI 610 (686)
Q Consensus 596 r~vIe~il~~al~e~ 610 (686)
..+++.....++.+.
T Consensus 452 ~~i~~ea~~~~~~~~ 466 (494)
T COG0464 452 AALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888887665
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.5e-18 Score=184.87 Aligned_cols=170 Identities=26% Similarity=0.404 Sum_probs=129.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.+++||||||||||++|+.||+..+.+|..+++..-. -+.+++.++.+.......++.||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6899999999999999999999999999999986532 3456777777655544567899999999999998
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
.|+.||..||. | .+++|.+++-. |
T Consensus 120 --------------QQD~lLp~vE~--------G---------------~iilIGATTEN-------------------P 143 (436)
T COG2256 120 --------------QQDALLPHVEN--------G---------------TIILIGATTEN-------------------P 143 (436)
T ss_pred --------------hhhhhhhhhcC--------C---------------eEEEEeccCCC-------------------C
Confidence 99999999992 2 15566555410 0
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
.+.+.|.+++|.- ++.|.+|+.+++.+++++.+....+. ..+..
T Consensus 144 -----------------------------sF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rg------l~~~~ 187 (436)
T COG2256 144 -----------------------------SFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERG------LGGQI 187 (436)
T ss_pred -----------------------------CeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcC------CCccc
Confidence 0124588889987 79999999999999998733222111 12235
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.++++++++|+..+ ++.+|.+-|.+|-+..
T Consensus 188 ~~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 188 IVLDEEALDYLVRLS---NGDARRALNLLELAAL 218 (436)
T ss_pred ccCCHHHHHHHHHhc---CchHHHHHHHHHHHHH
Confidence 669999999999973 6778999999986654
No 43
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.77 E-value=4.2e-18 Score=193.25 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=182.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|+..+.+.+.+.+.. +.....+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~~------------------------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEV------------------------------VAASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHHH------------------------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 478888888887777751 11123799999999999999999998775
Q ss_pred CCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.||+.+||..+.+ ...+|... ..+........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~~-g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHVK-GAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCccc-cccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 57999999998752 11222110 000001111234567788999999999999988 999999
Q ss_pred HHHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 431 KMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 431 ~lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
++++...+ .+ +..+.+. .++.+|++++ .++++.+.++
T Consensus 303 ~~l~~~~~~~~--------g~~~~~~---~~~RiI~~t~-~~l~~~~~~~------------------------------ 340 (509)
T PRK05022 303 RVLQYGEIQRV--------GSDRSLR---VDVRVIAATN-RDLREEVRAG------------------------------ 340 (509)
T ss_pred HHHhcCCEeeC--------CCCccee---cceEEEEecC-CCHHHHHHcC------------------------------
Confidence 99983322 21 1111122 3467777776 3455554433
Q ss_pred HhhcCchHHHhcCCChhhhcccCe-EEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcC
Q 005637 510 METVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~ 586 (686)
.|.++|..|+.. .|.++||.+ +|+..++..++.++.+++. ...+.+++++++.|.. |
T Consensus 341 ------------~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~------~~~~~~s~~a~~~L~~--y 400 (509)
T PRK05022 341 ------------RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLG------LRSLRLSPAAQAALLA--Y 400 (509)
T ss_pred ------------CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcC------CCCCCCCHHHHHHHHh--C
Confidence 366777888854 488899886 6788888775555433321 1356899999999999 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc----CCCcceEE---cCCChHHHHHHHHhhh-
Q 005637 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED----RGCGAKIL---YGKGALDRYLAQHKRK- 658 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~----~g~~~~i~---~~~~~l~~~~~~~~~~- 658 (686)
+|..|.|+|+++|++++..+.....+. ...|+.+.+.... ........ .....+...+++.|++
T Consensus 401 ~WPGNvrEL~~~i~ra~~~~~~~~~~~--------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~ 472 (509)
T PRK05022 401 DWPGNVRELEHVISRAALLARARGAGR--------IVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQL 472 (509)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCccCc--------cceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHH
Confidence 777777999999999887654321110 1122222221100 00000000 1122455666677666
Q ss_pred hhhhhhhccCCCCCCCcccCcccc
Q 005637 659 DLELQTNVAGADGEPEMETEIPSI 682 (686)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~ 682 (686)
+.+.+....|...+++..++|+..
T Consensus 473 I~~aL~~~~gn~~~aA~~LGisr~ 496 (509)
T PRK05022 473 IRQALAQHQGNWAAAARALELDRA 496 (509)
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHH
Confidence 455567777888888888988753
No 44
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=1.3e-17 Score=188.57 Aligned_cols=218 Identities=24% Similarity=0.295 Sum_probs=149.0
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+|++++|+.+.+.+.. ++....... . +. .++.++||+||||||||++|+++|+.++.+|
T Consensus 57 i~g~~~~k~~l~~~~~~-l~~~~~~~~----~---g~------------~~~~giLL~GppGtGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDF-LKNPSKFTK----L---GA------------KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred hCCHHHHHHHHHHHHHH-HHCHHHHHh----c---CC------------CCCCcEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 79999999999987752 221111000 0 00 1237899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++++++. ..|.|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++.||..||+..
T Consensus 117 ~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~- 189 (495)
T TIGR01241 117 FSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG- 189 (495)
T ss_pred eeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-
Confidence 999998876 4567766 5677888876543 46899999999999987654322334445568888999988421
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
...++++|+|+|..+
T Consensus 190 ------------------~~~~v~vI~aTn~~~----------------------------------------------- 204 (495)
T TIGR01241 190 ------------------TNTGVIVIAATNRPD----------------------------------------------- 204 (495)
T ss_pred ------------------CCCCeEEEEecCChh-----------------------------------------------
Confidence 123478888887432
Q ss_pred HhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 519 ~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.++ +|||..+.++.++.++..+|++..+... .+. ++..+..+++. ..++..+.|+
T Consensus 205 ---~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-------------~~~-~~~~l~~la~~--t~G~sgadl~ 265 (495)
T TIGR01241 205 ---VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-------------KLA-PDVDLKAVARR--TPGFSGADLA 265 (495)
T ss_pred ---hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-------------CCC-cchhHHHHHHh--CCCCCHHHHH
Confidence 1235555 4999999999999999999987633211 111 22334566654 3445556777
Q ss_pred HHHHHHHHHHH
Q 005637 597 SLLENILMDAM 607 (686)
Q Consensus 597 ~vIe~il~~al 607 (686)
++++.....+.
T Consensus 266 ~l~~eA~~~a~ 276 (495)
T TIGR01241 266 NLLNEAALLAA 276 (495)
T ss_pred HHHHHHHHHHH
Confidence 77776654443
No 45
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=6.9e-18 Score=199.19 Aligned_cols=221 Identities=22% Similarity=0.304 Sum_probs=162.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++.+|+.|.+.+..+++......+. + ..++.++||+||||||||++|+++|+.++.+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~----g---------------~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKM----G---------------IRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhc----C---------------CCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 37999999999999997554432211110 0 0124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..++||||||||.+.+.++... .....+++.+.||..|+|..
T Consensus 515 fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 515 FIAVRGPEIL-SKWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred EEEEehHHHh-hcccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhccc
Confidence 9999999987 6799998 6788999987653 5789999999999988764321 12223458899999998521
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
..+++++|+|+|..+
T Consensus 587 -------------------~~~~v~vI~aTn~~~---------------------------------------------- 601 (733)
T TIGR01243 587 -------------------ELSNVVVIAATNRPD---------------------------------------------- 601 (733)
T ss_pred -------------------CCCCEEEEEeCCChh----------------------------------------------
Confidence 234688999988432
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC-HHHHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s-~eAl~~La~~a~~~~~GAR~ 594 (686)
.+.|.++ +|||.++.++.++.++..+|++.... .+.++ +..++.|++. ..++....
T Consensus 602 ----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~---------------~~~~~~~~~l~~la~~--t~g~sgad 660 (733)
T TIGR01243 602 ----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR---------------SMPLAEDVDLEELAEM--TEGYTGAD 660 (733)
T ss_pred ----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc---------------CCCCCccCCHHHHHHH--cCCCCHHH
Confidence 1335566 59999999999999999999864211 12222 2236777874 45677789
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005637 595 LRSLLENILMDAMYEIP 611 (686)
Q Consensus 595 Lr~vIe~il~~al~e~~ 611 (686)
|.++++.....++.+..
T Consensus 661 i~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 661 IEAVCREAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988888877643
No 46
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.7e-18 Score=174.36 Aligned_cols=212 Identities=24% Similarity=0.392 Sum_probs=156.2
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
+.|-|.|+.++.+++.+..+.+...-... .+..+ |.++||+||||||||+||+++|.....
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~a-------LGIaQ------------PKGvlLygppgtGktLlaraVahht~c 207 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEA-------LGIAQ------------PKGVLLYGPPGTGKTLLARAVAHHTDC 207 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHh-------cCCCC------------CcceEEecCCCCchhHHHHHHHhhcce
Confidence 45889999999999999866654322111 01112 379999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh--
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 434 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-- 434 (686)
.|++++.++++ ..|+|+. ...++++|-.++. ..|+|||.||||.+...|..++.|+|.. +|..+|++|.
T Consensus 208 ~firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnql 278 (404)
T KOG0728|consen 208 TFIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQL 278 (404)
T ss_pred EEEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhc
Confidence 99999999999 5799998 7899999988764 6899999999999999988877777755 7777766664
Q ss_pred -CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhc
Q 005637 435 -GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (686)
Q Consensus 435 -g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (686)
|. -.++|+-+|+++|-.|+
T Consensus 279 dgf-------------------eatknikvimatnridi----------------------------------------- 298 (404)
T KOG0728|consen 279 DGF-------------------EATKNIKVIMATNRIDI----------------------------------------- 298 (404)
T ss_pred ccc-------------------ccccceEEEEecccccc-----------------------------------------
Confidence 32 24678999999985431
Q ss_pred CchHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCC
Q 005637 514 ESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (686)
Q Consensus 514 ~~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~G 591 (686)
+.|.|+ +|+|.-|.|++.+++...+|++.+-..+ --.+|+. ++.++++ ...-.|
T Consensus 299 ---------ld~allrpgridrkiefp~p~e~ar~~ilkihsrkm-------nl~rgi~-------l~kiaek-m~gasg 354 (404)
T KOG0728|consen 299 ---------LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-------NLTRGIN-------LRKIAEK-MPGASG 354 (404)
T ss_pred ---------ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-------chhcccC-------HHHHHHh-CCCCcc
Confidence 223333 6999999999999999999997532211 1112322 4567776 555555
Q ss_pred hhHHHHHHHH
Q 005637 592 ARGLRSLLEN 601 (686)
Q Consensus 592 AR~Lr~vIe~ 601 (686)
| +++.++..
T Consensus 355 a-evk~vcte 363 (404)
T KOG0728|consen 355 A-EVKGVCTE 363 (404)
T ss_pred c-hhhhhhhh
Confidence 3 56655544
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=1.7e-17 Score=182.84 Aligned_cols=222 Identities=20% Similarity=0.277 Sum_probs=153.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++.+|+.|.+++..++.+...... .+ + .++.++||+||||||||++|+++|+.++.+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~----~G--------------l-~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQ----IG--------------I-DPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHh----cC--------------C-CCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3899999999999999866553221111 00 0 124899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.+.++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+...+.+.+...+.+...||..|+|..
T Consensus 207 fi~i~~s~l~-~k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 207 FIRVVGSEFV-QKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred EEEEehHHHH-HHhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 9999998886 5688887 5678888876543 57899999999999877644333333333334455555555311
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+
T Consensus 281 -------------------~~~~v~VI~aTN~~d---------------------------------------------- 295 (398)
T PTZ00454 281 -------------------QTTNVKVIMATNRAD---------------------------------------------- 295 (398)
T ss_pred -------------------CCCCEEEEEecCCch----------------------------------------------
Confidence 123577888887321
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|.++ +|||..|.|+.++.++...|++..+.. .+..-.+ -+..+++. ..++..++|
T Consensus 296 ----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-----------~~l~~dv---d~~~la~~--t~g~sgaDI 355 (398)
T PTZ00454 296 ----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-----------MNLSEEV---DLEDFVSR--PEKISAADI 355 (398)
T ss_pred ----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-----------CCCCccc---CHHHHHHH--cCCCCHHHH
Confidence 1335555 499999999999999999988753211 1111112 24556653 557777999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
++++......++.+
T Consensus 356 ~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 356 AAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888777754
No 48
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.76 E-value=2.3e-17 Score=181.46 Aligned_cols=222 Identities=24% Similarity=0.342 Sum_probs=152.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|.+.+++.|.+++..+..+...... .+ . .++.++||+||||||||++|+++|+.++.+
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~----~g---~------------~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEE----VG---I------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHh----cC---C------------CCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 4799999999999999755543221111 00 0 124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|.. ...++.+|..+.. ..++||||||||.+...+...+.+.+ ..++..|+.++..-
T Consensus 193 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~l- 262 (389)
T PRK03992 193 FIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEM- 262 (389)
T ss_pred EEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhc-
Confidence 9999999987 5688877 5677888876543 46899999999999876554322222 23566666655310
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
+| .....++++|+|+|..+
T Consensus 263 -----d~----------~~~~~~v~VI~aTn~~~---------------------------------------------- 281 (389)
T PRK03992 263 -----DG----------FDPRGNVKIIAATNRID---------------------------------------------- 281 (389)
T ss_pred -----cc----------cCCCCCEEEEEecCChh----------------------------------------------
Confidence 00 01123578888887321
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|.++ +||+..|.+++++.++..+|++..+. +..+. .+..+..|++. ..++..+.|
T Consensus 282 ----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~-------------~~~~~-~~~~~~~la~~--t~g~sgadl 341 (389)
T PRK03992 282 ----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR-------------KMNLA-DDVDLEELAEL--TEGASGADL 341 (389)
T ss_pred ----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc-------------cCCCC-CcCCHHHHHHH--cCCCCHHHH
Confidence 1235555 59999999999999999999975321 11111 11225666764 467777999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
+.++..+...++.+
T Consensus 342 ~~l~~eA~~~a~~~ 355 (389)
T PRK03992 342 KAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888777654
No 49
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.75 E-value=2.4e-17 Score=177.30 Aligned_cols=176 Identities=13% Similarity=0.195 Sum_probs=128.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhh-HhhcCcEEEEccccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-e~a~~gILfIDEIDkl~ 408 (686)
|..++||||||||||++|+++|+.++.+|+.++++++. ++|+|+. ++.++++|..+.... ...++|||||||||.+.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 58999999999999999999999999999999999998 7899998 899999999875432 24579999999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCc-eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLEg~-~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
+.++. .+..+..+.+...||.+||+- .+.+ .|..+. .-....+.+|+|||-.+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~------~~~~~~V~VIaTTNrpd---------------- 279 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GGDWRE------KEEIPRVPIIVTGNDFS---------------- 279 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cccccc------cccCCCceEEEeCCCcc----------------
Confidence 87652 334444555668999999841 1111 110000 11244588888888322
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
.+.|+|+. |||..+ ..++.++..+|++..+.
T Consensus 280 ----------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r----------- 312 (413)
T PLN00020 280 ----------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFR----------- 312 (413)
T ss_pred ----------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhc-----------
Confidence 14577877 999765 35789999999875211
Q ss_pred hcCCccccCHHHHHHHHHh
Q 005637 566 MNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~ 584 (686)
+..++.+.+..|++.
T Consensus 313 ----~~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 313 ----DDGVSREDVVKLVDT 327 (413)
T ss_pred ----cCCCCHHHHHHHHHc
Confidence 234566777778775
No 50
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-17 Score=188.44 Aligned_cols=177 Identities=26% Similarity=0.350 Sum_probs=139.5
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~--r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.|.|.|+||+.+.+.|. ..+ ..++.... .-|.++||+||||||||+|||++|.+.+
T Consensus 151 DVAG~dEakeel~EiVd-fLk~p~ky~~lGa---------------------kiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 151 DVAGVDEAKEELSELVD-FLKNPKKYQALGA---------------------KIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred hhcCcHHHHHHHHHHHH-HHhCchhhHhccc---------------------ccccceeEecCCCCCcHHHHHHHhcccC
Confidence 48999999999999985 111 01111110 1247999999999999999999999999
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
+||+.++.+++++ -|+|.. .+.++++|..+.. ..||||||||||...+.|+.+-+++++.+|..+++||..|||
T Consensus 209 VPFf~iSGS~FVe-mfVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 209 VPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred CCceeccchhhhh-hhcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 9999999999995 488988 6889999998864 578999999999999999877678888999999999999996
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (686)
.. ..+.+++|.++|..|.
T Consensus 283 F~-------------------~~~gviviaaTNRpdV------------------------------------------- 300 (596)
T COG0465 283 FG-------------------GNEGVIVIAATNRPDV------------------------------------------- 300 (596)
T ss_pred CC-------------------CCCceEEEecCCCccc-------------------------------------------
Confidence 42 1234778888774431
Q ss_pred hHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhh
Q 005637 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 516 ~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
+.|.|+ +|||..|..+.++-...++|++-
T Consensus 301 -------lD~ALlRpgRFDRqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 301 -------LDPALLRPGRFDRQILVELPDIKGREQILKV 331 (596)
T ss_pred -------chHhhcCCCCcceeeecCCcchhhHHHHHHH
Confidence 112222 69999999999998999999874
No 51
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=1.6e-17 Score=181.46 Aligned_cols=226 Identities=21% Similarity=0.309 Sum_probs=157.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.....+||.+...+.+.+.+.. |. ....+||++|++||||+.+|++|...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-~a-----------------------------p~~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-YA-----------------------------PSGLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-hC-----------------------------CCCCcEEEecCCCccHHHHHHHHHHh
Confidence 3344579999999988888852 11 11279999999999999999999533
Q ss_pred ----cCCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHH
Q 005637 354 ----VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (686)
Q Consensus 354 ----l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~v 425 (686)
...||+.+||+.+.+ +..+|+.. ..++.......+.++.+.+|+||+|||+.+++. .
T Consensus 125 s~r~~~~PFI~~NCa~~~en~~~~eLFG~~k-GaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~ 189 (403)
T COG1221 125 SARRAEAPFIAFNCAAYSENLQEAELFGHEK-GAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------G 189 (403)
T ss_pred hhcccCCCEEEEEHHHhCcCHHHHHHhcccc-ceeecccCCcCchheecCCCEEehhhhhhCCHh--------------H
Confidence 367999999999964 33555553 233334455567899999999999999999998 9
Q ss_pred HHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005637 426 QQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (686)
Q Consensus 426 q~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~ 504 (686)
|..||++|| |...+|.+. +....++.+||+++ .++++.+..+
T Consensus 190 Q~kLl~~le~g~~~rvG~~-----------~~~~~dVRli~AT~-~~l~~~~~~g------------------------- 232 (403)
T COG1221 190 QEKLLRVLEEGEYRRVGGS-----------QPRPVDVRLICATT-EDLEEAVLAG------------------------- 232 (403)
T ss_pred HHHHHHHHHcCceEecCCC-----------CCcCCCceeeeccc-cCHHHHHHhh-------------------------
Confidence 999999999 444434221 23345688888877 3444444321
Q ss_pred hHHHHHhhcCchHHHhcCCChhhhc-ccCeEEEccCcChH--HHHHHHhhhHHHHHHHHHHHHhhcCCccc-cCHHHHHH
Q 005637 505 VTSSLMETVESSDLIAYGLIPEFVG-RFPVLVSLLALTEN--QLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRL 580 (686)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PELl~-R~~~iI~f~pLs~e--eL~~IL~~~l~~L~kq~~~~~~~~gv~l~-~s~eAl~~ 580 (686)
..|.. |+..+|.++||.+. |+..+++.++....++ .+..+. .++++++.
T Consensus 233 --------------------~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~-------l~~~~~~~~~~a~~~ 285 (403)
T COG1221 233 --------------------ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR-------LGLPLSVDSPEALRA 285 (403)
T ss_pred --------------------cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCCCHHHHHH
Confidence 23555 66788999999975 4444454433333222 233443 34699999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHhcC
Q 005637 581 IAKKAISKNTGARGLRSLLENILMDAMYEI 610 (686)
Q Consensus 581 La~~a~~~~~GAR~Lr~vIe~il~~al~e~ 610 (686)
|.. |+|.++.|+|+|+|++++..+-.+.
T Consensus 286 L~~--y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 286 LLA--YDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHh--CCCCCcHHHHHHHHHHHHHHhcccc
Confidence 998 5677777999999999998775443
No 52
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.74 E-value=4.6e-17 Score=185.27 Aligned_cols=285 Identities=14% Similarity=0.198 Sum_probs=177.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|.+.+.+.+...+. +. .....+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~----~~--------------------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----KL--------------------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----HH--------------------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 47899988887777664 11 0112689999999999999999997654
Q ss_pred CCCEEEEeccccccc----CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
..||+.+||+.+.+. ..+|+..+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~~~-~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAPGA-YPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCCCC-cCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 469999999887521 112211100 0000011234566788999999999999988 999999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
++++...+. +.+....+ ..++.+|++++ .++++.+.++
T Consensus 320 ~~l~~~~~~-------~~g~~~~~---~~~vRiI~st~-~~l~~l~~~g------------------------------- 357 (520)
T PRK10820 320 RFLNDGTFR-------RVGEDHEV---HVDVRVICATQ-KNLVELVQKG------------------------------- 357 (520)
T ss_pred HHHhcCCcc-------cCCCCcce---eeeeEEEEecC-CCHHHHHHcC-------------------------------
Confidence 999832221 11111112 23467777765 3455544433
Q ss_pred hhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCC-ccccCHHHHHHHHHhcC
Q 005637 511 ETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAI 586 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv-~l~~s~eAl~~La~~a~ 586 (686)
.|.++|..|+. ..|.++||.+ +|+..++...+.++.+++ |. ...++++++++|.. |
T Consensus 358 -----------~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~-------g~~~~~ls~~a~~~L~~--y 417 (520)
T PRK10820 358 -----------EFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQ-------GVPRPKLAADLNTVLTR--Y 417 (520)
T ss_pred -----------CccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHhc--C
Confidence 26677888874 5688999986 678888877555543332 32 45799999999998 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCCcceEEcCCChHHHHHHHHhhhhhhhhhhc
Q 005637 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLELQTNV 666 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (686)
+|+.+.|+|+++|++++..+-....... .+. +-+. .... .. .. ....+.++..+++.+++.++-.-..
T Consensus 418 ~WPGNvreL~nvl~~a~~~~~~~~i~~~----~~~--l~~~--~~~~-~~-~~--~~~~~~L~~~~~~~E~~~i~~~l~~ 485 (520)
T PRK10820 418 GWPGNVRQLKNAIYRALTQLEGYELRPQ----DIL--LPDY--DAAV-AV-GE--DAMEGSLDEITSRFERSVLTRLYRN 485 (520)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCcccHH----HcC--Cccc--cccc-cc-cc--ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 7777789999999998874321111110 100 0000 0000 00 00 0112467788888888776655445
Q ss_pred cCCCCCCCcccCccc
Q 005637 667 AGADGEPEMETEIPS 681 (686)
Q Consensus 667 ~~~~~~~~~~~~~~~ 681 (686)
+++..+.+..++||.
T Consensus 486 ~~~~~~aA~~LGisr 500 (520)
T PRK10820 486 YPSTRKLAKRLGVSH 500 (520)
T ss_pred CCCHHHHHHHhCCCH
Confidence 667778888888874
No 53
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.74 E-value=4.4e-17 Score=185.90 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=152.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|++.+.+.+.+.+... .....+|||+|++|||||++|++|....
T Consensus 197 ~liG~s~~~~~~~~~~~~~------------------------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVV------------------------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHHHH------------------------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4789998888888777511 0113689999999999999999998775
Q ss_pred CCCEEEEeccccccc----CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.||+.+||..+.+. ..+|...+ .+........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHEKG-AFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCCCC-ccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 569999999887421 11111100 00000011233466778999999999999998 999999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
++|+...+.- .+..+.+. .++.+|++++ .++++.+.+
T Consensus 312 ~~l~~~~~~~-------~~~~~~~~---~~~riI~~s~-~~l~~~~~~-------------------------------- 348 (534)
T TIGR01817 312 RVLQEGEFER-------VGGNRTLK---VDVRLVAATN-RDLEEAVAK-------------------------------- 348 (534)
T ss_pred HHHhcCcEEE-------CCCCceEe---ecEEEEEeCC-CCHHHHHHc--------------------------------
Confidence 9998332210 11112222 3467777765 344443332
Q ss_pred hhcCchHHHhcCCChhhhcccCe-EEEccCcC--hHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCC
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs--~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~ 587 (686)
..|.++|..|+.. .|.++||. .+|+..++..++.++.+++ +..+.+++++++.|.. |+
T Consensus 349 ----------~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~~--~~ 409 (534)
T TIGR01817 349 ----------GEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN-------GRPLTITPSAIRVLMS--CK 409 (534)
T ss_pred ----------CCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc-------CCCCCCCHHHHHHHHh--CC
Confidence 2477889999954 68899998 5889999888665554432 3347899999999999 57
Q ss_pred CCCChhHHHHHHHHHHHH
Q 005637 588 KNTGARGLRSLLENILMD 605 (686)
Q Consensus 588 ~~~GAR~Lr~vIe~il~~ 605 (686)
|+.+.|+|+++|++++..
T Consensus 410 WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 410 WPGNVRELENCLERTATL 427 (534)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 777889999999998764
No 54
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.74 E-value=6.7e-17 Score=173.85 Aligned_cols=290 Identities=15% Similarity=0.197 Sum_probs=180.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|.+.+.+.+.+.+... .....+|||+|++||||+++|++|.... +
T Consensus 8 liG~S~~~~~~~~~i~~~------------------------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~ 57 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRL------------------------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (326)
T ss_pred cEECCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccC
Confidence 689999999888887511 0113789999999999999999997665 4
Q ss_pred CCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005637 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (686)
Q Consensus 356 ~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (686)
.||+.+||..+.+ ..++|...+. +........+.++.+.+|+||||||+.++.. +|..|+.
T Consensus 58 ~pfv~v~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~~ 122 (326)
T PRK11608 58 GPFISLNCAALNENLLDSELFGHEAGA-FTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLR 122 (326)
T ss_pred CCeEEEeCCCCCHHHHHHHHccccccc-cCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHHH
Confidence 6999999998742 1112211000 0000001134466788999999999999988 9999999
Q ss_pred HHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 432 lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
+++...+. ..+... .+ ..++.+|++++ .++++.+.++
T Consensus 123 ~l~~~~~~-------~~g~~~--~~-~~~~RiI~~s~-~~l~~l~~~g-------------------------------- 159 (326)
T PRK11608 123 VIEYGELE-------RVGGSQ--PL-QVNVRLVCATN-ADLPAMVAEG-------------------------------- 159 (326)
T ss_pred HHhcCcEE-------eCCCCc--ee-eccEEEEEeCc-hhHHHHHHcC--------------------------------
Confidence 99833221 011111 11 13577787766 2344433322
Q ss_pred hcCchHHHhcCCChhhhccc-CeEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCc--cccCHHHHHHHHHhcC
Q 005637 512 TVESSDLIAYGLIPEFVGRF-PVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~--l~~s~eAl~~La~~a~ 586 (686)
.|.++|..|| ...|.++||.+ +|+..++..++..+.+++ +.. ..+++++++.|.. |
T Consensus 160 ----------~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~~s~~al~~L~~--y 220 (326)
T PRK11608 160 ----------KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-------GLPLFPGFTERARETLLN--Y 220 (326)
T ss_pred ----------CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCCCHHHHHHHHh--C
Confidence 3668888999 55799999986 788888887665554433 323 4799999999999 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCcc--ceEEEchhccc-cccCCCcceEEcCCChHHHHHHHHhhh-hhhh
Q 005637 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVI--DAVVVDEEAVG-SEDRGCGAKILYGKGALDRYLAQHKRK-DLEL 662 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i--~~vlVdee~v~-~~~~g~~~~i~~~~~~l~~~~~~~~~~-~~~~ 662 (686)
+|..+.|+|++++++++..+-....... .+ ........... ......... .....+..++++.|++ +.+.
T Consensus 221 ~WPGNvrEL~~vl~~a~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~Er~~I~~a 294 (326)
T PRK11608 221 RWPGNIRELKNVVERSVYRHGTSEYPLD----NIIIDPFKRRPAEEAIAVSETTSLP--TLPLDLREWQHQQEKELLQRS 294 (326)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCchh----hcccccccccccccccccccccccc--cccccHHHHHHHHHHHHHHHH
Confidence 7777779999999998874322111100 00 00000000000 000000000 0001466677787777 5566
Q ss_pred hhhccCCCCCCCcccCccc
Q 005637 663 QTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~ 681 (686)
+....|...+.+..++||.
T Consensus 295 L~~~~gn~~~aA~~LGIsR 313 (326)
T PRK11608 295 LQQAKFNQKRAAELLGLTY 313 (326)
T ss_pred HHHhCCCHHHHHHHhCCCH
Confidence 6777889999999999974
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.74 E-value=3.8e-17 Score=189.09 Aligned_cols=219 Identities=24% Similarity=0.326 Sum_probs=152.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++++|+.+.+.+. .++....... . +. ..+.++||+||||||||++|+++|..++.|
T Consensus 184 dv~G~~~~k~~l~eiv~-~lk~~~~~~~----~---g~------------~~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVS-FLKKPERFTA----V---GA------------KIPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hccChHHHHHHHHHHHH-HHhCHHHHhh----c---cC------------CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999998874 1221111000 0 00 123789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..++|.. ...++.+|..+.. ..++||||||||.+...++.+..+.+...+.+++.||..|||..
T Consensus 244 ~i~is~s~f~-~~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 244 FFSISGSEFV-EMFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred eeeccHHHHH-HHhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 9999999886 3466665 4567777776543 57899999999999887655434445555667888888887421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+.
T Consensus 318 -------------------~~~~ViVIaaTN~~~~--------------------------------------------- 333 (638)
T CHL00176 318 -------------------GNKGVIVIAATNRVDI--------------------------------------------- 333 (638)
T ss_pred -------------------CCCCeeEEEecCchHh---------------------------------------------
Confidence 1235788888874320
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
+.|.++ +|||..+.+..++.++..+|++..+.. ....++..+..|++. ..++..++|
T Consensus 334 -----LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--------------~~~~~d~~l~~lA~~--t~G~sgaDL 392 (638)
T CHL00176 334 -----LDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--------------KKLSPDVSLELIARR--TPGFSGADL 392 (638)
T ss_pred -----hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--------------cccchhHHHHHHHhc--CCCCCHHHH
Confidence 113343 599999999999999999999864322 111234556777764 455667888
Q ss_pred HHHHHHHHHHHH
Q 005637 596 RSLLENILMDAM 607 (686)
Q Consensus 596 r~vIe~il~~al 607 (686)
++++++....+.
T Consensus 393 ~~lvneAal~a~ 404 (638)
T CHL00176 393 ANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHH
Confidence 888887765543
No 56
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.74 E-value=5.4e-17 Score=182.93 Aligned_cols=183 Identities=23% Similarity=0.304 Sum_probs=132.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
|.|++..++.+.++|..++.+...... .+ ..++.++||+||||||||++|+++|+.++.+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~----~g---------------l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYRE----YD---------------LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHh----cc---------------CCCCcceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 789999999999999865543221111 00 0124789999999999999999999998644
Q ss_pred ---------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 358 ---------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 358 ---------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
|+.+..+++. ..|+|+. +..++.+|..+........++||||||||.+...|+.+ .+.+. ...+.+.
T Consensus 245 ~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~il~~ 320 (512)
T TIGR03689 245 GAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETTVVPQ 320 (512)
T ss_pred ccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHHHHHH
Confidence 5566666665 5688887 67788888776543334468999999999998776432 12232 2457789
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
||..|+|.. ...++++|+|+|..+
T Consensus 321 LL~~LDgl~-------------------~~~~ViVI~ATN~~d------------------------------------- 344 (512)
T TIGR03689 321 LLSELDGVE-------------------SLDNVIVIGASNRED------------------------------------- 344 (512)
T ss_pred HHHHhcccc-------------------cCCceEEEeccCChh-------------------------------------
Confidence 999998421 234688898888432
Q ss_pred HHhhcCchHHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhH
Q 005637 509 LMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPK 553 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l 553 (686)
.+.|.+++ |||..|.|+.++.++..+|++..+
T Consensus 345 -------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 345 -------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred -------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 14477775 999999999999999999998754
No 57
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.73 E-value=8.8e-17 Score=187.04 Aligned_cols=213 Identities=17% Similarity=0.286 Sum_probs=149.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|.+.+.+.+.+.+...- ....+|||+|++||||+++|++|.+..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a------------------------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA------------------------------KSSFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh------------------------------CcCCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 36899888888777764110 112689999999999999999998765
Q ss_pred CCCEEEEecccccccCcccccHHHHHHHHHhh--------cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHH
Q 005637 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTV--------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (686)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~--------a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (686)
+.||+.+||..+.+ +..-.++|.. ..+.++.+.+|+||||||+.++.. +|
T Consensus 376 ~~pfv~vnc~~~~~--------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q 433 (638)
T PRK11388 376 AGPYIAVNCQLYPD--------EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQ 433 (638)
T ss_pred CCCeEEEECCCCCh--------HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH--------------HH
Confidence 46999999988752 1111223321 123466678999999999999998 99
Q ss_pred HHHHHHHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhh
Q 005637 427 QALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (686)
Q Consensus 427 ~~LL~lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~ 505 (686)
..|+++|+...+ .+ +..+.+.+ ++.+|+|++ .++++.+.++
T Consensus 434 ~~Ll~~l~~~~~~~~--------~~~~~~~~---~~riI~~t~-~~l~~~~~~~-------------------------- 475 (638)
T PRK11388 434 SALLQVLKTGVITRL--------DSRRLIPV---DVRVIATTT-ADLAMLVEQN-------------------------- 475 (638)
T ss_pred HHHHHHHhcCcEEeC--------CCCceEEe---eEEEEEecc-CCHHHHHhcC--------------------------
Confidence 999999983322 21 11122233 366777766 4455555443
Q ss_pred HHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 506 TSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 506 ~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
.|.++|..|+. ..|.++||.+ +|+..++...+.++.+++ +..+.+++++++.|.
T Consensus 476 ----------------~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 476 ----------------RFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF-------STRLKIDDDALARLV 532 (638)
T ss_pred ----------------CChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCCCCcCHHHHHHHH
Confidence 35566777774 4588888886 588888887665553332 334679999999999
Q ss_pred HhcCCCCCChhHHHHHHHHHHHH
Q 005637 583 KKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 583 ~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
+ |+|+.+.|+|+++|++++..
T Consensus 533 ~--y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 533 S--YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred c--CCCCChHHHHHHHHHHHHHh
Confidence 9 56777779999999998763
No 58
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.72 E-value=5.3e-17 Score=184.56 Aligned_cols=216 Identities=20% Similarity=0.317 Sum_probs=146.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh-----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~----- 353 (686)
++|+..+.+.+...+.. + .....+|||+|++||||+++|++|...
T Consensus 221 iiG~S~~m~~~~~~i~~-~-----------------------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTILL-Y-----------------------------ARSSAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHHH-H-----------------------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 79999999988888741 0 011378999999999999999999876
Q ss_pred ------cCCCEEEEecccccc----cCcccccHHHHHHHHH-hhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 ------VNVPFVIADATTLTQ----AGYVGEDVESILYKLL-TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 ------l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~-~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
.+.||+.+||+.+.+ +..+|+..+. +.... ....+.++.+.+|+||||||+.|+..
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~~ga-ftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------------ 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGA-FTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------------ 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCcccc-ccCccccccCCchhccCCCEEEEcChHhCCHH------------
Confidence 367999999998753 2223322111 11100 11235677888999999999999998
Q ss_pred HHHHHHHHHHHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005637 423 EGVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~ 501 (686)
+|..|+++|+.+.+ .+ +..+.+. .++.+|++++ .+|++.+.++.
T Consensus 338 --~Q~kLl~~L~e~~~~r~--------G~~~~~~---~dvRiIaat~-~~L~~~v~~g~--------------------- 382 (538)
T PRK15424 338 --LQTRLLRVLEEKEVTRV--------GGHQPVP---VDVRVISATH-CDLEEDVRQGR--------------------- 382 (538)
T ss_pred --HHHHHHhhhhcCeEEec--------CCCceec---cceEEEEecC-CCHHHHHhccc---------------------
Confidence 99999999984333 22 1112222 3467777776 45666555443
Q ss_pred hhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH
Q 005637 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (686)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl 578 (686)
|+++|..|+. ..|.++||.+ +|+..++..++.+...++ ...++++++
T Consensus 383 ---------------------Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~ 432 (538)
T PRK15424 383 ---------------------FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---------SAPFSAALR 432 (538)
T ss_pred ---------------------chHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHH
Confidence 5566677774 4588888886 678888877554432221 223666655
Q ss_pred -------HHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 579 -------RLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 579 -------~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.|.. |+|+.+.|+|+++|++++.
T Consensus 433 ~~~~~a~~~L~~--y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 433 QGLQQCETLLLH--YDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HhhHHHHHHHHh--CCCCchHHHHHHHHHHHHH
Confidence 66666 6788888999999999877
No 59
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.71 E-value=9.4e-17 Score=182.45 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=175.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|+..+.+.+.+.+... .....+|||.|++||||+++|++|.... +
T Consensus 214 iiG~S~~m~~~~~~i~~~------------------------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLY------------------------------ARSDATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHHHH------------------------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 789999888888877411 1113789999999999999999998664 5
Q ss_pred CCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005637 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (686)
Q Consensus 356 ~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (686)
.||+.+||..+.+ +..+|+..+...........+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~ 329 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLR 329 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHH
Confidence 7999999998753 222333211110000011235567788999999999999998 9999999
Q ss_pred HHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 432 MLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 432 lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
+|+...+ .+ +..+.+.+ ++.+|++++ .+|++.+.++
T Consensus 330 ~L~~~~~~r~--------g~~~~~~~---dvRiIaat~-~~l~~~v~~g------------------------------- 366 (526)
T TIGR02329 330 VLEEREVVRV--------GGTEPVPV---DVRVVAATH-CALTTAVQQG------------------------------- 366 (526)
T ss_pred HHhcCcEEec--------CCCceeee---cceEEeccC-CCHHHHhhhc-------------------------------
Confidence 9984332 22 11122222 466777766 3444444333
Q ss_pred hhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHH-------
Q 005637 511 ETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRL------- 580 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~------- 580 (686)
.|.++|..|+. ..|.++||.+ +|+..++..++.++..++ .+.+++++++.
T Consensus 367 -----------~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~~~~~~~~~~ 426 (526)
T TIGR02329 367 -----------RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---------RLPDSEAAAQVLAGVADP 426 (526)
T ss_pred -----------chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHHHHhHHHHHH
Confidence 35677888885 5689999986 788888887655543321 34589999888
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCC---cceEEcCCChHHHHHHHHhh
Q 005637 581 IAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGC---GAKILYGKGALDRYLAQHKR 657 (686)
Q Consensus 581 La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~---~~~i~~~~~~l~~~~~~~~~ 657 (686)
|.. |+|+.+.|+|++++++++...... .. ..|+.+.+....+.. ..........+... +++++
T Consensus 427 L~~--y~WPGNvrEL~nvier~~i~~~~~--~~---------~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er 492 (526)
T TIGR02329 427 LQR--YPWPGNVRELRNLVERLALELSAM--PA---------GALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEA 492 (526)
T ss_pred HHh--CCCCchHHHHHHHHHHHHHhcccC--CC---------CccCHHHhhhhchhhcccccccccCccchHHH-HHHHH
Confidence 777 677788899999999987753210 00 011222111000000 00000000123322 45555
Q ss_pred h-hhhhhhhccCCCCCCCcccCccc
Q 005637 658 K-DLELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 658 ~-~~~~~~~~~~~~~~~~~~~~~~~ 681 (686)
+ +.+.+....|...+.+..++||.
T Consensus 493 ~~I~~aL~~~~Gn~~~aA~~LGIsR 517 (526)
T TIGR02329 493 LAVRAALERFGGDRDAAAKALGISR 517 (526)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 5 34556777888888898898874
No 60
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.2e-17 Score=181.46 Aligned_cols=218 Identities=28% Similarity=0.381 Sum_probs=158.6
Q ss_pred ccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 279 VIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~--~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
|.|..++|+.|.+.+.++- ..++....-|. ..++||+||||||||+||-++|..++.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCCe
Confidence 7899999999999998543 33443332221 379999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
.|+.+.+.++. +.|+|.+ +..++.+|.+|.. +.|||||+||+|.+.++|+-.+ ..++. ++.++||..|||.
T Consensus 728 ~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDs--TGVTD-RVVNQlLTelDG~ 798 (952)
T KOG0735|consen 728 RFISVKGPELL-SKYIGAS-EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDS--TGVTD-RVVNQLLTELDGA 798 (952)
T ss_pred eEEEecCHHHH-HHHhccc-HHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCC--CCchH-HHHHHHHHhhccc
Confidence 99999999998 7899999 7889999999864 7999999999999999976533 33333 4999999999975
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
... ..+.+++++.-.||
T Consensus 799 Egl-------------------~GV~i~aaTsRpdl-------------------------------------------- 815 (952)
T KOG0735|consen 799 EGL-------------------DGVYILAATSRPDL-------------------------------------------- 815 (952)
T ss_pred ccc-------------------ceEEEEEecCCccc--------------------------------------------
Confidence 321 12444444432221
Q ss_pred HHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhH
Q 005637 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (686)
Q Consensus 517 dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~ 594 (686)
+.|.|+ +|+|..|.-+.+++.+..+|++.-.+. ...-++--++.++.+ +.++..-.
T Consensus 816 ------iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--------------~~~~~~vdl~~~a~~--T~g~tgAD 873 (952)
T KOG0735|consen 816 ------IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--------------LLKDTDVDLECLAQK--TDGFTGAD 873 (952)
T ss_pred ------cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--------------cCCccccchHHHhhh--cCCCchhh
Confidence 123333 699999999999999999998752221 122234557788876 44444467
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005637 595 LRSLLENILMDAMYEIP 611 (686)
Q Consensus 595 Lr~vIe~il~~al~e~~ 611 (686)
|+.++-..-..++.++.
T Consensus 874 lq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 874 LQSLLYNAQLAAVHEIL 890 (952)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877766555555443
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=1.5e-16 Score=176.82 Aligned_cols=221 Identities=21% Similarity=0.294 Sum_probs=148.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++..++.+.+++..+..+...... . ++ .++.++||+||||||||++|+++|+.++.+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~----~--------------gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDD----I--------------GI-KPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHh----c--------------CC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3799999999999999744432111000 0 00 124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+...||..|+|..
T Consensus 245 fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 245 FLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred EEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 9999999887 4688887 5678888876543 46899999999999876543222222221223334444444210
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++.+|+++|..+
T Consensus 319 -------------------~~~~V~VI~ATNr~d---------------------------------------------- 333 (438)
T PTZ00361 319 -------------------SRGDVKVIMATNRIE---------------------------------------------- 333 (438)
T ss_pred -------------------ccCCeEEEEecCChH----------------------------------------------
Confidence 123577888877321
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GAR~ 594 (686)
.+.|.++ +||+..|.|+.++.++..+|++..+. ++.++++ -++.++.. ..++.+..
T Consensus 334 ----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~---------------k~~l~~dvdl~~la~~--t~g~sgAd 392 (438)
T PTZ00361 334 ----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS---------------KMTLAEDVDLEEFIMA--KDELSGAD 392 (438)
T ss_pred ----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh---------------cCCCCcCcCHHHHHHh--cCCCCHHH
Confidence 0224454 69999999999999999999975321 1122222 24455553 45666788
Q ss_pred HHHHHHHHHHHHHhc
Q 005637 595 LRSLLENILMDAMYE 609 (686)
Q Consensus 595 Lr~vIe~il~~al~e 609 (686)
|+.++..+...|+.+
T Consensus 393 I~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 393 IKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988877776654
No 62
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-16 Score=162.73 Aligned_cols=144 Identities=25% Similarity=0.386 Sum_probs=110.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|-|.|-.|+.+.++|..+.....-..+ .| + -||+++||+||||||||.||+++|+.....|
T Consensus 157 iggld~qkqeireavelplt~~~ly~q----ig--------------i-dpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQ----IG--------------I-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHH----hC--------------C-CCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 789999999999999755432111111 00 0 1358999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHH---hC
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EG 435 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lL---Eg 435 (686)
+++..++++ ..|.|+. -.++++.|+.+.. ..|+||||||||.+..+|-....|.|.. +|..|+++| ||
T Consensus 218 irvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadre---vqril~ellnqmdg 288 (408)
T KOG0727|consen 218 IRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADRE---VQRILIELLNQMDG 288 (408)
T ss_pred eeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHH---HHHHHHHHHHhccC
Confidence 999999999 5799998 5889999998765 5789999999999999887665566644 666665555 43
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
.. .+.|+-+|+++|-
T Consensus 289 fd-------------------q~~nvkvimatnr 303 (408)
T KOG0727|consen 289 FD-------------------QTTNVKVIMATNR 303 (408)
T ss_pred cC-------------------cccceEEEEecCc
Confidence 21 2567889999884
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.69 E-value=6.9e-16 Score=168.13 Aligned_cols=219 Identities=26% Similarity=0.354 Sum_probs=147.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|.+.+++.|.+++..+..+...... .+ + .++.++||+||||||||++|+++|+.++.+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~----~g--------------~-~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEE----VG--------------I-EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHh----cC--------------C-CCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 4899999999999998744332111100 00 0 124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHH---h
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 434 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lL---E 434 (686)
|+.+.++++. ..|+|.. ...+..++..+.. ..++||||||+|.+...+.....+.+. .++..|+.++ +
T Consensus 184 ~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~---~~~~~l~~ll~~ld 254 (364)
T TIGR01242 184 FIRVVGSELV-RKYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAELD 254 (364)
T ss_pred EEecchHHHH-HHhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccH---HHHHHHHHHHHHhh
Confidence 9999988776 4577775 4566777765432 467899999999998765433222232 2455555554 3
Q ss_pred CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcC
Q 005637 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (686)
Q Consensus 435 g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (686)
+. -...++.+|+|+|..+
T Consensus 255 ~~-------------------~~~~~v~vI~ttn~~~------------------------------------------- 272 (364)
T TIGR01242 255 GF-------------------DPRGNVKVIAATNRPD------------------------------------------- 272 (364)
T ss_pred CC-------------------CCCCCEEEEEecCChh-------------------------------------------
Confidence 21 0123578888887321
Q ss_pred chHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 515 ~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
.+.|.++ +||+.++.++.++.++..+|++..+.. ..+. .+.-+..|++. ..++..
T Consensus 273 -------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~-------------~~l~-~~~~~~~la~~--t~g~sg 329 (364)
T TIGR01242 273 -------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK-------------MKLA-EDVDLEAIAKM--TEGASG 329 (364)
T ss_pred -------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc-------------CCCC-ccCCHHHHHHH--cCCCCH
Confidence 0224444 599999999999999999998752111 1111 11125666664 456778
Q ss_pred hHHHHHHHHHHHHHHhc
Q 005637 593 RGLRSLLENILMDAMYE 609 (686)
Q Consensus 593 R~Lr~vIe~il~~al~e 609 (686)
+.|+.++......++.+
T Consensus 330 ~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 330 ADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999888777654
No 64
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.6e-16 Score=165.97 Aligned_cols=225 Identities=20% Similarity=0.298 Sum_probs=154.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|-|++.+|+.+.+.|..+.++..... ..++..|+.+|||+||||||||.+|+++|++.+.+|
T Consensus 94 IggLe~v~~~L~e~VilPlr~pelF~------------------~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f 155 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPELFA------------------KGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF 155 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhhhc------------------ccccccCCccceecCCCCchHHHHHHHHHHHcCCCc
Confidence 79999999999999986666533221 113344679999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++++.++ ..|+|+. ++.+..+|..+. +-+|+||||||+|.+...|.. +.++.-.-+.+.+...=|
T Consensus 156 Inv~~s~lt-~KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WD---- 222 (386)
T KOG0737|consen 156 INVSVSNLT-SKWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWD---- 222 (386)
T ss_pred ceeeccccc-hhhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhc----
Confidence 999999999 5899998 789999988765 358999999999999987632 111111113333333334
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcc-cHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~-~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
|-.++.+ ..++++.++|-. ||+
T Consensus 223 -----Gl~s~~~--------~rVlVlgATNRP~DlD-------------------------------------------- 245 (386)
T KOG0737|consen 223 -----GLSSKDS--------ERVLVLGATNRPFDLD-------------------------------------------- 245 (386)
T ss_pred -----cccCCCC--------ceEEEEeCCCCCccHH--------------------------------------------
Confidence 3222221 125666565522 222
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
..+++|++..+...-++.++..+|++-.+. ...+.-.|+ +..++. .+.+|..+.|++
T Consensus 246 -------eAiiRR~p~rf~V~lP~~~qR~kILkviLk-----------~e~~e~~vD---~~~iA~--~t~GySGSDLke 302 (386)
T KOG0737|consen 246 -------EAIIRRLPRRFHVGLPDAEQRRKILKVILK-----------KEKLEDDVD---LDEIAQ--MTEGYSGSDLKE 302 (386)
T ss_pred -------HHHHHhCcceeeeCCCchhhHHHHHHHHhc-----------ccccCcccC---HHHHHH--hcCCCcHHHHHH
Confidence 346778887888877888888999875321 122222232 445555 356777799999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 005637 598 LLENILMDAMYEIPDVR 614 (686)
Q Consensus 598 vIe~il~~al~e~~~~~ 614 (686)
++.......+.++...+
T Consensus 303 lC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 303 LCRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHHhHhHHHHHHHhc
Confidence 99888777777766553
No 65
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.67 E-value=6.1e-16 Score=163.85 Aligned_cols=257 Identities=17% Similarity=0.227 Sum_probs=170.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.++|+.|++||||..+||+..... ..||+.++|+.+-+ +..+|+.++ -....+.++.+.+|.+|+||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLDe 301 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLDE 301 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEeeh
Confidence 689999999999999999986554 67999999998842 333333322 12234568889999999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcccc
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~ 482 (686)
|..+++. +|.+||+.|. |+.-+|. ....+.+| +.+||++. .+|.+.+.++.++
T Consensus 302 IgEmSp~--------------lQaKLLRFL~DGtFRRVG--------ee~Ev~vd---VRVIcatq-~nL~~lv~~g~fR 355 (511)
T COG3283 302 IGEMSPR--------------LQAKLLRFLNDGTFRRVG--------EDHEVHVD---VRVICATQ-VNLVELVQKGKFR 355 (511)
T ss_pred hhhcCHH--------------HHHHHHHHhcCCceeecC--------CcceEEEE---EEEEeccc-ccHHHHHhcCchH
Confidence 9999998 9999999997 5444442 22233444 77788765 7899999999998
Q ss_pred CCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHH
Q 005637 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (686)
Q Consensus 483 ~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~ 562 (686)
.+++|+.++-.. -.|+|+.|.+++ .-+++.++.++..+
T Consensus 356 eDLfyRLNVLtl----------------------------~~PpLRer~~di-----------~pL~e~Fv~q~s~e--- 393 (511)
T COG3283 356 EDLFYRLNVLTL----------------------------NLPPLRERPQDI-----------MPLAELFVQQFSDE--- 393 (511)
T ss_pred HHHHHHhheeee----------------------------cCCccccCcccc-----------hHHHHHHHHHHHHH---
Confidence 888887776432 136677666544 33444433333222
Q ss_pred HHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCCcce--
Q 005637 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK-- 640 (686)
Q Consensus 563 ~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~~~~-- 640 (686)
+. -...+++++.+.+|.+ |.|.+++|+|.|+|=+.+...-... ++.+.+.-.+.+....
T Consensus 394 -lg--~p~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s~~Eg~~--------------l~i~~i~Lp~~~~~~~~~ 454 (511)
T COG3283 394 -LG--VPRPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALTLLEGYE--------------LRIEDILLPDYDAATVVG 454 (511)
T ss_pred -hC--CCCCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHHHhccCc--------------cchhhcccCCcccccccc
Confidence 11 1256899999999999 5777788999999988766432111 1111111111100000
Q ss_pred EEcCCChHHHHHHHHhhhhhhhhhhccCCCCCCCcccCcc
Q 005637 641 ILYGKGALDRYLAQHKRKDLELQTNVAGADGEPEMETEIP 680 (686)
Q Consensus 641 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (686)
-....+.++..++..++.-.+..-+.+-|-..-++-+++|
T Consensus 455 ~~~~~gsLdei~~~fE~~VL~rly~~yPStRkLAkRLgvS 494 (511)
T COG3283 455 EDALEGSLDEIVSRFERSVLTRLYRSYPSTRKLAKRLGVS 494 (511)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhCCc
Confidence 0124788999999999888766666666666555555555
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.67 E-value=1.7e-15 Score=168.41 Aligned_cols=259 Identities=17% Similarity=0.284 Sum_probs=162.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc----CcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.+++++|++||||+++|+++.... +.||+.++|..+.+. ..+|...+ .+........+.++.+.+|+|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKG-AFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCC-CcCCCccCCCCceeECCCCEEEEec
Confidence 689999999999999999998765 468999999887421 11111100 0000001123445667899999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccC
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
|+.++.. +|..|+++++...+. +.+.... ...++.+|++++ .++++.+.++
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~---~~~~~rii~~~~-~~l~~~~~~~---- 292 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIE-------RLGGREE---IPVDVRIVCATN-QDLKRMIAEG---- 292 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEE-------eCCCCce---eeeceEEEEecC-CCHHHHHHcC----
Confidence 9999988 999999999843321 0111111 123577777776 3444444433
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHH
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~ 560 (686)
.|.++|..|+. ..|.++||.+ +|+..++..++.++.+++
T Consensus 293 --------------------------------------~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 334 (445)
T TIGR02915 293 --------------------------------------TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL 334 (445)
T ss_pred --------------------------------------CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh
Confidence 35667777774 4588888875 678888877655554433
Q ss_pred HHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCCcce
Q 005637 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (686)
Q Consensus 561 ~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~~~~ 640 (686)
.+ ....+++++++.|.. |+|+.+.|+|+++|++++..+-... |+.+.+..........
T Consensus 335 ~~------~~~~~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~~~~~~~--------------i~~~~l~~~~~~~~~~ 392 (445)
T TIGR02915 335 KR------KTKGFTDDALRALEA--HAWPGNVRELENKVKRAVIMAEGNQ--------------ITAEDLGLDARERAET 392 (445)
T ss_pred CC------CCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCCc--------------ccHHHcCCcccccccc
Confidence 11 135799999999999 5677778999999999886432111 1222211000000000
Q ss_pred EEcCCChHHHHHHHHhhh-hhhhhhhccCCCCCCCcccCccc
Q 005637 641 ILYGKGALDRYLAQHKRK-DLELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 641 i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 681 (686)
.....+..++++.+++ +.+.+...+|...+.+..++||.
T Consensus 393 --~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lgisr 432 (445)
T TIGR02915 393 --PLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITR 432 (445)
T ss_pred --ccccCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 0011355566666655 45556777788888898999874
No 67
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=9.6e-16 Score=174.85 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=139.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
++||+.+++.+..++..+ .+.++||+||||||||++|+++++.+
T Consensus 67 iiGqs~~i~~l~~al~~~--------------------------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 114 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP--------------------------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNP 114 (531)
T ss_pred eeCcHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 799999999888665310 12689999999999999999997642
Q ss_pred ------CCCEEEEecccc--cccCc----ccccHHHHH--HHHH------hhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 355 ------NVPFVIADATTL--TQAGY----VGEDVESIL--YKLL------TVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 355 ------~~pfv~v~~s~l--~~sgy----vG~~~~~~l--~~l~------~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
+.+|+.+||+.. .+.++ +|....... ...+ ....+.++.+.+|+||||||+.+++.
T Consensus 115 ~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 115 ASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred CCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH----
Confidence 368999998742 11111 110000000 0000 11234566778899999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCc-------e--EeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN-------I--QIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~-------i--~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
+|+.||++||...+.+.. + .....+.. + .--..++.+|++++...
T Consensus 191 ----------~q~~LL~~Le~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-------------- 244 (531)
T TIGR02902 191 ----------QMNKLLKVLEDRKVFLDS-A-YYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP-------------- 244 (531)
T ss_pred ----------HHHHHHHHHHhCeeeecc-c-cccccCcccccchhhhcccCcccceEEEEEecCCc--------------
Confidence 999999999854443321 1 00000000 0 00123455666554110
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
..+.|++++|+. .+.|++|+.+|+.+|++..++..
T Consensus 245 -----------------------------------~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~--------- 279 (531)
T TIGR02902 245 -----------------------------------EEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKI--------- 279 (531)
T ss_pred -----------------------------------ccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHc---------
Confidence 015588999985 68899999999999998643321
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
.+.+++++++.|+.++ + +.|++.++++.+...+..
T Consensus 280 ----~i~is~~al~~I~~y~--~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 280 ----GINLEKHALELIVKYA--S--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred ----CCCcCHHHHHHHHHhh--h--hHHHHHHHHHHHHHHHhh
Confidence 4789999999998854 4 469999999988765543
No 68
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.67 E-value=1e-15 Score=179.54 Aligned_cols=221 Identities=19% Similarity=0.311 Sum_probs=147.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|+..+.+.+.+.+.. +.....+|||+|++|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~~------------------------------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEM------------------------------VAQSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHHH------------------------------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 378888888877776641 01112689999999999999999998765
Q ss_pred CCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.||+.++|..+.+ ...+|...+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 57999999987742 1122221000 0000001123455677899999999999988 999999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
.+|+...+.- .+... .-..++.+|++++ .++++.+.++
T Consensus 492 ~~l~~~~~~~-------~g~~~---~~~~~~RiI~~t~-~~l~~~~~~~------------------------------- 529 (686)
T PRK15429 492 RVLQEQEFER-------LGSNK---IIQTDVRLIAATN-RDLKKMVADR------------------------------- 529 (686)
T ss_pred HHHHhCCEEe-------CCCCC---cccceEEEEEeCC-CCHHHHHHcC-------------------------------
Confidence 9998332210 01111 1123567777776 3444444333
Q ss_pred hhcCchHHHhcCCChhhhcccCe-EEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCcc-ccCHHHHHHHHHhcC
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAI 586 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l-~~s~eAl~~La~~a~ 586 (686)
.|.++|..|+.. .|.++||.+ +|+..+++..+.++.+++ +..+ .+++++++.|.. |
T Consensus 530 -----------~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~~s~~al~~L~~--y 589 (686)
T PRK15429 530 -----------EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNIDSIPAETLRTLSN--M 589 (686)
T ss_pred -----------cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHHh--C
Confidence 366777888754 588899885 678888877555544432 3344 599999999998 5
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 005637 587 SKNTGARGLRSLLENILMD 605 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~ 605 (686)
+|+++.|+|+++|++++..
T Consensus 590 ~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 590 EWPGNVRELENVIERAVLL 608 (686)
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 7777889999999999874
No 69
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.66 E-value=1e-15 Score=187.43 Aligned_cols=190 Identities=17% Similarity=0.243 Sum_probs=130.6
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccC---c------cc-------------------------
Q 005637 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAG---Y------VG------------------------- 373 (686)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sg---y------vG------------------------- 373 (686)
.++++|||+||||||||+|||++|..+++||+.++++++.+.. | +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 4568999999999999999999999999999999999987321 1 11
Q ss_pred ------ccHH-HHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCc
Q 005637 374 ------EDVE-SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGAR 446 (686)
Q Consensus 374 ------~~~~-~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~ 446 (686)
.+++ ..++.+|+.|+ +.+||||||||||.+.... +.+...+.||..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc--------
Confidence 1111 12566676664 3589999999999998651 122247889999984211
Q ss_pred cCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChh
Q 005637 447 KHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPE 526 (686)
Q Consensus 447 ~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PE 526 (686)
....++++||+|||..+ .+.|+
T Consensus 1767 --------~~s~~~VIVIAATNRPD--------------------------------------------------~LDPA 1788 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQ--------------------------------------------------KVDPA 1788 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcc--------------------------------------------------cCCHh
Confidence 11345789999988443 14477
Q ss_pred hh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 527 FV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 527 Ll--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
|+ +|||..|.+..++..+..+++.. + ....++.+.-+..-++.||+. +.++.++.|.+++..++.
T Consensus 1789 LLRPGRFDR~I~Ir~Pd~p~R~kiL~I----L-------l~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1789 LIAPNKLNTCIKIRRLLIPQQRKHFFT----L-------SYTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALTNEALS 1855 (2281)
T ss_pred HcCCCCCCeEEEeCCCCchhHHHHHHH----H-------HhhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHHHHHHH
Confidence 77 49999999988887776666542 1 011122222111125667764 677778999999988887
Q ss_pred HHHhc
Q 005637 605 DAMYE 609 (686)
Q Consensus 605 ~al~e 609 (686)
-++.+
T Consensus 1856 iAirq 1860 (2281)
T CHL00206 1856 ISITQ 1860 (2281)
T ss_pred HHHHc
Confidence 77765
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=6.5e-15 Score=158.29 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=138.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++||+++++.+..++.....+ ..++.++||+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR---------------------------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc---------------------------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 699999999999887522110 01236899999999999999999999999988
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
..+++..+... ..+..++... ..++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~~--------~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccCh--------HHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 77766544211 1222333221 34689999999999765 77788888985433
Q ss_pred ecC-CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 439 ~vp-~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
.+- .++. ..+.+......+.+|++++..+
T Consensus 132 ~~~l~~~~----~~~~~~~~l~~~~li~at~~~~---------------------------------------------- 161 (328)
T PRK00080 132 DIMIGKGP----AARSIRLDLPPFTLIGATTRAG---------------------------------------------- 161 (328)
T ss_pred eeeeccCc----cccceeecCCCceEEeecCCcc----------------------------------------------
Confidence 221 1110 0111222333466676665211
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.+++++|+..++.|.+++.+++.+|++..... ..+.++++++++|++.+ ....|-+.+
T Consensus 162 ----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~pR~a~~ 221 (328)
T PRK00080 162 ----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------------LGVEIDEEGALEIARRS---RGTPRIANR 221 (328)
T ss_pred ----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHHc---CCCchHHHH
Confidence 1457799999989999999999999999863322 16789999999999973 233488888
Q ss_pred HHHHHHHHHH
Q 005637 598 LLENILMDAM 607 (686)
Q Consensus 598 vIe~il~~al 607 (686)
+++++..-+.
T Consensus 222 ~l~~~~~~a~ 231 (328)
T PRK00080 222 LLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHH
Confidence 8887654443
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.4e-15 Score=167.95 Aligned_cols=185 Identities=24% Similarity=0.291 Sum_probs=129.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
|+||+.+++.|..++.... -+..+||+||||||||++|+++|+.++..
T Consensus 20 vVGQe~iv~~L~~~i~~~r-------------------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGK-------------------------------IGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred HhChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 7999999999998885110 01458999999999999999999998652
Q ss_pred -----------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
++.+++. ...|. ..++++..............|+||||+|.+...
T Consensus 69 ~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-----s~~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~---- 136 (484)
T PRK14956 69 PIGNEPCNECTSCLEITKGISSDVLEIDAA-----SNRGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ---- 136 (484)
T ss_pred ccCccccCCCcHHHHHHccCCccceeechh-----hcccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH----
Confidence 2233321 11222 223333332222112234569999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.+++||+.||. ...+++||++++..
T Consensus 137 ----------A~NALLKtLEE---------------------Pp~~viFILaTte~------------------------ 161 (484)
T PRK14956 137 ----------SFNALLKTLEE---------------------PPAHIVFILATTEF------------------------ 161 (484)
T ss_pred ----------HHHHHHHHhhc---------------------CCCceEEEeecCCh------------------------
Confidence 99999999982 12357888877621
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
..+.|.+++|.. ++.|.+++.+++.+.+++.+.. . .+.++
T Consensus 162 --------------------------~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~-----------E--gi~~e 201 (484)
T PRK14956 162 --------------------------HKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKI-----------E--NVQYD 201 (484)
T ss_pred --------------------------hhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 024577888886 7999999999998888753221 2 47899
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++..|++.+ +++.|..-++++.++.
T Consensus 202 ~eAL~~Ia~~S---~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 202 QEGLFWIAKKG---DGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHH
Confidence 99999999974 5668998888887653
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=6.2e-15 Score=155.92 Aligned_cols=200 Identities=24% Similarity=0.381 Sum_probs=132.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++||+++++.|..++.....+ + ..+.+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~---------------~------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR---------------Q------------EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc---------------C------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998877411110 0 0126899999999999999999999999887
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
...+++.+... +. +...+.. ...+.+||||||+.+... .++.|+.+|++...
T Consensus 59 ~~~~~~~~~~~-------~~-l~~~l~~------~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 59 KITSGPALEKP-------GD-LAAILTN------LEEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRL 110 (305)
T ss_pred EEeccchhcCc-------hh-HHHHHHh------cccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhhe
Confidence 76665543211 11 2222221 124579999999999876 78889999984433
Q ss_pred ecC-CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 439 ~vp-~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
.+. ..+ ...+........+++|.+++..
T Consensus 111 ~~v~~~~----~~~~~~~~~~~~~~li~~t~~~----------------------------------------------- 139 (305)
T TIGR00635 111 DIVIGKG----PSARSVRLDLPPFTLVGATTRA----------------------------------------------- 139 (305)
T ss_pred eeeeccC----ccccceeecCCCeEEEEecCCc-----------------------------------------------
Confidence 221 111 0011112233335555554421
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
..+.+++++|+..++.|.+++.+++.++++..+.. ..+.++++++++|++.+ ....|.+.+
T Consensus 140 ---~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------------~~~~~~~~al~~ia~~~---~G~pR~~~~ 200 (305)
T TIGR00635 140 ---GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------------LNVEIEPEAALEIARRS---RGTPRIANR 200 (305)
T ss_pred ---cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------------hCCCcCHHHHHHHHHHh---CCCcchHHH
Confidence 01457799999988999999999999999764321 15689999999999963 223477777
Q ss_pred HHHHHH
Q 005637 598 LLENIL 603 (686)
Q Consensus 598 vIe~il 603 (686)
+++.+.
T Consensus 201 ll~~~~ 206 (305)
T TIGR00635 201 LLRRVR 206 (305)
T ss_pred HHHHHH
Confidence 777654
No 73
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-15 Score=154.64 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=151.4
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
..|-|+.+.++.+.+.|..+......... . +. -||.++||+||||||||++||++|+..+.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~----l---gi------------dppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVN----L---GI------------DPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhh----c---CC------------CCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 34889999999999999866553322211 0 00 13589999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
.|+++-.++++ ..|+|+. ..+++++|+.++. ..-||||+||||.+...|-..+.++| +++|..+|+++..
T Consensus 238 cfirvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggd---nevqrtmleli~q- 307 (435)
T KOG0729|consen 238 CFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELINQ- 307 (435)
T ss_pred eEEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHHh-
Confidence 99999999999 5799998 7899999998875 35699999999999988766555555 4588888888751
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
-+| ++++| |+-+++++|-.+
T Consensus 308 -----ldg--fdprg--------nikvlmatnrpd--------------------------------------------- 327 (435)
T KOG0729|consen 308 -----LDG--FDPRG--------NIKVLMATNRPD--------------------------------------------- 327 (435)
T ss_pred -----ccC--CCCCC--------CeEEEeecCCCC---------------------------------------------
Confidence 011 34444 577778877432
Q ss_pred HHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH-HHHHHhcCCCCCChh
Q 005637 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL-RLIAKKAISKNTGAR 593 (686)
Q Consensus 517 dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl-~~La~~a~~~~~GAR 593 (686)
.+.|.|+ +|+|..|.|.-.+.+-...|++.+.. .+.++.+.. ++|+.. ++..+| -
T Consensus 328 -----tldpallrpgrldrkvef~lpdlegrt~i~kihak---------------smsverdir~ellarl-cpnstg-a 385 (435)
T KOG0729|consen 328 -----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK---------------SMSVERDIRFELLARL-CPNSTG-A 385 (435)
T ss_pred -----CcCHhhcCCcccccceeccCCcccccceeEEEecc---------------ccccccchhHHHHHhh-CCCCcc-h
Confidence 0223333 68888888887777777777765322 333444433 445554 555566 4
Q ss_pred HHHHHHHHH
Q 005637 594 GLRSLLENI 602 (686)
Q Consensus 594 ~Lr~vIe~i 602 (686)
+||+++-..
T Consensus 386 eirsvctea 394 (435)
T KOG0729|consen 386 EIRSVCTEA 394 (435)
T ss_pred HHHHHHHHh
Confidence 777776543
No 74
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.64 E-value=4.4e-15 Score=166.22 Aligned_cols=262 Identities=16% Similarity=0.218 Sum_probs=163.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhh-----------cchhhHhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ve~a~~ 396 (686)
.++++.|++|||||++|+++.... +.||+.++|+.+.+ ...-..+|.. ..+.++.+.+
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~--------~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK--------DLIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH--------HHHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 689999999999999999998876 46999999988742 1112222221 1234566788
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
|+||||||+.++.. +|..|+++++...+ .+ +....+ ..++.+|+|++ .++++.
T Consensus 234 Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~--------~~~~~~---~~~~rii~~~~-~~l~~~ 287 (469)
T PRK10923 234 GTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRV--------GGYAPV---KVDVRIIAATH-QNLEQR 287 (469)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeC--------CCCCeE---EeeEEEEEeCC-CCHHHH
Confidence 99999999999988 99999999983322 21 111111 23577787776 344444
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc-CeEEEccCcCh--HHHHHHHhhh
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTE--NQLVQVLTEP 552 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~--eeL~~IL~~~ 552 (686)
+.++ .|.++|..|+ ...|.++||.+ +|+..++..+
T Consensus 288 ~~~~------------------------------------------~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~ 325 (469)
T PRK10923 288 VQEG------------------------------------------KFREDLFHRLNVIRVHLPPLRERREDIPRLARHF 325 (469)
T ss_pred HHcC------------------------------------------CchHHHHHHhcceeecCCCcccchhhHHHHHHHH
Confidence 4332 3668888888 46788899886 7888888876
Q ss_pred HHHHHHHHHHHHhhcCCc-cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEE-ch-hc
Q 005637 553 KNALGKQYRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVV-DE-EA 629 (686)
Q Consensus 553 l~~L~kq~~~~~~~~gv~-l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlV-de-e~ 629 (686)
++++.+++ +.. ..++++|++.|.. |+|.++.|+|+++|++++..+-....... .+...+. .. ..
T Consensus 326 l~~~~~~~-------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~~~~~~i~~~----~l~~~~~~~~~~~ 392 (469)
T PRK10923 326 LQVAAREL-------GVEAKLLHPETEAALTR--LAWPGNVRQLENTCRWLTVMAAGQEVLIQ----DLPGELFESTVPE 392 (469)
T ss_pred HHHHHHHc-------CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCCcccHH----HCcHhhhcccccc
Confidence 55543322 323 4699999999999 56777779999999998875422111110 0100000 00 00
Q ss_pred cc-cccCCC--c-ceE-----E--cCCChHHHHHHHHhhhhh-hhhhhccCCCCCCCcccCccc
Q 005637 630 VG-SEDRGC--G-AKI-----L--YGKGALDRYLAQHKRKDL-ELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 630 v~-~~~~g~--~-~~i-----~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 681 (686)
.. ...+.. . +.. . .....+...++++|++.+ +.+...+|...+++..++||.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr 456 (469)
T PRK10923 393 STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGR 456 (469)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 00 000000 0 000 0 001234456677777654 455677888888899999874
No 75
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.7e-16 Score=159.87 Aligned_cols=178 Identities=25% Similarity=0.381 Sum_probs=134.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHH--hhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~--~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.|-|++..++.++++|..+.-.. +.... -.||.+|+|||+||||||+||+|+|+...
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemG---------------------ikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMG---------------------IKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcC---------------------CCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 47999999999999997444321 11111 12458999999999999999999999999
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
..|+++-.+++. ..|.|.. -++++++|+.+.. ..++|+||||||.+..+|-..+.++. +++|..+|++|..
T Consensus 245 ATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLNQ 315 (440)
T KOG0726|consen 245 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLNQ 315 (440)
T ss_pred hhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHHh
Confidence 999999999998 5799998 6899999998764 58999999999999999877654443 4589998888861
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (686)
-+| ++.++ .+-+|+++|-.+
T Consensus 316 ------ldG--Fdsrg--------DvKvimATnrie-------------------------------------------- 335 (440)
T KOG0726|consen 316 ------LDG--FDSRG--------DVKVIMATNRIE-------------------------------------------- 335 (440)
T ss_pred ------ccC--ccccC--------CeEEEEeccccc--------------------------------------------
Confidence 011 22233 377788887321
Q ss_pred hHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhh
Q 005637 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 516 ~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+.|.|+ +|+|.-|.|+-.++....+|+..
T Consensus 336 ------~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 336 ------TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred ------ccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 1334444 58888888888888888877764
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.3e-15 Score=165.71 Aligned_cols=185 Identities=27% Similarity=0.438 Sum_probs=127.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
|+||+++++.|..++..+. .+..+||+||||||||++|+++|+.++.
T Consensus 16 ivGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~ 64 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCEN 64 (472)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 7999999999888775110 1256899999999999999999998754
Q ss_pred ----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
.++.++++. ..|. +.++.+..........+...||||||+|.+...
T Consensus 65 ~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---- 132 (472)
T PRK14962 65 RKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---- 132 (472)
T ss_pred CCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH----
Confidence 244454432 1222 223343333222112245679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.++.||+.||. ...+++||++++.. +
T Consensus 133 ----------a~~~LLk~LE~---------------------p~~~vv~Ilattn~--~--------------------- 158 (472)
T PRK14962 133 ----------AFNALLKTLEE---------------------PPSHVVFVLATTNL--E--------------------- 158 (472)
T ss_pred ----------HHHHHHHHHHh---------------------CCCcEEEEEEeCCh--H---------------------
Confidence 89999999982 11236666655411 0
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
.+.+.+++|+. ++.|.+++.+++..+++..+.. . .+.++
T Consensus 159 ---------------------------kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~-----------e--gi~i~ 197 (472)
T PRK14962 159 ---------------------------KVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEA-----------E--GIEID 197 (472)
T ss_pred ---------------------------hhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 13366888885 8999999999999888753221 1 56899
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++|+++|++.+ +.++|.+-+.++.++.
T Consensus 198 ~eal~~Ia~~s---~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 198 REALSFIAKRA---SGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 99999999963 5678988888887553
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.62 E-value=7.2e-15 Score=162.88 Aligned_cols=166 Identities=29% Similarity=0.433 Sum_probs=118.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++.++.............||||||||++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999999886431 1223333333221111235689999999999876
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
.|+.|+..||. + .+++|.+++...
T Consensus 108 --------------~q~~LL~~le~--------~---------------~iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVED--------G---------------TITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhc--------C---------------cEEEEEeCCCCh-------------------
Confidence 89999999982 1 134454433100
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
...+.|.+++|+ .++.|.+++.+++.+++.+.+... . .++
T Consensus 132 -----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~----~-----~~~- 171 (413)
T PRK13342 132 -----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK----E-----RGL- 171 (413)
T ss_pred -----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh----h-----cCC-
Confidence 001457899999 589999999999999988643222 1 122
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.+++++++.|++.+ +++.|.+.++++.++.
T Consensus 172 i~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 172 VELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 479999999999963 5668999999998754
No 78
>PRK15115 response regulator GlrR; Provisional
Probab=99.62 E-value=6.9e-15 Score=163.44 Aligned_cols=249 Identities=17% Similarity=0.211 Sum_probs=158.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhh-----------cchhhHhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ve~a~~ 396 (686)
.++++.|++|||||++|+++.+.. +.||+.++|..+.+ ...-..+|.. ..+.++.+.+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~--------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE--------QLLESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH--------HHHHHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 689999999999999999998775 47999999988742 1111122221 1234567788
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHH
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i 476 (686)
|+|||||||.|+.. +|..|+++|+...+. ..+... ....++.+|++++ .++++.+
T Consensus 230 gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~-------~~g~~~---~~~~~~rii~~~~-~~l~~~~ 284 (444)
T PRK15115 230 GTLFLDEIGDMPAP--------------LQVKLLRVLQERKVR-------PLGSNR---DIDIDVRIISATH-RDLPKAM 284 (444)
T ss_pred CEEEEEccccCCHH--------------HHHHHHHHHhhCCEE-------eCCCCc---eeeeeEEEEEeCC-CCHHHHH
Confidence 99999999999998 999999999833221 001111 1123578888776 3466666
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhH
Q 005637 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPK 553 (686)
Q Consensus 477 ~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l 553 (686)
.++. |.++|..|+. ..|.++||.+ +|+..++...+
T Consensus 285 ~~~~------------------------------------------f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l 322 (444)
T PRK15115 285 ARGE------------------------------------------FREDLYYRLNVVSLKIPALAERTEDIPLLANHLL 322 (444)
T ss_pred HcCC------------------------------------------ccHHHHHhhceeeecCCChHhccccHHHHHHHHH
Confidence 5543 4455666663 3466777765 67888887765
Q ss_pred HHHHHHHHHHHhhcCCc-cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccc
Q 005637 554 NALGKQYRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (686)
Q Consensus 554 ~~L~kq~~~~~~~~gv~-l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~ 632 (686)
.++.+++ +.. ..++++|++.|.. |+|+++.|+|+++|++++..+-.. .|+.+.+..
T Consensus 323 ~~~~~~~-------~~~~~~~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~~~~~~--------------~i~~~~l~~ 379 (444)
T PRK15115 323 RQAAERH-------KPFVRAFSTDAMKRLMT--ASWPGNVRQLVNVIEQCVALTSSP--------------VISDALVEQ 379 (444)
T ss_pred HHHHHHh-------CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCC--------------ccChhhhhh
Confidence 5543332 223 3699999999999 567777899999999987642111 122222211
Q ss_pred ccCCCcceEEcCCChHHHHHHHHhhhh-hhhhhhccCCCCCCCcccCccc
Q 005637 633 EDRGCGAKILYGKGALDRYLAQHKRKD-LELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 633 ~~~g~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 681 (686)
...+ .. .....+...+++.|++. .+.+...+|...+.+..++||.
T Consensus 380 ~~~~-~~---~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lgisr 425 (444)
T PRK15115 380 ALEG-EN---TALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNR 425 (444)
T ss_pred hhcc-cc---cccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 0000 00 00113444456666554 4455666788888888888874
No 79
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.62 E-value=1.2e-14 Score=169.33 Aligned_cols=229 Identities=22% Similarity=0.270 Sum_probs=156.7
Q ss_pred hHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHH
Q 005637 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (686)
Q Consensus 268 ~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LA 347 (686)
+..+...+++ +.|.+.+++.+.+.+.. .+...... . . ... .+.++||+||||||||++|
T Consensus 144 ~~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~~~~~~--~--~--------------~~~-~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 144 EDQIKTTFAD-VAGCDEAKEEVAELVEY-LREPSRFQ--K--L--------------GGK-IPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred chhhhCcHHH-HcCHHHHHHHHHHHHHH-hhCHHHHH--h--c--------------CCC-CCCcEEEECCCCCCHHHHH
Confidence 3344445554 68999999999988752 11100000 0 0 001 1367999999999999999
Q ss_pred HHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHH
Q 005637 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (686)
Q Consensus 348 raLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (686)
+++|+.++.||+.++++++. ..|+|.. ...++.+|..+. ...|+||||||||.+...++.+..+.+...+.+.+
T Consensus 203 ~~~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 203 KAIAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred HHHHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 99999999999999999887 4577776 466777777653 34789999999999998776544455556667899
Q ss_pred HHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHH
Q 005637 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (686)
Q Consensus 428 ~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~ 507 (686)
.||..|||.. ....+++|+|+|..+
T Consensus 277 ~lL~~mdg~~-------------------~~~~vivIaaTN~p~------------------------------------ 301 (644)
T PRK10733 277 QMLVEMDGFE-------------------GNEGIIVIAATNRPD------------------------------------ 301 (644)
T ss_pred HHHHhhhccc-------------------CCCCeeEEEecCChh------------------------------------
Confidence 9999998421 123588888888432
Q ss_pred HHHhhcCchHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhc
Q 005637 508 SLMETVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (686)
Q Consensus 508 ~ll~~v~~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a 585 (686)
.+.|.++ +|||..+.++.++.++..+|++..+..+ .....++ +..+++.
T Consensus 302 --------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----------~l~~~~d---~~~la~~- 352 (644)
T PRK10733 302 --------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDID---AAIIARG- 352 (644)
T ss_pred --------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----------CCCCcCC---HHHHHhh-
Confidence 1234555 5999999999999999999987632221 1111122 3345553
Q ss_pred CCCCCChhHHHHHHHHHHHHHHh
Q 005637 586 ISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 586 ~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
..++..+.|.+++......+..
T Consensus 353 -t~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 353 -TPGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHH
Confidence 4566678888888877666554
No 80
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.7e-15 Score=154.94 Aligned_cols=176 Identities=23% Similarity=0.357 Sum_probs=133.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccc-ccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~-~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.|-|.+..++.|.++|..+..+..... ++. .||.++|+|||||||||.+||+.|...+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~--------------------~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFE--------------------NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHH--------------------hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 479999999999999975544322111 111 24589999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh--
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 434 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-- 434 (686)
.|..+-+..+++ -|+|.. .+++++.|..+.. ..|+||||||+|.+..+|-.+.-.+| +++|..+|++|.
T Consensus 232 TFLKLAgPQLVQ-MfIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLNQL 302 (424)
T KOG0652|consen 232 TFLKLAGPQLVQ-MFIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLNQL 302 (424)
T ss_pred hHHHhcchHHHh-hhhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHHhh
Confidence 999988888884 589988 7889999987754 57899999999999998765443344 458888888775
Q ss_pred -CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhc
Q 005637 435 -GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (686)
Q Consensus 435 -g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (686)
|.. ....+-+|+++|-.++
T Consensus 303 DGFs-------------------s~~~vKviAATNRvDi----------------------------------------- 322 (424)
T KOG0652|consen 303 DGFS-------------------SDDRVKVIAATNRVDI----------------------------------------- 322 (424)
T ss_pred cCCC-------------------CccceEEEeecccccc-----------------------------------------
Confidence 321 1234667778774331
Q ss_pred CchHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhh
Q 005637 514 ESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 514 ~~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
+.|.|+ +|+|.-|.|+..+++...+|++.
T Consensus 323 ---------LDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 323 ---------LDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred ---------cCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 335554 69999999999999999999875
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=2.3e-15 Score=159.67 Aligned_cols=214 Identities=23% Similarity=0.337 Sum_probs=144.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC---EEEEecccccccCcccccHHHHHHHHHhhcc-hhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSD-YNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~-~~ve~a~~gILfIDEIDk 406 (686)
..++||||||||||+|||.|+.....+ |+.++++.-. -.-++++|+.+. .........|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 579999999999999999999888766 8888886543 133555555442 223345678999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
+.+. .|+.||..+| +| .|++|-+++-.
T Consensus 234 FNks--------------QQD~fLP~VE--------~G---------------~I~lIGATTEN---------------- 260 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVE--------NG---------------DITLIGATTEN---------------- 260 (554)
T ss_pred hhhh--------------hhhcccceec--------cC---------------ceEEEecccCC----------------
Confidence 9987 8999999998 22 25566554400
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhh
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~ 566 (686)
| .+.+..+|++|.. ++.+.+|..+++..||.+.++.|.+.-+..-..
T Consensus 261 ---P-----------------------------SFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 261 ---P-----------------------------SFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred ---C-----------------------------ccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 0 1224466888887 788999999999999998777665321110011
Q ss_pred cCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhccccccCCCcceEEcCCC
Q 005637 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKG 646 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~~g~~~~i~~~~~ 646 (686)
.+..+.+++.++++|+..+ .+.||---|.+|-.+.....+..+ -+.++++.+.++...+ ...++++..
T Consensus 308 ~n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~m~~tr~g~-------~~~~~lSidDvke~lq--~s~~~YDr~ 375 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLSMFCTRSGQ-------SSRVLLSIDDVKEGLQ--RSHILYDRA 375 (554)
T ss_pred CCcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhhcCC-------cccceecHHHHHHHHh--hccceeccc
Confidence 2334578999999999863 456888888888765544433222 2456677777665442 223667666
Q ss_pred hHHHH
Q 005637 647 ALDRY 651 (686)
Q Consensus 647 ~l~~~ 651 (686)
.-++|
T Consensus 376 Ge~HY 380 (554)
T KOG2028|consen 376 GEEHY 380 (554)
T ss_pred chhHH
Confidence 66666
No 82
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8.8e-15 Score=169.21 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=128.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+++++.|..++.... ....+||+||+|||||++|++||+.++..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-------------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-------------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999998875110 02457999999999999999999988642
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+|..+ ..|. ..+++++....+........|+||||+|.|...
T Consensus 66 ~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rgV---DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--- 134 (830)
T PRK07003 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRGV---DEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--- 134 (830)
T ss_pred cCCCCCCCcccHHHHHHhcCCCceEEEecccc-----cccH---HHHHHHHHHHHhccccCCceEEEEeChhhCCHH---
Confidence 23333321 1121 224444443322222345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.||+.||. ...+++||++++...
T Consensus 135 -----------A~NALLKtLEE---------------------PP~~v~FILaTtd~~---------------------- 160 (830)
T PRK07003 135 -----------AFNAMLKTLEE---------------------PPPHVKFILATTDPQ---------------------- 160 (830)
T ss_pred -----------HHHHHHHHHHh---------------------cCCCeEEEEEECChh----------------------
Confidence 89999999992 233578888776211
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|+- .+.|.+++.+++.++|++.+.. + .+.+
T Consensus 161 ----------------------------KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~-----------E--gI~i 198 (830)
T PRK07003 161 ----------------------------KIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGE-----------E--RIAF 198 (830)
T ss_pred ----------------------------hccchhhhheE-EEecCCcCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 14467888884 8999999999999988763322 1 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|++.+ .+..|...++++..+
T Consensus 199 d~eAL~lIA~~A---~GsmRdALsLLdQAi 225 (830)
T PRK07003 199 EPQALRLLARAA---QGSMRDALSLTDQAI 225 (830)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999973 444687777776655
No 83
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.61 E-value=1.3e-14 Score=161.63 Aligned_cols=258 Identities=15% Similarity=0.218 Sum_probs=161.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhh-----------cchhhHhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ve~a~~ 396 (686)
.++|+.|++||||+++|+++.... +.||+.++|..+.+ ...-..+|.. ..+.++.+.+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~--------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE--------SLLESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH--------HHHHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 689999999999999999997654 57999999988742 1111222221 1234556788
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHH
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i 476 (686)
|+||||||+.++.. +|..|+.+++...+. ..+....+ ..++.+|++++ .++++.+
T Consensus 239 gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~-------~~~~~~~~---~~~~rii~~t~-~~l~~~~ 293 (457)
T PRK11361 239 GTLLLDEIGEMPLV--------------LQAKLLRILQEREFE-------RIGGHQTI---KVDIRIIAATN-RDLQAMV 293 (457)
T ss_pred CEEEEechhhCCHH--------------HHHHHHHHHhcCcEE-------eCCCCcee---eeceEEEEeCC-CCHHHHH
Confidence 99999999999988 999999999843321 01111111 23567777776 4555555
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc-CeEEEccCcCh--HHHHHHHhhhH
Q 005637 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTE--NQLVQVLTEPK 553 (686)
Q Consensus 477 ~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~--eeL~~IL~~~l 553 (686)
.++. |.+++..|+ ...|.++||.+ +|+..++...+
T Consensus 294 ~~g~------------------------------------------~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l 331 (457)
T PRK11361 294 KEGT------------------------------------------FREDLFYRLNVIHLILPPLRDRREDISLLANHFL 331 (457)
T ss_pred HcCC------------------------------------------chHHHHHHhccceecCCChhhchhhHHHHHHHHH
Confidence 5443 455666666 34577788874 77777777655
Q ss_pred HHHHHHHHHHHhhcCC-ccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccc
Q 005637 554 NALGKQYRKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (686)
Q Consensus 554 ~~L~kq~~~~~~~~gv-~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~ 632 (686)
.++..++ +. ...++++|++.|.. |+|..+.|+|+++|++++..+-....... .+...+. ..
T Consensus 332 ~~~~~~~-------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~~~~~~~i~~~----~l~~~~~-----~~ 393 (457)
T PRK11361 332 QKFSSEN-------QRDIIDIDPMAMSLLTA--WSWPGNIRELSNVIERAVVMNSGPIIFSE----DLPPQIR-----QP 393 (457)
T ss_pred HHHHHHc-------CCCCCCcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHhCCCCcccHH----HChHhhh-----cc
Confidence 5543322 22 35799999999999 57777889999999998764311111100 0110000 00
Q ss_pred ccCCCcc-eEEcCCChHHHHHHHHhhhhhh-hhhhccCCCCCCCcccCccc
Q 005637 633 EDRGCGA-KILYGKGALDRYLAQHKRKDLE-LQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 633 ~~~g~~~-~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 681 (686)
....... ........+..++++++++.++ .+...+|...+++..++||.
T Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~~LGisr 444 (457)
T PRK11361 394 VCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISR 444 (457)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCH
Confidence 0000000 0000112456677888776544 44566788888898999874
No 84
>PLN03025 replication factor C subunit; Provisional
Probab=99.61 E-value=8.1e-15 Score=157.02 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=121.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
++||+++++.|..++... ...++||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 689999999888776410 0157999999999999999999998732
Q ss_pred ---CEEEEecccccccCcccccHHHHHHHHH---hhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 357 ---PFVIADATTLTQAGYVGEDVESILYKLL---TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~~~~~l~~l~---~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
.++.+++++. .|.+ .++... .............|++|||+|.+... .|++|+
T Consensus 63 ~~~~~~eln~sd~-----~~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~ 120 (319)
T PLN03025 63 YKEAVLELNASDD-----RGID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALR 120 (319)
T ss_pred Cccceeeeccccc-----ccHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHH
Confidence 3555555432 2222 222222 11111111124579999999999877 899999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
+.||. ...++.||+++|...
T Consensus 121 ~~lE~---------------------~~~~t~~il~~n~~~--------------------------------------- 140 (319)
T PLN03025 121 RTMEI---------------------YSNTTRFALACNTSS--------------------------------------- 140 (319)
T ss_pred HHHhc---------------------ccCCceEEEEeCCcc---------------------------------------
Confidence 99981 011233555554210
Q ss_pred hhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCC
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~ 590 (686)
.+.|++++|.. ++.|.+++.+++.+++...+.. . .+.++++++++|++.+ +.
T Consensus 141 -----------~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~-----------e--gi~i~~~~l~~i~~~~---~g 192 (319)
T PLN03025 141 -----------KIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEA-----------E--KVPYVPEGLEAIIFTA---DG 192 (319)
T ss_pred -----------ccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CC
Confidence 13467888875 7999999999999888753221 1 5678999999999963 45
Q ss_pred ChhHHHHHHHH
Q 005637 591 GARGLRSLLEN 601 (686)
Q Consensus 591 GAR~Lr~vIe~ 601 (686)
+.|.+-+.+|.
T Consensus 193 DlR~aln~Lq~ 203 (319)
T PLN03025 193 DMRQALNNLQA 203 (319)
T ss_pred CHHHHHHHHHH
Confidence 56888888873
No 85
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.59 E-value=4.5e-15 Score=145.52 Aligned_cols=148 Identities=24% Similarity=0.420 Sum_probs=103.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|.+.+.+.+.+.+. + +...+.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~----~--------------------------~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAK----R--------------------------AASSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHH----H--------------------------HTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHH----H--------------------------HhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 5788888888888775 1 11123799999999999999999998876 4
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhh-----------cchhhHhhcCcEEEEccccccchhccccccCCCCchHH
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (686)
.||+.+||+.+.+ +..-.++|.. ..+.++.+.+|+||||||+.|++.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 6999999988742 2333455543 236788899999999999999998
Q ss_pred HHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 425 VQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 425 vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
+|..|+++|+ +....+ +..+.+ ..++.+|++++ .+|++.+.++.|+.+++|...
T Consensus 109 ~Q~~Ll~~l~~~~~~~~--------g~~~~~---~~~~RiI~st~-~~l~~~v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTRL--------GSDKPV---PVDVRIIASTS-KDLEELVEQGRFREDLYYRLN 163 (168)
T ss_dssp HHHHHHHHHHHSEEECC--------TSSSEE---E--EEEEEEES-S-HHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHHHhhchhccc--------cccccc---cccceEEeecC-cCHHHHHHcCCChHHHHHHhc
Confidence 9999999998 333322 111222 24688888777 589999999999888887544
No 86
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2e-14 Score=164.79 Aligned_cols=186 Identities=23% Similarity=0.286 Sum_probs=130.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.+++.|..++.... .+..+||+||+|||||++|+++|+.++.
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-------------------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-------------------------------LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998885110 1257899999999999999999999864
Q ss_pred -----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 357 -----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
.++.+++++ ..+ -..++++.....+....+...|++|||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-----~~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--- 133 (702)
T PRK14960 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-----RTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--- 133 (702)
T ss_pred cCCCCCCCccCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---
Confidence 234444322 112 1234555544433323345679999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...++.||++++.. .
T Consensus 134 -----------A~NALLKtLEE---------------------PP~~v~FILaTtd~--~-------------------- 159 (702)
T PRK14960 134 -----------SFNALLKTLEE---------------------PPEHVKFLFATTDP--Q-------------------- 159 (702)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCcEEEEEECCh--H--------------------
Confidence 89999999982 11235666665411 0
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|.. ++.|.+++.+++.+.+...++. . .+.+
T Consensus 160 ----------------------------kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~k-----------E--gI~i 197 (702)
T PRK14960 160 ----------------------------KLPITVISRCL-QFTLRPLAVDEITKHLGAILEK-----------E--QIAA 197 (702)
T ss_pred ----------------------------hhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 12345677775 7999999999999988763322 1 5789
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++..|++.+ +++.|.+.+.++.++.
T Consensus 198 d~eAL~~IA~~S---~GdLRdALnLLDQaIa 225 (702)
T PRK14960 198 DQDAIWQIAESA---QGSLRDALSLTDQAIA 225 (702)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999974 5567888888876653
No 87
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.59 E-value=4.1e-15 Score=167.80 Aligned_cols=199 Identities=21% Similarity=0.330 Sum_probs=144.4
Q ss_pred cccCceEEEEccCCChHHHHHHHHHHhc--CCCEEEEeccccc----ccCcccccHHHHHHHHHhhcchhhHhhcCcEEE
Q 005637 327 ELEKSNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (686)
Q Consensus 327 ~~~~~~vLL~GPPGTGKT~LAraLA~~l--~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILf 400 (686)
.....++|+.|+|||||..+||++.+.. ..||+.++|..+. ++.++|+..+......-+.-.+.++.+.+|++|
T Consensus 333 ~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 3445799999999999999999996554 5799999999874 467888876655544445556678889999999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhc
Q 005637 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (686)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r 479 (686)
+|||..++-. +|..||++|+ |.++.| .+..+.|| |-+|++++ .||...+.++
T Consensus 413 ldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~---------g~~~~~vd---irvi~ath-~dl~~lv~~g 465 (606)
T COG3284 413 LDEIGDMPLA--------------LQSRLLRVLQEGVVTPL---------GGTRIKVD---IRVIAATH-RDLAQLVEQG 465 (606)
T ss_pred HHHhhhchHH--------------HHHHHHHHHhhCceecc---------CCcceeEE---EEEEeccC-cCHHHHHHcC
Confidence 9999999988 9999999997 544443 22225677 56666654 7999999999
Q ss_pred cccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHH
Q 005637 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (686)
Q Consensus 480 ~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq 559 (686)
+|+.+++|+.+.-.. -.|+|+.|=|.+ ..+.+|+.+
T Consensus 466 ~fredLyyrL~~~~i----------------------------~lP~lr~R~d~~--------~~l~~~~~~-------- 501 (606)
T COG3284 466 RFREDLYYRLNAFVI----------------------------TLPPLRERSDRI--------PLLDRILKR-------- 501 (606)
T ss_pred CchHHHHHHhcCeee----------------------------ccCchhcccccH--------HHHHHHHHH--------
Confidence 999888886654211 114444444321 122222221
Q ss_pred HHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 560 ~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.....+.++++++..|.. |.|+++.|+|+++|+.+..
T Consensus 502 ------~~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 502 ------ENDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLAA 538 (606)
T ss_pred ------ccCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 122478999999999998 5677777999999998765
No 88
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.59 E-value=9.2e-15 Score=163.13 Aligned_cols=269 Identities=18% Similarity=0.245 Sum_probs=164.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.++++.|++||||+++|+++.+.. +.||+.+||..+.+ +..+|...+ .+........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG-AFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCC-CCCCcccCCCCcEEECCCCeEEEEc
Confidence 689999999999999999998775 56999999988742 111121100 0000011112335567789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccC
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
|+.++.. +|..|+++|+...+. ..+....+. .++.+|++++ .++++.+.++
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~-------~~~~~~~~~---~~~rii~~~~-~~l~~~~~~~---- 287 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFY-------RVGGRTPIK---VDVRIVAATH-QNLEALVRQG---- 287 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------ECCCCceee---eeeEEEEeCC-CCHHHHHHcC----
Confidence 9999988 999999999832221 001111122 2466777765 3454444432
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcC--hHHHHHHHhhhHHHHHHHH
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALT--ENQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs--~eeL~~IL~~~l~~L~kq~ 560 (686)
.|.++|..|+. ..|.++||. .+|+..++...+.++.+++
T Consensus 288 --------------------------------------~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 329 (463)
T TIGR01818 288 --------------------------------------KFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL 329 (463)
T ss_pred --------------------------------------CcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 36677888886 479999999 6899999888666554432
Q ss_pred HHHHhhcCC-ccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEE-EchhccccccCCCc
Q 005637 561 RKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVV-VDEEAVGSEDRGCG 638 (686)
Q Consensus 561 ~~~~~~~gv-~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vl-Vdee~v~~~~~g~~ 638 (686)
+. ...++++|++.|..+ +|.++.|+|++++++++..+-....... .+...+ ..... ........
T Consensus 330 -------~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~~~~~i~~~----~l~~~~~~~~~~-~~~~~~~~ 395 (463)
T TIGR01818 330 -------DVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMASGDEVLVS----DLPAELALTGRP-ASAPDSDG 395 (463)
T ss_pred -------CCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhCCCCcccHH----hchHHHhccccc-cccccccc
Confidence 22 247999999999995 6777789999999998875432211110 010000 00000 00000000
Q ss_pred c-----eE-------Ec--CCChHHHHHHHHhhhhh-hhhhhccCCCCCCCcccCccc
Q 005637 639 A-----KI-------LY--GKGALDRYLAQHKRKDL-ELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 639 ~-----~i-------~~--~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 681 (686)
. .+ +. ....+...++++|++.+ +.+...+|...+++..++||.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn~~~aA~~Lgisr 453 (463)
T TIGR01818 396 QDSWDEALEAWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGR 453 (463)
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 0 00 00 11245556677777644 456778899999999999984
No 89
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-14 Score=159.44 Aligned_cols=221 Identities=24% Similarity=0.313 Sum_probs=159.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.+.|++.+|+.+.+++..+..|.......| -+...+||.||||+|||.|++++|.+.+..
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr--------------------~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLR--------------------EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccc--------------------cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 488999999999999987766544433322 234799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++.++ +.|+|+. +..++.+|..|+. .+++|+||||||++..+|.. ..+...+.....+|-.++|..
T Consensus 214 ff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 214 FFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred EeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhcccc
Confidence 9999999999 7899999 8999999998875 58999999999999998732 333444446666666665322
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~-Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. . ...++++|.|+|... +|
T Consensus 285 s---------~--------~~drvlvigaTN~P~e~D------------------------------------------- 304 (428)
T KOG0740|consen 285 S---------A--------PDDRVLVIGATNRPWELD------------------------------------------- 304 (428)
T ss_pred C---------C--------CCCeEEEEecCCCchHHH-------------------------------------------
Confidence 1 0 112688888887431 11
Q ss_pred HHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 517 dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
..++.||.-++.++..+.+....++.. +..+ . .-.+++..+..|++. ..+++.-.+.
T Consensus 305 --------ea~~Rrf~kr~yiplPd~etr~~~~~~----ll~~-------~--~~~l~~~d~~~l~~~--Tegysgsdi~ 361 (428)
T KOG0740|consen 305 --------EAARRRFVKRLYIPLPDYETRSLLWKQ----LLKE-------Q--PNGLSDLDISLLAKV--TEGYSGSDIT 361 (428)
T ss_pred --------HHHHHHhhceeeecCCCHHHHHHHHHH----HHHh-------C--CCCccHHHHHHHHHH--hcCcccccHH
Confidence 223446766777788888887777765 2222 1 345677888888884 5566656777
Q ss_pred HHHHHHHHHHHhcC
Q 005637 597 SLLENILMDAMYEI 610 (686)
Q Consensus 597 ~vIe~il~~al~e~ 610 (686)
.++..+......+.
T Consensus 362 ~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 362 ALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHhhcCchhhc
Confidence 77776655444443
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=2e-14 Score=168.64 Aligned_cols=170 Identities=26% Similarity=0.347 Sum_probs=118.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhH-hhcCcEEEEccccccch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve-~a~~gILfIDEIDkl~~ 409 (686)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..++..+........ .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999988875321 1 112222222111111 12457999999999987
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCc
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~ 489 (686)
. .|+.|++.+|. | .+++|++++....
T Consensus 124 ~--------------qQdaLL~~lE~--------g---------------~IiLI~aTTenp~----------------- 149 (725)
T PRK13341 124 A--------------QQDALLPWVEN--------G---------------TITLIGATTENPY----------------- 149 (725)
T ss_pred H--------------HHHHHHHHhcC--------c---------------eEEEEEecCCChH-----------------
Confidence 6 89999999982 1 2455655431100
Q ss_pred ccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCC
Q 005637 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (686)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv 569 (686)
..+.+.+++|.. ++.|++++.+++.+|++..+....+.+. ..
T Consensus 150 -------------------------------~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g------~~ 191 (725)
T PRK13341 150 -------------------------------FEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYG------DR 191 (725)
T ss_pred -------------------------------hhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcC------Cc
Confidence 013366788854 7999999999999999875544322211 12
Q ss_pred ccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.+.++++++++|++.+ .+++|.+.++++.++.
T Consensus 192 ~v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred ccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 5789999999999974 6679999999998764
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.4e-14 Score=165.62 Aligned_cols=185 Identities=26% Similarity=0.349 Sum_probs=126.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+++++.|..++..... +..+||+||+|||||++|+.||+.++.
T Consensus 17 dVIGQe~vv~~L~~al~~gRL-------------------------------pHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL-------------------------------HHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 479999999999988852110 246799999999999999999999865
Q ss_pred ----------------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 357 ----------------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
.++.+|.. ...|. +.++++.....+....+...|+||||+|+|.
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-----s~~gV---DdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-----SNRGV---DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 12222221 11222 2344444332222223456799999999998
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcC
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~ 488 (686)
.. .+|+||+.||. ...+++||++++...
T Consensus 138 ~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep~----------------- 165 (700)
T PRK12323 138 NH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ----------------- 165 (700)
T ss_pred HH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCChH-----------------
Confidence 87 89999999992 123477787766210
Q ss_pred cccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 005637 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNG 568 (686)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~g 568 (686)
.+.|.+++|+- .+.|.+++.+++.+.+.+.+.. .
T Consensus 166 ---------------------------------kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~~-----------E- 199 (700)
T PRK12323 166 ---------------------------------KIPVTVLSRCL-QFNLKQMPPGHIVSHLDAILGE-----------E- 199 (700)
T ss_pred ---------------------------------hhhhHHHHHHH-hcccCCCChHHHHHHHHHHHHH-----------c-
Confidence 13466777874 7999999999999888763321 1
Q ss_pred CccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 569 VKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 569 v~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
.+.+++++++.|++.+ ++..|...++++..+
T Consensus 200 -gi~~d~eAL~~IA~~A---~Gs~RdALsLLdQai 230 (700)
T PRK12323 200 -GIAHEVNALRLLAQAA---QGSMRDALSLTDQAI 230 (700)
T ss_pred -CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 5678999999999863 445677777776544
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.9e-14 Score=167.62 Aligned_cols=190 Identities=25% Similarity=0.309 Sum_probs=126.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... -+..+||+||||||||++||++|+.++..
T Consensus 17 dIIGQe~Iv~~LknaI~~~r-------------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR-------------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 37999999999988875110 01446999999999999999999998653
Q ss_pred EE-------E------------EecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCC
Q 005637 358 FV-------I------------ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (686)
Q Consensus 358 fv-------~------------v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (686)
-. . .+..++......+. ..++.+..........+...|+||||+|+|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kV---DdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------- 134 (944)
T PRK14949 66 QGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKV---DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------- 134 (944)
T ss_pred cCCCCCCCCCchHHHHHhcCCCceEEEeccccccCH---HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------
Confidence 10 0 00001110111222 223444433222222345679999999999887
Q ss_pred CCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005637 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (686)
Q Consensus 419 d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~ 498 (686)
.+++||+.||. ...+++||++++...
T Consensus 135 ------AqNALLKtLEE---------------------PP~~vrFILaTTe~~--------------------------- 160 (944)
T PRK14949 135 ------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ--------------------------- 160 (944)
T ss_pred ------HHHHHHHHHhc---------------------cCCCeEEEEECCCch---------------------------
Confidence 99999999992 123466666654210
Q ss_pred CCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH
Q 005637 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (686)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl 578 (686)
.+.+.+++|+ .++.|.+++.+++.+.+++.+.. . .+.++++++
T Consensus 161 -----------------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-----------E--gI~~edeAL 203 (944)
T PRK14949 161 -----------------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-----------E--QLPFEAEAL 203 (944)
T ss_pred -----------------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHH
Confidence 1345677887 47999999999999988763222 1 578999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 579 RLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+.|++.+ ++..|...++++..+
T Consensus 204 ~lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 204 TLLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999963 555788888887655
No 93
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.5e-15 Score=154.47 Aligned_cols=128 Identities=24% Similarity=0.348 Sum_probs=102.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|-|.-...+.+.+.|..|....+-..+ - ++ .+|..++||||||||||++|+++|..+++.|
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~r--------v----------gI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLR--------V----------GI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccc--------c----------CC-CCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 678888899999888766554222211 0 01 2358999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+.+.++++. .+|.|+. ..++++.|..+.. ..+||||+||||.+...+.+ .+.+..+.+|..|..+++
T Consensus 195 l~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~s---e~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 195 LKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFS---EGTSSDREIQRTLMELLN 261 (388)
T ss_pred EEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEec---cccchhHHHHHHHHHHHH
Confidence 999999998 7899998 8999999998865 57899999999999887644 344555668888888887
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.7e-14 Score=162.10 Aligned_cols=185 Identities=27% Similarity=0.329 Sum_probs=128.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++..... +..+||+||+|||||++|+++|+.++..
T Consensus 17 divGq~~v~~~L~~~~~~~~l-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL-------------------------------HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999988851110 2458999999999999999999988642
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++++ ..|.+ .++++.....+....+...|++|||+|+++..
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~v~---~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--- 134 (509)
T PRK14958 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTKVE---DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--- 134 (509)
T ss_pred CCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCCHH---HHHHHHHHHhhccccCCcEEEEEEChHhcCHH---
Confidence 44444421 22222 24455443333222345679999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++.. .
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~~fIlattd~--~-------------------- 160 (509)
T PRK14958 135 -----------SFNALLKTLEE---------------------PPSHVKFILATTDH--H-------------------- 160 (509)
T ss_pred -----------HHHHHHHHHhc---------------------cCCCeEEEEEECCh--H--------------------
Confidence 89999999992 12346677665411 0
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|.- ++.|.+++.+++.+.+...+.. . .+.+
T Consensus 161 ----------------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~-----------e--gi~~ 198 (509)
T PRK14958 161 ----------------------------KLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKE-----------E--NVEF 198 (509)
T ss_pred ----------------------------hchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 12345777774 7899999999998877653221 2 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|++.+ +++.|.+.+.++..+
T Consensus 199 ~~~al~~ia~~s---~GslR~al~lLdq~i 225 (509)
T PRK14958 199 ENAALDLLARAA---NGSVRDALSLLDQSI 225 (509)
T ss_pred CHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 999999999874 456788888887764
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=2.1e-14 Score=169.76 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=140.1
Q ss_pred HhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 273 ~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..|+. |+|+++.++.+.+.+... .+.+++|+||||||||++|+++|+
T Consensus 179 ~~l~~-~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 179 GKIDP-LIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCCCc-ccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHH
Confidence 34454 799999999888776411 137899999999999999999998
Q ss_pred hc----------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCc
Q 005637 353 YV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (686)
Q Consensus 353 ~l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~ 421 (686)
.+ +..++.++++.+.. ..|.|+- +..+..++..+.. ..+.||||||||.+...+...+++.
T Consensus 226 ~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~~~~--- 297 (731)
T TIGR02639 226 RIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSGGSM--- 297 (731)
T ss_pred HHHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCCccH---
Confidence 87 66788999887763 4577765 6777888776432 3468999999999987532211112
Q ss_pred hHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005637 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (686)
Q Consensus 422 ~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~ 501 (686)
.+++.|+..|+. | .+.+|.++|..+..+.+
T Consensus 298 --~~~~~L~~~l~~--------g---------------~i~~IgaTt~~e~~~~~------------------------- 327 (731)
T TIGR02639 298 --DASNLLKPALSS--------G---------------KLRCIGSTTYEEYKNHF------------------------- 327 (731)
T ss_pred --HHHHHHHHHHhC--------C---------------CeEEEEecCHHHHHHHh-------------------------
Confidence 277888888871 1 36677777743221111
Q ss_pred hhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHH
Q 005637 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLI 581 (686)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~L 581 (686)
+ ..|.|.+||. .|.+.+++.++..+|++..+ .+|+. ...+.+++++++++
T Consensus 328 ------------~--------~d~al~rRf~-~i~v~~p~~~~~~~il~~~~----~~~e~-----~~~v~i~~~al~~~ 377 (731)
T TIGR02639 328 ------------E--------KDRALSRRFQ-KIDVGEPSIEETVKILKGLK----EKYEE-----FHHVKYSDEALEAA 377 (731)
T ss_pred ------------h--------hhHHHHHhCc-eEEeCCCCHHHHHHHHHHHH----HHHHh-----ccCcccCHHHHHHH
Confidence 1 2478999997 78999999999999998633 33332 22578999999999
Q ss_pred HHhcCCCCCChhH
Q 005637 582 AKKAISKNTGARG 594 (686)
Q Consensus 582 a~~a~~~~~GAR~ 594 (686)
+..+ .+..+.|.
T Consensus 378 ~~ls-~ryi~~r~ 389 (731)
T TIGR02639 378 VELS-ARYINDRF 389 (731)
T ss_pred HHhh-hccccccc
Confidence 8863 33333343
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.8e-14 Score=152.23 Aligned_cols=185 Identities=26% Similarity=0.321 Sum_probs=122.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+++++.+..++.... -+..+||+||||||||++|+++|+.++..
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-------------------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-------------------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999988875110 02457999999999999999999988532
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++++. ..+ -..++.+..........+...|++|||+|++...
T Consensus 66 ~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~~---v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--- 134 (363)
T PRK14961 66 NGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RTK---VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--- 134 (363)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---
Confidence 22222211 011 1223444332211111234569999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...++.||++++.. +
T Consensus 135 -----------a~naLLk~lEe---------------------~~~~~~fIl~t~~~--~-------------------- 160 (363)
T PRK14961 135 -----------SFNALLKTLEE---------------------PPQHIKFILATTDV--E-------------------- 160 (363)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCeEEEEEcCCh--H--------------------
Confidence 89999999982 11235566665411 0
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|. ..+.|.+++.+++.+++...+.. . .+.+
T Consensus 161 ----------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~-----------~--g~~i 198 (363)
T PRK14961 161 ----------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK-----------E--SIDT 198 (363)
T ss_pred ----------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 1335577887 47999999999999888753222 1 4678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+++++++|++.+ +++.|.+.+.++..+
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~l~~~~ 225 (363)
T PRK14961 199 DEYALKLIAYHA---HGSMRDALNLLEHAI 225 (363)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999973 345788888887764
No 97
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=1.6e-14 Score=132.34 Aligned_cols=110 Identities=30% Similarity=0.555 Sum_probs=84.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. ...+...+..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 68999999999999999999999999999999987 4466665 56777777764321 137999999999999874
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCC
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn 468 (686)
+...+...+.+++.|+..|+.... ...++++|+++|
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~------------------~~~~~~vI~ttn 110 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSS------------------KNSRVIVIATTN 110 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTT------------------TSSSEEEEEEES
T ss_pred --ccccccccccccceeeeccccccc------------------ccccceeEEeeC
Confidence 223344455689999999983110 134588898887
No 98
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.56 E-value=7.1e-14 Score=165.30 Aligned_cols=218 Identities=23% Similarity=0.325 Sum_probs=148.0
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+|++++++.|.+.+..+.+....... .+ + .++.++||+||||||||++|+++|+.++.+|
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~----~g--------------i-~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEH----LG--------------I-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHh----cC--------------C-CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 799999999999998744332111110 00 0 1247899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.+++.++. ..|.|.. +..++.+|..+.. ..++||||||||.+...++... ......+++.|+.+|++..
T Consensus 241 i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~- 310 (733)
T TIGR01243 241 ISINGPEIM-SKYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLK- 310 (733)
T ss_pred EEEecHHHh-cccccHH-HHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccc-
Confidence 999999887 5688876 5677888876532 4679999999999988754321 1223458999999998321
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
....+++|+++|..+
T Consensus 311 ------------------~~~~vivI~atn~~~----------------------------------------------- 325 (733)
T TIGR01243 311 ------------------GRGRVIVIGATNRPD----------------------------------------------- 325 (733)
T ss_pred ------------------cCCCEEEEeecCChh-----------------------------------------------
Confidence 112467776766321
Q ss_pred HhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 519 ~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.++ +||+..+.+..++.++..+|++... .+..+ .++..++.+++. ..++-...|.
T Consensus 326 ---~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~-------------~~~~l-~~d~~l~~la~~--t~G~~gadl~ 386 (733)
T TIGR01243 326 ---ALDPALRRPGRFDREIVIRVPDKRARKEILKVHT-------------RNMPL-AEDVDLDKLAEV--THGFVGADLA 386 (733)
T ss_pred ---hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh-------------cCCCC-ccccCHHHHHHh--CCCCCHHHHH
Confidence 0224444 4899999999999999999987321 11122 123346667764 4455556777
Q ss_pred HHHHHHHHHHHhc
Q 005637 597 SLLENILMDAMYE 609 (686)
Q Consensus 597 ~vIe~il~~al~e 609 (686)
.++......++.+
T Consensus 387 ~l~~~a~~~al~r 399 (733)
T TIGR01243 387 ALAKEAAMAALRR 399 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666555543
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=7.5e-14 Score=161.35 Aligned_cols=185 Identities=28% Similarity=0.330 Sum_probs=126.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++..... +..+||+||+|||||++|+++|+.++..
T Consensus 17 divGQe~vv~~L~~~l~~~rl-------------------------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRL-------------------------------HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 379999999999988852110 1457999999999999999999998652
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++++ ..+. ..++++..........+...|+||||+|+|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~V---ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--- 134 (647)
T PRK07994 66 TGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (647)
T ss_pred cCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH---
Confidence 23333321 1222 224444433222222345579999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++...
T Consensus 135 -----------a~NALLKtLEE---------------------Pp~~v~FIL~Tt~~~---------------------- 160 (647)
T PRK07994 135 -----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------- 160 (647)
T ss_pred -----------HHHHHHHHHHc---------------------CCCCeEEEEecCCcc----------------------
Confidence 99999999992 123467777665210
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|. ..+.|.+++.+++.+.+...+.. . .+.+
T Consensus 161 ----------------------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~-----------e--~i~~ 198 (647)
T PRK07994 161 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA-----------E--QIPF 198 (647)
T ss_pred ----------------------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 1446688885 58999999999999888763221 1 4678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+++++..|+..+ ++..|...++++..+
T Consensus 199 e~~aL~~Ia~~s---~Gs~R~Al~lldqai 225 (647)
T PRK07994 199 EPRALQLLARAA---DGSMRDALSLTDQAI 225 (647)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999863 444677777776544
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.9e-14 Score=159.65 Aligned_cols=186 Identities=25% Similarity=0.308 Sum_probs=127.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... .+..+||+||+|||||++|+++|+.++..
T Consensus 14 eivGq~~i~~~L~~~i~~~r-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-------------------------------INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 37999999999998885110 01347999999999999999999987531
Q ss_pred --------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhc
Q 005637 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 358 --------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r 411 (686)
++.+|++. ..|.+ .++++..........+...|++|||+|.+...
T Consensus 63 ~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-----~~gvd---~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~- 133 (584)
T PRK14952 63 QGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-----HGGVD---DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA- 133 (584)
T ss_pred cCCCCCcccccHHHHHhhcccCCCceEEEecccc-----ccCHH---HHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-
Confidence 22333221 12222 23333322222122245679999999999887
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccc
Q 005637 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (686)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~ 491 (686)
.+++||+.||. ...+++||++++.. .
T Consensus 134 -------------A~NALLK~LEE---------------------pp~~~~fIL~tte~--~------------------ 159 (584)
T PRK14952 134 -------------GFNALLKIVEE---------------------PPEHLIFIFATTEP--E------------------ 159 (584)
T ss_pred -------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh--H------------------
Confidence 99999999992 23357777765511 0
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcc
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l 571 (686)
.+.+.+++|. .++.|.+++.+++.+.+...+.. . .+
T Consensus 160 ------------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~-----------e--gi 195 (584)
T PRK14952 160 ------------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ-----------E--GV 195 (584)
T ss_pred ------------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH-----------c--CC
Confidence 1346678885 48999999999998888653221 2 46
Q ss_pred ccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 572 HFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.++++++.+|++.+ +++.|.+.+.++.++.
T Consensus 196 ~i~~~al~~Ia~~s---~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 196 VVDDAVYPLVIRAG---GGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 78999999999863 4557888899888654
No 101
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1e-14 Score=160.58 Aligned_cols=198 Identities=27% Similarity=0.386 Sum_probs=143.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-CEEEEecccccccCcccccHHHHHHHHHhhcchhhHh----hcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA----AQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~----a~~gILfIDEID 405 (686)
.++|||||||||||++||.|.+.++. +--.++..++. ..|+|++ +..++++|..|...... ..=.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 78999999999999999999999964 34558888888 6899999 78899999877533221 122589999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccH-HHHHHhccccCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSS 484 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~L-ek~i~~r~~~~~ 484 (686)
.+++.|++..++..++.. +.++||.-|||.. ...|+++|--+|-.|| ++++
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~DlIDEAL-------- 386 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDLIDEAL-------- 386 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhcccHH-------------------hhhcEEEEeccCchhhHHHHh--------
Confidence 999999988776666655 9999999999632 2457999987775442 1111
Q ss_pred CCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHH
Q 005637 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (686)
Q Consensus 485 igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~ 564 (686)
++| +|+.+.+...-+++.-..+|++.+-+++
T Consensus 387 --------------------------------------LRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rM-------- 417 (744)
T KOG0741|consen 387 --------------------------------------LRP---GRLEVQMEISLPDEKGRLQILKIHTKRM-------- 417 (744)
T ss_pred --------------------------------------cCC---CceEEEEEEeCCCccCceEEEEhhhhhh--------
Confidence 234 6888888888788888888887643332
Q ss_pred hhcC-CccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 565 QMNG-VKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 565 ~~~g-v~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
..++ ..-.++ ++.|+.. ++++..-+|..+|.....-||.+...
T Consensus 418 re~~~l~~dVd---l~elA~l--TKNfSGAEleglVksA~S~A~nR~vk 461 (744)
T KOG0741|consen 418 RENNKLSADVD---LKELAAL--TKNFSGAELEGLVKSAQSFAMNRHVK 461 (744)
T ss_pred hhcCCCCCCcC---HHHHHHH--hcCCchhHHHHHHHHHHHHHHHhhhc
Confidence 2221 122233 4555553 56777789999999998888877654
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=6.4e-14 Score=146.65 Aligned_cols=174 Identities=26% Similarity=0.356 Sum_probs=114.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
++||+.++..|..++.. + -..++|||||||||||+.|+++|+.++.+
T Consensus 38 ~~gQe~vV~~L~~a~~~---~-----------------------------~lp~~LFyGPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR---R-----------------------------ILPHYLFYGPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred hcchHHHHHHHHHHHhh---c-----------------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc
Confidence 69999999999999861 0 02699999999999999999999999663
Q ss_pred -----EEEEecccccccCcccccHHHHHHHHHhhcc--hhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 358 -----FVIADATTLTQAGYVGEDVESILYKLLTVSD--YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 358 -----fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~--~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+...++++-..-..+.+.. ..+..+..... ........-|++|||.|.|+.+ +|.+|+
T Consensus 86 ~~~~rvl~lnaSderGisvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLr 150 (346)
T KOG0989|consen 86 LFPCRVLELNASDERGISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALR 150 (346)
T ss_pred ccccchhhhcccccccccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHH
Confidence 2333343332111111110 11111111110 0000112369999999999988 999999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
+.||.. .+++.||+-+|+.+
T Consensus 151 r~mE~~---------------------s~~trFiLIcnyls--------------------------------------- 170 (346)
T KOG0989|consen 151 RTMEDF---------------------SRTTRFILICNYLS--------------------------------------- 170 (346)
T ss_pred HHHhcc---------------------ccceEEEEEcCChh---------------------------------------
Confidence 999921 22345555555321
Q ss_pred hhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
.+++++.+|.. -+.|.+|..+++...|+.....- .+.++++|+++|++.
T Consensus 171 -----------rii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E-------------~v~~d~~al~~I~~~ 219 (346)
T KOG0989|consen 171 -----------RIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKE-------------GVDIDDDALKLIAKI 219 (346)
T ss_pred -----------hCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHh-------------CCCCCHHHHHHHHHH
Confidence 25567888886 58999999999998887532221 788999999999997
No 103
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.54 E-value=1.5e-14 Score=145.57 Aligned_cols=182 Identities=20% Similarity=0.319 Sum_probs=81.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+|+.|..++.. ..|+||+||||||||++|++++..+..-
T Consensus 4 dI~GQe~aKrAL~iAAaG----------------------------------~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----------------------------------GHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----------------------------------C--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHcC----------------------------------CCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 489999999999998851 2799999999999999999999887210
Q ss_pred EEEEeccccc----------------ccCc----ccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC
Q 005637 358 FVIADATTLT----------------QAGY----VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (686)
Q Consensus 358 fv~v~~s~l~----------------~sgy----vG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~ 417 (686)
-....-+.. ..-| ...+...++..-..-.++.+..|.+|||||||+-.+.+.
T Consensus 50 -~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~------- 121 (206)
T PF01078_consen 50 -TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS------- 121 (206)
T ss_dssp -CEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH-------
T ss_pred -chHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH-------
Confidence 000000000 0000 001111111111122356788899999999999999887
Q ss_pred CCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCc-ccccccc
Q 005637 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA-PVRANMR 496 (686)
Q Consensus 418 ~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~-~~~~~~~ 496 (686)
++++|++.||.+.+.|...| .......++++|+|.|. +..||.. +...+.
T Consensus 122 -------vld~Lr~ple~g~v~i~R~~--------~~~~~Pa~f~lv~a~NP-------------cpCG~~~~~~~~C~- 172 (206)
T PF01078_consen 122 -------VLDALRQPLEDGEVTISRAG--------GSVTYPARFLLVAAMNP-------------CPCGYYGDPDNRCR- 172 (206)
T ss_dssp -------HHHHHHHHHHHSBEEEEETT--------EEEEEB--EEEEEEE-S----------------------------
T ss_pred -------HHHHHHHHHHCCeEEEEECC--------ceEEEecccEEEEEecc-------------cccccccccccccc-
Confidence 99999999995555543222 22345678999999883 5566533 222221
Q ss_pred cCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHH
Q 005637 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (686)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~ee 544 (686)
+.+.....++.+ +.-+|++|||+.+.+++++.+|
T Consensus 173 ----Cs~~~~~~Y~~r----------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 173 ----CSPRQIRRYQSR----------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ------------------------------------------------
T ss_pred ----cccccccccccc----------ccccccccccccccccccccCC
Confidence 122223333333 5578999999999998887654
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=8.9e-14 Score=165.03 Aligned_cols=185 Identities=25% Similarity=0.281 Sum_probs=125.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.||||+.+++.|..++..... ...+||+||+|||||++|+.||+.+++.
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-------------------------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-------------------------------NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 379999999999988851100 1458999999999999999999998631
Q ss_pred --------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhc
Q 005637 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 358 --------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r 411 (686)
++.++... ..|. +.++++.....+........|+||||+|+|+..
T Consensus 65 ~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-----~~~V---d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~- 135 (824)
T PRK07764 65 EGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-----HGGV---DDARELRERAFFAPAESRYKIFIIDEAHMVTPQ- 135 (824)
T ss_pred cCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-----cCCH---HHHHHHHHHHHhchhcCCceEEEEechhhcCHH-
Confidence 22222211 1122 223333322211112345679999999999887
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccc
Q 005637 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (686)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~ 491 (686)
.++.||++||. ...+++||++++.. ++
T Consensus 136 -------------a~NaLLK~LEE---------------------pP~~~~fIl~tt~~--~k----------------- 162 (824)
T PRK07764 136 -------------GFNALLKIVEE---------------------PPEHLKFIFATTEP--DK----------------- 162 (824)
T ss_pred -------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCh--hh-----------------
Confidence 99999999992 12346777765421 11
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcc
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l 571 (686)
+.+.+++|.. ++.|.+++.+++.++|.+.++. . .+
T Consensus 163 -------------------------------Ll~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~-----------E--Gv 197 (824)
T PRK07764 163 -------------------------------VIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQ-----------E--GV 197 (824)
T ss_pred -------------------------------hhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHH-----------c--CC
Confidence 2245667764 7999999999999888753222 2 46
Q ss_pred ccCHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 572 HFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
.++++++.+|+..+ +...|.+.+.+++++
T Consensus 198 ~id~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 198 PVEPGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 78999999999873 345788999998876
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=153.80 Aligned_cols=185 Identities=25% Similarity=0.348 Sum_probs=128.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
|+||+.+++.|..++.... .+.++||+||+|||||++|+.+|+.++.
T Consensus 15 liGQe~vv~~L~~a~~~~r-------------------------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNK-------------------------------IPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 7999999999988774110 1258999999999999999999987632
Q ss_pred ----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
.++.+|+++ ..|.+ .++++..........+...|++|||+|.+...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----~~~vd---dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~---- 131 (491)
T PRK14964 64 GPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----NTSVD---DIKVILENSCYLPISSKFKVYIIDEVHMLSNS---- 131 (491)
T ss_pred CCCCCCccccHHHHHHhccCCCCEEEEeccc-----CCCHH---HHHHHHHHHHhccccCCceEEEEeChHhCCHH----
Confidence 245555532 23322 24444443322222356679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.+++||+.||. ....++||++++. .++
T Consensus 132 ----------A~NaLLK~LEe---------------------Pp~~v~fIlatte--~~K-------------------- 158 (491)
T PRK14964 132 ----------AFNALLKTLEE---------------------PAPHVKFILATTE--VKK-------------------- 158 (491)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hHH--------------------
Confidence 89999999992 1223666766541 111
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
+.+.+++|.- .+.|.+++.+++.+.+...+.. . .+.++
T Consensus 159 ----------------------------l~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~-----------E--gi~i~ 196 (491)
T PRK14964 159 ----------------------------IPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKK-----------E--NIEHD 196 (491)
T ss_pred ----------------------------HHHHHHHhhe-eeecccccHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 2244666664 6999999999999888753222 1 57899
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++++|++.+ +++.|.+.+.++.++.
T Consensus 197 ~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 197 EESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 4567888888887664
No 106
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.7e-13 Score=155.15 Aligned_cols=185 Identities=29% Similarity=0.363 Sum_probs=128.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
++||+.+++.|..++.... .+.++||+||||||||++|+++|+.++..
T Consensus 23 liGq~~vv~~L~~ai~~~r-------------------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDR-------------------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 7999999999988775110 12689999999999999999999998542
Q ss_pred ---------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 358 ---------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 358 ---------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
++.+|+. ...|. ..++.++..+......+...|++|||+|.+...
T Consensus 72 ~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa-----s~~~v---d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~ 143 (507)
T PRK06645 72 LITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA-----SKTSV---DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG 143 (507)
T ss_pred ccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc-----CCCCH---HHHHHHHHHHHhccccCCcEEEEEEChhhcCHH
Confidence 2222221 11222 234445444333222356689999999999876
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
.+++||+.||. ...+++||++++.. +
T Consensus 144 --------------a~naLLk~LEe---------------------pp~~~vfI~aTte~--~----------------- 169 (507)
T PRK06645 144 --------------AFNALLKTLEE---------------------PPPHIIFIFATTEV--Q----------------- 169 (507)
T ss_pred --------------HHHHHHHHHhh---------------------cCCCEEEEEEeCCh--H-----------------
Confidence 89999999982 12346677665411 0
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
.+.+.+.+|.. ++.|.+++.+++.+++...++. . .
T Consensus 170 -------------------------------kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~-----------e--g 204 (507)
T PRK06645 170 -------------------------------KIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQ-----------E--N 204 (507)
T ss_pred -------------------------------HhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHH-----------c--C
Confidence 02345777774 7999999999999998764322 1 5
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.++++++++|++.+ +++.|.+.+.++.++.
T Consensus 205 i~ie~eAL~~Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 205 LKTDIEALRIIAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 678999999999963 4567999999988754
No 107
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.8e-14 Score=147.49 Aligned_cols=156 Identities=24% Similarity=0.324 Sum_probs=120.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcE--E
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGI--V 399 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gI--L 399 (686)
+-+||+||||||||+|+|++|+.+. ..++++++..+- ++|++++ ++.+.++|+.-...++. .+.. +
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVfv 254 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVFV 254 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEEE
Confidence 7789999999999999999999883 348889998887 7899998 89999999876554443 3333 5
Q ss_pred EEccccccchhccccccCCCCc-hHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHh
Q 005637 400 YIDEVDKITKKAESLNISRDVS-GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (686)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~-~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~ 478 (686)
+|||++.+...|.+...+++.+ .-++.++||..||. + -...|+++.+|+|..+ .
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr----------l---------K~~~NvliL~TSNl~~---s--- 309 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR----------L---------KRYPNVLILATSNLTD---S--- 309 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH----------h---------ccCCCEEEEeccchHH---H---
Confidence 7899999999886544333333 44799999999991 1 1245788888887321 1
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHH
Q 005637 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (686)
Q Consensus 479 r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~k 558 (686)
+.-.|+.|-|++....+++.+.+.+|++..+.++.+
T Consensus 310 --------------------------------------------iD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 310 --------------------------------------------IDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred --------------------------------------------HHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 225689999999999999999999999998877754
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2e-13 Score=155.52 Aligned_cols=186 Identities=25% Similarity=0.293 Sum_probs=126.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.+++.|..++.... .+..+||+||+|||||++|+++|+.++.
T Consensus 17 diiGq~~~v~~L~~~i~~~r-------------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-------------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999988875110 0245899999999999999999998753
Q ss_pred -----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 357 -----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
.++.+++. ...|.+ .++.++.........+...|++|||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--- 134 (546)
T PRK14957 66 TGVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--- 134 (546)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH---
Confidence 23333321 123322 22333332222222345679999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.||+.||. ....++||++++. ..
T Consensus 135 -----------a~naLLK~LEe---------------------pp~~v~fIL~Ttd--~~-------------------- 160 (546)
T PRK14957 135 -----------SFNALLKTLEE---------------------PPEYVKFILATTD--YH-------------------- 160 (546)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCceEEEEECC--hh--------------------
Confidence 99999999992 1123556665441 00
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|.. ++.|.+++.+++.+.+...+.. . .+.+
T Consensus 161 ----------------------------kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~il~~-----------e--gi~~ 198 (546)
T PRK14957 161 ----------------------------KIPVTILSRCI-QLHLKHISQADIKDQLKIILAK-----------E--NINS 198 (546)
T ss_pred ----------------------------hhhhhHHHhee-eEEeCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 12345778884 8999999999999888753222 2 4688
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++++|++.+ ++..|.+.+.++.++.
T Consensus 199 e~~Al~~Ia~~s---~GdlR~alnlLek~i~ 226 (546)
T PRK14957 199 DEQSLEYIAYHA---KGSLRDALSLLDQAIS 226 (546)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999974 4557988888887663
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.9e-13 Score=156.94 Aligned_cols=185 Identities=28% Similarity=0.341 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++..... ...+||+||||||||++|+++|+.+...
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri-------------------------------~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRV-------------------------------APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 379999999999988852100 2589999999999999999999998642
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++.. ..+.+.-..+.+.+...+ ......||||||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~p---~~g~~kVIIIDEad~Lt~~--- 134 (624)
T PRK14959 66 TAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYAP---MEGRYKVFIIDEAHMLTRE--- 134 (624)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhhh---hcCCceEEEEEChHhCCHH---
Confidence 33333321 122222222333332222 2245679999999999877
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.||+.||. ...+++||++++...
T Consensus 135 -----------a~naLLk~LEE---------------------P~~~~ifILaTt~~~---------------------- 160 (624)
T PRK14959 135 -----------AFNALLKTLEE---------------------PPARVTFVLATTEPH---------------------- 160 (624)
T ss_pred -----------HHHHHHHHhhc---------------------cCCCEEEEEecCChh----------------------
Confidence 89999999982 112466776655210
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|+. ++.|.+++.+++.+++...+.. . .+.+
T Consensus 161 ----------------------------kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~-----------e--gi~i 198 (624)
T PRK14959 161 ----------------------------KFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGR-----------E--GVDY 198 (624)
T ss_pred ----------------------------hhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 12234667775 6899999999999988753221 1 5679
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|++.+ +.++|..-+.++.++
T Consensus 199 d~eal~lIA~~s---~GdlR~Al~lLeqll 225 (624)
T PRK14959 199 DPAAVRLIARRA---AGSVRDSMSLLGQVL 225 (624)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 345788888877643
No 110
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.51 E-value=4.4e-13 Score=148.53 Aligned_cols=253 Identities=17% Similarity=0.261 Sum_probs=156.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhh-----------cchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ve~a~ 395 (686)
...++++|++||||+++|+++.... +.||+.++|..+.+ ...-..+|.. ..+.++.+.
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~--------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE--------SLLESELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH--------HHHHHHhcCCCCCCcCCCCcCCCCceeECC
Confidence 3789999999999999999997655 57899999987642 1111122221 123456678
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
+|+||||||+.++.. +|..|+..++...+. ..+....+.+ ++.+|++++. ++...
T Consensus 234 ~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~~~---~~rii~~t~~-~~~~~ 288 (441)
T PRK10365 234 GGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQ-------RVGSNQTISV---DVRLIAATHR-DLAAE 288 (441)
T ss_pred CCEEEEeccccCCHH--------------HHHHHHHHHccCcEE-------eCCCCceeee---ceEEEEeCCC-CHHHH
Confidence 999999999999998 999999999833321 1111122222 4667776652 44333
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhh
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEP 552 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~ 552 (686)
+.++ .|.++|..|+. ..+.++||.+ +|+..++...
T Consensus 289 ~~~~------------------------------------------~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~ 326 (441)
T PRK10365 289 VNAG------------------------------------------RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHF 326 (441)
T ss_pred HHcC------------------------------------------CchHHHHHHhccceecCCChhhcchhHHHHHHHH
Confidence 3322 36677777774 4577888885 5788888776
Q ss_pred HHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccc
Q 005637 553 KNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (686)
Q Consensus 553 l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~ 632 (686)
+.++.+++. .....+++++++.|.. |+|+.+.|+|++++++++..+-.. . |+.+.+..
T Consensus 327 l~~~~~~~~------~~~~~~~~~a~~~L~~--~~wpgN~reL~~~~~~~~~~~~~~---------~-----i~~~~l~~ 384 (441)
T PRK10365 327 LQRFAERNR------KAVKGFTPQAMDLLIH--YDWPGNIRELENAVERAVVLLTGE---------Y-----ISERELPL 384 (441)
T ss_pred HHHHHHHhC------CCCCCcCHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhCCCC---------c-----cchHhCch
Confidence 555433221 1234699999999999 567777899999999977642111 1 12211110
Q ss_pred ccCCCcceEEcCCChHHHHHHHHhhhh-hhhhhhccCCCCCCCcccCccc
Q 005637 633 EDRGCGAKILYGKGALDRYLAQHKRKD-LELQTNVAGADGEPEMETEIPS 681 (686)
Q Consensus 633 ~~~g~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 681 (686)
........ ......+. -+++++++. .+.+...+|...+.+..++||.
T Consensus 385 ~~~~~~~~-~~~~~~~~-~l~~~e~~~i~~~l~~~~gn~~~aa~~Lgisr 432 (441)
T PRK10365 385 AIASTPIP-LGQSQDIQ-PLVEVEKEVILAALEKTGGNKTEAARQLGITR 432 (441)
T ss_pred hhcccccC-cccccchh-hHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 00000000 00011122 255666654 4455667788888888898874
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.3e-13 Score=157.26 Aligned_cols=186 Identities=26% Similarity=0.343 Sum_probs=127.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... .+..+||+||+|||||++|+++|+.++.+
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-------------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-------------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 37999999999998885110 12578999999999999999999987542
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++.. .-.|. ..+++++.........+...||||||+|++...
T Consensus 66 ~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA-----s~~gV---d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--- 134 (709)
T PRK08691 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA-----SNTGI---DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--- 134 (709)
T ss_pred CCCCCCCCcccHHHHHHhccCccceEEEecc-----ccCCH---HHHHHHHHHHHhhhhhCCcEEEEEECccccCHH---
Confidence 1222221 11121 345555544332222345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.||+.||. ...++.||++++...
T Consensus 135 -----------A~NALLKtLEE---------------------Pp~~v~fILaTtd~~---------------------- 160 (709)
T PRK08691 135 -----------AFNAMLKTLEE---------------------PPEHVKFILATTDPH---------------------- 160 (709)
T ss_pred -----------HHHHHHHHHHh---------------------CCCCcEEEEEeCCcc----------------------
Confidence 89999999982 112356666655110
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|+- .+.|.+++.+++.+.+...+.. . .+.+
T Consensus 161 ----------------------------kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il~k-----------E--gi~i 198 (709)
T PRK08691 161 ----------------------------KVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDS-----------E--KIAY 198 (709)
T ss_pred ----------------------------ccchHHHHHHh-hhhcCCCCHHHHHHHHHHHHHH-----------c--CCCc
Confidence 13345667773 6889999999999988763222 2 5778
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++++|++.+ +++.|.+.++++.++.
T Consensus 199 d~eAL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 199 EPPALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred CHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 999999999974 4567999999887664
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.50 E-value=5.5e-13 Score=154.67 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=133.3
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
++||+.+++.+...+... .+.+++|+||||||||++|+++++..
T Consensus 156 iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~ 203 (615)
T TIGR02903 156 IVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKLK 203 (615)
T ss_pred ceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 799999999876655311 12689999999999999999997655
Q ss_pred ------CCCEEEEecccccc------cCcccccHHHH---HHHHHh------hcchhhHhhcCcEEEEccccccchhccc
Q 005637 355 ------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLT------VSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 355 ------~~pfv~v~~s~l~~------sgyvG~~~~~~---l~~l~~------~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
+.+|+.++|..+.. ..++|...... ....+. .....+..+.+|+|||||++.|...
T Consensus 204 ~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--- 280 (615)
T TIGR02903 204 HTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--- 280 (615)
T ss_pred CCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---
Confidence 35799999977521 01122110000 001111 1123455677899999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCC---ce-----EeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGD---NI-----QIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~---~i-----~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.|+.|+++|+...+.+.. +........ .+ .....++++|++++...
T Consensus 281 -----------~Q~~Ll~~Le~~~v~~~~-~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~-------------- 334 (615)
T TIGR02903 281 -----------LQNKLLKVLEDKRVEFSS-SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP-------------- 334 (615)
T ss_pred -----------HHHHHHHHHhhCeEEeec-ceeccCCcccchhhhhhcccCccceEEEEEeccccc--------------
Confidence 999999999855443221 100000000 00 00122355555544110
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
..+.|.|++|+. .+.|.+++.+|+.+|++..+..+
T Consensus 335 -----------------------------------~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~--------- 369 (615)
T TIGR02903 335 -----------------------------------EEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI--------- 369 (615)
T ss_pred -----------------------------------cccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc---------
Confidence 013477889987 57899999999999998743221
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~a 606 (686)
.+.+++++++.|+++.| .+|...+.++.++..+
T Consensus 370 ----~v~ls~eal~~L~~ys~----~gRraln~L~~~~~~~ 402 (615)
T TIGR02903 370 ----NVHLAAGVEELIARYTI----EGRKAVNILADVYGYA 402 (615)
T ss_pred ----CCCCCHHHHHHHHHCCC----cHHHHHHHHHHHHHHH
Confidence 35689999999999644 3366667777665444
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.9e-13 Score=151.61 Aligned_cols=185 Identities=28% Similarity=0.312 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
|+||+++++.|..++.... .+..+||+||||||||++|+++|+.+...
T Consensus 16 vvGq~~v~~~L~~~i~~~~-------------------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGR-------------------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hcChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 7999999999998885110 02456999999999999999999988431
Q ss_pred ----------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccc
Q 005637 358 ----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (686)
Q Consensus 358 ----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~ 415 (686)
++.++++ +..+. ..++++..........+...||+|||+|.+...
T Consensus 65 ~~~~~cg~C~sc~~i~~~~h~dv~el~~~-----~~~~v---d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~----- 131 (504)
T PRK14963 65 EDPKPCGECESCLAVRRGAHPDVLEIDAA-----SNNSV---EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS----- 131 (504)
T ss_pred CCCCCCCcChhhHHHhcCCCCceEEeccc-----ccCCH---HHHHHHHHHHhhccccCCCeEEEEECccccCHH-----
Confidence 3333332 11222 223333222211111245679999999998765
Q ss_pred cCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccc
Q 005637 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (686)
Q Consensus 416 ~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~ 495 (686)
.++.|++.|+. ...+++||++++..
T Consensus 132 ---------a~naLLk~LEe---------------------p~~~t~~Il~t~~~------------------------- 156 (504)
T PRK14963 132 ---------AFNALLKTLEE---------------------PPEHVIFILATTEP------------------------- 156 (504)
T ss_pred ---------HHHHHHHHHHh---------------------CCCCEEEEEEcCCh-------------------------
Confidence 89999999981 12245666655411
Q ss_pred ccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
..+.+.+.+|.. ++.|.+++.+++.+.+...+.. . .+.+++
T Consensus 157 -------------------------~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~-----------e--gi~i~~ 197 (504)
T PRK14963 157 -------------------------EKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEA-----------E--GREAEP 197 (504)
T ss_pred -------------------------hhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHH-----------c--CCCCCH
Confidence 013456777775 7999999999999988763221 2 466899
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++|++.+ +...|.+.+.+++++.
T Consensus 198 ~Al~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 198 EALQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 9999999974 4567999999998754
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.3e-13 Score=155.60 Aligned_cols=184 Identities=24% Similarity=0.346 Sum_probs=124.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
|+||+.+++.|..++..... +..+||+||+|||||++|+++|+.++..
T Consensus 18 viGQe~vv~~L~~~l~~~rl-------------------------------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred hcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 68999999999988851110 2457999999999999999999998641
Q ss_pred ----------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 358 ----------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
++.+|+. ...|. ..++++.....+....+...|++|||+|.|..
T Consensus 67 ~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-----s~~~V---d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 67 PDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-----SNRGV---DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-----cccCH---HHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 2222221 11222 23444444332222224456999999999988
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCc
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~ 489 (686)
. .++.||+.||. ...+++||++++.. .
T Consensus 139 ~--------------a~NaLLKtLEE---------------------PP~~~~fIL~Ttd~--~---------------- 165 (618)
T PRK14951 139 T--------------AFNAMLKTLEE---------------------PPEYLKFVLATTDP--Q---------------- 165 (618)
T ss_pred H--------------HHHHHHHhccc---------------------CCCCeEEEEEECCc--h----------------
Confidence 7 89999999982 12346666665411 0
Q ss_pred ccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCC
Q 005637 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (686)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv 569 (686)
.+.+.+++|. .++.|.+++.+++.+.+...+.. .
T Consensus 166 --------------------------------kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~-----------e-- 199 (618)
T PRK14951 166 --------------------------------KVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAA-----------E-- 199 (618)
T ss_pred --------------------------------hhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHH-----------c--
Confidence 0224477776 48999999999999888753221 1
Q ss_pred ccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
.+.++++++++|++.+ +++.|.+.++++..+
T Consensus 200 gi~ie~~AL~~La~~s---~GslR~al~lLdq~i 230 (618)
T PRK14951 200 NVPAEPQALRLLARAA---RGSMRDALSLTDQAI 230 (618)
T ss_pred CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 5678999999999963 445688877776554
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.2e-13 Score=152.73 Aligned_cols=186 Identities=27% Similarity=0.358 Sum_probs=128.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+++++.|..++.... .+..+||+||+|||||++|+.+|+.++.
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-------------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47999999999998885110 1256899999999999999999998753
Q ss_pred -----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 357 -----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
.++.++++. ..|. ..++.+..........+...|++|||+|.|...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~~~v---d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----NNGV---DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----cCCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 233444321 1222 234444433322222356679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++..
T Consensus 135 -----------a~naLLKtLEe---------------------pp~~~ifIlatt~~----------------------- 159 (559)
T PRK05563 135 -----------AFNALLKTLEE---------------------PPAHVIFILATTEP----------------------- 159 (559)
T ss_pred -----------HHHHHHHHhcC---------------------CCCCeEEEEEeCCh-----------------------
Confidence 89999999982 12346777765411
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
..+.|.+++|.. .+.|.+++.+++.+++...+.. . .+.+
T Consensus 160 ---------------------------~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~-----------e--gi~i 198 (559)
T PRK05563 160 ---------------------------HKIPATILSRCQ-RFDFKRISVEDIVERLKYILDK-----------E--GIEY 198 (559)
T ss_pred ---------------------------hhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 014466788876 6889999999999888753221 1 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++++.|+..+ +.+.|...+.++.++.
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 199 EDEALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 4567888888877654
No 116
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.48 E-value=4.9e-13 Score=151.35 Aligned_cols=249 Identities=17% Similarity=0.211 Sum_probs=143.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.+++.+..++. ...+++|+||||||||++|+.++..+..
T Consensus 193 dv~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred HhcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 37999999988776653 1268999999999999999999876521
Q ss_pred -CEEEEecccccc-cCccc----------------ccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCC
Q 005637 357 -PFVIADATTLTQ-AGYVG----------------EDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (686)
Q Consensus 357 -pfv~v~~s~l~~-sgyvG----------------~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (686)
.-..+..+.+.. .+... ......+..-....++.+..+.+|||||||++++.+.
T Consensus 239 ~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~-------- 310 (499)
T TIGR00368 239 TNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS-------- 310 (499)
T ss_pred CCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH--------
Confidence 001111111100 00000 0000110000011234567788999999999999887
Q ss_pred CCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc-ccccccc
Q 005637 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP-VRANMRA 497 (686)
Q Consensus 419 d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~-~~~~~~~ 497 (686)
+|+.|++.||...+.+...|.. .....++.+|+++|. +..||... ...+.
T Consensus 311 ------~~~~L~~~LE~~~v~i~r~g~~--------~~~pa~frlIaa~Np-------------cpcg~~~~~~~~c~-- 361 (499)
T TIGR00368 311 ------VLDALREPIEDGSISISRASAK--------IFYPARFQLVAAMNP-------------CPCGHYGGKNTHCR-- 361 (499)
T ss_pred ------HHHHHHHHHHcCcEEEEecCcc--------eeccCCeEEEEecCC-------------cccCcCCCCccccc--
Confidence 9999999999655544332211 122357888998883 33454322 22211
Q ss_pred CCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHH---------HHhhhHHHHHHHHHHHHhhc-
Q 005637 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---------VLTEPKNALGKQYRKMFQMN- 567 (686)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~---------IL~~~l~~L~kq~~~~~~~~- 567 (686)
+.......++. .+.++|++|||..+.+++++.+++.+ |-++...+-..|.++ +...
T Consensus 362 ---c~~~~~~~y~~----------~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R-~~~~~ 427 (499)
T TIGR00368 362 ---CSPQQISRYWN----------KLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR-YEKFA 427 (499)
T ss_pred ---CCHHHHHHHhh----------hccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 11222223333 36689999999999999987766532 111111111122111 2111
Q ss_pred CCc-------------cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 568 GVK-------------LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 568 gv~-------------l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
++. ..+++++.+.|.+..-..+..+|.+.+++. +...++++...
T Consensus 428 ~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 428 NINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred CCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 001 246778777777654455678999999987 45556665543
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=1.3e-12 Score=136.62 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=102.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-cCc----ccccHHHHHHHHH--------------hhcchhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGY----VGEDVESILYKLL--------------TVSDYNV 391 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-sgy----vG~~~~~~l~~l~--------------~~a~~~v 391 (686)
.++||.||||||||++|+++|+.++.+|+.++|..-.. ... .|+.....+.... ...+...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 68999999999999999999999999999998875321 222 2221111111110 0111111
Q ss_pred HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCccc
Q 005637 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (686)
Q Consensus 392 e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~ 471 (686)
....+++|+||||+++.++ +|+.|+.+||...+.+++.+.. +..+ ....++.+|+|+|...
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~----~~~i-~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT----SRYV-DVHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC----CceE-ecCCCCEEEEeeCCcc
Confidence 2346789999999999887 9999999999777777653311 1111 1234677888888421
Q ss_pred HHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 472 Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
|. ..+.+.+.|++|+ ..+.+..++.++..+|+..
T Consensus 163 ---------------~~------------------------------g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 163 ---------------YA------------------------------GVHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ---------------cc------------------------------ceecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 00 0001346688898 4678888888998989875
No 118
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.48 E-value=5.8e-13 Score=151.49 Aligned_cols=254 Identities=18% Similarity=0.251 Sum_probs=147.8
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+.+.+...|+|++.+|+.+.-++...... ... ++. ......|+||+|+||||||++||++
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~-------~~~------------~~~-~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHK-------NLP------------DGM-KIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCcc-------ccC------------CCc-cccccceEEEeCCCChhHHHHHHHH
Confidence 55667778999999999888777521100 000 000 0012369999999999999999999
Q ss_pred HHhcCC-CEEEE---ecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHH
Q 005637 351 ARYVNV-PFVIA---DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (686)
Q Consensus 351 A~~l~~-pfv~v---~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (686)
++.... .|+.. ++..++ +.........-+....+.+..+.+|+++|||++++.+. .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~-----~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLT-----AAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCcc-----ccceEccCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 998754 33321 222232 11000000000111123455678899999999999887 99
Q ss_pred HHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhH
Q 005637 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (686)
Q Consensus 427 ~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~ 506 (686)
.+|+++||...+++...|... . -..++.+|+|+|... ++++. .
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~-------~-l~~~~~viAa~NP~~-------g~y~~----------------------~ 360 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITT-------T-LNARCSVLAAANPIG-------GRYDP----------------------K 360 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEE-------E-ecCCcEEEEEeCCCC-------cccCC----------------------C
Confidence 999999996666554434211 1 224578888888531 11000 0
Q ss_pred HHHHhhcCchHHHhcCCChhhhcccCeEEEc-cCcChHHHHHHHhhhHH-------------------HHHHHHHHHHhh
Q 005637 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKN-------------------ALGKQYRKMFQM 566 (686)
Q Consensus 507 ~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f-~pLs~eeL~~IL~~~l~-------------------~L~kq~~~~~~~ 566 (686)
..+.+.+ .+.|.+++|||.++.+ +..+.+.-.+|+++.++ .+.++|.... .
T Consensus 361 ~~~~~n~--------~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~a-r 431 (509)
T smart00350 361 LTPEENI--------DLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYA-R 431 (509)
T ss_pred cChhhcc--------CCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHH-H
Confidence 1111222 3789999999987665 55566655666655322 1223333321 2
Q ss_pred cCCccccCHHHHHHHHHhcCC-------------CCCChhHHHHHHHHHHHHHHhcCC
Q 005637 567 NGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~~a~~-------------~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
..+...+++++.++|.+.... .....|.|..+++- ..|.+.+.
T Consensus 432 ~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRl--a~A~A~l~ 487 (509)
T smart00350 432 EKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRL--SEAHAKMR 487 (509)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHH--HHHHHHHc
Confidence 224557899999999875221 12357888888874 44444443
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=4.9e-13 Score=152.53 Aligned_cols=186 Identities=25% Similarity=0.343 Sum_probs=125.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... .+..+||+||||+|||++|+++|+.++..
T Consensus 17 divGq~~v~~~L~~~i~~~~-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-------------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998885110 02457999999999999999999998542
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++++ ...+. ..++++..........+...|++|||+|++...
T Consensus 66 ~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~-----~~~~v---d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--- 134 (527)
T PRK14969 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAA-----SNTQV---DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--- 134 (527)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceeEeecc-----ccCCH---HHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---
Confidence 2222221 11221 234455443322222345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++...
T Consensus 135 -----------a~naLLK~LEe---------------------pp~~~~fIL~t~d~~---------------------- 160 (527)
T PRK14969 135 -----------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ---------------------- 160 (527)
T ss_pred -----------HHHHHHHHHhC---------------------CCCCEEEEEEeCChh----------------------
Confidence 89999999992 123466676654110
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|. .++.|.+++.+++.+.+.+.+. .. .+.+
T Consensus 161 ----------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~-----------~e--gi~~ 198 (527)
T PRK14969 161 ----------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILE-----------QE--NIPF 198 (527)
T ss_pred ----------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 1223466776 3799999999999988765322 12 4678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++++.|++.+ ++..|...+.++.++.
T Consensus 199 ~~~al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 199 DATALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999973 3446888888877654
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.47 E-value=3.6e-13 Score=161.17 Aligned_cols=191 Identities=22% Similarity=0.302 Sum_probs=133.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.|+. |+||++.++.+.+.+... .+.+++|+||||||||++|+.+|+.
T Consensus 185 ~ld~-~iGr~~ei~~~i~~l~r~--------------------------------~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 185 KIDP-VLGRDDEIRQMIDILLRR--------------------------------RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCc-ccCCHHHHHHHHHHHhcC--------------------------------CcCceeEECCCCCCHHHHHHHHHHH
Confidence 4443 799999988888766411 1268999999999999999999987
Q ss_pred c----------CCCEEEEeccccc-ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 l----------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
+ +..++.++.+.+. ...|.|+- +..++.++..... ...+.||||||||.+...++. .++.|
T Consensus 232 i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~-~~~~d--- 303 (852)
T TIGR03345 232 IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQ-AGQGD--- 303 (852)
T ss_pred HhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCc-ccccc---
Confidence 6 2457788887765 24576665 5677777765421 135689999999999876322 12223
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
+-+.|+..|+ .| .+.+|.|++..+..+.+
T Consensus 304 --~~n~Lkp~l~--------~G---------------~l~~IgaTT~~e~~~~~-------------------------- 332 (852)
T TIGR03345 304 --AANLLKPALA--------RG---------------ELRTIAATTWAEYKKYF-------------------------- 332 (852)
T ss_pred --HHHHhhHHhh--------CC---------------CeEEEEecCHHHHhhhh--------------------------
Confidence 5567888887 12 26677787743211111
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
+ ..|.|.+||. +|.+.+++.++..+|++. +.+.|+. ...+.++++|+..++
T Consensus 333 -----------~--------~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~-----~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 333 -----------E--------KDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEK-----HHGVLILDEAVVAAV 383 (852)
T ss_pred -----------h--------ccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhh-----cCCCeeCHHHHHHHH
Confidence 1 3588999996 799999999999999864 4344433 135778999999888
Q ss_pred Hhc
Q 005637 583 KKA 585 (686)
Q Consensus 583 ~~a 585 (686)
+.+
T Consensus 384 ~ls 386 (852)
T TIGR03345 384 ELS 386 (852)
T ss_pred HHc
Confidence 863
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=151.25 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=126.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+++++.|..++.... .+..+||+||+|+|||++|+++|+.++..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-------------------------------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 37999999999998885110 02567999999999999999999998532
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++. +..|.+ .++++..........+...|++|||+|++...
T Consensus 66 ~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-----s~~~v~---~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--- 134 (576)
T PRK14965 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGA-----SNTGVD---DIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--- 134 (576)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeeeeecc-----CccCHH---HHHHHHHHHHhccccCCceEEEEEChhhCCHH---
Confidence 3333332 112222 23444333222222345679999999999877
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++.. +
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~~fIl~t~~~--~-------------------- 160 (576)
T PRK14965 135 -----------AFNALLKTLEE---------------------PPPHVKFIFATTEP--H-------------------- 160 (576)
T ss_pred -----------HHHHHHHHHHc---------------------CCCCeEEEEEeCCh--h--------------------
Confidence 89999999992 12346777765511 0
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|.. ++.|.+++.+++.+.+...+.+. .+.+
T Consensus 161 ----------------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~e-------------gi~i 198 (576)
T PRK14965 161 ----------------------------KVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQE-------------GISI 198 (576)
T ss_pred ----------------------------hhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHh-------------CCCC
Confidence 12345677765 78999999999988876532221 5778
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++..|++.+ +.+.|.+.+.++.++.
T Consensus 199 ~~~al~~la~~a---~G~lr~al~~Ldqlia 226 (576)
T PRK14965 199 SDAALALVARKG---DGSMRDSLSTLDQVLA 226 (576)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999974 4557888888876543
No 122
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=1.1e-12 Score=152.87 Aligned_cols=221 Identities=22% Similarity=0.296 Sum_probs=138.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.|+||+.+|+.+..++.++. ..++||.||||||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~--------------------------------~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR--------------------------------IGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC--------------------------------CCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 48999999998877664210 1589999999999999999999988
Q ss_pred --------------------------------CCCEEEEecccccccCcccc-cHHHHHHH-HHhhcchhhHhhcCcEEE
Q 005637 355 --------------------------------NVPFVIADATTLTQAGYVGE-DVESILYK-LLTVSDYNVAAAQQGIVY 400 (686)
Q Consensus 355 --------------------------------~~pfv~v~~s~l~~sgyvG~-~~~~~l~~-l~~~a~~~ve~a~~gILf 400 (686)
..||+.+.++.. +...+|. +....+.. -.....+.+..+.+||||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t-~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGAT-EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCc-HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 246666554432 1233442 21111110 011124556677889999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcc
Q 005637 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (686)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~ 480 (686)
||||+++.+. +|+.||.+|+...+.|...|. ... -..++++|+|.|..+
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~-------~~~-~~~~~~lIat~np~e--------- 180 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGL-------SVS-HPARFVLIGTMNPEE--------- 180 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCc-------eee-ecCCeEEEEecCCCC---------
Confidence 9999999988 999999999844333222221 111 235678888766210
Q ss_pred ccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcC-hHHHHHHHhhhHHH----
Q 005637 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNA---- 555 (686)
Q Consensus 481 ~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs-~eeL~~IL~~~l~~---- 555 (686)
..+.++|+.||+..|.+.+.. .++..+|+...+..
T Consensus 181 ----------------------------------------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 181 ----------------------------------------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred ----------------------------------------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 125688999999888888775 45556666542210
Q ss_pred --HHHHH----------HHHHhhcCCccccCHHHHHHHHHhcCCCCC-ChhHHHHHHHHH
Q 005637 556 --LGKQY----------RKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENI 602 (686)
Q Consensus 556 --L~kq~----------~~~~~~~gv~l~~s~eAl~~La~~a~~~~~-GAR~Lr~vIe~i 602 (686)
+...| .......--.+.++++++++|++.....+. |.|....+++-.
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 00001 000111123577899999999998666555 567666666544
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=1.4e-12 Score=131.56 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=108.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||||||||++|+++++.+ +.+++.+++..+... ....+... ....+|+|||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 789999999999999999999876 467888998877521 01111111 12369999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
..... .++.|..+++.. ...+..+|++++... .+
T Consensus 103 ~~~~~------------~~~~L~~~l~~~--------------------~~~~~~iIits~~~~-~~------------- 136 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYNRV--------------------REAGGRLLIAGRAAP-AQ------------- 136 (226)
T ss_pred cCChH------------HHHHHHHHHHHH--------------------HHcCCeEEEECCCCh-HH-------------
Confidence 65410 367777777610 001123445554210 00
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
. ....+.|.+|+ ...+.+++++.+++..+++..+..
T Consensus 137 -------------------------~-------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~---------- 174 (226)
T TIGR03420 137 -------------------------L-------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR---------- 174 (226)
T ss_pred -------------------------C-------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH----------
Confidence 0 00125577777 368999999999999888642111
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
..+.++++++++|++. +..+.|+|+++++.+-.
T Consensus 175 ---~~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 175 ---RGLQLPDEVADYLLRH---GSRDMGSLMALLDALDR 207 (226)
T ss_pred ---cCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 1567999999999994 55566999999998654
No 124
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=1.1e-12 Score=142.35 Aligned_cols=228 Identities=21% Similarity=0.295 Sum_probs=139.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
.|+||+++|+.|..++.++. .+++||.||+|||||++||++++.+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p~--------------------------------~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPK--------------------------------IGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred HHhChHHHHHHHHHhccCCC--------------------------------CCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999998875221 26899999999999999999988772
Q ss_pred -----CCEEEEeccc-------cc--------------ccCc----ccccHHHHH-----HHHHhh-----cchhhHhhc
Q 005637 356 -----VPFVIADATT-------LT--------------QAGY----VGEDVESIL-----YKLLTV-----SDYNVAAAQ 395 (686)
Q Consensus 356 -----~pfv~v~~s~-------l~--------------~sgy----vG~~~~~~l-----~~l~~~-----a~~~ve~a~ 395 (686)
.||. .+... +. ..-+ .|...+..+ .+.+.. .++.+..+.
T Consensus 66 ~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~ 144 (350)
T CHL00081 66 EVVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN 144 (350)
T ss_pred CccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecC
Confidence 2332 00000 00 0000 011111111 111111 245566788
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
+|+||||||+.+.+. +|+.|+++|+...+.+...| ..... ...+++|+|.|..
T Consensus 145 ~GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G-------~s~~~-p~rfiviaT~np~----- 197 (350)
T CHL00081 145 RGILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREG-------ISIRH-PARFVLVGSGNPE----- 197 (350)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCC-------eeeec-CCCEEEEeccCcc-----
Confidence 999999999999998 99999999984433332222 11122 2357777776631
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcC-hHHHHHHHhhhHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKN 554 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs-~eeL~~IL~~~l~ 554 (686)
...|+++|+.||...+.+..++ .++-.+|++....
T Consensus 198 --------------------------------------------eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 198 --------------------------------------------EGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred --------------------------------------------cCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 1126788999999999998887 4777778776321
Q ss_pred ------HHHHHH--------HHHH--hhcCCccccCHHHHHHHHHhcCCCC-CChhHHHHHHHHHHHHHHhc
Q 005637 555 ------ALGKQY--------RKMF--QMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 555 ------~L~kq~--------~~~~--~~~gv~l~~s~eAl~~La~~a~~~~-~GAR~Lr~vIe~il~~al~e 609 (686)
...++| .+.. ...-..+.+++++++++++.+..-+ -|-|.-..+++..-..|..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 234 FDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred cccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 001111 1111 1112367899999999998755433 35677776666554444443
No 125
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=1.7e-12 Score=138.51 Aligned_cols=191 Identities=26% Similarity=0.353 Sum_probs=122.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC---
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (686)
++|++.+++.|..++... ...+++|+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 689999999998877410 014799999999999999999999873
Q ss_pred --CCEEEEecccccccC--cc----------cc------cHHHHHHHHHhhcch-hhHhhcCcEEEEccccccchhcccc
Q 005637 356 --VPFVIADATTLTQAG--YV----------GE------DVESILYKLLTVSDY-NVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 356 --~pfv~v~~s~l~~sg--yv----------G~------~~~~~l~~l~~~a~~-~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
.+++.+++.++.... +. +. .....++.+...... ....+...+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 356778876653110 00 00 001122222211100 000134579999999999765
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.++.|+++|+.. ..+..||++++...
T Consensus 141 ----------~~~~L~~~le~~---------------------~~~~~~Il~~~~~~----------------------- 166 (337)
T PRK12402 141 ----------AQQALRRIMEQY---------------------SRTCRFIIATRQPS----------------------- 166 (337)
T ss_pred ----------HHHHHHHHHHhc---------------------cCCCeEEEEeCChh-----------------------
Confidence 788999999810 11233454543110
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
.+.+.+.+|. ..+.|.+++.+++.+++...+.. . .+.++
T Consensus 167 ---------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~ 205 (337)
T PRK12402 167 ---------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEA-----------E--GVDYD 205 (337)
T ss_pred ---------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 0234577776 46899999999998888763221 2 45699
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+++++.|++.. +.+.|.+.+.++..+
T Consensus 206 ~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 206 DDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999974 455788887777543
No 126
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=8.8e-13 Score=142.60 Aligned_cols=226 Identities=21% Similarity=0.313 Sum_probs=136.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.|+||+++|+.|..++..+. ..+++|.|+||+|||++++++++.+
T Consensus 5 ~ivgq~~~~~al~~~~~~~~--------------------------------~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK--------------------------------IGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC--------------------------------CCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 38999999999877664111 2789999999999999999999887
Q ss_pred ----CCCEE---------EEecc-------------------cc----cccCcccccHHHHHHHHH-----hhcchhhHh
Q 005637 355 ----NVPFV---------IADAT-------------------TL----TQAGYVGEDVESILYKLL-----TVSDYNVAA 393 (686)
Q Consensus 355 ----~~pfv---------~v~~s-------------------~l----~~sgyvG~~~~~~l~~l~-----~~a~~~ve~ 393 (686)
+.++- ..+|. ++ ++...+|.. .+...+ ...++.+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~---d~~~~l~~g~~~~~~GlL~~ 129 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL---DIERALTEGVKAFEPGLLAR 129 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch---hHhhHhhcCCEEeecCccee
Confidence 22221 00010 10 011233321 111111 123345666
Q ss_pred hcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHH
Q 005637 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE 473 (686)
Q Consensus 394 a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Le 473 (686)
+.+|+||||||+.+.+. +|+.|+.+|+...+.+...| .....+ .++++|++.|..
T Consensus 130 A~~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G-------~~~~~~-~r~iviat~np~--- 184 (337)
T TIGR02030 130 ANRGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREG-------ISIRHP-ARFVLVGSGNPE--- 184 (337)
T ss_pred ccCCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECC-------EEEEcC-CCEEEEeccccc---
Confidence 78899999999999887 99999999984333322222 111222 357777776521
Q ss_pred HHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh-HHHHHHHhhh
Q 005637 474 KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEP 552 (686)
Q Consensus 474 k~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~-eeL~~IL~~~ 552 (686)
...+.+.|+.||...+.+..+.. ++..+|++..
T Consensus 185 ----------------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 185 ----------------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred ----------------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 11267889999999999988876 7777777662
Q ss_pred HHH------HHHHH--------HHHH--hhcCCccccCHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHHHHhc
Q 005637 553 KNA------LGKQY--------RKMF--QMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILMDAMYE 609 (686)
Q Consensus 553 l~~------L~kq~--------~~~~--~~~gv~l~~s~eAl~~La~~a~~~~~-GAR~Lr~vIe~il~~al~e 609 (686)
... ..+.+ +... ...-..+.+++++++++++.+..-+. |-|....++...-..|..+
T Consensus 219 ~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 219 TEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred hhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 211 00001 0111 11123677999999999986443222 4577666666554444443
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=1.5e-12 Score=140.56 Aligned_cols=226 Identities=22% Similarity=0.301 Sum_probs=133.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC---
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (686)
|+||+++|+.+..++.+. ...|+||.|+||||||++||++|+.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~~--------------------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~ 57 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP--------------------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIK 57 (334)
T ss_pred hCCHHHHHHHHHHHHhcc--------------------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcc
Confidence 799999999888655300 016899999999999999999999983
Q ss_pred ----CC--EEEEecc-cc----------------------cccCccccc-HHHHH-HHHHhhcchhhHhhcCcEEEEccc
Q 005637 356 ----VP--FVIADAT-TL----------------------TQAGYVGED-VESIL-YKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 356 ----~p--fv~v~~s-~l----------------------~~sgyvG~~-~~~~l-~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
.+ +..+.+. ++ ++...+|.- ....+ ..-+.-.++.+..+.+|+||||||
T Consensus 58 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEI 137 (334)
T PRK13407 58 AVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEV 137 (334)
T ss_pred hhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecCh
Confidence 21 1111110 00 001122211 00100 000111234455677899999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCC
Q 005637 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (686)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ 484 (686)
+.+.++ +|+.|++.|+...+.|...|. .+. ....+++|+|.|..+
T Consensus 138 nrl~~~--------------~q~~Lle~mee~~v~v~r~G~-------~~~-~p~rfiviAt~NP~e------------- 182 (334)
T PRK13407 138 NLLEDH--------------IVDLLLDVAQSGENVVEREGL-------SIR-HPARFVLVGSGNPEE------------- 182 (334)
T ss_pred HhCCHH--------------HHHHHHHHHHcCCeEEEECCe-------EEe-cCCCEEEEecCCccc-------------
Confidence 999887 999999999854443322331 111 223577777766311
Q ss_pred CCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh-HHHHHHHhhhHH------HHH
Q 005637 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN------ALG 557 (686)
Q Consensus 485 igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~-eeL~~IL~~~l~------~L~ 557 (686)
..+.+.++.||...+.+.+... ++..+|+..... .+.
T Consensus 183 ------------------------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 183 ------------------------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred ------------------------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 1256789999998888877766 676777765321 010
Q ss_pred -----------HHHHHHHhhcCCccccCHHHHHHHHHhcCCCC-CChhHHHHHHHHHHHHHHh
Q 005637 558 -----------KQYRKMFQMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMY 608 (686)
Q Consensus 558 -----------kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~-~GAR~Lr~vIe~il~~al~ 608 (686)
.+... ....-..+.+++++++++++.+..-+ -|-|.-..++...-..|+.
T Consensus 227 ~~~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l 288 (334)
T PRK13407 227 AKWGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAF 288 (334)
T ss_pred ccccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH
Confidence 11111 11112367889999999998755333 3566665555554444443
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.9e-12 Score=150.89 Aligned_cols=190 Identities=25% Similarity=0.328 Sum_probs=126.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... .+..+||+||+|||||++|+++|+.+..+
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-------------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-------------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 37999999999999885110 02567999999999999999999988542
Q ss_pred EEEE---ecc----------c---ccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCc
Q 005637 358 FVIA---DAT----------T---LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (686)
Q Consensus 358 fv~v---~~s----------~---l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~ 421 (686)
-... .|. + +..++..|. ..++.+..........+...|++|||+|.+...
T Consensus 68 ~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~v---d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------- 133 (725)
T PRK07133 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNGV---DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------- 133 (725)
T ss_pred ccCCCCCchhHHHHhhcCCCcEEEEeccccCCH---HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------
Confidence 1100 000 0 000111222 224444443332222356679999999999876
Q ss_pred hHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005637 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (686)
Q Consensus 422 ~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~ 501 (686)
.+++||+.||. ....++||++++.. +
T Consensus 134 ---A~NALLKtLEE---------------------PP~~tifILaTte~--~---------------------------- 159 (725)
T PRK07133 134 ---AFNALLKTLEE---------------------PPKHVIFILATTEV--H---------------------------- 159 (725)
T ss_pred ---HHHHHHHHhhc---------------------CCCceEEEEEcCCh--h----------------------------
Confidence 89999999992 12346667665411 0
Q ss_pred hhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHH
Q 005637 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLI 581 (686)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~L 581 (686)
.+.|.+++|+. ++.|.+++.+++.+++...+.. . .+.+++++++.|
T Consensus 160 --------------------KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~k-----------e--gI~id~eAl~~L 205 (725)
T PRK07133 160 --------------------KIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEK-----------E--NISYEKNALKLI 205 (725)
T ss_pred --------------------hhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHH
Confidence 13456888885 7999999999999988753221 1 467899999999
Q ss_pred HHhcCCCCCChhHHHHHHHHHH
Q 005637 582 AKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 582 a~~a~~~~~GAR~Lr~vIe~il 603 (686)
+..+ +++.|.+.+.++.+.
T Consensus 206 A~lS---~GslR~AlslLekl~ 224 (725)
T PRK07133 206 AKLS---SGSLRDALSIAEQVS 224 (725)
T ss_pred HHHc---CCCHHHHHHHHHHHH
Confidence 9873 355788888888754
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.9e-12 Score=145.29 Aligned_cols=184 Identities=23% Similarity=0.314 Sum_probs=123.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
|+||+.+++.|..++... + -+..+||+||||+|||++|+++|+.+...
T Consensus 19 iiGq~~~v~~L~~~i~~~----------~---------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFN----------R---------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQN 67 (451)
T ss_pred hcCcHHHHHHHHHHHHcC----------C---------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999998888511 0 12568999999999999999999987432
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++ ....|.+ .++.+..........+...|++|||+|.+...
T Consensus 68 ~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g-----~~~~gid---~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--- 136 (451)
T PRK06305 68 PTEDQEPCNQCASCKEISSGTSLDVLEIDG-----ASHRGIE---DIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--- 136 (451)
T ss_pred cccCCCCCcccHHHHHHhcCCCCceEEeec-----cccCCHH---HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---
Confidence 222222 1122222 22222222222112356789999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.|++.||. ...+++||++++..
T Consensus 137 -----------~~n~LLk~lEe---------------------p~~~~~~Il~t~~~----------------------- 161 (451)
T PRK06305 137 -----------AFNSLLKTLEE---------------------PPQHVKFFLATTEI----------------------- 161 (451)
T ss_pred -----------HHHHHHHHhhc---------------------CCCCceEEEEeCCh-----------------------
Confidence 89999999992 11235666655411
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
..+.+.+++|.. ++.|.+++++++.+++...+.. . .+.+
T Consensus 162 ---------------------------~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~-----------e--g~~i 200 (451)
T PRK06305 162 ---------------------------HKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQ-----------E--GIET 200 (451)
T ss_pred ---------------------------HhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 013466778886 7999999999999888753221 1 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|+..+ +.+.|.+.+.++.+.
T Consensus 201 ~~~al~~L~~~s---~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 201 SREALLPIARAA---QGSLRDAESLYDYVV 227 (451)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 445688888888754
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.8e-12 Score=147.25 Aligned_cols=185 Identities=28% Similarity=0.356 Sum_probs=126.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
|+||+.+++.|..++.... -+..+||+||+|+|||++|+++|+.+..
T Consensus 16 iiGqe~v~~~L~~~I~~gr-------------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNR-------------------------------LAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 7999999999998885110 0245699999999999999999988732
Q ss_pred ----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
.++.+++++ ..|. ..++++..........+...|++|||+|.+...
T Consensus 65 ~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~gI---d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---- 132 (535)
T PRK08451 65 GPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRGI---DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---- 132 (535)
T ss_pred CCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----
Confidence 122233211 1111 234444433211111245579999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.+++||+.||. ...++.||++++..
T Consensus 133 ----------A~NALLK~LEE---------------------pp~~t~FIL~ttd~------------------------ 157 (535)
T PRK08451 133 ----------AFNALLKTLEE---------------------PPSYVKFILATTDP------------------------ 157 (535)
T ss_pred ----------HHHHHHHHHhh---------------------cCCceEEEEEECCh------------------------
Confidence 99999999992 12346677665410
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
..+.|.+++|. .++.|.+++.+++.+.+...+.. . .+.++
T Consensus 158 --------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~-----------E--Gi~i~ 197 (535)
T PRK08451 158 --------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTILEK-----------E--GVSYE 197 (535)
T ss_pred --------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 02446788885 48999999999999887653222 2 46789
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++++|++.+ ++..|.+.+.++.++.
T Consensus 198 ~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 198 PEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 99999999973 4557888888887664
No 131
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.2e-13 Score=156.59 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=159.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC---
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (686)
|.|.+.++..|++.|..+|.......... --|++++||+||||||||++|+++|..+.
T Consensus 267 vggl~~~i~~LKEmVl~PLlyPE~f~~~~-------------------itpPrgvL~~GppGTGkTl~araLa~~~s~~~ 327 (1080)
T KOG0732|consen 267 VGGLENYINQLKEMVLLPLLYPEFFDNFN-------------------ITPPRGVLFHGPPGTGKTLMARALAAACSRGN 327 (1080)
T ss_pred cccHHHHHHHHHHHHHhHhhhhhHhhhcc-------------------cCCCcceeecCCCCCchhHHHHhhhhhhcccc
Confidence 79999999999999987776433222100 02358899999999999999999998883
Q ss_pred --CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005637 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (686)
Q Consensus 356 --~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lL 433 (686)
..|+.-+.++.. +.|+|+. +..++.+|+.+.- .++.|||+||||-+++.|.. -.+.....+...||.+|
T Consensus 328 ~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLm 398 (1080)
T KOG0732|consen 328 RKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALM 398 (1080)
T ss_pred cccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccc---hHHHhhhhHHHHHHHhc
Confidence 335444555554 7899998 8899999998764 68999999999999887643 22334456899999999
Q ss_pred hCceeecCCCCCccCCCCCceEeecc-ceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 434 EGTVVNVPEKGARKHPRGDNIQIDTK-DILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 434 Eg~~v~vp~~G~~~~~~g~~i~Vdts-niIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
+| ++++ .+++|.++|..+
T Consensus 399 dG--------------------ldsRgqVvvigATnRpd----------------------------------------- 417 (1080)
T KOG0732|consen 399 DG--------------------LDSRGQVVVIGATNRPD----------------------------------------- 417 (1080)
T ss_pred cC--------------------CCCCCceEEEcccCCcc-----------------------------------------
Confidence 95 2222 367777776322
Q ss_pred cCchHHHhcCCChhh--hcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCC
Q 005637 513 VESSDLIAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (686)
Q Consensus 513 v~~~dl~~~~f~PEL--l~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~ 590 (686)
.+.|++ .+|||..+.|+-.+.++..+|+..+- ..-.-.++...+.+|++. ..++
T Consensus 418 ---------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Iht-------------rkw~~~i~~~l~~~la~~--t~gy 473 (1080)
T KOG0732|consen 418 ---------AIDPALRRPGRFDREFYFPLPDVDARAKILDIHT-------------RKWEPPISRELLLWLAEE--TSGY 473 (1080)
T ss_pred ---------ccchhhcCCcccceeEeeeCCchHHHHHHHHHhc-------------cCCCCCCCHHHHHHHHHh--cccc
Confidence 123556 57999999999999999999986421 112345788888999985 4555
Q ss_pred ChhHHHHHHHHHHHHHHhcC
Q 005637 591 GARGLRSLLENILMDAMYEI 610 (686)
Q Consensus 591 GAR~Lr~vIe~il~~al~e~ 610 (686)
+...|+.++......++..-
T Consensus 474 ~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 474 GGADLKALCTEAALIALRRS 493 (1080)
T ss_pred chHHHHHHHHHHhhhhhccc
Confidence 55668888888777777543
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.6e-12 Score=143.67 Aligned_cols=186 Identities=22% Similarity=0.263 Sum_probs=121.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.+... +..+||+||||||||++|+++|+.+...
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~-------------------------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999888752110 2469999999999999999999998552
Q ss_pred --------------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 358 --------------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 358 --------------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
++.+++. +..+ -..++++........-.+...|++|||+|
T Consensus 66 ~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~-----~~~~---id~Ir~l~~~~~~~p~~~~~kvvIIdea~ 137 (397)
T PRK14955 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAA-----SNNS---VDDIRLLRENVRYGPQKGRYRVYIIDEVH 137 (397)
T ss_pred CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccc-----ccCC---HHHHHHHHHHHhhchhcCCeEEEEEeChh
Confidence 1111111 1111 12333333332111122456799999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.+... .++.|++.||. ....++||++++. ..+
T Consensus 138 ~l~~~--------------~~~~LLk~LEe---------------------p~~~t~~Il~t~~--~~k----------- 169 (397)
T PRK14955 138 MLSIA--------------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LHK----------- 169 (397)
T ss_pred hCCHH--------------HHHHHHHHHhc---------------------CCCCeEEEEEeCC--hHH-----------
Confidence 99876 88999999982 0112445544431 111
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
+.+.+.+|.. ++.|.+++++++.+.+...++..
T Consensus 170 -------------------------------------l~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~--------- 202 (397)
T PRK14955 170 -------------------------------------IPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAE--------- 202 (397)
T ss_pred -------------------------------------hHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHc---------
Confidence 2244556664 68999999999988877532211
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.+.++++++++|++.+ +...|.+.+.++++..
T Consensus 203 ----g~~i~~~al~~l~~~s---~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 203 ----GISVDADALQLIGRKA---QGSMRDAQSILDQVIA 234 (397)
T ss_pred ----CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 5779999999999974 4457888888887543
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.6e-12 Score=148.89 Aligned_cols=185 Identities=27% Similarity=0.368 Sum_probs=125.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.+++.+..++.... .+..+||+||+|+|||++|+++|+.+..
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-------------------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-------------------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998874110 0256999999999999999999998742
Q ss_pred -----------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 357 -----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
.++.++++ +..|.+ .++.+..........+...|++|||+|.+...
T Consensus 66 ~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----s~igVd---~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--- 134 (605)
T PRK05896 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAA-----SNNGVD---EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--- 134 (605)
T ss_pred CCCCCCCCcccHHHHHHHcCCCCceEEeccc-----cccCHH---HHHHHHHHHHhchhhCCcEEEEEechHhCCHH---
Confidence 12333321 112222 23444332222112245679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++.. .
T Consensus 135 -----------A~NaLLKtLEE---------------------Pp~~tvfIL~Tt~~--~-------------------- 160 (605)
T PRK05896 135 -----------AWNALLKTLEE---------------------PPKHVVFIFATTEF--Q-------------------- 160 (605)
T ss_pred -----------HHHHHHHHHHh---------------------CCCcEEEEEECCCh--H--------------------
Confidence 89999999992 12246666655411 0
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.|.+++|.. ++.|.+++.+++..++...+.. . .+.+
T Consensus 161 ----------------------------KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~k-----------e--gi~I 198 (605)
T PRK05896 161 ----------------------------KIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKK-----------E--KIKI 198 (605)
T ss_pred ----------------------------hhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 13356788876 7999999999999988753221 1 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|++.+ ++..|.+.+.++.+.
T Consensus 199 s~eal~~La~lS---~GdlR~AlnlLekL~ 225 (605)
T PRK05896 199 EDNAIDKIADLA---DGSLRDGLSILDQLS 225 (605)
T ss_pred CHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 999999999874 345788888888754
No 134
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=6.6e-13 Score=142.92 Aligned_cols=145 Identities=30% Similarity=0.409 Sum_probs=103.3
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHH
Q 005637 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (686)
Q Consensus 267 t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~L 346 (686)
....+...+.+.++|+++++..+..++. ...++||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 3445777888889999999998888774 137999999999999999
Q ss_pred HHHHHHhcCCCEEEEecc-cccccCcccccHHHHH---HHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 347 AKTLARYVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 347 AraLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l---~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
|+.+|+.++.+|+.+.|+ ++.+...+|....... ...+.-.++.+-.+..+|+|+|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 999999999999999998 4444445554422221 111111122222222269999999999988
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCC
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn 468 (686)
+|++||.+|+++.+++++.+... -...+++|+|+|
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~~~~---------~~~~f~viaT~N 162 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLTTIR---------LPPPFIVIATQN 162 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcCCcC---------CCCCCEEEEccC
Confidence 99999999998888876555211 112366777767
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=3.5e-12 Score=135.67 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=124.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++||+++++.+...+... ..+..+||+||||+|||++|+++++.++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~-------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 23 CILPAADKETFKSIVKKG-------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred hcCcHHHHHHHHHHHhcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 699999999998887410 0124566699999999999999999998888
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.+++++ . . +. .....+.......+. .+.+.||+|||+|.+... ..++.|..+|+.
T Consensus 72 ~~i~~~~-~--~-~~-~i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~--- 127 (316)
T PHA02544 72 LFVNGSD-C--R-ID-FVRNRLTRFASTVSL---TGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEA--- 127 (316)
T ss_pred eEeccCc-c--c-HH-HHHHHHHHHHHhhcc---cCCCeEEEEECcccccCH-------------HHHHHHHHHHHh---
Confidence 8888865 1 1 11 011112222111111 135689999999998332 167788888882
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
...++.||++++...
T Consensus 128 ------------------~~~~~~~Ilt~n~~~----------------------------------------------- 142 (316)
T PHA02544 128 ------------------YSKNCSFIITANNKN----------------------------------------------- 142 (316)
T ss_pred ------------------cCCCceEEEEcCChh-----------------------------------------------
Confidence 012356777765210
Q ss_pred HhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHH
Q 005637 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (686)
Q Consensus 519 ~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~v 598 (686)
.+.|.+++|+. ++.|+.++.++..+++...+..+ ...+... .+.++++++.++++..+ .+.|.+-+.
T Consensus 143 ---~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~----~~~~~~~--~~~i~~~al~~l~~~~~---~d~r~~l~~ 209 (316)
T PHA02544 143 ---GIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRC----KGILEAE--GVEVDMKVLAALVKKNF---PDFRRTINE 209 (316)
T ss_pred ---hchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHH----HHHHHhc--CCCCCHHHHHHHHHhcC---CCHHHHHHH
Confidence 14477888996 68899999999988887643333 3323333 55679999999998743 345666666
Q ss_pred HHHH
Q 005637 599 LENI 602 (686)
Q Consensus 599 Ie~i 602 (686)
++..
T Consensus 210 l~~~ 213 (316)
T PHA02544 210 LQRY 213 (316)
T ss_pred HHHH
Confidence 6643
No 136
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.44 E-value=2.3e-12 Score=138.85 Aligned_cols=186 Identities=27% Similarity=0.378 Sum_probs=122.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++||+++++.+..++.... .+..+||+||||+|||++|+++|+.+..+
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-------------------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-------------------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998885110 12568999999999999999999887432
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++... ..+ -..++.++.........+...|++|||+|.+...
T Consensus 64 ~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--- 132 (355)
T TIGR02397 64 NGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----NNG---VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--- 132 (355)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---
Confidence 22232221 111 1223344333222112245579999999999766
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.||+.+|. ...+++||++++. +++
T Consensus 133 -----------~~~~Ll~~le~---------------------~~~~~~lIl~~~~--~~~------------------- 159 (355)
T TIGR02397 133 -----------AFNALLKTLEE---------------------PPEHVVFILATTE--PHK------------------- 159 (355)
T ss_pred -----------HHHHHHHHHhC---------------------CccceeEEEEeCC--HHH-------------------
Confidence 89999999982 1123556655441 111
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
+.+.+.+|+. .+.|.+++.+++.+++...+.. . .+.+
T Consensus 160 -----------------------------l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~-----------~--g~~i 196 (355)
T TIGR02397 160 -----------------------------IPATILSRCQ-RFDFKRIPLEDIVERLKKILDK-----------E--GIKI 196 (355)
T ss_pred -----------------------------HHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 1244666764 7899999999999988763322 2 4578
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++++|++.. +.+.|.+.+.++++..
T Consensus 197 ~~~a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 197 EDEALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred CHHHHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 999999999863 3456888888877654
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.9e-12 Score=148.51 Aligned_cols=185 Identities=21% Similarity=0.297 Sum_probs=125.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.+.. -+..+||+||+|+|||++|+++|+.++..
T Consensus 17 diiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 37999999999998885110 02569999999999999999999998542
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.+++.. ..+ -..++.+..........+...|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--- 134 (563)
T PRK06647 66 NGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--- 134 (563)
T ss_pred cCCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH---
Confidence 22222211 011 1223333322221112345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++- +.
T Consensus 135 -----------a~naLLK~LEe---------------------pp~~~vfI~~tte--~~-------------------- 160 (563)
T PRK06647 135 -----------AFNALLKTIEE---------------------PPPYIVFIFATTE--VH-------------------- 160 (563)
T ss_pred -----------HHHHHHHhhcc---------------------CCCCEEEEEecCC--hH--------------------
Confidence 89999999982 1234677776541 10
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+++|.. ++.|.+++.+++.+++...+.. . .+.+
T Consensus 161 ----------------------------kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~-----------e--gi~i 198 (563)
T PRK06647 161 ----------------------------KLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLE-----------D--QIKY 198 (563)
T ss_pred ----------------------------HhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 13356778876 6899999999998888653211 1 5678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+++++.+|++.+ +...|.+.+.++.++
T Consensus 199 d~eAl~lLa~~s---~GdlR~alslLdkli 225 (563)
T PRK06647 199 EDEALKWIAYKS---TGSVRDAYTLFDQVV 225 (563)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999963 345788888888764
No 138
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.8e-12 Score=138.73 Aligned_cols=190 Identities=25% Similarity=0.338 Sum_probs=124.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+||+.+++.+...+.+.. .+.++||+||||+|||++|+++|+.+..+.
T Consensus 19 iig~~~~~~~l~~~i~~~~-------------------------------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNH-------------------------------LAQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred cCCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6999999999998885110 126899999999999999999999875421
Q ss_pred EEE-------ecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005637 359 VIA-------DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (686)
Q Consensus 359 v~v-------~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (686)
... +..++......+ ...++.++..+......+...||+|||+|.+... .++.|++
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~ 130 (367)
T PRK14970 68 YDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLK 130 (367)
T ss_pred CCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHH
Confidence 110 000111111111 1234444433211111234579999999998766 7899999
Q ss_pred HHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 432 lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
.|+. ...+++||++++..
T Consensus 131 ~le~---------------------~~~~~~~Il~~~~~----------------------------------------- 148 (367)
T PRK14970 131 TLEE---------------------PPAHAIFILATTEK----------------------------------------- 148 (367)
T ss_pred HHhC---------------------CCCceEEEEEeCCc-----------------------------------------
Confidence 9982 11234555554411
Q ss_pred hcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCC
Q 005637 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~G 591 (686)
..+.|.+.+|.. ++.|.+++++++..++...+.. . .+.++++++++|++.+ +.+
T Consensus 149 ---------~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~-----------~--g~~i~~~al~~l~~~~---~gd 202 (367)
T PRK14970 149 ---------HKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVK-----------E--GIKFEDDALHIIAQKA---DGA 202 (367)
T ss_pred ---------ccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHhC---CCC
Confidence 013466777775 6899999999999888753221 1 5679999999999963 356
Q ss_pred hhHHHHHHHHHHH
Q 005637 592 ARGLRSLLENILM 604 (686)
Q Consensus 592 AR~Lr~vIe~il~ 604 (686)
.|.+.+.+++++.
T Consensus 203 lr~~~~~lekl~~ 215 (367)
T PRK14970 203 LRDALSIFDRVVT 215 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 7889998888764
No 139
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=5.7e-12 Score=142.53 Aligned_cols=187 Identities=22% Similarity=0.313 Sum_probs=121.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++|++++++.|...+..+.. + .++.++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~------------g----------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK------------G----------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc------------C----------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 79999999999998853221 0 0137899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchh--hHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYN--VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~--ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
+.+++++... ...+..+...+... +......+|+|||+|.+..... .+.+++|+++++.
T Consensus 68 ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----------~~~~~aL~~~l~~- 128 (482)
T PRK04195 68 IELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----------RGGARAILELIKK- 128 (482)
T ss_pred EEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----------hhHHHHHHHHHHc-
Confidence 9999876531 11222222211100 0002467999999999875311 1267889998871
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. +..+|+++|...
T Consensus 129 ---------------------~-~~~iIli~n~~~--------------------------------------------- 141 (482)
T PRK04195 129 ---------------------A-KQPIILTANDPY--------------------------------------------- 141 (482)
T ss_pred ---------------------C-CCCEEEeccCcc---------------------------------------------
Confidence 0 122344444110
Q ss_pred HHHhcCCCh-hhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 517 DLIAYGLIP-EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 517 dl~~~~f~P-ELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
...+ .+++|. ..|.|.+++.+++..++...+.. . .+.+++++++.|++.+ +...|.+
T Consensus 142 -----~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~-----------e--gi~i~~eaL~~Ia~~s---~GDlR~a 199 (482)
T PRK04195 142 -----DPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK-----------E--GIECDDEALKEIAERS---GGDLRSA 199 (482)
T ss_pred -----ccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCHHHH
Confidence 0112 344444 47999999999999988763321 1 5678999999999973 3334555
Q ss_pred HHHHHH
Q 005637 596 RSLLEN 601 (686)
Q Consensus 596 r~vIe~ 601 (686)
-+.++.
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 554544
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=1.9e-12 Score=152.80 Aligned_cols=190 Identities=22% Similarity=0.335 Sum_probs=129.3
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
+++. ++|.+..++.+.+.+... .+.++||+||||||||++|+++|..
T Consensus 184 ~~~~-liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 184 GIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCc-CcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 4444 799999999999887510 1268999999999999999999976
Q ss_pred c----------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
+ +..++.++.+.+.. ..|.|+- +..+..++... ....++||||||||.+...+...+ ..
T Consensus 231 i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~~~-----g~ 300 (758)
T PRK11034 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAASG-----GQ 300 (758)
T ss_pred HHhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCCCC-----cH
Confidence 4 33455555554432 3466654 55566665532 234678999999999976532111 12
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
..+.+.|..+++ . ..+.+|.+++..+..+.+.
T Consensus 301 ~d~~nlLkp~L~--------~---------------g~i~vIgATt~~E~~~~~~------------------------- 332 (758)
T PRK11034 301 VDAANLIKPLLS--------S---------------GKIRVIGSTTYQEFSNIFE------------------------- 332 (758)
T ss_pred HHHHHHHHHHHh--------C---------------CCeEEEecCChHHHHHHhh-------------------------
Confidence 236666777776 1 1367788887543222211
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
..|.|.+||. .|.+++++.++..+|++. +..+|+. ...+.++++|++.++
T Consensus 333 --------------------~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~~~~ye~-----~h~v~i~~~al~~a~ 382 (758)
T PRK11034 333 --------------------KDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEA-----HHDVRYTAKAVRAAV 382 (758)
T ss_pred --------------------ccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHhhh-----ccCCCcCHHHHHHHH
Confidence 3478999996 799999999999999986 3344433 236788999998877
Q ss_pred Hh
Q 005637 583 KK 584 (686)
Q Consensus 583 ~~ 584 (686)
+.
T Consensus 383 ~l 384 (758)
T PRK11034 383 EL 384 (758)
T ss_pred HH
Confidence 65
No 141
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.5e-12 Score=143.49 Aligned_cols=114 Identities=23% Similarity=0.331 Sum_probs=72.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+++++.|..++...... .+... . ..+..+||+||||+|||++|+++|+.+...
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~----------~~~~~-----------~-~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD----------VAAAG-----------S-GMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc----------ccccC-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999999622110 00000 0 013679999999999999999999877432
Q ss_pred -----------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
+..+.... ..++. ..+++++.........+...|+||||+|++...
T Consensus 64 ~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~i~i---~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---- 132 (394)
T PRK07940 64 DPDEPGCGECRACRTVLAGTHPDVRVVAPEG----LSIGV---DEVRELVTIAARRPSTGRWRIVVIEDADRLTER---- 132 (394)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEecccc----ccCCH---HHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----
Confidence 11111110 11121 234555543322222345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHh
Q 005637 415 NISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLE 434 (686)
.+++||+.||
T Consensus 133 ----------aanaLLk~LE 142 (394)
T PRK07940 133 ----------AANALLKAVE 142 (394)
T ss_pred ----------HHHHHHHHhh
Confidence 8899999998
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4e-12 Score=147.39 Aligned_cols=184 Identities=25% Similarity=0.382 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++||+.+++.|..++.... -..++||+||+|+|||++|+++|+.++..
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 37999999999998885210 02589999999999999999999998642
Q ss_pred --------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhc
Q 005637 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 358 --------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r 411 (686)
++.++.. ...+ -..+++++..+......+...|++|||+|+|...
T Consensus 66 ~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~-----~~~~---vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~- 136 (620)
T PRK14948 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA-----SNTG---VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA- 136 (620)
T ss_pred CcCCCCCCCCcccHHHHHHhcCCCccEEEEecc-----ccCC---HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-
Confidence 1122211 1111 2345555544332222345579999999999876
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccc
Q 005637 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (686)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~ 491 (686)
.+++||+.||. ...+++||++++.. +
T Consensus 137 -------------a~naLLK~LEe---------------------Pp~~tvfIL~t~~~--~------------------ 162 (620)
T PRK14948 137 -------------AFNALLKTLEE---------------------PPPRVVFVLATTDP--Q------------------ 162 (620)
T ss_pred -------------HHHHHHHHHhc---------------------CCcCeEEEEEeCCh--h------------------
Confidence 89999999992 12236677665411 0
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcc
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l 571 (686)
.+.|.+++|.. .+.|.+++.+++.+.+...+.+ . .+
T Consensus 163 ------------------------------~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~k-----------e--gi 198 (620)
T PRK14948 163 ------------------------------RVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAEK-----------E--SI 198 (620)
T ss_pred ------------------------------hhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHH-----------h--CC
Confidence 13366788875 6899999999888777642211 1 56
Q ss_pred ccCHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 005637 572 HFTENALRLIAKKAISKNTGARGLRSLLENI 602 (686)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~i 602 (686)
.++++++..|++.+ +++.|.+.+.++.+
T Consensus 199 ~is~~al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 199 EIEPEALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 78999999999873 45568888888764
No 143
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.42 E-value=1.9e-12 Score=152.80 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=94.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
|...+...|+|.+.+|+.|.-++...-.+ ....+ ..+.+.....--....||||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~~k-------~~~~~----~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGNKN-------SSDFN----KSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCCcc-------ccccc----cccccccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 44555667999999999987777422110 00000 00000000000122369999999999999999999
Q ss_pred HHhcC-------CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchH
Q 005637 351 ARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 351 A~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
++... .++..++++.... +.+.. ... +....+.+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~----tG~-~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESD----NGR-AMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccc----cCc-ccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 98653 3444444433210 00000 000 111233455678899999999999887
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcc
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~ 470 (686)
.|.+|+++||...++|...|... . -..++.+|+|+|+.
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~-------t-L~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVA-------T-LKAETAILASCNPI 610 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcce-------e-cCCCeEEEEEcCCc
Confidence 99999999997666654444222 1 22457888888854
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=1.4e-12 Score=139.76 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=108.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-cCcccccHH-----HHHHHHHhhcchhhHhhcCcEEEEccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVE-----SILYKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-sgyvG~~~~-----~~l~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
+++||.||||||||++|+.+|+.++.+++.++++.... ..++|...- .... .|...+.......+++|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 68999999999999999999999999999999986543 345665311 0000 1111111112235677999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccC
Q 005637 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
+++.++ ++..|+.+|| ++.+.+++.+.... ...++.+|+|.|..+.-+ ..
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~--------~hp~FrviAT~Np~g~Gd-------~~ 194 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIR--------AHPAFRLFATANTIGLGD-------TT 194 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEec--------CCCCeEEEEeeCCCCcCC-------CC
Confidence 999887 9999999999 66777765543221 223688999988532100 00
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+ |.. .+.+.+.+++||-.++.+..++.++-.+|+..
T Consensus 195 G~-y~G------------------------------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 195 GL-YHG------------------------------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred cc-eee------------------------------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 00 000 01256789999998888999999998888865
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=2.4e-12 Score=154.08 Aligned_cols=190 Identities=25% Similarity=0.330 Sum_probs=133.2
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.++. |+|.++.++.+.+.+... .+.+++|+||||||||++|+.+|..
T Consensus 177 ~~~~-~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 177 NLDP-VIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCC-CCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444 899999999999888511 1378999999999999999999987
Q ss_pred c----------CCCEEEEeccccc-ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 l----------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
+ +.+++.+|++.+. ...|.|+- +..+..++.... ...+.||||||||.+...+.. .++.
T Consensus 224 i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~----~~~~~ILfiDEih~l~~~g~~-~g~~---- 293 (821)
T CHL00095 224 IVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQ----ENNNIILVIDEVHTLIGAGAA-EGAI---- 293 (821)
T ss_pred HHhCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHH----hcCCeEEEEecHHHHhcCCCC-CCcc----
Confidence 6 3679999998765 35677765 667777776542 235679999999999875322 1111
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
.+.+.|...|.. | .+.+|++++..+..+.+.
T Consensus 294 -~~a~lLkp~l~r--------g---------------~l~~IgaTt~~ey~~~ie------------------------- 324 (821)
T CHL00095 294 -DAANILKPALAR--------G---------------ELQCIGATTLDEYRKHIE------------------------- 324 (821)
T ss_pred -cHHHHhHHHHhC--------C---------------CcEEEEeCCHHHHHHHHh-------------------------
Confidence 277777777771 1 256677777433222211
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
..|.|..||. .|.+..++.++...|++. +..+|.+.. .+.++++++..++
T Consensus 325 --------------------~D~aL~rRf~-~I~v~ep~~~e~~aILr~----l~~~~e~~~-----~v~i~deal~~i~ 374 (821)
T CHL00095 325 --------------------KDPALERRFQ-PVYVGEPSVEETIEILFG----LRSRYEKHH-----NLSISDKALEAAA 374 (821)
T ss_pred --------------------cCHHHHhcce-EEecCCCCHHHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHHH
Confidence 2377888997 578888999999999875 444444322 3448999999888
Q ss_pred Hhc
Q 005637 583 KKA 585 (686)
Q Consensus 583 ~~a 585 (686)
+.+
T Consensus 375 ~ls 377 (821)
T CHL00095 375 KLS 377 (821)
T ss_pred HHh
Confidence 763
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.1e-12 Score=146.66 Aligned_cols=191 Identities=26% Similarity=0.306 Sum_probs=126.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... .+..+||+||+|+|||++|+++|+.++..
T Consensus 25 dliGq~~~v~~L~~~~~~gr-------------------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-------------------------------IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 37999999999998875110 12579999999999999999999988643
Q ss_pred EEEEe-------------cc-----------cccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 FVIAD-------------AT-----------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 fv~v~-------------~s-----------~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
....+ |. ++......|.+ .+++++.........+...|++|||+|.+...
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd---~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--- 147 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVD---DIREIIESVRYRPVSARYKVYIIDEVHMLSTA--- 147 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHH---HHHHHHHHHHhchhcCCcEEEEEEChHhCCHH---
Confidence 21111 00 00011222322 34444433322222356689999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ....++||++++.. ++
T Consensus 148 -----------a~naLLKtLEe---------------------Pp~~~~fIl~tte~--~k------------------- 174 (598)
T PRK09111 148 -----------AFNALLKTLEE---------------------PPPHVKFIFATTEI--RK------------------- 174 (598)
T ss_pred -----------HHHHHHHHHHh---------------------CCCCeEEEEEeCCh--hh-------------------
Confidence 89999999982 11235566654411 11
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
+.+.+++|.. ++.|.+++.+++.+.+...+.. . .+.+
T Consensus 175 -----------------------------ll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~k-----------e--gi~i 211 (598)
T PRK09111 175 -----------------------------VPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAK-----------E--GVEV 211 (598)
T ss_pred -----------------------------hhHHHHhhee-EEEecCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 2244677774 7999999999999988763221 1 5778
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++++|++.+ ++..|.+.+.++.++.
T Consensus 212 ~~eAl~lIa~~a---~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 212 EDEALALIARAA---EGSVRDGLSLLDQAIA 239 (598)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 999999999974 4557888888887653
No 147
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=8e-12 Score=141.33 Aligned_cols=185 Identities=29% Similarity=0.374 Sum_probs=122.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.+.. .+..+||+||+|+|||++|+.+|+.++..
T Consensus 17 diiGq~~i~~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-------------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999998885110 01457899999999999999999987531
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++++ ...|.+.-..+.+.....+. .+...|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa-----s~~gvd~ir~I~~~~~~~P~---~~~~KVvIIDEad~Lt~~--- 134 (486)
T PRK14953 66 NPQEGEPCGKCENCVEIDKGSFPDLIEIDAA-----SNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKE--- 134 (486)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCcEEEEeCc-----cCCCHHHHHHHHHHHHhCcc---cCCeeEEEEEChhhcCHH---
Confidence 2222221 11232212223333332222 356689999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ....++||++++. +++
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~v~Il~tt~--~~k------------------- 161 (486)
T PRK14953 135 -----------AFNALLKTLEE---------------------PPPRTIFILCTTE--YDK------------------- 161 (486)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCeEEEEEECC--HHH-------------------
Confidence 88999999982 1123455555431 111
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
+.+.+.+|.. ++.|.+++.+++.+++...+.. . .+.+
T Consensus 162 -----------------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~-----------e--gi~i 198 (486)
T PRK14953 162 -----------------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNE-----------E--KIEY 198 (486)
T ss_pred -----------------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 1234666765 7999999999999888753221 2 4678
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
+++++++|++.+ +++.|.+.+.++.++
T Consensus 199 d~~al~~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 199 EEKALDLLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999863 455788888888765
No 148
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.40 E-value=6.1e-12 Score=127.94 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=110.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||+|||||+||+++++.+ +.+++.+++.++.. . + .. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------~-~----~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------A-F----DF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------H-H----hh------cccCCEEEEeChhhc
Confidence 689999999999999999998875 56788888866531 0 0 00 123479999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
... .+..|+.+++... .....++|++++...
T Consensus 103 ~~~--------------~~~~L~~~~~~~~-------------------~~~~~~vl~~~~~~~---------------- 133 (227)
T PRK08903 103 DDA--------------QQIALFNLFNRVR-------------------AHGQGALLVAGPAAP---------------- 133 (227)
T ss_pred Cch--------------HHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCH----------------
Confidence 655 6778888886210 011233444544110
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
....+.+++++|+ ...+.++++++++...++.+.. .+
T Consensus 134 -------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~----~~------ 172 (227)
T PRK08903 134 -------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA----AE------ 172 (227)
T ss_pred -------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH----HH------
Confidence 0011447788898 4689999999988877776421 11
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~a 606 (686)
. .+.++++++++|++. |..+.|+|+++++.+-..+
T Consensus 173 -~--~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 173 -R--GLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred -c--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHH
Confidence 1 588999999999994 4555699999999865444
No 149
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.4e-12 Score=144.50 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=149.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.+.|.......+.+.+..+......... . -..+++++|++||||||||.+++++|++.+..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s----~---------------g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~ 245 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKS----I---------------GIKPPRGLLLYGPPGTGKTFLVRAVANEYGAF 245 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhh----c---------------CCCCCCCccccCCCCCChHHHHHHHHHHhCce
Confidence 4688888889898888744432111100 0 01235899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
++.+++.++. .+|-|+. ++.+++.|+.+... +.|+||||||+|.+.+++..... + ..++..+|+.+|+|-.
T Consensus 246 ~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k~---~~psii~IdEld~l~p~r~~~~~---~-e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 246 LFLINGPELI-SKFPGET-ESNLRKAFAEALKF---QVPSIIFIDELDALCPKREGADD---V-ESRVVSQLLTLLDGLK 316 (693)
T ss_pred eEecccHHHH-Hhcccch-HHHHHHHHHHHhcc---CCCeeEeHHhHhhhCCcccccch---H-HHHHHHHHHHHHhhCc
Confidence 9999999998 6788888 78899999887542 22899999999999998654321 2 2349999999999411
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|.++|..+
T Consensus 317 -------------------~~~~vivl~atnrp~---------------------------------------------- 331 (693)
T KOG0730|consen 317 -------------------PDAKVIVLAATNRPD---------------------------------------------- 331 (693)
T ss_pred -------------------CcCcEEEEEecCCcc----------------------------------------------
Confidence 124577777766321
Q ss_pred HHhcCCChhhh-cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 518 LIAYGLIPEFV-GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 518 l~~~~f~PELl-~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.++ +|||.-+.+.-++..+..+|++...+. +.+. ++..+..++.. .....| ..|.
T Consensus 332 ----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~-------------~~~~-~~~~l~~iA~~-thGyvG-aDL~ 391 (693)
T KOG0730|consen 332 ----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK-------------MNLL-SDVDLEDIAVS-THGYVG-ADLA 391 (693)
T ss_pred ----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh-------------cCCc-chhhHHHHHHH-ccchhH-HHHH
Confidence 1446677 599999999999999888888752211 1222 56667777775 233333 4555
Q ss_pred HHHHHHHH
Q 005637 597 SLLENILM 604 (686)
Q Consensus 597 ~vIe~il~ 604 (686)
.++.....
T Consensus 392 ~l~~ea~~ 399 (693)
T KOG0730|consen 392 ALCREASL 399 (693)
T ss_pred HHHHHHHH
Confidence 55444433
No 150
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.3e-12 Score=147.27 Aligned_cols=191 Identities=27% Similarity=0.349 Sum_probs=138.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.+... ....||.||-|||||++||.+|+.+++.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 479999999999999963211 2678999999999999999999998643
Q ss_pred -------EEEE-ecccc-----------cccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCC
Q 005637 358 -------FVIA-DATTL-----------TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (686)
Q Consensus 358 -------fv~v-~~s~l-----------~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (686)
...+ .|-++ ..+.-.|.+ .++++.+...+....+..-|++|||+|.|+..
T Consensus 66 ~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd---diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD---DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred CCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH---HHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 1110 01111 112223333 35566665555555677889999999999988
Q ss_pred CCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005637 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (686)
Q Consensus 419 d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~ 498 (686)
..++||+.||. ...+++||++++-.
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe~---------------------------- 159 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTEP---------------------------- 159 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCCc----------------------------
Confidence 99999999982 45679999987721
Q ss_pred CCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH
Q 005637 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (686)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl 578 (686)
. .+++-.++|.. .+.|..++.+++..-+...+.. -.+.++++|+
T Consensus 160 ----~------------------Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~-------------E~I~~e~~aL 203 (515)
T COG2812 160 ----Q------------------KIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDK-------------EGINIEEDAL 203 (515)
T ss_pred ----C------------------cCchhhhhccc-cccccCCCHHHHHHHHHHHHHh-------------cCCccCHHHH
Confidence 1 13455666665 6889999999988877764322 1788999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 579 RLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
..|++.+ .++.|...+++..++.
T Consensus 204 ~~ia~~a---~Gs~RDalslLDq~i~ 226 (515)
T COG2812 204 SLIARAA---EGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHc---CCChhhHHHHHHHHHH
Confidence 9999974 6667999888887655
No 151
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.5e-12 Score=144.37 Aligned_cols=191 Identities=20% Similarity=0.272 Sum_probs=122.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.+... +..+||+||+|||||++|+++|+.+...
T Consensus 17 eivGQe~i~~~L~~~i~~~ri-------------------------------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999888751100 2569999999999999999999998652
Q ss_pred EEE----------Eecc-----------------cccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 358 FVI----------ADAT-----------------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 358 fv~----------v~~s-----------------~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
-.. -.|. .+......+. ..++.+..........+..-|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~v---d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~ 142 (620)
T PRK14954 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSV---DDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA 142 (620)
T ss_pred CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCH---HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH
Confidence 100 0010 0100111111 233344333211112345679999999999876
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
.+++||+.||. ....++||++++. ..
T Consensus 143 --------------a~naLLK~LEe---------------------Pp~~tv~IL~t~~--~~----------------- 168 (620)
T PRK14954 143 --------------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LH----------------- 168 (620)
T ss_pred --------------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hh-----------------
Confidence 89999999992 1123555554431 00
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
.+.+.+.+|.. ++.|.+++.+++...+...+.. . .
T Consensus 169 -------------------------------kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~-----------e--g 203 (620)
T PRK14954 169 -------------------------------KIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRA-----------E--G 203 (620)
T ss_pred -------------------------------hhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHH-----------c--C
Confidence 12345666764 8999999999998887653221 1 5
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.++++++++|++.+ +++.|.+.+.+++++.
T Consensus 204 i~I~~eal~~La~~s---~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 204 IQIDADALQLIARKA---QGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 678999999999974 4557888888887653
No 152
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.7e-12 Score=145.08 Aligned_cols=186 Identities=25% Similarity=0.315 Sum_probs=121.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... -+..+||+||+|+|||++|+++|+.++..
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-------------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-------------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999988875110 02467999999999999999999987531
Q ss_pred -------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc
Q 005637 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 358 -------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
++.++.+ ...+.+ .++++..........+...||+|||+|.|..+
T Consensus 66 ~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~vd---~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-- 135 (585)
T PRK14950 66 TNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTSVD---DAREIIERVQFRPALARYKVYIIDEVHMLSTA-- 135 (585)
T ss_pred CCCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCCHH---HHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--
Confidence 1122211 122222 23333322211111245679999999999876
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccc
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~ 492 (686)
.++.||+.||. ...+++||++++. +++
T Consensus 136 ------------a~naLLk~LEe---------------------pp~~tv~Il~t~~--~~k------------------ 162 (585)
T PRK14950 136 ------------AFNALLKTLEE---------------------PPPHAIFILATTE--VHK------------------ 162 (585)
T ss_pred ------------HHHHHHHHHhc---------------------CCCCeEEEEEeCC--hhh------------------
Confidence 89999999982 1123556655431 111
Q ss_pred cccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccc
Q 005637 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (686)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~ 572 (686)
+.+.+.+|.. ++.|.+++.+++.+++...+.. . .+.
T Consensus 163 ------------------------------ll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~-----------e--gl~ 198 (585)
T PRK14950 163 ------------------------------VPATILSRCQ-RFDFHRHSVADMAAHLRKIAAA-----------E--GIN 198 (585)
T ss_pred ------------------------------hhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHH-----------c--CCC
Confidence 2244566665 6889999999999888653221 1 567
Q ss_pred cCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 573 FTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 573 ~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
++++++.+|++.+ ++..|.+.+.++++..
T Consensus 199 i~~eal~~La~~s---~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 199 LEPGALEAIARAA---TGSMRDAENLLQQLAT 227 (585)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8999999999863 3457888888887643
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.38 E-value=9e-12 Score=139.32 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=136.6
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHH
Q 005637 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (686)
Q Consensus 269 ~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (686)
..+.+.|.+.|+|++++++.+..++. ...++||+||||||||++|+
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHHH
Confidence 45888999999999999999988874 13799999999999999999
Q ss_pred HHHHhcCC--CEEEEecccccccCccccc-HHHHH-HHHHh-hcchhhHhhcCcEEEEccccccchhccccccCCCCchH
Q 005637 349 TLARYVNV--PFVIADATTLTQAGYVGED-VESIL-YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 349 aLA~~l~~--pfv~v~~s~l~~sgyvG~~-~~~~l-~~l~~-~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
++++.++. +|....+.-.+++..+|.. ....- ...+. ...+.+..+ .+||+|||.+++++
T Consensus 58 aLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~------------- 122 (498)
T PRK13531 58 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPA------------- 122 (498)
T ss_pred HHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccc--cEEeecccccCCHH-------------
Confidence 99997743 5554444311223344421 00000 00111 111112122 38999999999988
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~ 503 (686)
+|++||.+|+.+.+++ .++. ......++++|+| +|.+
T Consensus 123 -~QsaLLeam~Er~~t~---------g~~~--~~lp~rfiv~ATN--~LPE----------------------------- 159 (498)
T PRK13531 123 -ILNTLLTAINERRFRN---------GAHE--EKIPMRLLVTASN--ELPE----------------------------- 159 (498)
T ss_pred -HHHHHHHHHHhCeEec---------CCeE--EeCCCcEEEEECC--CCcc-----------------------------
Confidence 9999999998666553 1222 2222333444444 1111
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcC-hHHHHHHHhhhHHH----------H-HHHHHHHHhhcCCcc
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNA----------L-GKQYRKMFQMNGVKL 571 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs-~eeL~~IL~~~l~~----------L-~kq~~~~~~~~gv~l 571 (686)
...+.++++.||-..+.+++++ .++..+|+...... + ..++... ...-..+
T Consensus 160 ----------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~l-q~~v~~V 222 (498)
T PRK13531 160 ----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQW-QKEIGKI 222 (498)
T ss_pred ----------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHH-HHHhcce
Confidence 0124567888886678888886 45556666531100 0 0111111 1111256
Q ss_pred ccCHHHHHHHHHhcC----C---CCCChhHHHHHHHHHHHHHHhc
Q 005637 572 HFTENALRLIAKKAI----S---KNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 572 ~~s~eAl~~La~~a~----~---~~~GAR~Lr~vIe~il~~al~e 609 (686)
.+++.++++|.+..- . ....-|....++.-+=..|+.+
T Consensus 223 ~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~ 267 (498)
T PRK13531 223 TLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFS 267 (498)
T ss_pred eCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHC
Confidence 789999998887632 1 1244577776666544444443
No 154
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.6e-12 Score=138.26 Aligned_cols=193 Identities=21% Similarity=0.311 Sum_probs=130.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
|-+|+|||||||||||+.||-||+..|..+..+...++.+.|--+. ..+.++|.=+. ....+-+|||||+|.+.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV---TkiH~lFDWak---kS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV---TKIHKLFDWAK---KSRRGLLLFIDEADAFL 456 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH---HHHHHHHHHHh---hcccceEEEehhhHHHH
Confidence 3489999999999999999999999999999999999886553332 34555554322 22345578999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcC
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~ 488 (686)
.+|.....+.+ .-.+|-.+|-. .| . ..+.+++++++|-.+
T Consensus 457 ceRnktymSEa-----qRsaLNAlLfR-------TG----d-------qSrdivLvlAtNrpg----------------- 496 (630)
T KOG0742|consen 457 CERNKTYMSEA-----QRSALNALLFR-------TG----D-------QSRDIVLVLATNRPG----------------- 496 (630)
T ss_pred HHhchhhhcHH-----HHHHHHHHHHH-------hc----c-------cccceEEEeccCCcc-----------------
Confidence 99876443333 44444444430 11 1 123477777777321
Q ss_pred cccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHH---------H
Q 005637 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK---------Q 559 (686)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~k---------q 559 (686)
.|.-..-.|||.+|.|+-+.++|..+++..+++..+. .
T Consensus 497 ---------------------------------dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~ 543 (630)
T KOG0742|consen 497 ---------------------------------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGK 543 (630)
T ss_pred ---------------------------------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCch
Confidence 0223355789999999999999999999998887652 2
Q ss_pred HHHHHhhcCCcccc----CHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 005637 560 YRKMFQMNGVKLHF----TENALRLIAKKAISKNTGARGLRSLLENI 602 (686)
Q Consensus 560 ~~~~~~~~gv~l~~----s~eAl~~La~~a~~~~~GAR~Lr~vIe~i 602 (686)
+..+|+....++.+ ++..+...+++ +.++..|+|..++-..
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~v 588 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVASV 588 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHHH
Confidence 33344433334443 45556666664 6777789999988764
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.37 E-value=5e-12 Score=151.69 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=116.0
Q ss_pred HhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 273 ~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..|+. |+|+++.++.+.+.+... .+.+++|+||||||||++|+++|.
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhcC--------------------------------CcCceEEECCCCCCHHHHHHHHHH
Confidence 34554 899999988888877511 126899999999999999999998
Q ss_pred hc----------CCCEEEEeccccc-ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCc
Q 005637 353 YV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (686)
Q Consensus 353 ~l----------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~ 421 (686)
.+ +.+++.++++.+. ...|.|+- +..+..++..... ...+.||||||||.+...+.. .++.|
T Consensus 222 ~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~-~~~~d-- 294 (857)
T PRK10865 222 RIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA-DGAMD-- 294 (857)
T ss_pred HhhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCC-ccchh--
Confidence 87 6788888888764 24577765 5667776654211 135679999999999865321 12223
Q ss_pred hHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005637 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (686)
Q Consensus 422 ~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~ 501 (686)
+++.|+..|+ .| .+.+|.+++..+..+.+
T Consensus 295 ---~~~~lkp~l~--------~g---------------~l~~IgaTt~~e~r~~~------------------------- 323 (857)
T PRK10865 295 ---AGNMLKPALA--------RG---------------ELHCVGATTLDEYRQYI------------------------- 323 (857)
T ss_pred ---HHHHhcchhh--------cC---------------CCeEEEcCCCHHHHHHh-------------------------
Confidence 7888888876 11 36778887754321111
Q ss_pred hhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
+ ..|+|.+||+. |.+..++.++...|++.
T Consensus 324 ------------~--------~d~al~rRf~~-i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 ------------E--------KDAALERRFQK-VFVAEPSVEDTIAILRG 352 (857)
T ss_pred ------------h--------hcHHHHhhCCE-EEeCCCCHHHHHHHHHH
Confidence 1 34889999985 55666688999988864
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=143.52 Aligned_cols=185 Identities=24% Similarity=0.313 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.+++.|..++.+.. -+..+||+||+|+|||++|+++|+.+.+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998885110 0245899999999999999999998752
Q ss_pred ------------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc
Q 005637 357 ------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 357 ------------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
.++.+++.+ ..+ -..++.+...+......+..-|++|||+|.+...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-----~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAAS-----NNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 122333221 111 1234444432221111245579999999999876
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccc
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~ 492 (686)
.+++||+.||. ...+++||++++..
T Consensus 137 ------------a~naLLK~LEe---------------------pp~~tifIL~tt~~---------------------- 161 (614)
T PRK14971 137 ------------AFNAFLKTLEE---------------------PPSYAIFILATTEK---------------------- 161 (614)
T ss_pred ------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCc----------------------
Confidence 89999999992 12236666665411
Q ss_pred cccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccc
Q 005637 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (686)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~ 572 (686)
..+.|.+++|.. ++.|.+++.+++.+.+...+.. . .+.
T Consensus 162 ----------------------------~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~-----------e--gi~ 199 (614)
T PRK14971 162 ----------------------------HKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASK-----------E--GIT 199 (614)
T ss_pred ----------------------------hhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHH-----------c--CCC
Confidence 124466788875 6999999999999888753221 1 578
Q ss_pred cCHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 573 FTENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 573 ~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++++|++.+ +.+.|.+.+.++.++
T Consensus 200 i~~~al~~La~~s---~gdlr~al~~Lekl~ 227 (614)
T PRK14971 200 AEPEALNVIAQKA---DGGMRDALSIFDQVV 227 (614)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999999999974 455788888887754
No 157
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.36 E-value=1.4e-11 Score=130.27 Aligned_cols=185 Identities=23% Similarity=0.332 Sum_probs=119.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
++|++++++.+..++... ...+++|+||||||||++|+++++.+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 589999999999887410 0147899999999999999999988732
Q ss_pred ---CEEEEecccccccCccccc-HHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
.++.+++++-. +.+ ....+..+....+. ..+...+|+|||+|.+... .++.|+++
T Consensus 67 ~~~~~i~~~~~~~~-----~~~~~~~~i~~~~~~~~~--~~~~~~vviiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T PRK00440 67 WRENFLELNASDER-----GIDVIRNKIKEFARTAPV--GGAPFKIIFLDEADNLTSD--------------AQQALRRT 125 (319)
T ss_pred cccceEEecccccc-----chHHHHHHHHHHHhcCCC--CCCCceEEEEeCcccCCHH--------------HHHHHHHH
Confidence 34555443321 111 11222222221111 1123569999999999765 78899999
Q ss_pred HhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 433 LEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
++.. ..++.+|++++...
T Consensus 126 le~~---------------------~~~~~lIl~~~~~~----------------------------------------- 143 (319)
T PRK00440 126 MEMY---------------------SQNTRFILSCNYSS----------------------------------------- 143 (319)
T ss_pred HhcC---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 9810 11234555544110
Q ss_pred cCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 513 v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
.+.+++.+|.. ++.|.+++.+++.+++...+.. . .+.++++++++|++.+ +...
T Consensus 144 ---------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~-----------~--~~~i~~~al~~l~~~~---~gd~ 197 (319)
T PRK00440 144 ---------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAEN-----------E--GIEITDDALEAIYYVS---EGDM 197 (319)
T ss_pred ---------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCH
Confidence 12344666765 6899999999998888763322 1 5678999999999963 3457
Q ss_pred hHHHHHHHHHHH
Q 005637 593 RGLRSLLENILM 604 (686)
Q Consensus 593 R~Lr~vIe~il~ 604 (686)
|.+.+.++....
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 887777776443
No 158
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=3.1e-11 Score=124.33 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=53.3
Q ss_pred CChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHH
Q 005637 523 LIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (686)
Q Consensus 523 f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe 600 (686)
+.|.|++|+. .++.+.+++.+++.+++++.. ..+ .+.++++++++|+++. ...+|.|.++++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a-----------~~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA-----------RLR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 3488999994 789999999999999986421 111 4789999999999973 445699999999
Q ss_pred HHHHHHH
Q 005637 601 NILMDAM 607 (686)
Q Consensus 601 ~il~~al 607 (686)
++-..++
T Consensus 212 ~l~~~~l 218 (235)
T PRK08084 212 QLDRASI 218 (235)
T ss_pred HHHHHHH
Confidence 9643443
No 159
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=5.5e-11 Score=130.20 Aligned_cols=212 Identities=21% Similarity=0.234 Sum_probs=130.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|.+.-.+.|...+...... ..+.+++++||||||||++++.+++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~----------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRG----------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999998888532210 012679999999999999999998876
Q ss_pred --CCCEEEEeccccccc------------C----cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccccc
Q 005637 355 --NVPFVIADATTLTQA------------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (686)
Q Consensus 355 --~~pfv~v~~s~l~~s------------g----yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~ 416 (686)
+..++.++|...... + ..|......+..+..... ....+.||+|||+|.+....
T Consensus 83 ~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~viviDE~d~l~~~~----- 154 (394)
T PRK00411 83 AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLFEKE----- 154 (394)
T ss_pred cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCHhHhhccC-----
Confidence 467888998654310 0 111111222222211100 11234689999999997221
Q ss_pred CCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccc
Q 005637 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (686)
Q Consensus 417 ~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~ 496 (686)
+...+..|++.++. ....++.+|+.|+..++...
T Consensus 155 -----~~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~~--------------------- 188 (394)
T PRK00411 155 -----GNDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLYI--------------------- 188 (394)
T ss_pred -----CchHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhhh---------------------
Confidence 11267777777651 11225677777763321111
Q ss_pred cCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc-CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
+.|.+.+|+ ...+.|++++.+++.+|+...+.. . + ..-.+++
T Consensus 189 --------------------------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---~----~----~~~~~~~ 231 (394)
T PRK00411 189 --------------------------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---G----F----YPGVVDD 231 (394)
T ss_pred --------------------------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---h----c----ccCCCCH
Confidence 224455565 357899999999999999863211 0 1 1235899
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
++++.+++......+.+|....++..+...+..
T Consensus 232 ~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 232 EVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 999999997544345578777777766655543
No 160
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-11 Score=136.95 Aligned_cols=179 Identities=23% Similarity=0.360 Sum_probs=114.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+||+.||+.+..+.. -..|+||+||||||||++|+.+...+-.
T Consensus 180 DV~GQ~~AKrAleiAAA----------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 48999999999998874 1379999999999999999999766621
Q ss_pred ---CEEEEe------cc-----------cccccCcccccHHHHHHHHHh----hcchhhHhhcCcEEEEccccccchhcc
Q 005637 357 ---PFVIAD------AT-----------TLTQAGYVGEDVESILYKLLT----VSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 357 ---pfv~v~------~s-----------~l~~sgyvG~~~~~~l~~l~~----~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
..++++ .. .+..+. .+ .-...++. ..++.+..+.+|||||||+-.+...
T Consensus 226 s~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PH---Hs--aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~-- 298 (490)
T COG0606 226 SIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPH---HS--ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS-- 298 (490)
T ss_pred ChHHHHHHHHHhhhcccccccCccceeCCccCCC---cc--chHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH--
Confidence 011111 00 000000 00 11112221 1244566789999999999998776
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc-Cccc
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF-GAPV 491 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf-~~~~ 491 (686)
+++.|.+-||.+.+.|. +...-.....++.+|++.|. +..|+ +.+.
T Consensus 299 ------------iLe~LR~PLE~g~i~Is--------Ra~~~v~ypa~Fqlv~AmNp-------------cpcG~~~~~~ 345 (490)
T COG0606 299 ------------ILEALREPLENGKIIIS--------RAGSKVTYPARFQLVAAMNP-------------CPCGNLGAPL 345 (490)
T ss_pred ------------HHHHHhCccccCcEEEE--------EcCCeeEEeeeeEEhhhcCC-------------CCccCCCCCC
Confidence 99999999995555442 11112344567888888884 44554 4444
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHH
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQL 545 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL 545 (686)
+.+. +.......++++ +.-+|+.|||..+..+.++..++
T Consensus 346 ~~C~-----c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 346 RRCP-----CSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CCcC-----CCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 3331 233444455554 45789999999999999885444
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=1.4e-11 Score=148.00 Aligned_cols=190 Identities=24% Similarity=0.291 Sum_probs=128.0
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.|+. |+|+++.++.+.+.+... .+.+++|+||||||||++|+++|+.
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 4444 899999988888877511 1378999999999999999999987
Q ss_pred c----------CCCEEEEeccccc-ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 l----------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
+ +.+++.++.+.+. ...|.|+- +..+..++..... ...+.||||||||.+...+.. .++
T Consensus 218 i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~-~~~----- 287 (852)
T TIGR03346 218 IVNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKA-EGA----- 287 (852)
T ss_pred HhccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCC-cch-----
Confidence 5 5678888887764 24576754 5666666654321 124689999999999764221 111
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
..+++.|..+++ . ..+.+|.+++..+..+.+
T Consensus 288 ~d~~~~Lk~~l~--------~---------------g~i~~IgaTt~~e~r~~~-------------------------- 318 (852)
T TIGR03346 288 MDAGNMLKPALA--------R---------------GELHCIGATTLDEYRKYI-------------------------- 318 (852)
T ss_pred hHHHHHhchhhh--------c---------------CceEEEEeCcHHHHHHHh--------------------------
Confidence 126677766665 1 136777777743221111
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
+ ..|+|.+||. .|.+..++.++..+|++. +..+|.. ...+.++++++..++
T Consensus 319 -----------~--------~d~al~rRf~-~i~v~~p~~~~~~~iL~~----~~~~~e~-----~~~v~~~d~~i~~~~ 369 (852)
T TIGR03346 319 -----------E--------KDAALERRFQ-PVFVDEPTVEDTISILRG----LKERYEV-----HHGVRITDPAIVAAA 369 (852)
T ss_pred -----------h--------cCHHHHhcCC-EEEeCCCCHHHHHHHHHH----HHHHhcc-----ccCCCCCHHHHHHHH
Confidence 1 3588999997 467888899999998875 3344332 235667888887777
Q ss_pred Hh
Q 005637 583 KK 584 (686)
Q Consensus 583 ~~ 584 (686)
..
T Consensus 370 ~l 371 (852)
T TIGR03346 370 TL 371 (852)
T ss_pred Hh
Confidence 65
No 162
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.33 E-value=2.3e-11 Score=129.59 Aligned_cols=61 Identities=11% Similarity=0.311 Sum_probs=47.2
Q ss_pred cCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHH
Q 005637 521 YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (686)
Q Consensus 521 ~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe 600 (686)
+|++..|+.|+= ||.-.|++.+++.+|++...... .+.++++|+++|++.+ . ...||-+++
T Consensus 343 hGIP~DlLDRll-II~t~py~~~EireIi~iRa~ee-------------~i~l~~~Ale~L~~ig--~---etSLRYa~q 403 (450)
T COG1224 343 HGIPLDLLDRLL-IISTRPYSREEIREIIRIRAKEE-------------DIELSDDALEYLTDIG--E---ETSLRYAVQ 403 (450)
T ss_pred CCCCHhhhhhee-EEecCCCCHHHHHHHHHHhhhhh-------------ccccCHHHHHHHHhhc--h---hhhHHHHHH
Confidence 467788888886 78999999999999998632222 7889999999999952 2 346666665
No 163
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=3.8e-11 Score=130.01 Aligned_cols=213 Identities=18% Similarity=0.194 Sum_probs=128.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
.++|.++.++.|..++..... + ..+.+++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999988852111 0 0126899999999999999999987652
Q ss_pred -------CCEEEEeccccccc--------------C----cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 356 -------VPFVIADATTLTQA--------------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 356 -------~pfv~v~~s~l~~s--------------g----yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
..++.++|...... + ..|.+....+..++... .....+.||+|||+|.+...
T Consensus 68 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccC
Confidence 46788888665311 0 00111111122222110 01234568999999999732
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
. +.+...|+++.+- . .....++.+|+.+|..++.
T Consensus 145 ~-----------~~~L~~l~~~~~~--------~----------~~~~~~v~lI~i~n~~~~~----------------- 178 (365)
T TIGR02928 145 D-----------DDLLYQLSRARSN--------G----------DLDNAKVGVIGISNDLKFR----------------- 178 (365)
T ss_pred C-----------cHHHHhHhccccc--------c----------CCCCCeEEEEEEECCcchH-----------------
Confidence 0 1144555554320 0 1123457777776632210
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCC
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv 569 (686)
+ .+.+.+.+|+. ..+.|+|++.+++.+|++..+.. . ..
T Consensus 179 --------------------~----------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~---~--------~~ 217 (365)
T TIGR02928 179 --------------------E----------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK---A--------FY 217 (365)
T ss_pred --------------------h----------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh---h--------cc
Confidence 1 12344566763 57999999999999999863321 0 11
Q ss_pred ccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
...+++++++++++......+.+|...++++.+...+..
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 235889999998876443445578888888877665543
No 164
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=2.1e-11 Score=124.97 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=104.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
..++|+||||||||+|++++|+.+ +.....+++.... . ...+.+... .+..+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 457999999999999999999876 2333333433211 0 011111111 23469999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
.... ..+..|+.+++.. .+....++|+|++...
T Consensus 104 ~~~~------------~~~~~l~~l~n~~-------------------~~~~~~illits~~~p---------------- 136 (229)
T PRK06893 104 IGNE------------EWELAIFDLFNRI-------------------KEQGKTLLLISADCSP---------------- 136 (229)
T ss_pred cCCh------------HHHHHHHHHHHHH-------------------HHcCCcEEEEeCCCCh----------------
Confidence 6431 1455677777610 0111234455554210
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
. .+. ...|.+.+|+ +.++.+.+++.+++.+|+++.+..
T Consensus 137 -------------------~-~l~----------~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~---------- 176 (229)
T PRK06893 137 -------------------H-ALS----------IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ---------- 176 (229)
T ss_pred -------------------H-Hcc----------ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----------
Confidence 0 000 1236788887 478999999999999999763221
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
. .+.++++++++|+++. ....|.|..+++++-.
T Consensus 177 -~--~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 177 -R--GIELSDEVANFLLKRL---DRDMHTLFDALDLLDK 209 (229)
T ss_pred -c--CCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHH
Confidence 1 5889999999999972 4456999999998753
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.32 E-value=8.4e-12 Score=126.55 Aligned_cols=186 Identities=24% Similarity=0.321 Sum_probs=127.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+|.++.++.|....... + -.|++|.||||||||+-+.++|+++-.
T Consensus 28 dIVGNe~tv~rl~via~~g-------------------n-------------mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEG-------------------N-------------MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHHcC-------------------C-------------CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 4899999999999877410 0 169999999999999999999998832
Q ss_pred ----CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 357 ----pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
.+.+.++++ -.|-++-..--+.|......+......||++||+|.+... .|++|.+.
T Consensus 76 ~~ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 255666654 4455544444555655544444466789999999999876 99999999
Q ss_pred HhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 433 LEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
|| +..+-..|.++.|..+ |
T Consensus 137 ME---------------------iyS~ttRFalaCN~s~--K-------------------------------------- 155 (333)
T KOG0991|consen 137 ME---------------------IYSNTTRFALACNQSE--K-------------------------------------- 155 (333)
T ss_pred HH---------------------HHcccchhhhhhcchh--h--------------------------------------
Confidence 99 2233345555555211 1
Q ss_pred cCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 513 v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
++.++.+|.- ++.|..++..++..-+.+... .-++.++++.++.+.-. ..+..
T Consensus 156 ----------IiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k-------------~Ekv~yt~dgLeaiift---a~GDM 208 (333)
T KOG0991|consen 156 ----------IIEPIQSRCA-ILRYSKLSDQQILKRLLEVAK-------------AEKVNYTDDGLEAIIFT---AQGDM 208 (333)
T ss_pred ----------hhhhHHhhhH-hhhhcccCHHHHHHHHHHHHH-------------HhCCCCCcchHHHhhhh---ccchH
Confidence 2234556665 688888988887665543211 22788999999998875 34556
Q ss_pred hHHHHHHHHH
Q 005637 593 RGLRSLLENI 602 (686)
Q Consensus 593 R~Lr~vIe~i 602 (686)
|+--|.+|..
T Consensus 209 RQalNnLQst 218 (333)
T KOG0991|consen 209 RQALNNLQST 218 (333)
T ss_pred HHHHHHHHHH
Confidence 7666666654
No 166
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.32 E-value=1.2e-11 Score=143.50 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=84.6
Q ss_pred hHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCC-CceEeeccceEEEccCCc
Q 005637 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFICGGAF 469 (686)
Q Consensus 391 ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g-~~i~VdtsniIfI~tgn~ 469 (686)
++.+++|+|||||++.|.+. +|..|+++|+...+.+.+......... +... -..++.+|++++.
T Consensus 213 L~~AngGtL~Ldei~~L~~~--------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~-ip~dvrvIa~~~~ 277 (608)
T TIGR00764 213 IHRAHKGVLYIDEIKTMPLE--------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEP-VPCDFILVASGNL 277 (608)
T ss_pred eEECCCCEEEEEChHhCCHH--------------HHHHHHHHHHhCcEEecCccccccccccCCCC-CccceEEEEECCH
Confidence 44677899999999999876 999999999855544322111100000 0001 1235778888773
Q ss_pred ccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC---eEEEccCc---ChH
Q 005637 470 VDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLAL---TEN 543 (686)
Q Consensus 470 ~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~---~iI~f~pL---s~e 543 (686)
.+ + +.+.|+|+.||+ ..+.|.+. +.+
T Consensus 278 ~~--------------------------------------l----------~~l~~~l~~rf~~y~v~v~~~~~~~~~~e 309 (608)
T TIGR00764 278 DD--------------------------------------L----------EGMHPALRSRIRGYGYEVYMKDTMPDTPE 309 (608)
T ss_pred HH--------------------------------------H----------hhcCHHHHHHhcCCeEEEEeeccCCCCHH
Confidence 11 0 126699999999 66766554 455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcC-------CCCCChhHHHHHHHHH
Q 005637 544 QLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENI 602 (686)
Q Consensus 544 eL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~-------~~~~GAR~Lr~vIe~i 602 (686)
...++++. +.+++ +..|...+++++|++.|.+++. ......|.|.++++..
T Consensus 310 ~~~~~~~~----i~~~~----~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 310 NRDKLVQF----VAQEV----KKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHHHHH----HHHHH----HHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 55555432 22222 2334455899999999987522 1223357777777665
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=4.5e-11 Score=137.19 Aligned_cols=176 Identities=15% Similarity=0.241 Sum_probs=111.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
..++|+|++|+|||+|+++|++.+ +..++.+++.++.. .+...-....+.. |... -....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~-f~~~-----y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDS-FRRR-----YREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHH-HHHH-----hhcCCEEEEehhc
Confidence 458999999999999999999876 34667777766642 1111100001111 1110 1234699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.+..+. ..+..|+.+++.. ...+--+|+|++..-
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l--------------------~e~gk~IIITSd~~P-------------- 421 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTL--------------------HNANKQIVLSSDRPP-------------- 421 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHH--------------------HhcCCCEEEecCCCh--------------
Confidence 986541 2566677777611 011112233544210
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHH
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~ 563 (686)
..+ ..+.+.|++|| ..++.+.+++.+.+.+||++.+..
T Consensus 422 ---------------------~eL-----------~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------- 461 (617)
T PRK14086 422 ---------------------KQL-----------VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------- 461 (617)
T ss_pred ---------------------Hhh-----------hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh--------
Confidence 000 01346788999 678999999999999999863211
Q ss_pred HhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 564 ~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
..+.++++++++|+++ +.. +.|.|..+|.++...+.
T Consensus 462 -----r~l~l~~eVi~yLa~r-~~r--nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 462 -----EQLNAPPEVLEFIASR-ISR--NIRELEGALIRVTAFAS 497 (617)
T ss_pred -----cCCCCCHHHHHHHHHh-ccC--CHHHHHHHHHHHHHHHH
Confidence 2688999999999997 444 46999999999865444
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.30 E-value=2.4e-11 Score=134.42 Aligned_cols=176 Identities=18% Similarity=0.285 Sum_probs=111.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
.+++|+||||+|||+|++++++.+ +..++.+++.++.. .+...-....+..+... .....+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEK------YRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHH------HHhCCEEEEehhh
Confidence 578999999999999999999877 45677788766541 11100000000011000 0124699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.+.... ..+..|+.+++... . .+..+|+|++...
T Consensus 210 ~l~~~~------------~~~~~l~~~~n~~~-------------------~-~~~~iiits~~~p-------------- 243 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFNALH-------------------E-NGKQIVLTSDRPP-------------- 243 (405)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------H-CCCCEEEecCCCH--------------
Confidence 986541 25667777776110 0 1112334444210
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHH
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~ 563 (686)
. .+. .+.+.+++|+. .++.+.+++.+++.+|++..+..
T Consensus 244 ---------------------~-~l~----------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------- 283 (405)
T TIGR00362 244 ---------------------K-ELP----------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-------- 283 (405)
T ss_pred ---------------------H-HHh----------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH--------
Confidence 0 000 13366888994 58999999999999999863222
Q ss_pred HhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 564 ~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
..+.++++++++|++. + ....|.|..+|.++...+.
T Consensus 284 -----~~~~l~~e~l~~ia~~-~--~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 284 -----EGLELPDEVLEFIAKN-I--RSNVRELEGALNRLLAYAS 319 (405)
T ss_pred -----cCCCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHH
Confidence 1678899999999986 3 4456999999999876654
No 169
>PHA02244 ATPase-like protein
Probab=99.30 E-value=9.3e-11 Score=127.43 Aligned_cols=182 Identities=16% Similarity=0.233 Sum_probs=107.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc--ccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT--LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~--l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
.++||+||||||||++|+++|..++.||+.++... +.-.|++... + . +...+.......+++|+||||+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-~----~~dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-K----FHETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-c----ccchHHHHHhhcCCEEEEeCcCcCC
Confidence 68999999999999999999999999999988431 1001222111 0 0 1111111113467899999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcC
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~ 488 (686)
++ ++..|+.++++..+..+ | .. .....++.+|+|+|... -|+.
T Consensus 194 p~--------------vq~~L~~lLd~r~l~l~--g-------~~-i~~h~~FRlIATsN~~~-------------~G~~ 236 (383)
T PHA02244 194 PE--------------ALIIINSAIANKFFDFA--D-------ER-VTAHEDFRVISAGNTLG-------------KGAD 236 (383)
T ss_pred HH--------------HHHHHHHHhccCeEEec--C-------cE-EecCCCEEEEEeeCCCc-------------cCcc
Confidence 87 99999999986555432 1 11 11234688999988421 0110
Q ss_pred cccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHh--hhHHHHHHHHHHHHhh
Q 005637 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT--EPKNALGKQYRKMFQM 566 (686)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~--~~l~~L~kq~~~~~~~ 566 (686)
. ++. -.+.+.+++++||- +|.|..+++.|. .|+. ..+-++....+..+..
T Consensus 237 ~-------------------~y~-------G~k~L~~AllDRFv-~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~ 288 (383)
T PHA02244 237 H-------------------IYV-------ARNKIDGATLDRFA-PIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAE 288 (383)
T ss_pred c-------------------ccC-------CCcccCHHHHhhcE-EeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhc
Confidence 0 000 01236688999996 577777664332 3332 2222333344443444
Q ss_pred cCCccccCHHHHHHHHH
Q 005637 567 NGVKLHFTENALRLIAK 583 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~ 583 (686)
.+....++..++-+.++
T Consensus 289 ~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 289 KGLDHVFSMRAIIHGKK 305 (383)
T ss_pred CCCCccccHHHHHHHHH
Confidence 55666666655555555
No 170
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=1.2e-12 Score=122.69 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=72.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccccc-CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQA-GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~s-gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
+|||+||||||||++|+.+|+.++.+++.+.++..+.. .+.|.-.-..-...+......-....+++++||||+++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 58999999999999999999999999999999875431 11111100000000000011111236789999999999876
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~ 470 (686)
+++.|+.++|+..+.++..+......... .-..++.+|+|+|..
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPR 124 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSS
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCC
Confidence 99999999997766655444322111110 112258999998843
No 171
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=7.1e-11 Score=121.47 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=107.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
..++|+||+|||||+|+++++..+ +...+.+++.++. ..+.+.+..- .+.-+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 469999999999999999997665 3344445544332 1111222111 12359999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
..... .+..|+.+++.. ......+|+|++.. .+
T Consensus 106 ~~~~~------------~~~~lf~l~n~~--------------------~~~~~~vI~ts~~~-p~-------------- 138 (233)
T PRK08727 106 AGQRE------------DEVALFDFHNRA--------------------RAAGITLLYTARQM-PD-------------- 138 (233)
T ss_pred cCChH------------HHHHHHHHHHHH--------------------HHcCCeEEEECCCC-hh--------------
Confidence 65411 456677776611 01123345555521 00
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
.+ ..+.|.+.+|+ ..++.|++++.+++.+|++.....
T Consensus 139 --------------------~l-----------~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~---------- 177 (233)
T PRK08727 139 --------------------GL-----------ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR---------- 177 (233)
T ss_pred --------------------hh-----------hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH----------
Confidence 00 01347788997 678999999999999999852111
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
. .+.++++++++|+++. +..+|.+.++++.+...++.
T Consensus 178 -~--~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 178 -R--GLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLA 214 (233)
T ss_pred -c--CCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 1 5789999999999973 34568898889987654554
No 172
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.28 E-value=3.3e-11 Score=130.01 Aligned_cols=62 Identities=32% Similarity=0.525 Sum_probs=46.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
-+|||.+|.++.-..+..-.. + .+..+.+||.||||||||.||-++|+.++
T Consensus 25 GlVGQ~~AReAagiiv~mIk~----~-----------------------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKE----G-----------------------KIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHT----T-------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHHHhc----c-----------------------cccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 379999999988877642111 1 11247999999999999999999999996
Q ss_pred CCEEEEecccc
Q 005637 356 VPFVIADATTL 366 (686)
Q Consensus 356 ~pfv~v~~s~l 366 (686)
.||+.++++++
T Consensus 78 ~PF~~isgSEi 88 (398)
T PF06068_consen 78 VPFVSISGSEI 88 (398)
T ss_dssp S-EEEEEGGGG
T ss_pred CCeeEccccee
Confidence 79999999988
No 173
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.27 E-value=1.2e-10 Score=136.11 Aligned_cols=205 Identities=15% Similarity=0.216 Sum_probs=129.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCce-EEEEccCCChHHHHHHHHHHhc--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~-vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
.+.|.|+-.+.|..++...... -.+.+ ++++|+||||||.+++.+.+.+
T Consensus 756 ~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4779999999888888532220 00134 4699999999999999997665
Q ss_pred --------CCCEEEEecccccccC---------------cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhc
Q 005637 355 --------NVPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 355 --------~~pfv~v~~s~l~~sg---------------yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r 411 (686)
...++.++|..+..+. ..|......+..++..... ......||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc-
Confidence 1457899996653210 0111112333344332110 0112358999999999875
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccc
Q 005637 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (686)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~ 491 (686)
.++.|+.+++... .....+++|+.+|..++-.
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDLpe----------------- 916 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDLPE----------------- 916 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhcch-----------------
Confidence 4667777776100 1123477777776322100
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
.+.|.+.+|+. ..+.|+||+.+++.+||...+... .
T Consensus 917 ------------------------------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-------------~ 953 (1164)
T PTZ00112 917 ------------------------------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-------------K 953 (1164)
T ss_pred ------------------------------hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-------------C
Confidence 13355777774 358899999999999998633221 2
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
..++++|++++|+.+....+.||..-.++++++.
T Consensus 954 gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 3599999999999866666778887777776654
No 174
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=6.2e-11 Score=120.99 Aligned_cols=171 Identities=19% Similarity=0.357 Sum_probs=105.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccc---cHHHHHHHHHhhcchhhHhhcCcEEEEc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~---~~~~~l~~l~~~a~~~ve~a~~gILfID 402 (686)
..++|+||+|+|||+|.+++++.+ +..++.+++.++.. .+... ..-..+.+-+. .--+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~~~~~~~~~~~~~~~~~---------~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFADALRDGEIEEFKDRLR---------SADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHHHHHHTTSHHHHHHHHC---------TSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHHHHHHcccchhhhhhhh---------cCCEEEEe
Confidence 468999999999999999998765 45677788766642 01000 00011111122 23599999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcccc
Q 005637 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (686)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~ 482 (686)
+++.+... +..|..|+.+++... . .+-.+|+|++..
T Consensus 105 Di~~l~~~------------~~~q~~lf~l~n~~~-------------------~-~~k~li~ts~~~------------ 140 (219)
T PF00308_consen 105 DIQFLAGK------------QRTQEELFHLFNRLI-------------------E-SGKQLILTSDRP------------ 140 (219)
T ss_dssp TGGGGTTH------------HHHHHHHHHHHHHHH-------------------H-TTSEEEEEESS-------------
T ss_pred cchhhcCc------------hHHHHHHHHHHHHHH-------------------h-hCCeEEEEeCCC------------
Confidence 99998765 227888888887211 1 112233344311
Q ss_pred CCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHH
Q 005637 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 483 ~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~ 560 (686)
| .++ ..+.|.|.+|+ ..++.+.+++.++..+|+.+....
T Consensus 141 -------P-------------------------~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----- 181 (219)
T PF00308_consen 141 -------P-------------------------SEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE----- 181 (219)
T ss_dssp -------T-------------------------TTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH-----
T ss_pred -------C-------------------------ccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH-----
Confidence 0 000 02558899999 568999999999999999863222
Q ss_pred HHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 005637 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 561 ~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
. .+.++++++++|+++ + ....|+|..++.++...
T Consensus 182 ------~--~~~l~~~v~~~l~~~-~--~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 182 ------R--GIELPEEVIEYLARR-F--RRDVRELEGALNRLDAY 215 (219)
T ss_dssp ------T--T--S-HHHHHHHHHH-T--TSSHHHHHHHHHHHHHH
T ss_pred ------h--CCCCcHHHHHHHHHh-h--cCCHHHHHHHHHHHHHH
Confidence 1 667999999999997 3 34569999999987654
No 175
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.27 E-value=7.4e-11 Score=123.61 Aligned_cols=230 Identities=21% Similarity=0.276 Sum_probs=141.2
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHH
Q 005637 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (686)
Q Consensus 267 t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~L 346 (686)
+...|+..|++.+.||.-|++.|..++..|+.. ..+.+ |..+-|+|+|||||..+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-------------~~p~K------------PLvLSfHG~tGTGKN~V 126 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-------------PNPRK------------PLVLSFHGWTGTGKNYV 126 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-------------CCCCC------------CeEEEecCCCCCchhHH
Confidence 355699999999999999999999999866552 11222 26677999999999999
Q ss_pred HHHHHHhcC-----CCEEEEecccc--cccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCC
Q 005637 347 AKTLARYVN-----VPFVIADATTL--TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (686)
Q Consensus 347 AraLA~~l~-----~pfv~v~~s~l--~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d 419 (686)
++.||+.+. .+++..=-+.. -.+.++ +..-.++...-...+.+.+.+++++||+|||++.
T Consensus 127 a~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i----e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g--------- 193 (344)
T KOG2170|consen 127 AEIIAENLYRGGLRSPFVHHFVATLHFPHASKI----EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG--------- 193 (344)
T ss_pred HHHHHHHHHhccccchhHHHhhhhccCCChHHH----HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh---------
Confidence 999998872 23332111111 111111 1111222222234455778999999999999987
Q ss_pred CchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCccc--HH----HHHHhccccCCCCcCccccc
Q 005637 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--IE----KTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 420 ~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~--Le----k~i~~r~~~~~igf~~~~~~ 493 (686)
+.++|-..||- .+ ....+|+++.|||+-+|..+ +. +..+....++.+++..-.
T Consensus 194 -----Lld~lkpfLdy------------yp--~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E-- 252 (344)
T KOG2170|consen 194 -----LLDVLKPFLDY------------YP--QVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFE-- 252 (344)
T ss_pred -----HHHHHhhhhcc------------cc--ccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhh--
Confidence 99999888881 01 11247899999999887664 22 223334444444442221
Q ss_pred ccccCCCchhhhHHHHHhhcCc---hHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 494 NMRAGGVTDAVVTSSLMETVES---SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~---~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
..++..... ..+....++| .+++|..|+|.|++..+....++.. +.+ . .
T Consensus 253 -------------~~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~e---l~~--------r--g 304 (344)
T KOG2170|consen 253 -------------PALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRAE---LRK--------R--G 304 (344)
T ss_pred -------------HHHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHHH---HHh--------c--c
Confidence 112221111 1222333333 3578999999999999988887652 222 1 3
Q ss_pred cccCHHHHHHHHH
Q 005637 571 LHFTENALRLIAK 583 (686)
Q Consensus 571 l~~s~eAl~~La~ 583 (686)
+..+++.++.+++
T Consensus 305 ~~~d~~~~erva~ 317 (344)
T KOG2170|consen 305 LAPDQDFVERVAN 317 (344)
T ss_pred cccchHHHHHHHH
Confidence 5566666666555
No 176
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.26 E-value=4.2e-11 Score=134.37 Aligned_cols=176 Identities=16% Similarity=0.304 Sum_probs=111.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
.+++|+||||||||+|++++++.+ +..++.+++.++.. .+...-.......+... .....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKEK------YRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHHH------HhcCCEEEEehhh
Confidence 579999999999999999999887 44577778776642 11111000001111110 1134699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.+.... ..+..|+.+++... +....++| +++...
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~-------------------~~~~~iii-ts~~~p-------------- 255 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALH-------------------EAGKQIVL-TSDRPP-------------- 255 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------HCCCcEEE-ECCCCH--------------
Confidence 986541 15666777665110 01112333 443110
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHH
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~ 563 (686)
.. +. ++.|.+++|+. .++.+.+++.+++.+|++..+..
T Consensus 256 ---------------------~~-l~----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------- 295 (450)
T PRK00149 256 ---------------------KE-LP----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------- 295 (450)
T ss_pred ---------------------HH-HH----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH--------
Confidence 00 00 13366888994 68999999999999999863221
Q ss_pred HhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 564 ~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
..+.++++++++|++.. ...+|.|..+|.++...+.
T Consensus 296 -----~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 296 -----EGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYAS 331 (450)
T ss_pred -----cCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHH
Confidence 16789999999999962 4457999999998865544
No 177
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.26 E-value=1.2e-12 Score=122.52 Aligned_cols=111 Identities=28% Similarity=0.324 Sum_probs=65.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecc-cccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
|+||+|+||+|||++|+++|+.++..|.++.++ ++.++...|....+.-...+.-.++. .-..|+++|||.+..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GP---if~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGP---IFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-T---T-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecCh---hhhceeeecccccCCHH
Confidence 689999999999999999999999999999986 56544444432111100111111111 12469999999999998
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeec-cceEEEccCCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT-KDILFICGGAFV 470 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vdt-sniIfI~tgn~~ 470 (686)
+|++||++|+++.|.+ .| . .... ..+++|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g-------~--~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DG-------Q--TYPLPDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TT-------E--EEE--SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEe--CC-------E--EEECCCcEEEEEecCcc
Confidence 9999999999777765 22 1 2232 347778887743
No 178
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.25 E-value=8.9e-11 Score=135.81 Aligned_cols=201 Identities=19% Similarity=0.231 Sum_probs=126.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEecccccccCccccc-HHHHHH-HHHhhcchhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGED-VESILY-KLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~v~~s~l~~sgyvG~~-~~~~l~-~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
++|||.|+||||||++|+++++.+. .||+.+... .++...+|.- ....+. ..+...++.+..+++||||||||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 7999999999999999999999885 469888753 2223333331 111110 1111223455667889999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
+.+. +|+.|+.+|+...++|...|. ... -..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~-------~~~-~p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGI-------SVV-HPAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCC-------cee-ecCceEEEEecCCcc---------------
Confidence 9998 999999999855554432231 111 234678888776321
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh-HHHHHHHhhhHHHHH--------
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNALG-------- 557 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~-eeL~~IL~~~l~~L~-------- 557 (686)
....|.+.|+.||+..|.+..+.. ++..+|++.......
T Consensus 139 --------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~ 186 (589)
T TIGR02031 139 --------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELE 186 (589)
T ss_pred --------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhH
Confidence 001377889999998777766544 445677765432211
Q ss_pred --HHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCC-hhHHHHHHHH
Q 005637 558 --KQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG-ARGLRSLLEN 601 (686)
Q Consensus 558 --kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~G-AR~Lr~vIe~ 601 (686)
.+........-..+.++++++++|++.+...+.. .|....+++-
T Consensus 187 ~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 187 LLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred HHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 1111112222346789999999999987655543 5555555543
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-10 Score=135.86 Aligned_cols=198 Identities=23% Similarity=0.279 Sum_probs=139.2
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
.|...-...||. |+|.|+-++++.+.+.+. .+.|.+|+|+||+|||.
T Consensus 160 lt~~Ar~gklDP-vIGRd~EI~r~iqIL~RR--------------------------------~KNNPvLiGEpGVGKTA 206 (786)
T COG0542 160 LTELAREGKLDP-VIGRDEEIRRTIQILSRR--------------------------------TKNNPVLVGEPGVGKTA 206 (786)
T ss_pred hHHHHhcCCCCC-CcChHHHHHHHHHHHhcc--------------------------------CCCCCeEecCCCCCHHH
Confidence 444445556666 799999999999888511 13788999999999999
Q ss_pred HHHHHHHhc----------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 346 LAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 346 LAraLA~~l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
++..+|... +..++..|++.+.. ++|.|+- +..+..++... +...+-||||||||.+.......
T Consensus 207 IvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~ 281 (786)
T COG0542 207 IVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATE 281 (786)
T ss_pred HHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCccc
Confidence 999999776 44588999888763 6788875 66677776543 23447899999999998763321
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
+...| +-|.|.++|.. | . +-.|.+++.
T Consensus 282 G~a~D-----AaNiLKPaLAR--------G-------e--------L~~IGATT~------------------------- 308 (786)
T COG0542 282 GGAMD-----AANLLKPALAR--------G-------E--------LRCIGATTL------------------------- 308 (786)
T ss_pred ccccc-----hhhhhHHHHhc--------C-------C--------eEEEEeccH-------------------------
Confidence 11234 78888888871 1 1 334445542
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
+++.+.++++ +.|-.||. .|....++.++...|++- +..+|+. ...+.++
T Consensus 309 ------------~EYRk~iEKD--------~AL~RRFQ-~V~V~EPs~e~ti~ILrG----lk~~yE~-----hH~V~i~ 358 (786)
T COG0542 309 ------------DEYRKYIEKD--------AALERRFQ-KVLVDEPSVEDTIAILRG----LKERYEA-----HHGVRIT 358 (786)
T ss_pred ------------HHHHHHhhhc--------hHHHhcCc-eeeCCCCCHHHHHHHHHH----HHHHHHH-----ccCceec
Confidence 3455555544 44555665 488999999999999985 6666654 3467888
Q ss_pred HHHHHHHHHh
Q 005637 575 ENALRLIAKK 584 (686)
Q Consensus 575 ~eAl~~La~~ 584 (686)
++|+...+..
T Consensus 359 D~Al~aAv~L 368 (786)
T COG0542 359 DEALVAAVTL 368 (786)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 180
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.9e-10 Score=126.34 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=114.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
++.||+||||||||++.-|+|++++..++-++.++... + .-++.++..++ ..+||+|.+||.....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~------n--~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL------D--SDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC------c--HHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 79999999999999999999999999998888877652 2 33788877665 4699999999997553
Q ss_pred ccccccC--CC--CchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 411 AESLNIS--RD--VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 411 r~~~~~~--~d--~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
++..... .. ....-.++.||..+||-.-. ....-|+|+|+|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-----------------cg~ERIivFTTNh~E--------------- 349 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-----------------CGDERIIVFTTNHKE--------------- 349 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhcccccc-----------------CCCceEEEEecCChh---------------
Confidence 3322110 11 11224778899999963211 011356778888542
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHH-----HHHHH
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKN-----ALGKQ 559 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~-----~L~kq 559 (686)
.+.|+|+. |+|..|.+..=+.+.+..++..++. .|..+
T Consensus 350 -----------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 350 -----------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred -----------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 25577776 9999999999999999888876542 24444
Q ss_pred HHHHHhhcCCccccCH-HHHHHHHHh
Q 005637 560 YRKMFQMNGVKLHFTE-NALRLIAKK 584 (686)
Q Consensus 560 ~~~~~~~~gv~l~~s~-eAl~~La~~ 584 (686)
+++.. ....+|+ ++.+.|..+
T Consensus 395 ie~l~----~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 395 IERLI----EETEVTPAQVAEELMKN 416 (457)
T ss_pred HHHHh----hcCccCHHHHHHHHhhc
Confidence 44421 1334554 444555554
No 181
>PRK05642 DNA replication initiation factor; Validated
Probab=99.22 E-value=1.6e-10 Score=119.05 Aligned_cols=168 Identities=20% Similarity=0.276 Sum_probs=110.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||+|||||+|++++++.+ +...+.+++.++... ... +.+.+. ..-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~-~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------GPE-LLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------hHH-HHHhhh---------hCCEEEEechhhh
Confidence 678999999999999999998764 456666777665421 011 111122 1248999999987
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
.... ..+..|+.+++. ...++..+|+|++...
T Consensus 110 ~~~~------------~~~~~Lf~l~n~--------------------~~~~g~~ilits~~~p---------------- 141 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNR--------------------LRDSGRRLLLAASKSP---------------- 141 (234)
T ss_pred cCCh------------HHHHHHHHHHHH--------------------HHhcCCEEEEeCCCCH----------------
Confidence 5431 156677777761 0111122344444210
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
. .+ ....|++++|+ ..++.+.+++.+++.++++....
T Consensus 142 -------------------~-~l----------~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~----------- 180 (234)
T PRK05642 142 -------------------R-EL----------PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS----------- 180 (234)
T ss_pred -------------------H-Hc----------CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH-----------
Confidence 0 00 01348899999 57889999999999999874211
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
.. .+.++++++++|+++ ....+|.|.++++++-..++.
T Consensus 181 ~~--~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 181 RR--GLHLTDEVGHFILTR---GTRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred Hc--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 11 478999999999997 245569999999998755544
No 182
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=4.1e-10 Score=127.59 Aligned_cols=230 Identities=16% Similarity=0.235 Sum_probs=129.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC--EEEEecccccc-cCcccc------------cHHHHHHHHHh----hcchhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ-AGYVGE------------DVESILYKLLT----VSDYNV 391 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~v~~s~l~~-sgyvG~------------~~~~~l~~l~~----~a~~~v 391 (686)
.+++|+||||+|||++++.++..+... -..+..+.+.. +|.... .-..-...++. ..++.+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 689999999999999999999876311 11122222210 000000 00001112222 224567
Q ss_pred HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCccc
Q 005637 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (686)
Q Consensus 392 e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~ 471 (686)
+.+.+|+|||||++.+.+. +|+.|++.||...+.|...|.. .....++.+|+|+|..
T Consensus 291 ~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~--------~~~pa~f~lIAa~NP~- 347 (506)
T PRK09862 291 SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAK--------ITYPARFQLVAAMNPS- 347 (506)
T ss_pred hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcc--------eeccCCEEEEEeecCc-
Confidence 7889999999999999887 9999999999666655333311 1234578899998842
Q ss_pred HHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHH----
Q 005637 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---- 547 (686)
Q Consensus 472 Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~---- 547 (686)
..|+..... + .+.......++.. +.+++++|||..+.+++++.+++.+
T Consensus 348 ------------pcG~~~~~~-c-----~c~~~~~~~Y~~~----------ls~plLDRfdL~v~v~~~~~~~l~~~~~~ 399 (506)
T PRK09862 348 ------------PTGHYQGNH-N-----RCTPEQTLRYLNR----------LSGPFLDRFDLSLEIPLPPPGILSKTVVP 399 (506)
T ss_pred ------------cceecCCCC-C-----CcCHHHHHHHHhh----------CCHhHHhhccEEEEeCCCCHHHHhcccCC
Confidence 234322111 1 1122222234443 6689999999999999886544322
Q ss_pred ------HHhhhHHHHHHHHHH--HHhh--c----CCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 005637 548 ------VLTEPKNALGKQYRK--MFQM--N----GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (686)
Q Consensus 548 ------IL~~~l~~L~kq~~~--~~~~--~----gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~ 613 (686)
|.++....-..|.++ .+.. . ...+.+++++.+.+.+.....+..+|...++++- ..+++++...
T Consensus 400 ~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrv--ARTiADL~g~ 477 (506)
T PRK09862 400 GESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKV--ARTIADIDQS 477 (506)
T ss_pred CCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHHcCC
Confidence 221111111111111 1100 0 0124578888887776544556778999988874 4555555443
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=3.9e-10 Score=126.33 Aligned_cols=177 Identities=19% Similarity=0.300 Sum_probs=108.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
.+++|+||||+|||+|++++++.+ +..++.+++.++.. .+...-....+..+... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~f~~~--~---~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNEFREK--Y---RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHHHHHH--H---HhcCCEEEEechh
Confidence 579999999999999999999876 34567777766531 11000000001111100 0 0135699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
.+.... ..|..|+.+++.. .+....++ ++++.. ..
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l-------------------~~~~k~iI-itsd~~-p~------------ 239 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNEL-------------------HDSGKQIV-ICSDRE-PQ------------ 239 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHH-------------------HHcCCeEE-EECCCC-HH------------
Confidence 885431 1566666666510 01111233 343311 00
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHH
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~ 563 (686)
.+ . .+.+.+++|| ..++.+.+++.+++.+|+++.+..
T Consensus 240 ----------------------~l-~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~-------- 278 (440)
T PRK14088 240 ----------------------KL-S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI-------- 278 (440)
T ss_pred ----------------------HH-H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh--------
Confidence 00 0 0225577888 568999999999999999763211
Q ss_pred HhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 564 ~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
. .+.++++++++|+++. ..++|.|..++.++...+.
T Consensus 279 ---~--~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 279 ---E--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred ---c--CCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHH
Confidence 1 5778999999999972 4467999999999865544
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=7.8e-10 Score=120.57 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=112.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
++||+++++.+..++.... -+..+||+||+|+|||++|+.+|+.+..
T Consensus 25 l~Gh~~a~~~L~~a~~~gr-------------------------------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~ 73 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGK-------------------------------LHHALLFEGPEGIGKATLAFHLANHILSHP 73 (351)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 7999999999999885110 0256999999999999999999998844
Q ss_pred -----CEEEE----eccc---cc---ccCc--c-------------cccHHHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 357 -----PFVIA----DATT---LT---QAGY--V-------------GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 357 -----pfv~v----~~s~---l~---~sgy--v-------------G~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
+.... +|.. +. .+++ + .-.+ ..++.+..........+..-|++|||+|.
T Consensus 74 ~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~ 152 (351)
T PRK09112 74 DPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADD 152 (351)
T ss_pred ccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhh
Confidence 11100 1110 00 0010 0 0001 22233222111111123456999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
+... .+++||+.||. ...+.+||+.++..+
T Consensus 153 l~~~--------------aanaLLk~LEE---------------------pp~~~~fiLit~~~~--------------- 182 (351)
T PRK09112 153 MNRN--------------AANAILKTLEE---------------------PPARALFILISHSSG--------------- 182 (351)
T ss_pred cCHH--------------HHHHHHHHHhc---------------------CCCCceEEEEECChh---------------
Confidence 9887 89999999992 112344444433110
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhh
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~ 566 (686)
.+.|.+++|+. .+.|.+++.+++.+++.+.
T Consensus 183 -----------------------------------~llptIrSRc~-~i~l~pl~~~~~~~~L~~~-------------- 212 (351)
T PRK09112 183 -----------------------------------RLLPTIRSRCQ-PISLKPLDDDELKKALSHL-------------- 212 (351)
T ss_pred -----------------------------------hccHHHHhhcc-EEEecCCCHHHHHHHHHHh--------------
Confidence 13477889984 8999999999999998751
Q ss_pred cCCccccCHHHHHHHHHhcCCCCCChhHHHHHH
Q 005637 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vI 599 (686)
+....++++++..+++.+ ++..|...+++
T Consensus 213 -~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll 241 (351)
T PRK09112 213 -GSSQGSDGEITEALLQRS---KGSVRKALLLL 241 (351)
T ss_pred -hcccCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 112227788888887753 23344444444
No 185
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.17 E-value=2e-10 Score=133.28 Aligned_cols=51 Identities=33% Similarity=0.574 Sum_probs=41.4
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+...+-+.|+||+++++.|..++.. ..+++|+||||||||++|+++
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~----------------------------------~~~~l~~G~~G~GKttla~~l 70 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ----------------------------------RRHVMMIGSPGTGKSMLAKAM 70 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh----------------------------------CCeEEEECCCCCcHHHHHHHH
Confidence 3345555689999999999887741 158999999999999999999
Q ss_pred HHhcC
Q 005637 351 ARYVN 355 (686)
Q Consensus 351 A~~l~ 355 (686)
++.+.
T Consensus 71 ~~~l~ 75 (637)
T PRK13765 71 AELLP 75 (637)
T ss_pred HHHcC
Confidence 98764
No 186
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=1.3e-09 Score=111.12 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=50.4
Q ss_pred hhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 005637 525 PEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENI 602 (686)
Q Consensus 525 PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~i 602 (686)
|.|++|+. .++.+.+++.+++.+++++.... . .+.++++++++|+++. ...+|.|.++++++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-----------~--~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-----------S--SVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 77888984 57999999999998888763221 1 5789999999999973 55579999999985
Q ss_pred H
Q 005637 603 L 603 (686)
Q Consensus 603 l 603 (686)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 187
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.9e-10 Score=133.18 Aligned_cols=255 Identities=18% Similarity=0.244 Sum_probs=149.3
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+.+.+...|.|.+.+|+.|.-++.....+...... --...-|+||+|-||||||.|.|.+
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~--------------------~iRGDInILLvGDPgtaKSqlLk~v 339 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGT--------------------RIRGDIHILLVGDPGTAKSQLLKYV 339 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCc--------------------ccccceeEEEcCCCchhHHHHHHHH
Confidence 33444566899999999998777522221100000 0011279999999999999999999
Q ss_pred HHhcCCCEEEEecccccccCcccccHHHHH-HHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 351 ARYVNVPFVIADATTLTQAGYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l-~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
++.+....+ .+...-...|.......... .+ +....+.+..|.+||..|||+|++... -..+|
T Consensus 340 ~~~aPr~vy-tsgkgss~~GLTAav~rd~~tge-~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~ai 403 (682)
T COG1241 340 AKLAPRGVY-TSGKGSSAAGLTAAVVRDKVTGE-WVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAI 403 (682)
T ss_pred HhhCCceEE-EccccccccCceeEEEEccCCCe-EEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHH
Confidence 998855433 22211111222111111111 11 111223445678999999999999877 89999
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
.++||...++|.+-|-.+ .-...+-+++++|+.- ++ |.. ...+
T Consensus 404 hEaMEQQtIsIaKAGI~a--------tLnARcsvLAAaNP~~-------Gr------yd~----------------~~~~ 446 (682)
T COG1241 404 HEAMEQQTISIAKAGITA--------TLNARCSVLAAANPKF-------GR------YDP----------------KKTV 446 (682)
T ss_pred HHHHHhcEeeecccceee--------ecchhhhhhhhhCCCC-------Cc------CCC----------------CCCH
Confidence 999998888775555221 1223355666766421 01 111 1122
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccC-cChHHHHHHHhhhHHHH------------------------HHHHHHHH
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLA-LTENQLVQVLTEPKNAL------------------------GKQYRKMF 564 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~p-Ls~eeL~~IL~~~l~~L------------------------~kq~~~~~ 564 (686)
.+.+. +.++|++|||.++.+.+ .+++.-..|..+.++.. .++|-. +
T Consensus 447 ~enI~--------l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~-Y 517 (682)
T COG1241 447 AENIN--------LPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYIS-Y 517 (682)
T ss_pred HHhcC--------CChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHH-H
Confidence 23333 78999999998866544 44443444444443332 455554 2
Q ss_pred hhcCCccccCHHHHHHHHHhcCC---C-----------CCChhHHHHHHHHHHHHHHhcC
Q 005637 565 QMNGVKLHFTENALRLIAKKAIS---K-----------NTGARGLRSLLENILMDAMYEI 610 (686)
Q Consensus 565 ~~~gv~l~~s~eAl~~La~~a~~---~-----------~~GAR~Lr~vIe~il~~al~e~ 610 (686)
+...+...++++|.+.|.+. |. . ..-+|+|..+|+- ..|.+++
T Consensus 518 AR~~v~P~lt~ea~e~l~~~-Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRL--aeA~Ak~ 574 (682)
T COG1241 518 ARKNVTPVLTEEAREELEDY-YVEMRKKSALVEEKRTIPITARQLESIIRL--AEAHAKM 574 (682)
T ss_pred HhccCCcccCHHHHHHHHHH-HHHhhhccccccccCcccccHHHHHHHHHH--HHHHHhh
Confidence 33446678999999999986 41 1 1347999999874 3444433
No 188
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=5.2e-10 Score=125.49 Aligned_cols=175 Identities=17% Similarity=0.297 Sum_probs=110.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||+|+|||+|++++++.+ +..++.+++..+.. .+...-...... .+... .....+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~~-~f~~~-----~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEMQ-RFRQF-----YRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchHH-HHHHH-----cccCCEEEEcchhhh
Confidence 579999999999999999999876 56677777765531 000000000000 11100 123469999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
.... ..|..|+.+++... +. +..+|+|++...
T Consensus 215 ~~k~------------~~qeelf~l~N~l~-------------------~~-~k~IIlts~~~p---------------- 246 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFNSLH-------------------TE-GKLIVISSTCAP---------------- 246 (445)
T ss_pred cCCh------------hhHHHHHHHHHHHH-------------------HC-CCcEEEecCCCH----------------
Confidence 6531 15666776665100 00 112344544210
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
..+ . .+.+.+++|+ ..++.+.+++.+++.+|++..+..
T Consensus 247 -------------------~~l-~----------~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~---------- 286 (445)
T PRK12422 247 -------------------QDL-K----------AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA---------- 286 (445)
T ss_pred -------------------HHH-h----------hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----------
Confidence 000 0 1346788999 489999999999999999763322
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~a 606 (686)
..+.++++++++|+.. + ..+.|.|.+++++++...
T Consensus 287 ---~~~~l~~evl~~la~~-~--~~dir~L~g~l~~l~~~~ 321 (445)
T PRK12422 287 ---LSIRIEETALDFLIEA-L--SSNVKSLLHALTLLAKRV 321 (445)
T ss_pred ---cCCCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHH
Confidence 1578999999999996 3 356799999999986443
No 189
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=7.1e-10 Score=124.62 Aligned_cols=179 Identities=15% Similarity=0.279 Sum_probs=113.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHH--HHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVE--SILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~--~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.+++|+|++|+|||+|++++++.+ +..++.+++.++.. .+...-.. ..+..+... ....-+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l~~~~~~~~~~~~~------~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDILQKTHKEIEQFKNE------ICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHHhhhHHHHHHHH------hccCCEEEEec
Confidence 578999999999999999999865 34567777766541 11100000 111111111 12346999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccC
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
|+.+... +..+..|+.+++.. .+... .+|+|++...
T Consensus 215 iq~l~~k------------~~~~e~lf~l~N~~-------------------~~~~k-~iIltsd~~P------------ 250 (450)
T PRK14087 215 VQFLSYK------------EKTNEIFFTIFNNF-------------------IENDK-QLFFSSDKSP------------ 250 (450)
T ss_pred cccccCC------------HHHHHHHHHHHHHH-------------------HHcCC-cEEEECCCCH------------
Confidence 9998643 12677777777611 01111 2344544210
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHH
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~ 561 (686)
..+ ..+.+.+++|| ..++.+.+++.+++.+|+++.+.
T Consensus 251 ------------------------~~l----------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~------- 289 (450)
T PRK14087 251 ------------------------ELL----------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK------- 289 (450)
T ss_pred ------------------------HHH----------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH-------
Confidence 000 12447788898 67899999999999999986322
Q ss_pred HHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 562 KMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 562 ~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
..|..+.++++++++|++.. ...+|.|.+++.+++..+..
T Consensus 290 ----~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 290 ----NQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred ----hcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhc
Confidence 22444579999999999963 45689999999998755544
No 190
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=6e-10 Score=110.22 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=93.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEecccccccCcccccHHHHHHHHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (686)
..+||+||+|+|||++|+.+++.+... +..++.. .+..+. ..++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~~~~---~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQSIKV---DQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCcCCH---HHHHHHHHH
Confidence 579999999999999999999887431 2222111 111221 233333333
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEcc
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~t 466 (686)
.......+...||+|||+|++... .++.||+.||. ...+.+||++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~---------------------~~~~~~~il~ 132 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE---------------------PPPNTLFILI 132 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222112245679999999999887 89999999982 1123455555
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH
Q 005637 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (686)
Q Consensus 467 gn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~ 546 (686)
++.. ..+.+.+.+|.. ++.|.+++.+++.
T Consensus 133 ~~~~--------------------------------------------------~~l~~~i~sr~~-~~~~~~~~~~~~~ 161 (188)
T TIGR00678 133 TPSP--------------------------------------------------EKLLPTIRSRCQ-VLPFPPLSEEALL 161 (188)
T ss_pred ECCh--------------------------------------------------HhChHHHHhhcE-EeeCCCCCHHHHH
Confidence 4410 013466778885 8999999999998
Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 547 ~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
+++... | ++++++++|++.
T Consensus 162 ~~l~~~---------------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 162 QWLIRQ---------------G----ISEEAAELLLAL 180 (188)
T ss_pred HHHHHc---------------C----CCHHHHHHHHHH
Confidence 888641 2 688999999986
No 191
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.10 E-value=7.5e-10 Score=124.94 Aligned_cols=255 Identities=20% Similarity=0.277 Sum_probs=151.0
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
|...|...|.|.+.+|.-|.-.+...-. +. ++...+. ...-||+++|.|||||+.+.++.
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~LfGGv~-------K~--a~eg~~l-----------RGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLFGGVH-------KS--AGEGTSL-----------RGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHhCCcc-------cc--CCCCccc-----------cCCceEEEeCCCCccHHHHHHHH
Confidence 5555666799999999988877752111 11 0000011 11279999999999999999999
Q ss_pred HHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+..+....+. ++..-+.+|..-.-+.+-...-|.-..+.+-.+.+||-.|||+||+..+ -|.+|+
T Consensus 399 ~~fsPR~vYt-sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 399 CAFSPRSVYT-SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred hccCCcceEe-cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 9988655442 2211111222111111100111111112333567899999999999776 699999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
++||...++|..-|... .++.+ .-+|+++|+.+ | ..+....+.
T Consensus 464 EAMEQQtISIaKAGv~a-------TLnAR-tSIlAAANPv~--------------G---------------hYdR~ktl~ 506 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVVA-------TLNAR-TSILAAANPVG--------------G---------------HYDRKKTLR 506 (764)
T ss_pred HHHHhheehheecceEE-------eecch-hhhhhhcCCcC--------------C---------------ccccccchh
Confidence 99998888876666332 23332 34556666442 0 011123344
Q ss_pred hhcCchHHHhcCCChhhhcccCeEE-EccCcChHHHHHHHhhhHH-----------------HHHHHHHHHHhhcCCccc
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPVLV-SLLALTENQLVQVLTEPKN-----------------ALGKQYRKMFQMNGVKLH 572 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~iI-~f~pLs~eeL~~IL~~~l~-----------------~L~kq~~~~~~~~gv~l~ 572 (686)
+.++ +.+++++|||.++ .++..++..=..|.++.++ +..++|.+. +. .+...
T Consensus 507 eNi~--------msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~y-AR-~~~P~ 576 (764)
T KOG0480|consen 507 ENIN--------MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRY-AR-NFKPK 576 (764)
T ss_pred hhcC--------CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHH-HH-hcCcc
Confidence 5554 8899999999874 4455555443444443322 122344432 22 56778
Q ss_pred cCHHHHHHHHHhcC--------------CCCCChhHHHHHHHHHHHHHHhcC
Q 005637 573 FTENALRLIAKKAI--------------SKNTGARGLRSLLENILMDAMYEI 610 (686)
Q Consensus 573 ~s~eAl~~La~~a~--------------~~~~GAR~Lr~vIe~il~~al~e~ 610 (686)
++.+|.+.|.++ | .|..-+|+|+++|. +.+|+++.
T Consensus 577 ls~ea~~~lve~-Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 577 LSKEASEMLVEK-YKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred ccHHHHHHHHHH-HHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 899999988875 3 34566899999996 45666554
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.10 E-value=1.7e-09 Score=111.56 Aligned_cols=175 Identities=22% Similarity=0.342 Sum_probs=113.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|.|+.|+.|.+........ .|..|+||+|+.|||||+++|++...+ +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G----------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcC----------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 699999999998877533221 123899999999999999999998876 5
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
..++.+...++.. ...++ +.+...+ .+=|||+|++.- .. ++.-...|-.+|||
T Consensus 81 LRlIev~k~~L~~-------l~~l~-~~l~~~~------~kFIlf~DDLsF--e~-----------~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 81 LRLIEVSKEDLGD-------LPELL-DLLRDRP------YKFILFCDDLSF--EE-----------GDTEYKALKSVLEG 133 (249)
T ss_pred ceEEEECHHHhcc-------HHHHH-HHHhcCC------CCEEEEecCCCC--CC-----------CcHHHHHHHHHhcC
Confidence 6788888877652 22333 3333322 245999997542 11 12256788889997
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccH-HHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcC
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~L-ek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (686)
.+- --..|+++.+|+|-..| .+...++.. . .-+.+.
T Consensus 134 gle-----------------~~P~NvliyATSNRRHLv~E~~~d~~~----~----------------------~~~eih 170 (249)
T PF05673_consen 134 GLE-----------------ARPDNVLIYATSNRRHLVPESFSDRED----I----------------------QDDEIH 170 (249)
T ss_pred ccc-----------------cCCCcEEEEEecchhhccchhhhhccC----C----------------------CccccC
Confidence 542 24678999999985432 111111100 0 001122
Q ss_pred chHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhH
Q 005637 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (686)
Q Consensus 515 ~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l 553 (686)
+.|.+...+ .|..||..+|.|.+++.++..+|++..+
T Consensus 171 ~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 171 PSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred cchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 222222222 2889999999999999999999998743
No 193
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.8e-09 Score=116.85 Aligned_cols=210 Identities=21% Similarity=0.207 Sum_probs=133.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
+.+.|.-++++...+...+.. -.|.+++++||||||||.+++.+++++..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 677888888888877522221 013679999999999999999999888443
Q ss_pred ----EEEEeccccccc--------------CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCC
Q 005637 358 ----FVIADATTLTQA--------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (686)
Q Consensus 358 ----fv~v~~s~l~~s--------------gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d 419 (686)
++.+||..+..+ -..|......+..+.+.- -.....-||+|||+|.|....+
T Consensus 71 ~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~---~~~~~~~IvvLDEid~L~~~~~------- 140 (366)
T COG1474 71 ANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL---SKKGKTVIVILDEVDALVDKDG------- 140 (366)
T ss_pred ccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH---HhcCCeEEEEEcchhhhccccc-------
Confidence 899999877421 011111111111111110 0123456899999999988621
Q ss_pred CchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005637 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (686)
Q Consensus 420 ~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~ 499 (686)
.++-.|+++.+ .. ..++.+|+.+|..++.+.+
T Consensus 141 ----~~LY~L~r~~~--------------------~~-~~~v~vi~i~n~~~~~~~l----------------------- 172 (366)
T COG1474 141 ----EVLYSLLRAPG--------------------EN-KVKVSIIAVSNDDKFLDYL----------------------- 172 (366)
T ss_pred ----hHHHHHHhhcc--------------------cc-ceeEEEEEEeccHHHHHHh-----------------------
Confidence 15555555544 01 3446777777643332222
Q ss_pred CchhhhHHHHHhhcCchHHHhcCCChhhhccc-CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH
Q 005637 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (686)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl 578 (686)
.|-+.+++ +..|.|+||+.+|+..|+....+.- -..-.++++++
T Consensus 173 ------------------------d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-----------~~~~~~~~~vl 217 (366)
T COG1474 173 ------------------------DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-----------FSAGVIDDDVL 217 (366)
T ss_pred ------------------------hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-----------ccCCCcCccHH
Confidence 23344555 3358999999999999998633221 12457899999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhc
Q 005637 579 RLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~vIe~il~~al~e 609 (686)
++++..+....+.||---.++++...-|-.+
T Consensus 218 ~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 218 KLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 9999886666667888877887776655443
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=8e-10 Score=100.80 Aligned_cols=86 Identities=35% Similarity=0.609 Sum_probs=57.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHH-HHhhcchhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYK-LLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~-l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
.+++++||||||||++++.+++.+ +.+++.+++...... .... ..... .............+++|+|||++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVVA---ELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHHH---HHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 689999999999999999999998 888999998776421 1110 00000 000000111224578999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+... ....++..++
T Consensus 96 ~~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 96 LSRG--------------AQNALLRVLE 109 (151)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 8554 6677888877
No 195
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.5e-09 Score=116.07 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=98.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.|..++.... -+..+||+||+|+||+++|.++|+.+...
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-------------------------------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-------------------------------LHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 37999999999999885211 12569999999999999999999987321
Q ss_pred E----E-----------EEeccc-----------c--ccc----------CcccccHHHHHHHHHhhcchhhHhhcCcEE
Q 005637 358 F----V-----------IADATT-----------L--TQA----------GYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (686)
Q Consensus 358 f----v-----------~v~~s~-----------l--~~s----------gyvG~~~~~~l~~l~~~a~~~ve~a~~gIL 399 (686)
- . .-+|.. + ..+ .-++. ..++++............+-|+
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~V---dqiR~l~~~~~~~~~~~~~kVv 145 (365)
T PRK07471 69 PPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITV---DEVRELISFFGLTAAEGGWRVV 145 (365)
T ss_pred CCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccH---HHHHHHHHHhCcCcccCCCEEE
Confidence 0 0 000100 0 000 01111 2344443332222223456799
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhc
Q 005637 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (686)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r 479 (686)
+|||+|.+... .+++||+.+|. ...+++||++++..+
T Consensus 146 iIDead~m~~~--------------aanaLLK~LEe---------------------pp~~~~~IL~t~~~~-------- 182 (365)
T PRK07471 146 IVDTADEMNAN--------------AANALLKVLEE---------------------PPARSLFLLVSHAPA-------- 182 (365)
T ss_pred EEechHhcCHH--------------HHHHHHHHHhc---------------------CCCCeEEEEEECCch--------
Confidence 99999999887 99999999992 112355665554211
Q ss_pred cccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 480 ~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+.|.+++|.. .+.|.+++.+++.+++.+
T Consensus 183 ------------------------------------------~llpti~SRc~-~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 183 ------------------------------------------RLLPTIRSRCR-KLRLRPLAPEDVIDALAA 211 (365)
T ss_pred ------------------------------------------hchHHhhccce-EEECCCCCHHHHHHHHHH
Confidence 12355777775 799999999999998875
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.05 E-value=4.5e-09 Score=114.21 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=46.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.|+|++++++.+...+..... +.. .....++|+||||+|||++|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~----g~~----------------------~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ----GLE----------------------ERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh----cCC----------------------CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999988752221 100 01267899999999999999999999965
Q ss_pred ------CEEEEec
Q 005637 357 ------PFVIADA 363 (686)
Q Consensus 357 ------pfv~v~~ 363 (686)
+++.+.+
T Consensus 106 s~t~eG~~Y~~~~ 118 (361)
T smart00763 106 SKTPEGRRYTFKW 118 (361)
T ss_pred cccccCceEEEEe
Confidence 8888877
No 197
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=1.8e-09 Score=128.28 Aligned_cols=169 Identities=21% Similarity=0.285 Sum_probs=118.7
Q ss_pred ccccCceEEEEc--cCCChHHHHHHHHHHhc-----CCCEEEEecccccccCccccc-HHHHHHHHHhhcchhhHhhcCc
Q 005637 326 VELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQG 397 (686)
Q Consensus 326 v~~~~~~vLL~G--PPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~ve~a~~g 397 (686)
+..|.-+-+..| |++.|||++|+++|+.+ +.+++.+|+++.. |.+ +...+.......+. ......
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~--~~~~~K 632 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPI--GGASFK 632 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCc--CCCCCE
Confidence 445667777889 99999999999999997 4579999998742 211 12222222222211 011236
Q ss_pred EEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHH
Q 005637 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (686)
Q Consensus 398 ILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~ 477 (686)
|++|||+|.|+.. .|++|++.||. ...++.||+++|...
T Consensus 633 VvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~------ 671 (846)
T PRK04132 633 IIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSS------ 671 (846)
T ss_pred EEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChh------
Confidence 9999999999887 99999999991 123577787776311
Q ss_pred hccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHH
Q 005637 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALG 557 (686)
Q Consensus 478 ~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~ 557 (686)
.+.|++++|.. ++.|.+++.+++..++...+..
T Consensus 672 --------------------------------------------kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~~~-- 704 (846)
T PRK04132 672 --------------------------------------------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAEN-- 704 (846)
T ss_pred --------------------------------------------hCchHHhhhce-EEeCCCCCHHHHHHHHHHHHHh--
Confidence 14577889975 7999999999999888753221
Q ss_pred HHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 558 KQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 558 kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
. .+.++++++..|+..+ +++.|..-+.+|.+.
T Consensus 705 ---------E--gi~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 705 ---------E--GLELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred ---------c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 4668999999999873 555688878887654
No 198
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.7e-09 Score=114.59 Aligned_cols=85 Identities=31% Similarity=0.418 Sum_probs=59.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC------------------------CCEEEEecccccccCcccccHHHHHHHHHhhc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~------------------------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a 387 (686)
.+||+||||+|||++|.++|+.+. ..++.+++++..... + ....++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i---~~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-I---IVEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-c---hHHHHHHHHHHh
Confidence 499999999999999999999886 356666666543211 1 123344443332
Q ss_pred chhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 388 ~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
......+..-|++|||+|.++.. .+++|++.||
T Consensus 102 ~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE 134 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE 134 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc
Confidence 21111245579999999999987 9999999998
No 199
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.6e-09 Score=115.84 Aligned_cols=151 Identities=18% Similarity=0.287 Sum_probs=98.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+.+++.+..++.... -+..+||+||+|+|||++|+++|+.+...
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-------------------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-------------------------------FSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 37999999999998874100 12567999999999999999999976321
Q ss_pred --------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 358 --------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 358 --------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
+..+... +...++. ..++++..........+..-|++|||+|++... .+++|
T Consensus 54 ~~~~~h~D~~~~~~~---~~~~i~v---~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naL 113 (313)
T PRK05564 54 SQQREYVDIIEFKPI---NKKSIGV---DDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAF 113 (313)
T ss_pred CCCCCCCCeEEeccc---cCCCCCH---HHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHH
Confidence 2222211 0111121 234444442211111245679999999999887 99999
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
|+.||. ...+++||++++..+
T Consensus 114 LK~LEe---------------------pp~~t~~il~~~~~~-------------------------------------- 134 (313)
T PRK05564 114 LKTIEE---------------------PPKGVFIILLCENLE-------------------------------------- 134 (313)
T ss_pred HHHhcC---------------------CCCCeEEEEEeCChH--------------------------------------
Confidence 999992 122355555543110
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+.|.+++|.. ++.|.+++++++.+.+..
T Consensus 135 ------------~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 135 ------------QILDTIKSRCQ-IYKLNRLSKEEIEKFISY 163 (313)
T ss_pred ------------hCcHHHHhhce-eeeCCCcCHHHHHHHHHH
Confidence 14466788885 899999999999887764
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.03 E-value=6.2e-09 Score=119.29 Aligned_cols=230 Identities=18% Similarity=0.278 Sum_probs=135.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCC-CCCCCcccc-ccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTT-DGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~-~~~~~~~v~-~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
++|-+..-+.+...+..+-.-.+.....++........+. +...-.... .++..+||+||||-|||+||+.+|+.+|.
T Consensus 273 LLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 273 LLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred HhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 5677777777776665443333332222221111000000 000011111 23477889999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh--
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 434 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-- 434 (686)
..+.+++++-.. +..+...+..+.......-+..+|..|+|||||-..+. ..+.||.++.
T Consensus 353 sVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~a~ 414 (877)
T KOG1969|consen 353 SVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVKAT 414 (877)
T ss_pred eEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHHhh
Confidence 999999998653 22334444444443322112356788999999997765 8999999987
Q ss_pred CceeecCCC---CCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 435 GTVVNVPEK---GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 435 g~~v~vp~~---G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
+...+-+.. +..++.++ ..-++-||-||.--+
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~---~~L~RPIICICNdLY------------------------------------------ 449 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRS---KLLTRPIICICNDLY------------------------------------------ 449 (877)
T ss_pred cchhhcCcccchhhhhhhcc---ccccCCEEEEecCcc------------------------------------------
Confidence 322211111 11222222 234555666664211
Q ss_pred hcCchHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCC
Q 005637 512 TVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKN 589 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~ 589 (686)
.|.|+ .-+-.++.|.+.+..-+++-|+..++.- .+.++..++..|.++.
T Consensus 450 ------------aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE-------------~mr~d~~aL~~L~el~---- 500 (877)
T KOG1969|consen 450 ------------APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE-------------NMRADSKALNALCELT---- 500 (877)
T ss_pred ------------chhhhhcccceEEEEecCCChhHHHHHHHHHHhhh-------------cCCCCHHHHHHHHHHh----
Confidence 12221 1244589999999998887776644332 6788999999999973
Q ss_pred CChhHHHHHHHHH
Q 005637 590 TGARGLRSLLENI 602 (686)
Q Consensus 590 ~GAR~Lr~vIe~i 602 (686)
.-.+|++|..+
T Consensus 501 --~~DIRsCINtL 511 (877)
T KOG1969|consen 501 --QNDIRSCINTL 511 (877)
T ss_pred --cchHHHHHHHH
Confidence 13677777764
No 201
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.03 E-value=1.3e-10 Score=109.60 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=54.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+|||+|++||||+++|++|..... .+|+.++|..+. .+++. .+.+|+|||+|||.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~-------~a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLE-------QAKGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHH-------HCTTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHH-------HcCCCEEEECChHHC
Confidence 7899999999999999999988764 367777776542 12222 246799999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
... .|..|+..++
T Consensus 82 ~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 82 SPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -HH--------------HHHHHHHHHH
T ss_pred CHH--------------HHHHHHHHHH
Confidence 988 9999999998
No 202
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.02 E-value=6.3e-10 Score=126.34 Aligned_cols=230 Identities=19% Similarity=0.298 Sum_probs=133.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
|...+...|.|.|.+|+.+.-++...-.. . ....+.. ...-||||+|-||||||.+.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k-------~--~~~~~~~-----------R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRK-------E--DEKSGRF-----------RGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcc-------c--ccccccc-----------cccceEEEecCCCcCHHHHHHHH
Confidence 44555667999999999988777521110 0 0000001 11279999999999999999999
Q ss_pred HHhcCCCEEEEecccccccC---cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHH
Q 005637 351 ARYVNVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (686)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sg---yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (686)
++.+..-.+. +...-.+.| |+-.+. ..+.++.. .+.+..+.+||-.|||+||+..+ .++
T Consensus 483 ~~l~pRg~yT-SGkGsSavGLTayVtrd~--dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------------trS 544 (804)
T KOG0478|consen 483 HRLLPRGVYT-SGKGSSAVGLTAYVTKDP--DTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------------TRS 544 (804)
T ss_pred HHhCCcceee-cCCccchhcceeeEEecC--ccceeeee-cCcEEEcCCceEEchhhhhhhHH--------------HHH
Confidence 9998543321 111110011 222111 11112111 13344567899999999999876 899
Q ss_pred HHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHH
Q 005637 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (686)
Q Consensus 428 ~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~ 507 (686)
.|+++||...++|+..|.+... +.+ .-+++++|..+ + ......
T Consensus 545 vLhEvMEQQTvSIAKAGII~sL-------NAR-~SVLAaANP~~-----------s------------------kynp~k 587 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASL-------NAR-CSVLAAANPIR-----------S------------------KYNPNK 587 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeec-------ccc-ceeeeeecccc-----------c------------------cCCCCC
Confidence 9999999989999888866532 222 44566666431 0 011122
Q ss_pred HHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHH-----------------HHHHHHHHhhcCCc
Q 005637 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL-----------------GKQYRKMFQMNGVK 570 (686)
Q Consensus 508 ~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L-----------------~kq~~~~~~~~gv~ 570 (686)
.+.+.+. +.|.|++|||.|+.+.+--.|..-.-|..++-.| .+-|.. .+.+.+.
T Consensus 588 ~i~eNI~--------LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~ 658 (804)
T KOG0478|consen 588 SIIENIN--------LPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIH 658 (804)
T ss_pred chhhccC--------CChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCC
Confidence 3444444 7899999999875544433333222222222221 222222 2345567
Q ss_pred cccCHHHHHHHHHh
Q 005637 571 LHFTENALRLIAKK 584 (686)
Q Consensus 571 l~~s~eAl~~La~~ 584 (686)
..++++|...|...
T Consensus 659 p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 659 PALSPEASQALIQA 672 (804)
T ss_pred ccccHHHHHHHHHH
Confidence 78899999888775
No 203
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.02 E-value=6.2e-09 Score=108.80 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=80.4
Q ss_pred hcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHH
Q 005637 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE 473 (686)
Q Consensus 394 a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Le 473 (686)
--||||||||++.|.-+ ....|.+.||..+ -.++|+++|-.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~i----------------------aPivifAsNrG--- 335 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESPI----------------------APIVIFASNRG--- 335 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCCC----------------------CceEEEecCCc---
Confidence 35899999999999877 9999999998211 14566777621
Q ss_pred HHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH-HhcCCChhhhcccCeEEEccCcChHHHHHHHhhh
Q 005637 474 KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL-IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (686)
Q Consensus 474 k~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl-~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~ 552 (686)
.+ +++.. .|+ --.|.+|+|+.|+- +|.-.+++++++.+|++..
T Consensus 336 --------~~------~irGt---------------------~d~~sPhGip~dllDRl~-Iirt~~y~~~e~r~Ii~~R 379 (456)
T KOG1942|consen 336 --------MC------TIRGT---------------------EDILSPHGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIR 379 (456)
T ss_pred --------ce------eecCC---------------------cCCCCCCCCCHHHhhhee-EEeeccCCHHHHHHHHHHH
Confidence 01 11110 001 11467899999996 7888999999999999752
Q ss_pred HHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 005637 553 KNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENI 602 (686)
Q Consensus 553 l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~i 602 (686)
.. . -.+.++++++..|++.+ --+.||-+++-+
T Consensus 380 a~-----------~--E~l~~~e~a~~~l~~~g-----t~tsLRy~vqLl 411 (456)
T KOG1942|consen 380 AQ-----------V--EGLQVEEEALDLLAEIG-----TSTSLRYAVQLL 411 (456)
T ss_pred Hh-----------h--hcceecHHHHHHHHhhc-----cchhHHHHHHhc
Confidence 11 1 16889999999999852 236788888743
No 204
>PRK09087 hypothetical protein; Validated
Probab=99.01 E-value=3.4e-09 Score=108.81 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=53.2
Q ss_pred Chhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 005637 524 IPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (686)
Q Consensus 524 ~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~ 601 (686)
.|.+++|+ ..++.+.+++.+++.+|+++.++. ..+.++++++++|+++. . ...|.|..++.+
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------------~~~~l~~ev~~~La~~~-~--r~~~~l~~~l~~ 198 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-------------RQLYVDPHVVYYLVSRM-E--RSLFAAQTIVDR 198 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-------------cCCCCCHHHHHHHHHHh-h--hhHHHHHHHHHH
Confidence 47799999 478999999999999999864322 16789999999999973 3 345788887777
Q ss_pred HHHHHHh
Q 005637 602 ILMDAMY 608 (686)
Q Consensus 602 il~~al~ 608 (686)
+-..++.
T Consensus 199 L~~~~~~ 205 (226)
T PRK09087 199 LDRLALE 205 (226)
T ss_pred HHHHHHH
Confidence 7655544
No 205
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.00 E-value=1.1e-10 Score=126.07 Aligned_cols=258 Identities=21% Similarity=0.276 Sum_probs=129.0
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+.+.+...|+|.+.+|+.|.-.+...... . . ....-.....|+||+|.||||||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~~-------~------~-------~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVEK-------N------D-------PDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--SC-------C------C-------CT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhcccc-------c------c-------ccccccccccceeeccchhhhHHHHHHHH
Confidence 56677778999999999877655311110 0 0 00001122479999999999999999988
Q ss_pred HHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
++.... -+.+++...+..|....-.......-..-..+.+..+.+||++|||+|++... ..+.|+
T Consensus 78 ~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~ 142 (331)
T PF00493_consen 78 AKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALH 142 (331)
T ss_dssp CCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHH
T ss_pred HhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHH
Confidence 776543 33445444333332221100000000111123345678899999999999887 899999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
++||...++|...|-. ... ..++-+++++|+.. ++++.. . .+.
T Consensus 143 eaMEqq~isi~kagi~-------~~l-~ar~svlaa~NP~~-------g~~~~~----~------------------~~~ 185 (331)
T PF00493_consen 143 EAMEQQTISIAKAGIV-------TTL-NARCSVLAAANPKF-------GRYDPN----K------------------SLS 185 (331)
T ss_dssp HHHHCSCEEECTSSSE-------EEE-E---EEEEEE--TT---------S-TT----S-------------------CG
T ss_pred HHHHcCeeccchhhhc-------ccc-cchhhhHHHHhhhh-------hhcchh----h------------------hhH
Confidence 9999777777555422 122 33456677777431 111100 0 011
Q ss_pred hhcCchHHHhcCCChhhhcccCeEEEcc-CcChHHHHHHHh----hhHHH------------------HHHHHHHHHhhc
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPVLVSLL-ALTENQLVQVLT----EPKNA------------------LGKQYRKMFQMN 567 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~iI~f~-pLs~eeL~~IL~----~~l~~------------------L~kq~~~~~~~~ 567 (686)
+.+ .+.+.|++|||.++.+. +.+++.=..|.+ ...+. +.++|-... ..
T Consensus 186 ~ni--------~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya-r~ 256 (331)
T PF00493_consen 186 ENI--------NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA-RQ 256 (331)
T ss_dssp CCT---------S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH-HH
T ss_pred Hhc--------ccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH-Hh
Confidence 111 26789999999887764 444332222332 22111 112333322 22
Q ss_pred CCccccCHHHHHHHHHhcCC------------CCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 568 GVKLHFTENALRLIAKKAIS------------KNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 568 gv~l~~s~eAl~~La~~a~~------------~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
.+...++++|.++|.++ |. ....+|.|..+|+ +..|.+++.-
T Consensus 257 ~~~P~ls~ea~~~I~~~-Yv~lR~~~~~~~~~~~iT~R~LeSLIR--LseA~AKl~l 310 (331)
T PF00493_consen 257 NIHPVLSEEAKELIINY-YVELRKESKSNNKSIPITIRQLESLIR--LSEAHAKLRL 310 (331)
T ss_dssp HC--EE-HHCHHHHHHH-HCCCCHCHHCHSS-B-SSCCCCCHHHH--HHHHHHHCTT
T ss_pred hcccccCHHHHHHHHHH-HHHhcccccccccccccchhhHHHHHH--HHHHHHHHhc
Confidence 45668999999999876 31 1234577777775 3445555443
No 206
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3.4e-09 Score=113.93 Aligned_cols=153 Identities=24% Similarity=0.316 Sum_probs=99.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+||+++++.+..++.... -+..+||+||+|+||+++|+++|+.+...
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-------------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-------------------------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 48999999999999985110 02689999999999999999999887321
Q ss_pred ------------------EEEEeccccccc--------C----------cccccHHHHHHHHHhhcchhhHhhcCcEEEE
Q 005637 358 ------------------FVIADATTLTQA--------G----------YVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (686)
Q Consensus 358 ------------------fv~v~~s~l~~s--------g----------yvG~~~~~~l~~l~~~a~~~ve~a~~gILfI 401 (686)
+..+......+. + .++.+.-+.+...+...+. .+..-|++|
T Consensus 54 ~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~---~~~~kVvII 130 (314)
T PRK07399 54 GSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPL---EAPRKVVVI 130 (314)
T ss_pred CCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcc---cCCceEEEE
Confidence 121111100000 0 0111111122222333222 245679999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccc
Q 005637 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (686)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~ 481 (686)
|++|++... .+++||+.||. - . +.+||+.++..
T Consensus 131 ~~ae~m~~~--------------aaNaLLK~LEE--------------------P-p-~~~fILi~~~~----------- 163 (314)
T PRK07399 131 EDAETMNEA--------------AANALLKTLEE--------------------P-G-NGTLILIAPSP----------- 163 (314)
T ss_pred EchhhcCHH--------------HHHHHHHHHhC--------------------C-C-CCeEEEEECCh-----------
Confidence 999999887 99999999992 0 1 23455544311
Q ss_pred cCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 482 DSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 482 ~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
..+.|.+++|.. ++.|.+++.+++.+++.+
T Consensus 164 ---------------------------------------~~Ll~TI~SRcq-~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 164 ---------------------------------------ESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred ---------------------------------------HhCcHHHHhhce-EEecCCCCHHHHHHHHHH
Confidence 014577888875 799999999999999875
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.3e-09 Score=114.63 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=96.5
Q ss_pred ccC-hHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 279 VvG-qd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
|+| |+.+++.+..++.... -+..+||+||+|+||+++|+++|+.+..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-------------------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-------------------------------LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 9999999998874100 12567999999999999999999887321
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
+..+... ...++. ..++++..........+..-|++|||+|++...
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~----~~~i~i---d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~--- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD----GQSIKK---DQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS--- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccc----cccCCH---HHHHHHHHHHhhCCcccCceEEEeehHhhhCHH---
Confidence 1111110 001111 233333322111111245579999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+++||+.||. ...+++||++++..
T Consensus 126 -----------a~NaLLK~LEE---------------------Pp~~~~~Il~t~~~----------------------- 150 (329)
T PRK08058 126 -----------AANSLLKFLEE---------------------PSGGTTAILLTENK----------------------- 150 (329)
T ss_pred -----------HHHHHHHHhcC---------------------CCCCceEEEEeCCh-----------------------
Confidence 99999999992 12346666665411
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
..+.|.+++|.- ++.|.+++.+++.+++..
T Consensus 151 ---------------------------~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 151 ---------------------------HQILPTILSRCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---------------------------HhCcHHHHhhce-eeeCCCCCHHHHHHHHHH
Confidence 014466778876 799999999999887764
No 208
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=2.8e-09 Score=111.32 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=119.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH------hcCCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR------YVNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~------~l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILf 400 (686)
.++||.||+|.||+.||+.|-+ .+..+|+.++|..+.. +..+|.. ...++..-....+.+..+.+|++|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEe
Confidence 6899999999999999999843 3467899999988852 1111211 111111111123445677889999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcc
Q 005637 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (686)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~ 480 (686)
+|||..+... -|..||+.+|.+.+. --+..+.+.-|+.-| +|+..||...+.++.
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~-------pfgsdr~v~sdfqli----agtvrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY-------PFGSDRQVSSDFQLI----AGTVRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC-------CCCCccccccchHHh----hhhHHHHHHHHhccc
Confidence 9999999776 899999999844332 111222223333322 677788888888776
Q ss_pred ccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHH
Q 005637 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 481 ~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~ 560 (686)
|+.+++-.-+. ..+ -.|.|..|-.+ ++--+...+...
T Consensus 343 fredl~arinl---------------------------wtf-~lpgl~qr~ed-----------iepnldyelerh---- 379 (531)
T COG4650 343 FREDLYARINL---------------------------WTF-TLPGLRQRQED-----------IEPNLDYELERH---- 379 (531)
T ss_pred hHHHHHHhhhe---------------------------eee-eccccccCccc-----------cCCCccHHHHHH----
Confidence 65544321111 000 01444444432 222222211111
Q ss_pred HHHHhhcCCccccCHHHHHHHHHhcC----CCCCChhHHHHHHHHHHH
Q 005637 561 RKMFQMNGVKLHFTENALRLIAKKAI----SKNTGARGLRSLLENILM 604 (686)
Q Consensus 561 ~~~~~~~gv~l~~s~eAl~~La~~a~----~~~~GAR~Lr~vIe~il~ 604 (686)
....|-.+.|..+|.+.....+- .|..+-|+|-..|.++..
T Consensus 380 ---a~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmat 424 (531)
T COG4650 380 ---ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 (531)
T ss_pred ---HHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHH
Confidence 22346688888888877665433 356667999888887654
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.8e-09 Score=117.60 Aligned_cols=195 Identities=23% Similarity=0.315 Sum_probs=127.6
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHhcC----CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 328 LEKSNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
+...++||.||+|+|||.|++++++++. ..+..++|+.+.... -+...+.+...|..+-+ ..|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEEEEcc
Confidence 4458999999999999999999999884 357789999886432 22334555566665543 5789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccC
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
+|.+....+..+++-++..+.....|-+++... .-+.+.+.||++++--
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y------------------~~~~~~ia~Iat~qe~------------- 551 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIY------------------LKRNRKIAVIATGQEL------------- 551 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHH------------------HccCcEEEEEEechhh-------------
Confidence 999987433323333333333333333554411 0112236788887610
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHH
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~ 563 (686)
..+ ..++ +.| .+|+.++.++++...+..+||+..+...
T Consensus 552 -------------------qtl-~~~L------------~s~---~~Fq~~~~L~ap~~~~R~~IL~~~~s~~------- 589 (952)
T KOG0735|consen 552 -------------------QTL-NPLL------------VSP---LLFQIVIALPAPAVTRRKEILTTIFSKN------- 589 (952)
T ss_pred -------------------hhc-Chhh------------cCc---cceEEEEecCCcchhHHHHHHHHHHHhh-------
Confidence 000 0000 112 2789999999999999999998743322
Q ss_pred HhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhc
Q 005637 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 564 ~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e 609 (686)
....+.+-++.++.+ +.++-++.|.-.++|++..+..+
T Consensus 590 ------~~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~le 627 (952)
T KOG0735|consen 590 ------LSDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFLE 627 (952)
T ss_pred ------hhhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHHH
Confidence 123445557777775 68888999999999999988843
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.93 E-value=1e-08 Score=99.95 Aligned_cols=104 Identities=29% Similarity=0.435 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC----
Q 005637 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV---- 356 (686)
Q Consensus 281 Gqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~---- 356 (686)
||+++++.|..++..... +..+||+||+|+||+++|+++|+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l-------------------------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-------------------------------PHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 899999999988852111 256899999999999999999987722
Q ss_pred -------------------CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC
Q 005637 357 -------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (686)
Q Consensus 357 -------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~ 417 (686)
.+..++..... ..++. ..++++..........+..-|++|||+|+|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~i~i---~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKK--KSIKI---DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSS--SSBSH---HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEeccccc--chhhH---HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 13333332210 01222 334444443322222345679999999999988
Q ss_pred CCCchHHHHHHHHHHHh
Q 005637 418 RDVSGEGVQQALLKMLE 434 (686)
Q Consensus 418 ~d~~~e~vq~~LL~lLE 434 (686)
.+++||+.||
T Consensus 118 -------a~NaLLK~LE 127 (162)
T PF13177_consen 118 -------AQNALLKTLE 127 (162)
T ss_dssp -------HHHHHHHHHH
T ss_pred -------HHHHHHHHhc
Confidence 9999999999
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=6.7e-08 Score=100.16 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=52.5
Q ss_pred hhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 005637 526 EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 526 ELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
.+.+|+...+.+++++.+|+.+++...+... .......+++++++.|.+.+ ++..|.+..++..++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~---------g~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA---------GNRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHHHH
Confidence 4778888889999999999999887633221 00123468999999999963 22357888888888777
Q ss_pred HHhc
Q 005637 606 AMYE 609 (686)
Q Consensus 606 al~e 609 (686)
+..+
T Consensus 246 a~~~ 249 (269)
T TIGR03015 246 AFLE 249 (269)
T ss_pred HHHc
Confidence 6654
No 212
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.90 E-value=1.6e-08 Score=116.77 Aligned_cols=196 Identities=11% Similarity=0.088 Sum_probs=125.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEecccccccCcccc-cHHHHHHHHH-hhcchhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGE-DVESILYKLL-TVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l~~sgyvG~-~~~~~l~~l~-~~a~~~ve~a~~gILfIDEIDk 406 (686)
++||+-|+.||+|++++++++..+.. ||+.+--+.- +...+|- +.+..+..=- .-.++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t-~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIA-DDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCc-HHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 78999999999999999999999854 7765443321 1233442 2222221111 1235667788999999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
+.+. +++.|++.||.+.++|.-.|.. .....++++|++-+.. .
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s--------~~~Pa~F~LIat~~~~---------------~ 147 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLA--------LRLPARFGLVALDEGA---------------E 147 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcE--------EecCCCcEEEecCCCh---------------h
Confidence 9988 9999999999666665333311 1123457777652200 0
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhh
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~ 566 (686)
..+.+++.++.||+..|.+..++..+..+.... ...+ ...++++
T Consensus 148 --------------------------------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~-~~~I-~~AR~rl-- 191 (584)
T PRK13406 148 --------------------------------EDERAPAALADRLAFHLDLDGLALRDAREIPID-ADDI-AAARARL-- 191 (584)
T ss_pred --------------------------------cccCCCHHhHhheEEEEEcCCCChHHhcccCCC-HHHH-HHHHHHH--
Confidence 013477889999999999999988765431111 1111 2222222
Q ss_pred cCCccccCHHHHHHHHHhcCCCCC-ChhHHHHHHHHH
Q 005637 567 NGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENI 602 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~~a~~~~~-GAR~Lr~vIe~i 602 (686)
+ .+.++++.++++++.+...+. +.|....++.-.
T Consensus 192 -~-~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraA 226 (584)
T PRK13406 192 -P-AVGPPPEAIAALCAAAAALGIASLRAPLLALRAA 226 (584)
T ss_pred -c-cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 1 678899999998876555554 567776666643
No 213
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.90 E-value=9.7e-09 Score=112.45 Aligned_cols=210 Identities=22% Similarity=0.280 Sum_probs=128.5
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.+...++|||..|..|.....++ .-.++|+.|+.|||||+++|+||..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P--------------------------------~iggvLI~G~kGtaKSt~~Rala~L 61 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP--------------------------------QIGGALIAGEKGTAKSTLARALADL 61 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc--------------------------------ccceeEEecCCCccHHHHHHHHHHh
Confidence 34556899999999876543211 1279999999999999999999999
Q ss_pred cCCCEEEEecc----c----------------------------ccc------cC-cccc-cHHHHHHH-HHhhcchhhH
Q 005637 354 VNVPFVIADAT----T----------------------------LTQ------AG-YVGE-DVESILYK-LLTVSDYNVA 392 (686)
Q Consensus 354 l~~pfv~v~~s----~----------------------------l~~------sg-yvG~-~~~~~l~~-l~~~a~~~ve 392 (686)
+..--+...|. - +.. .. .+|. ++.+.+.. .-.-.++.+.
T Consensus 62 Lp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa 141 (423)
T COG1239 62 LPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLA 141 (423)
T ss_pred CCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchh
Confidence 83221111220 0 000 00 1221 11111110 1112356677
Q ss_pred hhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEee-ccceEEEccCCccc
Q 005637 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID-TKDILFICGGAFVD 471 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vd-tsniIfI~tgn~~~ 471 (686)
.++.||||+||+..|... +|+.||.+++.+.-.|.-+| +.+. ..++++|.|.|...
T Consensus 142 ~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereG---------isi~hpa~fvligTmNPEe 198 (423)
T COG1239 142 RANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREG---------ISIRHPARFLLIGTMNPEE 198 (423)
T ss_pred hccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCc---------eeeccCccEEEEeecCccc
Confidence 899999999999999887 99999999984322222233 2222 35689999988421
Q ss_pred HHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcC-hHHHHHHHh
Q 005637 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLT 550 (686)
Q Consensus 472 Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs-~eeL~~IL~ 550 (686)
..++|.|+.||...|.....+ .++..+|+.
T Consensus 199 -------------------------------------------------GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 199 -------------------------------------------------GELRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred -------------------------------------------------cccchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 126789999998877775544 566677766
Q ss_pred hhHHH------HHHHHHHH--------Hh-hcC-CccccCHHHHHHHHHhcCC
Q 005637 551 EPKNA------LGKQYRKM--------FQ-MNG-VKLHFTENALRLIAKKAIS 587 (686)
Q Consensus 551 ~~l~~------L~kq~~~~--------~~-~~g-v~l~~s~eAl~~La~~a~~ 587 (686)
+.... +.++|... +. ..+ ..+.+++++..++++.+..
T Consensus 230 r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~ 282 (423)
T COG1239 230 RRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCAR 282 (423)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHH
Confidence 54331 22333221 11 122 3567888888888886543
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.84 E-value=5.5e-08 Score=99.69 Aligned_cols=173 Identities=21% Similarity=0.341 Sum_probs=114.3
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---C
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (686)
++|.|..|+.|.+.-..... + .|-.||||||.-||||++|+||+-.++ +
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~----G------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g 113 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAE----G------------------------LPANNVLLWGARGTGKSSLVKALLNEYADEG 113 (287)
T ss_pred HhCchHHHHHHHHHHHHHHc----C------------------------CcccceEEecCCCCChHHHHHHHHHHHHhcC
Confidence 69999999988876541111 1 123899999999999999999997666 4
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
..+++|+-.++.. ...++..+ +..+ ++=|||+|+.-- + .++....+|-.+|||
T Consensus 114 lrLVEV~k~dl~~-------Lp~l~~~L-r~~~------~kFIlFcDDLSF---e----------~gd~~yK~LKs~LeG 166 (287)
T COG2607 114 LRLVEVDKEDLAT-------LPDLVELL-RARP------EKFILFCDDLSF---E----------EGDDAYKALKSALEG 166 (287)
T ss_pred CeEEEEcHHHHhh-------HHHHHHHH-hcCC------ceEEEEecCCCC---C----------CCchHHHHHHHHhcC
Confidence 5688898887752 12333333 3322 345999997533 1 123377888889997
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccH-HHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcC
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~L-ek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (686)
.+. --..|++|.+|+|-.-| -+.+.++ .++ ...+.
T Consensus 167 ~ve-----------------~rP~NVl~YATSNRRHLl~e~~~dn-----~~~----------------------~~eih 202 (287)
T COG2607 167 GVE-----------------GRPANVLFYATSNRRHLLPEDMKDN-----EGS----------------------TGEIH 202 (287)
T ss_pred Ccc-----------------cCCCeEEEEEecCCcccccHhhhhC-----CCc----------------------ccccC
Confidence 542 23568999999984421 1111111 010 02344
Q ss_pred chHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhh
Q 005637 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (686)
Q Consensus 515 ~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~ 552 (686)
+.+.+++.++ |-.||...+.|.+.+.+++.+|+...
T Consensus 203 ~~eaveEKlS--lSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 203 PSEAVEEKLS--LSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred hhHHHHHhhc--hhhhcceeecccCCCHHHHHHHHHHH
Confidence 4445444443 78899999999999999999999863
No 215
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=4.9e-08 Score=105.64 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=86.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEecccccccCcccccHHHHHHHHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (686)
..+||+||+|+|||++|+++|+.+... +..+....- ...++. ..++++...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~i---d~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIKV---DQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCCH---HHHHHHHHH
Confidence 579999999999999999999988431 222211100 011222 234444332
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEcc
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~t 466 (686)
.......+..-|++|||+|++... .+++||+.||. ...+++||++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEE
Confidence 221112245679999999999987 99999999992 1234677777
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH
Q 005637 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (686)
Q Consensus 467 gn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~ 546 (686)
++..+ .+.|.+++|.- ++.|.+++.+++.
T Consensus 143 t~~~~--------------------------------------------------~ll~TI~SRc~-~~~~~~~~~~~~~ 171 (328)
T PRK05707 143 SHQPS--------------------------------------------------RLLPTIKSRCQ-QQACPLPSNEESL 171 (328)
T ss_pred ECChh--------------------------------------------------hCcHHHHhhce-eeeCCCcCHHHHH
Confidence 65211 14577888887 5999999999998
Q ss_pred HHHhh
Q 005637 547 QVLTE 551 (686)
Q Consensus 547 ~IL~~ 551 (686)
+.+.+
T Consensus 172 ~~L~~ 176 (328)
T PRK05707 172 QWLQQ 176 (328)
T ss_pred HHHHH
Confidence 88865
No 216
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.73 E-value=1.5e-07 Score=104.97 Aligned_cols=123 Identities=21% Similarity=0.283 Sum_probs=69.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEecccccc------------cCcccccHH-HHHHHHHhhcchhhHhhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ------------AGYVGEDVE-SILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l~~------------sgyvG~~~~-~~l~~l~~~a~~~ve~a~ 395 (686)
.+++|+||||||||++|+.+|..+.. .+..+++..+.+ ++.+|+... ..+.++...+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 79999999999999999999988743 222333322211 222333211 2233333332211 125
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc----eeecCCCCCccCCCCCceEeeccceEEEccCCccc
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~----~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~ 471 (686)
+.+||||||++...+ .+...|+.+||.. ...+|-.- ....+..+. -..|+.+|+|.|..|
T Consensus 273 ~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~f~-iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTY--SENDEERFY-VPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeeec--ccccccccc-CCCCeEEEEecCccc
Confidence 689999999998764 1677788888821 11111000 000111222 347899999998543
No 217
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-07 Score=103.91 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=56.9
Q ss_pred CChhhhccc--CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHH
Q 005637 523 LIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (686)
Q Consensus 523 f~PELl~R~--~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe 600 (686)
+.|.|++|| ..++.+.+++.+.+.+|+.+... ...+.++++++.+|+++ +..+ .|+|..+++
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~-------------~~~~~i~~ev~~~la~~-~~~n--vReLegaL~ 288 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE-------------DRGIEIPDEVLEFLAKR-LDRN--VRELEGALN 288 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHH-hhcc--HHHHHHHHH
Confidence 447788998 67899999999999999986211 12788999999999997 4444 599999999
Q ss_pred HHHHHHHhc
Q 005637 601 NILMDAMYE 609 (686)
Q Consensus 601 ~il~~al~e 609 (686)
++...+...
T Consensus 289 ~l~~~a~~~ 297 (408)
T COG0593 289 RLDAFALFT 297 (408)
T ss_pred HHHHHHHhc
Confidence 988877654
No 218
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.5e-07 Score=109.53 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=46.0
Q ss_pred CChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc-CHHHHHHHHHhcCCCCCChhHHHHHH
Q 005637 523 LIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF-TENALRLIAKKAISKNTGARGLRSLL 599 (686)
Q Consensus 523 f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~-s~eAl~~La~~a~~~~~GAR~Lr~vI 599 (686)
+.|++++ |+. +|.|+|++..++.+.|...+..-... ......+ ++++++.|+.. ..+.+|..-+.+
T Consensus 256 L~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~-------~~~~~~~p~~~~l~~I~~~---s~GDiRsAIn~L 324 (637)
T TIGR00602 256 MNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK-------NGEKIKVPKKTSVELLCQG---CSGDIRSAINSL 324 (637)
T ss_pred cCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc-------cccccccCCHHHHHHHHHh---CCChHHHHHHHH
Confidence 3377876 443 79999999999888887644332111 1112233 67889998874 456678777777
Q ss_pred HHHHH
Q 005637 600 ENILM 604 (686)
Q Consensus 600 e~il~ 604 (686)
|-.+.
T Consensus 325 Qf~~~ 329 (637)
T TIGR00602 325 QFSSS 329 (637)
T ss_pred HHHHh
Confidence 76543
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.68 E-value=7.2e-08 Score=86.69 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=51.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC---EEEEecccccccC------------cccccHHHHHHHHHhhcchhhHhhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAG------------YVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~v~~s~l~~sg------------yvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
.+++|+||||||||++++.+|..+... ++.+++....... .............+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 689999999999999999999999765 7888877543211 0111112333333333321 23
Q ss_pred CcEEEEccccccchh
Q 005637 396 QGIVYIDEVDKITKK 410 (686)
Q Consensus 396 ~gILfIDEIDkl~~~ 410 (686)
+.+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999999876
No 220
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.67 E-value=1.5e-08 Score=114.19 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=94.0
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+-..+...|+|.+.+|..+.-++...-.+--.+ ..--....|+||+|-|||||+...|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~--------------------khkvRGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGG--------------------KHKVRGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCC--------------------CceeccceeEEEecCCCccHHHHHHHH
Confidence 444555669999999999998886222110000 000111279999999999999999999
Q ss_pred HHhcCCCEEEEecccccccCcccccHHHH-HHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 351 ARYVNVPFVIADATTLTQAGYVGEDVESI-LYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~-l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
++.....++..--..- ..|...+..... .+++--. .+.+..|.+||-+|||+|++... =-..+
T Consensus 503 eK~s~RAV~tTGqGAS-avGLTa~v~KdPvtrEWTLE-aGALVLADkGvClIDEFDKMndq--------------DRtSI 566 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGAS-AVGLTAYVRKDPVTREWTLE-AGALVLADKGVCLIDEFDKMNDQ--------------DRTSI 566 (854)
T ss_pred HhcCcceeEeccCCcc-ccceeEEEeeCCccceeeec-cCeEEEccCceEEeehhhhhccc--------------ccchH
Confidence 9988765543321111 112111111111 1111111 23344578899999999999765 23457
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcc
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~ 470 (686)
-++||...+.|...|..+..+++ +.+|+|+|..
T Consensus 567 HEAMEQQSISISKAGIVtsLqAr--------ctvIAAanPi 599 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGIVTSLQAR--------CTVIAAANPI 599 (854)
T ss_pred HHHHHhcchhhhhhhHHHHHHhh--------hhhheecCCC
Confidence 78888777777666655544433 6777787753
No 221
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-07 Score=107.34 Aligned_cols=147 Identities=17% Similarity=0.309 Sum_probs=104.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
..+||+|+||||||++.+++|++++.+++.+||.++... --+.+ +..+...|.++.. .+++||||-.+|-+.-.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 689999999999999999999999999999999999732 22233 6667777777654 58999999999999754
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~ 490 (686)
.. ++.|.. ++..+-..|.... ...+...++||++++..+
T Consensus 506 ~d---gged~r---l~~~i~~~ls~e~----------------~~~~~~~~ivv~t~~s~~------------------- 544 (953)
T KOG0736|consen 506 QD---GGEDAR---LLKVIRHLLSNED----------------FKFSCPPVIVVATTSSIE------------------- 544 (953)
T ss_pred CC---CchhHH---HHHHHHHHHhccc----------------ccCCCCceEEEEeccccc-------------------
Confidence 22 123322 4444444443100 122344588888766321
Q ss_pred cccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
++.|.+.+-+...+.++.+++++..+|++-..+.
T Consensus 545 -------------------------------~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 545 -------------------------------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred -------------------------------cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 2556677777778999999999999998765443
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.4e-07 Score=98.74 Aligned_cols=131 Identities=20% Similarity=0.203 Sum_probs=83.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC---------------------EEEEecccccccCccccc-----HHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP---------------------FVIADATTLTQAGYVGED-----VESILYKLL 384 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---------------------fv~v~~s~l~~sgyvG~~-----~~~~l~~l~ 384 (686)
..+||+||+|+||+++|+++|+.+... +..+.. .+...|.. .-+.++++.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~----~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF----IPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec----CCCcccccccccccHHHHHHHH
Confidence 569999999999999999999877321 111110 01111100 012344443
Q ss_pred hhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEE
Q 005637 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI 464 (686)
Q Consensus 385 ~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI 464 (686)
.........+..-|++||++|++... .+|+||+.||. ...+++||
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fi 147 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE---------------------PSPGRYLW 147 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC---------------------CCCCCeEE
Confidence 32211111234569999999999887 99999999992 22346666
Q ss_pred ccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHH
Q 005637 465 CGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (686)
Q Consensus 465 ~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~ee 544 (686)
+.++..+ .+.|.+++|.. ++.|.+++.++
T Consensus 148 L~~~~~~--------------------------------------------------~lLpTIrSRCq-~i~~~~~~~~~ 176 (319)
T PRK08769 148 LISAQPA--------------------------------------------------RLPATIRSRCQ-RLEFKLPPAHE 176 (319)
T ss_pred EEECChh--------------------------------------------------hCchHHHhhhe-EeeCCCcCHHH
Confidence 6655211 14477888887 68899999998
Q ss_pred HHHHHhh
Q 005637 545 LVQVLTE 551 (686)
Q Consensus 545 L~~IL~~ 551 (686)
..+.+..
T Consensus 177 ~~~~L~~ 183 (319)
T PRK08769 177 ALAWLLA 183 (319)
T ss_pred HHHHHHH
Confidence 8887764
No 223
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=4.7e-07 Score=97.88 Aligned_cols=129 Identities=21% Similarity=0.338 Sum_probs=85.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEecccccccCcccccHHHHHHHHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (686)
..+||.||+|+||+++|+++|+.+... |..+... +...++.+ .++++...
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~id---~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGVD---QVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCHH---HHHHHHHH
Confidence 678899999999999999999887321 2112110 01122322 34443332
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEcc
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~t 466 (686)
.......+..-|++||++|++... .+|+||+.||. ...+++||++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~ 143 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQ 143 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 211112245579999999999987 99999999992 2345677776
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH
Q 005637 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (686)
Q Consensus 467 gn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~ 546 (686)
++..+ .+.|.+++|.- ++.|.+++.+++.
T Consensus 144 t~~~~--------------------------------------------------~llpTI~SRC~-~~~~~~~~~~~~~ 172 (325)
T PRK06871 144 ADLSA--------------------------------------------------ALLPTIYSRCQ-TWLIHPPEEQQAL 172 (325)
T ss_pred ECChH--------------------------------------------------hCchHHHhhce-EEeCCCCCHHHHH
Confidence 65211 14466778876 6889999999988
Q ss_pred HHHhh
Q 005637 547 QVLTE 551 (686)
Q Consensus 547 ~IL~~ 551 (686)
+.+..
T Consensus 173 ~~L~~ 177 (325)
T PRK06871 173 DWLQA 177 (325)
T ss_pred HHHHH
Confidence 87765
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.2e-06 Score=95.21 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=84.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEecccccccCcccccHHHHHHHHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (686)
..+||+||+|+||+++|+++|+.+... +..+....- ...++.+.-..+.+.+..
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGVDAVREVTEKLYE 102 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCHHHHHHHHHHHhh
Confidence 688999999999999999999887321 111111000 011232222223332332
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEcc
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~t 466 (686)
.+. .+..-|++||++|+|... ..|+||+.||. ...+++||+.
T Consensus 103 ~~~---~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~ 144 (334)
T PRK07993 103 HAR---LGGAKVVWLPDAALLTDA--------------AANALLKTLEE---------------------PPENTWFFLA 144 (334)
T ss_pred ccc---cCCceEEEEcchHhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222 245679999999999988 99999999992 2334777776
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH
Q 005637 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (686)
Q Consensus 467 gn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~ 546 (686)
+...+ .+.|-+++|.- .+.|.+++.+++.
T Consensus 145 t~~~~--------------------------------------------------~lLpTIrSRCq-~~~~~~~~~~~~~ 173 (334)
T PRK07993 145 CREPA--------------------------------------------------RLLATLRSRCR-LHYLAPPPEQYAL 173 (334)
T ss_pred ECChh--------------------------------------------------hChHHHHhccc-cccCCCCCHHHHH
Confidence 55211 14466788887 5799999999988
Q ss_pred HHHhh
Q 005637 547 QVLTE 551 (686)
Q Consensus 547 ~IL~~ 551 (686)
+.+.+
T Consensus 174 ~~L~~ 178 (334)
T PRK07993 174 TWLSR 178 (334)
T ss_pred HHHHH
Confidence 87754
No 225
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=6.6e-07 Score=97.41 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=85.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC-------------------------EEEEeccccc------------------
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP-------------------------FVIADATTLT------------------ 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p-------------------------fv~v~~s~l~------------------ 367 (686)
..+||+||+|+||+++|+.+|+.+... +..+......
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 789999999999999999999887432 1111110000
Q ss_pred ------ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecC
Q 005637 368 ------QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441 (686)
Q Consensus 368 ------~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp 441 (686)
.+..++. +.++++..........+..-|++||++|++... ..|+||+.||+
T Consensus 102 ~~k~~~~~~~I~i---dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE------ 158 (342)
T PRK06964 102 GKKTKAPSKEIKI---EQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE------ 158 (342)
T ss_pred cccccccccccCH---HHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC------
Confidence 0001111 234444333222222345569999999999987 99999999992
Q ss_pred CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhc
Q 005637 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAY 521 (686)
Q Consensus 442 ~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~ 521 (686)
...+++||++++..+
T Consensus 159 ---------------Pp~~t~fiL~t~~~~-------------------------------------------------- 173 (342)
T PRK06964 159 ---------------PPPGTVFLLVSARID-------------------------------------------------- 173 (342)
T ss_pred ---------------CCcCcEEEEEECChh--------------------------------------------------
Confidence 233467777655211
Q ss_pred CCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 522 GLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 522 ~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+.|-+++|.- .+.|.+++.+++.+.+..
T Consensus 174 ~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred hCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 14577888884 788999999999888764
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=1.2e-06 Score=91.69 Aligned_cols=165 Identities=23% Similarity=0.319 Sum_probs=106.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-C--CCEEEEeccccc--------------------ccCcccccHHHHHHHHHhhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-N--VPFVIADATTLT--------------------QAGYVGEDVESILYKLLTVS 387 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~--~pfv~v~~s~l~--------------------~sgyvG~~~~~~l~~l~~~a 387 (686)
.|+++|||+|+||-+.+.++-+.+ | ++-..++..+++ .+.-.|....-.+++++..-
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 699999999999999999997776 2 221122111110 02223433344555555432
Q ss_pred chh--hH---hhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceE
Q 005637 388 DYN--VA---AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDIL 462 (686)
Q Consensus 388 ~~~--ve---~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniI 462 (686)
... ++ ...-.+++|.|+|+++++ +|.+|.+-||. ..+|+.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEk---------------------Ys~~~R 159 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEK---------------------YSSNCR 159 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHH---------------------HhcCce
Confidence 110 00 112358999999999988 99999999991 233455
Q ss_pred EEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh
Q 005637 463 FICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE 542 (686)
Q Consensus 463 fI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~ 542 (686)
+|+..|.. ..+++++++|.= .|..+.+++
T Consensus 160 lIl~cns~--------------------------------------------------SriIepIrSRCl-~iRvpaps~ 188 (351)
T KOG2035|consen 160 LILVCNST--------------------------------------------------SRIIEPIRSRCL-FIRVPAPSD 188 (351)
T ss_pred EEEEecCc--------------------------------------------------ccchhHHhhhee-EEeCCCCCH
Confidence 55544411 024577888874 689999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHH
Q 005637 543 NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (686)
Q Consensus 543 eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe 600 (686)
+|+..++...+..- .+.+.++.+..|++++ -|.||+++=
T Consensus 189 eeI~~vl~~v~~kE-------------~l~lp~~~l~rIa~kS------~~nLRrAll 227 (351)
T KOG2035|consen 189 EEITSVLSKVLKKE-------------GLQLPKELLKRIAEKS------NRNLRRALL 227 (351)
T ss_pred HHHHHHHHHHHHHh-------------cccCcHHHHHHHHHHh------cccHHHHHH
Confidence 99999998643322 6777899999999973 257777763
No 227
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.9e-06 Score=95.43 Aligned_cols=208 Identities=18% Similarity=0.236 Sum_probs=127.3
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
..++|.+.-+..+.+++..|... + ..+.+.+.|-||||||.+...+-..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~----------------~------------t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL----------------N------------TSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc----------------c------------cCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 34789999999999888766542 0 12788999999999999987653333
Q ss_pred --CC-CEEEEecccccccC-------------cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCC
Q 005637 355 --NV-PFVIADATTLTQAG-------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (686)
Q Consensus 355 --~~-pfv~v~~s~l~~sg-------------yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (686)
.. ..+.++|.++..++ ..+...+......|... .......-++++||+|.|...
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h--~~q~k~~~llVlDEmD~L~tr-------- 271 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH--TKQSKFMLLLVLDEMDHLITR-------- 271 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HhcccceEEEEechhhHHhhc--------
Confidence 22 34889999876421 11111111111111110 011123458899999999865
Q ss_pred CCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005637 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (686)
Q Consensus 419 d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~ 498 (686)
-+..|+.+++-. ...++.+++|.-+|.-||-+.
T Consensus 272 ------~~~vLy~lFewp------------------~lp~sr~iLiGiANslDlTdR----------------------- 304 (529)
T KOG2227|consen 272 ------SQTVLYTLFEWP------------------KLPNSRIILIGIANSLDLTDR----------------------- 304 (529)
T ss_pred ------ccceeeeehhcc------------------cCCcceeeeeeehhhhhHHHH-----------------------
Confidence 355666666611 123445555555554443222
Q ss_pred CCchhhhHHHHHhhcCchHHHhcCCChhhhccc---CeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF---PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~---~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
|-|-|..|. +.++.|.||+.+++.+|++..+.+. -...+-+
T Consensus 305 ------------------------~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~------------~t~~~~~ 348 (529)
T KOG2227|consen 305 ------------------------FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE------------STSIFLN 348 (529)
T ss_pred ------------------------HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc------------cccccch
Confidence 223333332 5689999999999999998743332 1344556
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
.|++.+|.+.....+..|.+-.++++.+.=
T Consensus 349 ~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI 378 (529)
T KOG2227|consen 349 AAIELCARKVAAPSGDLRKALDVCRRAIEI 378 (529)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 899999998666666688887777766553
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.9e-06 Score=92.97 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC-----------------------EEEEecccccccCcccccHHHHHHHHHhhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLTVS 387 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p-----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a 387 (686)
..+||.||.|+||+.+|+++|+.+... |..+.... ....++. +.++++....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~v---dqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITV---EQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCH---HHHHHHHHHH
Confidence 679999999999999999999887321 22222110 0111222 2334433222
Q ss_pred chhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccC
Q 005637 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (686)
Q Consensus 388 ~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tg 467 (686)
......+..-|++||++|++... .+|+||+.||. ...+++||+.+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 11111234569999999999987 99999999992 23456777765
Q ss_pred CcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHH
Q 005637 468 AFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ 547 (686)
Q Consensus 468 n~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~ 547 (686)
+..+ .+.|-+++|.- .+.|.+++.+++.+
T Consensus 146 ~~~~--------------------------------------------------~lLpTI~SRCq-~~~~~~~~~~~~~~ 174 (319)
T PRK06090 146 HNQK--------------------------------------------------RLLPTIVSRCQ-QWVVTPPSTAQAMQ 174 (319)
T ss_pred CChh--------------------------------------------------hChHHHHhcce-eEeCCCCCHHHHHH
Confidence 5211 14466778876 68899999998888
Q ss_pred HHhh
Q 005637 548 VLTE 551 (686)
Q Consensus 548 IL~~ 551 (686)
.+..
T Consensus 175 ~L~~ 178 (319)
T PRK06090 175 WLKG 178 (319)
T ss_pred HHHH
Confidence 7764
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.46 E-value=3.1e-07 Score=97.55 Aligned_cols=90 Identities=27% Similarity=0.358 Sum_probs=56.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc-cccccCcccccHHHHHHHHHhhcch--hhH-hhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDY--NVA-AAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l~~l~~~a~~--~ve-~a~~gILfIDEIDk 406 (686)
.|.|++||||||||+...+.|+.+..|.-.-++- ++..+.-.|-++-..-...|..... .+. .+....+++||+|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 4999999999999999999999986641111110 1111222333333333333333221 111 13456899999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
++.. +|++|.+++|
T Consensus 143 MT~~--------------AQnALRRvie 156 (360)
T KOG0990|consen 143 MTRD--------------AQNALRRVIE 156 (360)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 9987 9999999888
No 230
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.41 E-value=1.3e-05 Score=85.57 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=64.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
+..-..+..||...|++.|...-. +....++. ...++||+|+++.|||++++.+
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~~---------------------Rmp~lLivG~snnGKT~Ii~rF 81 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEE-----LLEYPKRH---------------------RMPNLLIVGDSNNGKTMIIERF 81 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHH-----HHhCCccc---------------------CCCceEEecCCCCcHHHHHHHH
Confidence 444445678999999988776542 11111111 1268999999999999999999
Q ss_pred HHhc---------CCCEEEEeccccccc----------CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 351 ARYV---------NVPFVIADATTLTQA----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 351 A~~l---------~~pfv~v~~s~l~~s----------gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.+.. ..|++.+.+..-... =+..+.......++.......+.....-+|+|||++.+...
T Consensus 82 ~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 82 RRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence 8654 236666666433110 00000000001111111112233445679999999997653
No 231
>PRK08116 hypothetical protein; Validated
Probab=98.40 E-value=9.7e-07 Score=93.05 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=53.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCccc---ccHHHHHHHHHhhcchhhHhhcCcEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVG---EDVESILYKLLTVSDYNVAAAQQGIVYI 401 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyvG---~~~~~~l~~l~~~a~~~ve~a~~gILfI 401 (686)
.+++|+|+||||||+||.++++.+ +.+++.++..++.. ..|.+ .+....+.. + ....+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~-l---------~~~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS-L---------VNADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH-h---------cCCCEEEE
Confidence 469999999999999999999886 67788888776542 11111 111111111 1 23369999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
||++.-... +..+..|+.+++
T Consensus 185 DDlg~e~~t------------~~~~~~l~~iin 205 (268)
T PRK08116 185 DDLGAERDT------------EWAREKVYNIID 205 (268)
T ss_pred ecccCCCCC------------HHHHHHHHHHHH
Confidence 999653221 127788888888
No 232
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.39 E-value=2.5e-06 Score=80.11 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=52.7
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
.+...|+..|++.++||+-|++.|..+|..|+.. ..+.+| ..+.|+|+||||||.
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-------------~~p~Kp------------LVlSfHG~tGtGKn~ 68 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-------------PNPRKP------------LVLSFHGWTGTGKNF 68 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-------------CCCCCC------------EEEEeecCCCCcHHH
Confidence 4566799999999999999999999999866542 122222 677799999999999
Q ss_pred HHHHHHHhc
Q 005637 346 LAKTLARYV 354 (686)
Q Consensus 346 LAraLA~~l 354 (686)
+++.||+.+
T Consensus 69 v~~liA~~l 77 (127)
T PF06309_consen 69 VSRLIAEHL 77 (127)
T ss_pred HHHHHHHHH
Confidence 999999986
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.6e-06 Score=93.97 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=56.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-------------------------CEEEEecccc-cccC----cccccHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-------------------------PFVIADATTL-TQAG----YVGEDVESIL 380 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-------------------------pfv~v~~s~l-~~sg----yvG~~~~~~l 380 (686)
..+||+||+|+|||++|+.+|+.+.. .|+.++...- .+.| .++. ..+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~i---d~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKI---DAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCH---HHH
Confidence 67999999999999999999988732 1333333110 0001 1122 234
Q ss_pred HHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 381 ~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+++..........+...|++||+++.+... .++.|++.||
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LE 138 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLE 138 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHH
Confidence 444433322222355679999999999987 9999999998
No 234
>PRK12377 putative replication protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=91.61 Aligned_cols=82 Identities=20% Similarity=0.401 Sum_probs=53.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcc-cccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyv-G~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.+++|+||||||||+||.+|++.+ +..++.++..++.. ..|. +......+..+ ....+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l----------~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL----------CKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh----------cCCCEEEEcC
Confidence 589999999999999999999887 45666677666542 1110 00111111111 2446999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
++..... +..++.|..+++
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~ 190 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIID 190 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHH
Confidence 9765332 116788999998
No 235
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.37 E-value=7.9e-06 Score=86.25 Aligned_cols=62 Identities=26% Similarity=0.459 Sum_probs=47.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
-.+||-.|.++.-..+. -++.+ .+..+.+|+.|+||||||.+|-.+|+.++
T Consensus 41 GmVGQ~~AR~Aagvi~k----mi~eg-----------------------kiaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILK----MIREG-----------------------KIAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred cchhhHHHHHHhHHHHH----HHHcC-----------------------cccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 47999999887666553 11111 12347899999999999999999999996
Q ss_pred CCEEEEecccc
Q 005637 356 VPFVIADATTL 366 (686)
Q Consensus 356 ~pfv~v~~s~l 366 (686)
.||..+.++++
T Consensus 94 tpF~~i~gSEI 104 (454)
T KOG2680|consen 94 TPFTSISGSEI 104 (454)
T ss_pred Cceeeeeccee
Confidence 58888888877
No 236
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=1.8e-06 Score=80.42 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=52.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
..++|.||.|||||++++.+++.+. ..++.+++.+....... . .. +.+.+.... .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5789999999999999999998876 67777888665421110 0 00 112221110 0145799999999984
Q ss_pred hhccccccCCCCchHHHHHHHHHHHh
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
. ....+-.+.|
T Consensus 75 ~---------------~~~~lk~l~d 85 (128)
T PF13173_consen 75 D---------------WEDALKFLVD 85 (128)
T ss_pred c---------------HHHHHHHHHH
Confidence 2 5666666666
No 237
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.6e-05 Score=89.15 Aligned_cols=92 Identities=28% Similarity=0.407 Sum_probs=63.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHH---HHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE---SILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~---~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
..+||.||||+|||.||-.+|...+-||+.+-..+- .+|.++. ..+.+.|+.+- +..-+||++|+|++|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhh
Confidence 789999999999999999999999999998755433 2333322 23344444331 234579999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
..- ..+|.- ..+-++++|+-++.
T Consensus 611 iD~---vpIGPR-fSN~vlQaL~VllK 633 (744)
T KOG0741|consen 611 LDY---VPIGPR-FSNLVLQALLVLLK 633 (744)
T ss_pred hcc---cccCch-hhHHHHHHHHHHhc
Confidence 653 122322 33448888888886
No 238
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.31 E-value=3.7e-07 Score=101.36 Aligned_cols=257 Identities=17% Similarity=0.288 Sum_probs=142.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc-CceEEEEccCCChHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE-KSNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~-~~~vLL~GPPGTGKT~LAra 349 (686)
+.+.+...|+|.+++|+.+.-.+.. +.+++.+- ++.+. .-||||.|.|||.|+.|.|-
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFg-------GsrK~LpD--------------g~~lRGDINVLLLGDPgtAKSQlLKF 383 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFG-------GSRKRLPD--------------GVTLRGDINVLLLGDPGTAKSQLLKF 383 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhc-------CccccCCC--------------cceeccceeEEEecCCchhHHHHHHH
Confidence 4445556799999999999877752 22222111 11111 27999999999999999998
Q ss_pred HHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 350 LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
+-+.....++. +...-..+|....-..+....-|....+....|.+||+.|||+||+..+ ---++
T Consensus 384 vEkvsPIaVYT-SGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAI 448 (729)
T KOG0481|consen 384 VEKVSPIAVYT-SGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAI 448 (729)
T ss_pred HHhcCceEEEe-cCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHH
Confidence 87765333332 2211111222111111111112222233344678899999999999765 34578
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
.++||...+.|...|-.+. -.+.+-+++++|.. .|-..+.. ++
T Consensus 449 HEAMEQQTISIAKAGITT~--------LNSRtSVLAAANpv--------------fGRyDd~K----t~----------- 491 (729)
T KOG0481|consen 449 HEAMEQQTISIAKAGITTT--------LNSRTSVLAAANPV--------------FGRYDDTK----TG----------- 491 (729)
T ss_pred HHHHHhhhHHHhhhcceee--------ecchhhhhhhcCCc--------------cccccccC----Cc-----------
Confidence 8899977777766664432 22334445555532 12111110 00
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhh-HHH----------------------HHHHHHHHHhh
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP-KNA----------------------LGKQYRKMFQM 566 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~-l~~----------------------L~kq~~~~~~~ 566 (686)
-+.++ |.|-+++|||.|+.+.+-..++....+.++ ++- ..++|... -.
T Consensus 492 ~dNID--------f~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Y-cR 562 (729)
T KOG0481|consen 492 EDNID--------FMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQY-CR 562 (729)
T ss_pred ccccc--------hhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHH-HH
Confidence 01111 778999999999888776655433322222 111 11223221 12
Q ss_pred cCCccccCHHHHHHHHHhcC-----------------CCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 567 NGVKLHFTENALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 567 ~gv~l~~s~eAl~~La~~a~-----------------~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
..+...++++|.+.|..+-. .-..-+|+|+.+|. +.++++++.
T Consensus 563 ~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiR--I~ESLAKm~ 622 (729)
T KOG0481|consen 563 LKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIR--IAESLAKME 622 (729)
T ss_pred hccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHH--HHHHHHhhc
Confidence 34566789999988876511 12334688888876 345555543
No 239
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.31 E-value=5.1e-07 Score=100.23 Aligned_cols=138 Identities=21% Similarity=0.317 Sum_probs=86.6
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc-CceEEEEccCCChHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE-KSNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~-~~~vLL~GPPGTGKT~LAra 349 (686)
+.+.+...|+|.+++|+.|.-++...- +... .++..+. .-||+|+|.||+.|+.|.+.
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVGgv----------------d~~~-----~dGMKIRGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVGGV----------------DKSP-----GDGMKIRGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhCCC----------------CCCC-----CCCceeecceeEEecCCCchhHHHHHHH
Confidence 556667789999999999988775110 1000 0111221 26999999999999999999
Q ss_pred HHHhcCCCEEEEecccccccCcccccH---HHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHH
Q 005637 350 LARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (686)
Q Consensus 350 LA~~l~~pfv~v~~s~l~~sgyvG~~~---~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (686)
+.+......+...-.+ + -+|-.. .+.++.-.....+.+..|.+||-.|||+||+... =-
T Consensus 395 i~rlapRgvYTTGrGS---S-GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------DR 456 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRGS---S-GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------DR 456 (721)
T ss_pred HHhcCcccceecCCCC---C-ccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------hh
Confidence 9988755444322211 1 112110 0011111111223445678899999999999775 45
Q ss_pred HHHHHHHhCceeecCCCCCcc
Q 005637 427 QALLKMLEGTVVNVPEKGARK 447 (686)
Q Consensus 427 ~~LL~lLEg~~v~vp~~G~~~ 447 (686)
.++.++||...++|...|..+
T Consensus 457 tAIHEVMEQQTISIaKAGI~T 477 (721)
T KOG0482|consen 457 TAIHEVMEQQTISIAKAGINT 477 (721)
T ss_pred HHHHHHHHhhhhhhhhhcccc
Confidence 678999998888877777544
No 240
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.29 E-value=1.6e-06 Score=105.36 Aligned_cols=146 Identities=26% Similarity=0.375 Sum_probs=105.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-cCcccc----cHH------HHHHHHHhhcchhhHhhcCcEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGE----DVE------SILYKLLTVSDYNVAAAQQGIV 399 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-sgyvG~----~~~------~~l~~l~~~a~~~ve~a~~gIL 399 (686)
.++|+-||+-+|||++.+.+|++.+..|++++..+.++ ..|+|. +.+ ..+-+.++ ++--|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR---------~GyWI 959 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR---------RGYWI 959 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh---------cCcEE
Confidence 68999999999999999999999999999999877654 223332 111 11212222 23469
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHh
Q 005637 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (686)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~ 478 (686)
++||..-.+.. |+.+|-++|| .+.+-||+...+..++ .++++.+|-|+.
T Consensus 960 VLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PH--------p~F~lFATQNpp-------- 1009 (4600)
T COG5271 960 VLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPH--------PNFRLFATQNPP-------- 1009 (4600)
T ss_pred EeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccC--------CCeeEEeecCCC--------
Confidence 99999988776 9999999998 6777777777555444 456666666643
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhh
Q 005637 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (686)
Q Consensus 479 r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~ 552 (686)
.+|+. ++++..+|++||- -++|.+..+++++.|++..
T Consensus 1010 ------g~YgG------------------------------RK~LSrAFRNRFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1010 ------GGYGG------------------------------RKGLSRAFRNRFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred ------ccccc------------------------------hHHHHHHHHhhhH-hhhcccCcHHHHHHHHhcc
Confidence 23321 1245677999995 3789999999999999864
No 241
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=4.2e-06 Score=83.47 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=25.9
Q ss_pred hhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 525 PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
+++.+|+.. +.+.+++.++..+++.+...+ . ..+.++++.++.+...
T Consensus 177 ~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~-----------~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 177 SPLFGRFSH-IELKPLSKEEAREFLKELFKE-----------L-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp STTTT---E-EEE----HHHHHHHHHHHHHC-----------C-------HHHHHHHHHH
T ss_pred Cccccccce-EEEeeCCHHHHHHHHHHHHHH-----------h-hcccCCHHHHHHHHHH
Confidence 558899987 999999999999988763221 1 1235688888888875
No 242
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.1e-05 Score=86.00 Aligned_cols=87 Identities=23% Similarity=0.166 Sum_probs=54.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec--------cc---ccccC---cccccHHHHHHHHHhhcchhhHhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA--------TT---LTQAG---YVGEDVESILYKLLTVSDYNVAAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~--------s~---l~~sg---yvG~~~~~~l~~l~~~a~~~ve~a~~ 396 (686)
..+||+||.|+||+.+|.++|+.+...-..-.| .+ +.+.+ .++.+ .++++..........+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~id---qiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIE---TPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHH---HHHHHHHHHhhCccCCCc
Confidence 688999999999999999999887431000011 00 11111 12222 233333222111112455
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
-|++||++|++..+ .+++||+.||
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LE 120 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLE 120 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhh
Confidence 79999999999988 9999999999
No 243
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=98.38 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=104.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-cCcccccH----HHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDV----ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-sgyvG~~~----~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
.++||-|.||+|||+|..++|+..|..+++++.++-++ -..+|.+. +..+ .+..++..-....++-+++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeehhh
Confidence 68999999999999999999999999999999887653 11122110 1111 11122332333467899999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeec-cceEEEccCCcccHHHHHHhccccC
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDT-KDILFICGGAFVDIEKTISERRQDS 483 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~Vdt-sniIfI~tgn~~~Lek~i~~r~~~~ 483 (686)
-...+ |+..|-..|| .....||+-.. .++. .|+.+.+|-|+.+ ++.
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~---------~f~~HpnfrVFAaqNPq~------qgg--- 1669 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDK---------TFDVHPNFRVFAAQNPQD------QGG--- 1669 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccc---------eeeccCCeeeeeecCchh------cCC---
Confidence 98776 9999999998 44444554332 2222 3566666655321 110
Q ss_pred CCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHH
Q 005637 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (686)
Q Consensus 484 ~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~ 554 (686)
-+++++..|++||. +|....|+.+|+..|+.+...
T Consensus 1670 -----------------------------------GRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1670 -----------------------------------GRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -----------------------------------CcccCCHHHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 12467788999998 788999999999999987543
No 244
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.20 E-value=2.2e-06 Score=74.02 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=58.6
Q ss_pred cChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 540 LTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 540 Ls~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
|+.+++.+|+...++++.+++ ..+|+.+.++++++++|++.+++..+|||+|+++|++.+.+.+++...
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l----~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il 69 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERL----KEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAIL 69 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHH----HHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH----HHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999777776554 447999999999999999999999999999999999999999987644
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.20 E-value=6.7e-06 Score=86.94 Aligned_cols=200 Identities=17% Similarity=0.265 Sum_probs=102.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC-CC--EEEEecccccccCcccccHHHHHHHHHhhc----c---hhhHhhcCcEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN-VP--FVIADATTLTQAGYVGEDVESILYKLLTVS----D---YNVAAAQQGIVY 400 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~-~p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a----~---~~ve~a~~gILf 400 (686)
.++||+||+|||||.+++.+-+.+. .. ...++++..+. ...+...++.. . +.....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 7999999999999999988765553 33 23445544331 23333333221 0 011133557999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcc
Q 005637 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (686)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~ 480 (686)
||++..-.++.. ..+.....|.++|| .|...+.... --....++.||++.+...
T Consensus 106 iDDlN~p~~d~y--------gtq~~iElLRQ~i~--------~~g~yd~~~~-~~~~i~~i~~vaa~~p~~--------- 159 (272)
T PF12775_consen 106 IDDLNMPQPDKY--------GTQPPIELLRQLID--------YGGFYDRKKL-EWKSIEDIQFVAAMNPTG--------- 159 (272)
T ss_dssp EETTT-S---TT--------S--HHHHHHHHHHH--------CSEEECTTTT-EEEEECSEEEEEEESSTT---------
T ss_pred ecccCCCCCCCC--------CCcCHHHHHHHHHH--------hcCcccCCCc-EEEEEeeeEEEEecCCCC---------
Confidence 999998766522 12235666777778 3333333222 235667788888766311
Q ss_pred ccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHH
Q 005637 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 481 ~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~ 560 (686)
| + ..+.|-|++.+. ++.++.++.+.+..|....+....+..
T Consensus 160 -----G-----r----------------------------~~is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~~l~~~ 200 (272)
T PF12775_consen 160 -----G-----R----------------------------NPISPRFLRHFN-ILNIPYPSDESLNTIFSSILQSHLKNG 200 (272)
T ss_dssp -----T-----------------------------------SHHHHHHTTEE-EEE----TCCHHHHHHHHHHHHHTCHT
T ss_pred -----C-----C----------------------------CCCChHHhhheE-EEEecCCChHHHHHHHHHHHhhhcccC
Confidence 0 0 002244555555 789999999999999987544432210
Q ss_pred HHHHhh--cCCcc---ccCHHHHHHHHHhcC------CCCCChhHHHHHHHHHHHH
Q 005637 561 RKMFQM--NGVKL---HFTENALRLIAKKAI------SKNTGARGLRSLLENILMD 605 (686)
Q Consensus 561 ~~~~~~--~gv~l---~~s~eAl~~La~~a~------~~~~GAR~Lr~vIe~il~~ 605 (686)
.+.. .+..- ..+=+..+.+.+.-. .--++.|.|-++++.++..
T Consensus 201 --~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~ 254 (272)
T PF12775_consen 201 --GFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLA 254 (272)
T ss_dssp --TSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhc
Confidence 0000 00000 111222233333211 1234679999999998754
No 246
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=1.1e-06 Score=80.85 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=51.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCEEEEeccccccc-----------C--cc-cccHHHHHHHHHhhcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTLTQA-----------G--YV-GEDVESILYKLLTVSD 388 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--------~~pfv~v~~s~l~~s-----------g--yv-G~~~~~~l~~l~~~a~ 388 (686)
..++++||||+|||++++.+++.+ ..+++.+++...... + .. +.+.......+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~-- 82 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA-- 82 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH--
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH--
Confidence 689999999999999999999877 567777777654310 0 00 01111112111111
Q ss_pred hhhHhhcCcEEEEcccccc-chhccccccCCCCchHHHHHHHHHHHh
Q 005637 389 YNVAAAQQGIVYIDEVDKI-TKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 389 ~~ve~a~~gILfIDEIDkl-~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+......+|+|||+|.+ ... +.+.|..+++
T Consensus 83 --l~~~~~~~lviDe~~~l~~~~--------------~l~~l~~l~~ 113 (131)
T PF13401_consen 83 --LDRRRVVLLVIDEADHLFSDE--------------FLEFLRSLLN 113 (131)
T ss_dssp --HHHCTEEEEEEETTHHHHTHH--------------HHHHHHHHTC
T ss_pred --HHhcCCeEEEEeChHhcCCHH--------------HHHHHHHHHh
Confidence 11222258999999998 433 8888877766
No 247
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.12 E-value=4.3e-05 Score=79.06 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=49.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
..-.+.||+|||||++.|.+|+.+|.+++..+|++-.+ ...+..++...- ..++.+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH
Confidence 45678999999999999999999999999999987653 233444443221 24678999999999876
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.11 E-value=9.1e-06 Score=84.70 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=53.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcc--cccHHHHHHHHHhhcchhhHhhcCcEEEEc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV--GEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyv--G~~~~~~l~~l~~~a~~~ve~a~~gILfID 402 (686)
.+++|+|+||||||+||.++|+.+ +..++.++..++.. ..|. .......+..+ ....+|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l----------~~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL----------SNVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh----------ccCCEEEEe
Confidence 589999999999999999999887 56777777766642 0110 01111112111 234699999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
|++..... +-..+.|..+++
T Consensus 170 Dig~~~~s------------~~~~~~l~~Ii~ 189 (244)
T PRK07952 170 EIGVQTES------------RYEKVIINQIVD 189 (244)
T ss_pred CCCCCCCC------------HHHHHHHHHHHH
Confidence 99986432 114567777887
No 249
>PRK06526 transposase; Provisional
Probab=98.09 E-value=2.1e-06 Score=89.83 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=51.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
...+++|+||||||||+||.+|+..+ +.....+++.++...-..... ...+...+. ......+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~------~l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELV------KLGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHH------HhccCCEEEEcccc
Confidence 34799999999999999999998765 444444555444310000000 000111111 11234699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
.+.... ..++.|..+++
T Consensus 170 ~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH------------HHHHHHHHHHH
Confidence 875431 16677888886
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.09 E-value=4.9e-06 Score=87.12 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=48.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcc-cccHHHHHHHHHhhcchhhHhhcCcEEEEc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV-GEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyv-G~~~~~~l~~l~~~a~~~ve~a~~gILfID 402 (686)
..+++|+||||||||+||-||++.+ +.....+..+++.. ..+- |.. +..+...+. .--+|+||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~l~---------~~dlLIiD 174 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRELK---------KVDLLIID 174 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHHhh---------cCCEEEEe
Confidence 3799999999999999999998887 56777778777642 1111 111 222222222 23599999
Q ss_pred cccccchh
Q 005637 403 EVDKITKK 410 (686)
Q Consensus 403 EIDkl~~~ 410 (686)
|+......
T Consensus 175 DlG~~~~~ 182 (254)
T COG1484 175 DIGYEPFS 182 (254)
T ss_pred cccCccCC
Confidence 99997654
No 251
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.06 E-value=3.7e-05 Score=88.81 Aligned_cols=186 Identities=19% Similarity=0.279 Sum_probs=116.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEeccccccc---------CcccccHH--HHHHHHHhhcch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQA---------GYVGEDVE--SILYKLLTVSDY 389 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----------~~pfv~v~~s~l~~s---------gyvG~~~~--~~l~~l~~~a~~ 389 (686)
+-+.+.|-||||||.+++.+-+.+ ..+|+.+|+-.++.+ .+.|+... ..+..+-..-..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 467899999999999999887654 235889998877531 11222110 001111000000
Q ss_pred hhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 390 NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 390 ~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
.-.....+||+|||.|.|... -|+.|..+++... ...+..++|+-+|.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdWpt------------------~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDWPT------------------LKNSKLVVIAIANT 550 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcCCc------------------CCCCceEEEEeccc
Confidence 012356789999999999886 5778888887311 12234555555553
Q ss_pred ccH-HHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCe-EEEccCcChHHHHH
Q 005637 470 VDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQ 547 (686)
Q Consensus 470 ~~L-ek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~eeL~~ 547 (686)
-|| ++++ .+-.-+|++. -+.|.||+.+++.+
T Consensus 551 mdlPEr~l-----------------------------------------------~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 551 MDLPERLL-----------------------------------------------MNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred ccCHHHHh-----------------------------------------------ccchhhhccceeeecCCCCHHHHHH
Confidence 332 2222 2223456653 49999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhc
Q 005637 548 VLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 548 IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e 609 (686)
|+...+..+ -.|..+|++.++++-..-.+.||.-..+++++..-+-.+
T Consensus 584 Ii~~RL~~~--------------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 584 IISARLKGL--------------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred HHHHhhcch--------------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhh
Confidence 998643322 357889999999985556666888888888876654433
No 252
>PRK08181 transposase; Validated
Probab=98.06 E-value=6.9e-06 Score=86.74 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=54.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---CcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
..+++|+||||||||+||.+++..+ +..++.+++.++... .+........+.. ....-+|+|||
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~----------l~~~dLLIIDD 175 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK----------LDKFDLLILDD 175 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH----------HhcCCEEEEec
Confidence 4689999999999999999998765 556666676665420 0000011111111 12346999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
++..... +..++.|+.+++
T Consensus 176 lg~~~~~------------~~~~~~Lf~lin 194 (269)
T PRK08181 176 LAYVTKD------------QAETSVLFELIS 194 (269)
T ss_pred cccccCC------------HHHHHHHHHHHH
Confidence 9987553 125778888887
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.05 E-value=0.00014 Score=83.58 Aligned_cols=94 Identities=19% Similarity=0.400 Sum_probs=55.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe-cccccc-----cCcccc--------cHHHHHHHH-Hhhcchh-h---
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD-ATTLTQ-----AGYVGE--------DVESILYKL-LTVSDYN-V--- 391 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~-~s~l~~-----sgyvG~--------~~~~~l~~l-~~~a~~~-v--- 391 (686)
..+||+||||||||+++++||++++..+.+-. ...+.. ..|.+. .....+.++ +..+.+. +
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 57889999999999999999999987665532 222111 111111 001222233 2222221 1
Q ss_pred ---HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 392 ---AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 392 ---e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
....+.||+|||+-.+... + . +...+.|.+.+.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~--------~-~-~~f~~~L~~~l~ 161 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR--------D-T-SRFREALRQYLR 161 (519)
T ss_pred CCCcCCCceEEEeeccccccch--------h-H-HHHHHHHHHHHH
Confidence 1235679999999865543 1 1 447777777776
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.05 E-value=8.2e-06 Score=88.53 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=52.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---Cccccc--HHHHHHHHHhhcchhhHhhcCcEEEEc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGED--VESILYKLLTVSDYNVAAAQQGIVYID 402 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG~~--~~~~l~~l~~~a~~~ve~a~~gILfID 402 (686)
.+++|+||||||||+||.++|+.+ +..++.+++.++... ...... ....+..+ ...-+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l----------~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL----------INCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh----------ccCCEEEEe
Confidence 689999999999999999999887 556777777665320 000000 00001111 123589999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
|++..... +..++.|+.+++
T Consensus 254 DlG~e~~t------------~~~~~~Lf~iin 273 (329)
T PRK06835 254 DLGTEKIT------------EFSKSELFNLIN 273 (329)
T ss_pred ccCCCCCC------------HHHHHHHHHHHH
Confidence 99886433 126778888887
No 255
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=7.2e-05 Score=80.25 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=54.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-----------C--EEEEecccccccCcccccHHHHHHHHHhhcchhh-HhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-----------p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-e~a~~ 396 (686)
...||+|+.|+||+.+|+.+++.+.+ | +..++... +-++ -..++.+....+... +.+..
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~~i~---vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----KDLS---KSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----CcCC---HHHHHHHHHHhccCCcccCCc
Confidence 57789999999999999999988721 1 22222100 1111 133444444433221 22466
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
-|++||++|++... .+++||+.||
T Consensus 92 KvvII~~~e~m~~~--------------a~NaLLK~LE 115 (299)
T PRK07132 92 KILIIKNIEKTSNS--------------LLNALLKTIE 115 (299)
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhh
Confidence 79999999999877 8999999999
No 256
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.02 E-value=2.1e-05 Score=88.89 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=87.8
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHH
Q 005637 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 271 l~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (686)
|.+.|...|.|.+.+|+.|.-.+.....+....-.+ -...-|+||+|.|-|.|+.|.|.+
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGsh--------------------lRGDINiLlvGDPSvAKSQLLRyV 354 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSH--------------------LRGDINILLVGDPSVAKSQLLRYV 354 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCce--------------------eccceeEEEecCchHHHHHHHHHH
Confidence 555667789999999999987775222211110000 011269999999999999999998
Q ss_pred HHhcCCCEEEEec----ccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 351 ARYVNVPFVIADA----TTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 351 A~~l~~pfv~v~~----s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
-+......-..-. -.++. -.-.| +..+ - + +....|..||++|||+||+..-
T Consensus 355 LntAplAI~TTGRGSSGVGLTAAVTtD~eTG---ERRL---E--A-GAMVLADRGVVCIDEFDKMsDi------------ 413 (818)
T KOG0479|consen 355 LNTAPLAIATTGRGSSGVGLTAAVTTDQETG---ERRL---E--A-GAMVLADRGVVCIDEFDKMSDI------------ 413 (818)
T ss_pred HhcccccccccCCCCCCccceeEEeeccccc---hhhh---h--c-CceEEccCceEEehhcccccch------------
Confidence 6665222111110 01110 00111 1111 1 1 2223467899999999999754
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
=--++.++||...|+|...|.-..- +. .+-+++++|+
T Consensus 414 --DRvAIHEVMEQqtVTIaKAGIHasL-------NA-RCSVlAAANP 450 (818)
T KOG0479|consen 414 --DRVAIHEVMEQQTVTIAKAGIHASL-------NA-RCSVLAAANP 450 (818)
T ss_pred --hHHHHHHHHhcceEEeEeccchhhh-------cc-ceeeeeecCc
Confidence 3457899999777877766643322 22 3566777764
No 257
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=4e-05 Score=81.77 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=51.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE--E------Eec--------ccc---cccC-cccccHHHHHHHHHhhcchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV--I------ADA--------TTL---TQAG-YVGEDVESILYKLLTVSDYN 390 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv--~------v~~--------s~l---~~sg-yvG~~~~~~l~~l~~~a~~~ 390 (686)
..+||+|| +||+++|+.+|+.+...-. . -+| .++ .+.| .++. ..++++.......
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~i---dqIR~l~~~~~~~ 99 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKT---DTIRELVKNFSQS 99 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCH---HHHHHHHHHHhhC
Confidence 67899996 6899999999987732100 0 000 011 0011 1111 2344443322211
Q ss_pred hHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 391 ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
...+..-|++||++|++... ..|+||+.||
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLE 129 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIE 129 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhc
Confidence 12345679999999999987 9999999999
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.94 E-value=1e-05 Score=80.28 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=52.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
.+++|+||||||||+||.++++.+ +.+...++..++.. ..+........+..+ ...-+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEeccccc
Confidence 689999999999999999998776 66777788777642 111111222333322 22358999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
...... +...+.|..+++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 875433 226677888887
No 259
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=3.9e-05 Score=80.94 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc----CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~l 366 (686)
.+++|+||||||||+||.+||+.+ +...+.++..++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 689999999999999999999876 345555555444
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.85 E-value=0.00019 Score=82.51 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=43.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc-CC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-~~ 356 (686)
.++|++++|+.+.+.+.....+ ... ....++|+||||+|||+||++||+.+ ..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g----l~~----------------------~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG----LEE----------------------KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh----cCC----------------------CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3799999999999888522221 111 12688999999999999999999887 33
Q ss_pred CEEEEec
Q 005637 357 PFVIADA 363 (686)
Q Consensus 357 pfv~v~~ 363 (686)
|++.+..
T Consensus 131 ~~Y~~kg 137 (644)
T PRK15455 131 PIYVLKA 137 (644)
T ss_pred cceeecC
Confidence 5555544
No 261
>PF05729 NACHT: NACHT domain
Probab=97.84 E-value=0.00014 Score=68.77 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++++|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999998666
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.84 E-value=4.5e-05 Score=69.21 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=47.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
|.|+||||+|||++|+.|++.+...+-......+ |........+.. + ..+.++++||+......-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~~~~~w~g------Y----~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNPGDKFWDG------Y----QGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCCccchhhc------c----CCCcEEEEeecCcccccc-
Confidence 5799999999999999998777432211110110 100000111100 1 134699999999865430
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeec
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~v 440 (686)
.......|+++++...+.+
T Consensus 66 ---------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 66 ---------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred ---------chHHHHHHHHHHhcCCccc
Confidence 1126777888888554443
No 263
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.0001 Score=77.42 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=53.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc------cc--------c---c-cCcccccHHHHHHHHHhhcchhh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT------TL--------T---Q-AGYVGEDVESILYKLLTVSDYNV 391 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s------~l--------~---~-sgyvG~~~~~~l~~l~~~a~~~v 391 (686)
+..+||+||+|+||..+|.++|+.+-..--.-.|. .+ . + ..-++.+.-..+.+.+.... +
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s--~ 84 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS--V 84 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc--h
Confidence 47899999999999999999998772210000011 00 0 0 01122221222222222211 1
Q ss_pred HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 392 e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+.+..-|++||++|++... ..++||+.||
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE 113 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE 113 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc
Confidence 2234579999999999988 9999999999
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.78 E-value=3.8e-05 Score=82.64 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=44.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEI 404 (686)
.+++|+||+|||||+||.++|+.+ +.+...+.+.++.. ..+...+....+.. ....-+|+|||+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~----------l~~~dlLiIDDi 226 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA----------VKEAPVLMLDDI 226 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH----------hcCCCEEEEecC
Confidence 689999999999999999999888 56666667665531 00100011111111 123469999999
Q ss_pred cccch
Q 005637 405 DKITK 409 (686)
Q Consensus 405 Dkl~~ 409 (686)
..-..
T Consensus 227 G~e~~ 231 (306)
T PRK08939 227 GAEQM 231 (306)
T ss_pred CCccc
Confidence 87543
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=97.77 E-value=3e-05 Score=81.38 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=51.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
..+++|+||||||||+||.+++..+ +.....+++.++.. .+........+...+... .....+++|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 4689999999999999999997664 55555566555431 010000000111111110 12446999999987
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
..... ..++.|+.+++
T Consensus 176 ~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 176 LPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred CCCCh------------HHHHHHHHHHH
Confidence 64431 15667888887
No 266
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.71 E-value=0.00081 Score=71.71 Aligned_cols=138 Identities=18% Similarity=0.255 Sum_probs=80.4
Q ss_pred cCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHH
Q 005637 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEK 474 (686)
Q Consensus 395 ~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek 474 (686)
.+=||+|||+|++.++ -...+|+.+. ...+..|++||++....-+.+
T Consensus 172 ~~iViiIDdLDR~~~~--------------~i~~~l~~ik-------------------~~~~~~~i~~Il~~D~~~l~~ 218 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE--------------EIVELLEAIK-------------------LLLDFPNIIFILAFDPEILEK 218 (325)
T ss_pred ceEEEEEcchhcCCcH--------------HHHHHHHHHH-------------------HhcCCCCeEEEEEecHHHHHH
Confidence 4568899999999876 5556666664 134567899999877655666
Q ss_pred HHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhccc-CeEEEccCcChHHHHHHHhhhH
Q 005637 475 TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPK 553 (686)
Q Consensus 475 ~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~-~~iI~f~pLs~eeL~~IL~~~l 553 (686)
.+....... + ... ...+++.++ +..+.+++++..++.+.+...+
T Consensus 219 ai~~~~~~~---~--------------~~~------------------~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 219 AIEKNYGEG---F--------------DEI------------------DGREYLEKIIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHhhcCcc---c--------------ccc------------------cHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHH
Confidence 655432100 0 000 113355554 6679999999999999888765
Q ss_pred HHHHHHHHHHHhhcCCcccc----------CHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 554 NALGKQYRKMFQMNGVKLHF----------TENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 554 ~~L~kq~~~~~~~~gv~l~~----------s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+.+....... ...-.+ ....+..+....-....+-|.+++++..+..
T Consensus 264 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~ 320 (325)
T PF07693_consen 264 ESLESETNES----DDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSL 320 (325)
T ss_pred HHhhhccccc----cchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 5544332221 100001 1233334443311234567999999987643
No 267
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.55 E-value=8.8e-05 Score=93.85 Aligned_cols=107 Identities=27% Similarity=0.325 Sum_probs=72.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-cCcccccHHHHHHH-HHhhcchhhHh-hcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYK-LLTVSDYNVAA-AQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-sgyvG~~~~~~l~~-l~~~a~~~ve~-a~~gILfIDEIDkl 407 (686)
.++||.||+++|||.+++-+|+..+..+++++-.+.++ ..|+|........+ .|+.. -.+.+ -.+..+++||+...
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg-~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREG-VLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehh-HHHHHHHhCCEEEecccccc
Confidence 58999999999999999999999999999988776653 22333100000000 00100 11122 24578999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhC-ceeecCCCCCccCCCCC
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGD 452 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg-~~v~vp~~G~~~~~~g~ 452 (686)
+.. ++.+|.++++. +.+.+|+..++...+.+
T Consensus 520 ~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~ 551 (1856)
T KOG1808|consen 520 PHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPE 551 (1856)
T ss_pred chH--------------HHHHHHhhhhhhccccccccceeeccCcc
Confidence 776 99999999984 77777776665554443
No 268
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.47 E-value=0.0014 Score=71.44 Aligned_cols=52 Identities=31% Similarity=0.337 Sum_probs=39.1
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+.++|.++++..+...+. ...++. +..+..++|.||+|+|||++++.|-+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk----~AA~g~----------------------~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFK----SAAQGL----------------------EERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHH----HHHhcc----------------------CccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999988764 211111 1224789999999999999999997766
No 269
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.0001 Score=67.02 Aligned_cols=31 Identities=45% Similarity=0.761 Sum_probs=27.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
|++.||||+||||+|+.||+.++.+++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999877765554
No 270
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.44 E-value=0.0002 Score=69.31 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=24.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC---EEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~v~~s~l 366 (686)
.+++++|++|+|||++.+.+...+..+ ++.+++...
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 789999999999999999887666332 666666554
No 271
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=79.11 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=55.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gIL 399 (686)
+|.+|+|+||+|||.+++-+|+.. +..++.++...+.. +.+.|+- +..+..+...... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 689999999999999999998765 23477778766542 3455554 6677777664331 1344578
Q ss_pred EEccccccchh
Q 005637 400 YIDEVDKITKK 410 (686)
Q Consensus 400 fIDEIDkl~~~ 410 (686)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999999876
No 272
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00031 Score=80.06 Aligned_cols=97 Identities=33% Similarity=0.559 Sum_probs=75.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
++..++++||||||||++++++|.. +..+..++...+. ++|.|.. +..+...+..+.. ..++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhcc
Confidence 3489999999999999999999998 6666667777666 6788887 5667777766543 356999999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhC
Q 005637 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
+.+.. ........+...|+..|++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 98665 2333445689999999984
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.0024 Score=66.70 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=48.4
Q ss_pred hhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 525 PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.++..|++..+.++|++.++....++..+.. + ...+--++++++..+.... +++-++|..++.
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~---------a-~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~ 247 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRLEG---------A-GLPEPLFSDDALLLIHEAS-------QGIPRLINNLAT 247 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHHhc---------c-CCCcccCChhHHHHHHHHh-------ccchHHHHHHHH
Confidence 4678899977999999999988887652111 0 1224458999999999863 335566666666
Q ss_pred HHHhcCC
Q 005637 605 DAMYEIP 611 (686)
Q Consensus 605 ~al~e~~ 611 (686)
.||-...
T Consensus 248 ~Al~~a~ 254 (269)
T COG3267 248 LALDAAY 254 (269)
T ss_pred HHHHHHH
Confidence 6665443
No 274
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.32 E-value=0.00021 Score=68.71 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=29.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+..++|+|+||||||++|+.||+.++.+|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999998887443
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.00037 Score=65.29 Aligned_cols=33 Identities=48% Similarity=0.589 Sum_probs=25.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
.++++||||+|||++++.++..+ +.+.+.++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 36899999999999999998776 4455555543
No 276
>PHA00729 NTP-binding motif containing protein
Probab=97.27 E-value=0.00045 Score=71.30 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.+++|+|+||||||++|.+||+.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 277
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.0078 Score=68.61 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+.+||+||+|||||++.+.|+++++..++.-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 67889999999999999999999988776544
No 278
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.18 E-value=0.0018 Score=71.29 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
++.++.|||++|+|||.|+-++...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3589999999999999999999877743
No 279
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.18 E-value=0.0061 Score=66.89 Aligned_cols=64 Identities=27% Similarity=0.256 Sum_probs=50.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.|...|.+.+..++.+...+-+ .+ +.-|.++.|+|-+|||||.+.|.+-+.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~-----------------~~------------~~~PS~~~iyG~sgTGKT~~~r~~l~~ 53 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGN-----------------NS------------CTIPSIVHIYGHSGTGKTYLVRQLLRK 53 (438)
T ss_pred ccccCccchHHHHHHHHHHhCC-----------------CC------------cccceeEEEeccCCCchhHHHHHHHhh
Confidence 3556688889999998887731 01 112478899999999999999999999
Q ss_pred cCCCEEEEecccc
Q 005637 354 VNVPFVIADATTL 366 (686)
Q Consensus 354 l~~pfv~v~~s~l 366 (686)
++.+.+.++|-+.
T Consensus 54 ~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 54 LNLENVWLNCVEC 66 (438)
T ss_pred cCCcceeeehHHh
Confidence 9999999988755
No 280
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.13 E-value=0.00066 Score=66.95 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998777
No 281
>PRK13947 shikimate kinase; Provisional
Probab=97.13 E-value=0.00039 Score=67.30 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=29.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
+|+|+|+||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999975553
No 282
>PRK08118 topology modulation protein; Reviewed
Probab=97.11 E-value=0.0004 Score=68.14 Aligned_cols=32 Identities=44% Similarity=0.717 Sum_probs=29.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
.|+++||||+||||+|+.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887765
No 283
>PRK07261 topology modulation protein; Provisional
Probab=97.08 E-value=0.00085 Score=66.00 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=33.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCccccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGED 375 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~ 375 (686)
.++++|+||+||||+|+.|++.++.+++..|.-... +++...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 488999999999999999999999998877764443 3444433
No 284
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.08 E-value=0.0012 Score=69.10 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=46.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------EEEEecc---cccc----------cCcccccHHH---HHHHHHhhcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---ILYKLLTVSD 388 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------fv~v~~s---~l~~----------sgyvG~~~~~---~l~~l~~~a~ 388 (686)
..++|+||+|+|||+|++.+++.+... |+.+... +..+ ..-.+..... ........+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999877542 2221111 0000 0001112122 2223333343
Q ss_pred hhhHhhcCcEEEEccccccchh
Q 005637 389 YNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 389 ~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.......+.+||+||+.++...
T Consensus 97 ~~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 97 RLVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHCCCCEEEEEECHHHhhhh
Confidence 3333456779999999998764
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.05 E-value=0.0018 Score=65.10 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc------cCcccccHHHHHHHHHhhcchh-h----HhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ------AGYVGEDVESILYKLLTVSDYN-V----AAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~------sgyvG~~~~~~l~~l~~~a~~~-v----e~a~~ 396 (686)
...++.||||||||++++.+.+.+ +..++.+..+.-.. .+.-... +..++...... . .....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~T----i~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQT----IHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEE----HHHHTTEECCEECCSSCC-TST
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhh----HHHHHhcCCcccccccccCCcc
Confidence 467889999999999999987666 44555444432210 0100011 11222111110 0 02345
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
.+|+|||+..+... ....|+....
T Consensus 95 ~vliVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 95 DVLIVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp SEEEESSGGG-BHH--------------HHHHHHHHS-
T ss_pred cEEEEecccccCHH--------------HHHHHHHHHH
Confidence 79999999999876 6777777765
No 286
>PRK03839 putative kinase; Provisional
Probab=97.04 E-value=0.00051 Score=67.42 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.++|+|+||+||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999886544
No 287
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.04 E-value=0.00055 Score=64.76 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887554
No 288
>PRK00625 shikimate kinase; Provisional
Probab=97.01 E-value=0.0006 Score=67.56 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+|+|+|.||+|||++++.+|+.++.+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999999997655
No 289
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.97 E-value=0.0016 Score=72.79 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=60.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh--c--CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY--V--NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~--l--~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
.|+++.||+|||||++|.+++.. + | -| +++ ..++..+-....+. -+..-+|+|||+..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f--~T~-------------a~Lf~~L~~~~lg~--v~~~DlLI~DEvgy 271 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG-GT--ITV-------------AKLFYNISTRQIGL--VGRWDVVAFDEVAT 271 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC-Cc--CcH-------------HHHHHHHHHHHHhh--hccCCEEEEEcCCC
Confidence 79999999999999999998766 2 2 11 122 22232222211111 13346899999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcc
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~ 470 (686)
+...+. ...++.|...|+.... ..+. ..-..+.-+++-||..
T Consensus 272 lp~~~~----------~~~v~imK~yMesg~f--------sRG~----~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 272 LKFAKP----------KELIGILKNYMESGSF--------TRGD----ETKSSDASFVFLGNVP 313 (449)
T ss_pred CcCCch----------HHHHHHHHHHHHhCce--------eccc----eeeeeeeEEEEEcccC
Confidence 766422 2378888899983332 2221 1234567777778754
No 290
>PRK10536 hypothetical protein; Provisional
Probab=96.97 E-value=0.0049 Score=64.88 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+++.||+|||||+||.++|..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999874
No 291
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.0012 Score=73.22 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=48.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-----C-EEEEecccc---------------cccCcccccHHHHHH---HHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-----P-FVIADATTL---------------TQAGYVGEDVESILY---KLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-----p-fv~v~~s~l---------------~~sgyvG~~~~~~l~---~l~~~ 386 (686)
...+++||||||||+||+.|++.... . |+.+ ..+. ..+. ..+.++..++ ..+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvL-IgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLL-IDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEE-eCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999876633 1 2211 1111 1011 1112222222 33444
Q ss_pred cchhhHhhcCcEEEEccccccchh
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
+....+.....+||||||+++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHH
Confidence 555555667889999999999875
No 292
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.93 E-value=0.00049 Score=64.26 Aligned_cols=30 Identities=47% Similarity=0.729 Sum_probs=24.8
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
++++||||+|||++|+.+++.++ ...++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHH
Confidence 78999999999999999999987 3334443
No 293
>PRK14532 adenylate kinase; Provisional
Probab=96.92 E-value=0.00076 Score=66.59 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
+++|+||||+|||++|+.||+.++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 58999999999999999999999876653
No 294
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0033 Score=62.94 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v 361 (686)
.-.+++||+|+|||+++..++..+ +...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999998887655 4444444
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.87 E-value=0.0089 Score=67.51 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
++..++|+|++|+|||+++..+|..+ +.....+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35789999999999999999998777 455666666554
No 296
>PRK14530 adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=67.32 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|+||||+|||++|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4799999999999999999999998776633
No 297
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0011 Score=65.60 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
.|+|.|+||+|||++|+.|++.++.+++..|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 58999999999999999999999988775553
No 298
>PRK13949 shikimate kinase; Provisional
Probab=96.82 E-value=0.001 Score=65.44 Aligned_cols=32 Identities=44% Similarity=0.682 Sum_probs=29.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..++|+|+||+|||++++.+|+.++.+|+..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999987655
No 299
>PRK13948 shikimate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=65.81 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
++.+++|+|.+|+|||++++.+|+.++.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4589999999999999999999999999998555
No 300
>PHA02624 large T antigen; Provisional
Probab=96.82 E-value=0.0087 Score=69.51 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=53.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
..+||+||||||||+++.+|++.++...+.++++.-.- ...... ....-+.+||++-.-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks---------~FwL~p---------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL---------NFELGC---------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh---------HHHhhh---------hhhceEEEeeeccccccc
Confidence 68899999999999999999999976677677543210 111010 123358899998654332
Q ss_pred ccccccCCCCchHHH--HHHHHHHHhCc-eeec
Q 005637 411 AESLNISRDVSGEGV--QQALLKMLEGT-VVNV 440 (686)
Q Consensus 411 r~~~~~~~d~~~e~v--q~~LL~lLEg~-~v~v 440 (686)
..... .|..+ .+-|...|||- .|.+
T Consensus 494 ~~~Lp-----~G~~~dNl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 494 NKDLP-----SGQGMNNLDNLRDYLDGSVPVNL 521 (647)
T ss_pred cccCC-----cccccchhhHHHhhcCCCCcccc
Confidence 11100 01112 36788889976 5544
No 301
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.80 E-value=0.0092 Score=62.31 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+.++|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 78899999999999999999877
No 302
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.78 E-value=0.0016 Score=66.98 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA 351 (686)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4679999999999999999997
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.76 E-value=0.0012 Score=64.68 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
++++||||+|||++|+.||+.++.+. ++++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~ 33 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDL 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChH
Confidence 78999999999999999999997544 555444
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.0066 Score=66.35 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=26.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
+..++|+||||+|||+++..+|..+ +.....+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4789999999999999998888766 3444445544
No 305
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.74 E-value=0.012 Score=61.86 Aligned_cols=34 Identities=41% Similarity=0.765 Sum_probs=25.8
Q ss_pred CCCccccccCce-EEEEccCCChHHHHHHHHHHhc
Q 005637 321 VDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 321 ~~~~~v~~~~~~-vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++.++.++.+- ++|.||+||||||+.|.|-+..
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 344455555544 5599999999999999998776
No 306
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.74 E-value=0.0013 Score=61.53 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=27.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+++.|+||+|||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987665
No 307
>PRK14531 adenylate kinase; Provisional
Probab=96.73 E-value=0.0014 Score=64.85 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++++||||+|||++++.||+.++.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 469999999999999999999999877653
No 308
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.70 E-value=0.0014 Score=62.11 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=24.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
++|+|+||+|||++|+.+++.++.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999877665
No 309
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.69 E-value=0.0034 Score=69.83 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=46.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------EEEEecc---cccc----------cCcccccHHH---HHHHHHhhcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---ILYKLLTVSD 388 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------fv~v~~s---~l~~----------sgyvG~~~~~---~l~~l~~~a~ 388 (686)
..++++||||+|||+|++.+++.+... ++.+... +..+ ..-.+..... ........+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 678999999999999999999876432 2111100 0000 0011111111 1123333344
Q ss_pred hhhHhhcCcEEEEccccccchh
Q 005637 389 YNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 389 ~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.........||||||++++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHHH
Confidence 4445566789999999999774
No 310
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0013 Score=65.13 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=29.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.++.|+|++|+|||++.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 58999999999999999999999999997444
No 311
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.68 E-value=0.0014 Score=64.48 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=25.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
|+++||||+|||++|+.||+.++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999998776654
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.0037 Score=64.57 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=46.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCEEEEecc-cccccCcccccHHHHHHH--HHhh---c---chhhHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADAT-TLTQAGYVGEDVESILYK--LLTV---S---DYNVAA 393 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--------~~pfv~v~~s-~l~~sgyvG~~~~~~l~~--l~~~---a---~~~ve~ 393 (686)
.+.|+.||||||||++.|-||+.+ ......+|-. ++. .+..|...-..-+. .+.. + -..++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 789999999999999999999876 2345666654 443 34444321111110 0000 0 012445
Q ss_pred hcCcEEEEcccccc
Q 005637 394 AQQGIVYIDEVDKI 407 (686)
Q Consensus 394 a~~gILfIDEIDkl 407 (686)
..|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 67889999999884
No 313
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.67 E-value=0.0018 Score=63.77 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=30.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
.+|+|+|++|+|||++++.+|+.++.+|+..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 689999999999999999999999999876664
No 314
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.67 E-value=0.0077 Score=60.86 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|+||+|+|||+.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 678999999999999998887655
No 315
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.015 Score=65.02 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=43.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
.++++||-+||||++++.+.+.+...++.++.-++.... ....+.+......... ....||||||+...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~-----~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKER-----EKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhcc-----CCceEEEecccCch
Confidence 789999999999999999988886555555554443111 1111222222221110 34689999999964
No 316
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.64 E-value=0.0015 Score=64.16 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=28.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
..++|.|+||+|||++|+.+++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5789999999999999999999988777655443
No 317
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0015 Score=63.21 Aligned_cols=35 Identities=34% Similarity=0.645 Sum_probs=30.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
.++|++|-||||||++|..||..++.+++ +++++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i--~isd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYI--EISDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceE--ehhhHH
Confidence 69999999999999999999999988886 444443
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.63 E-value=0.0014 Score=63.05 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=24.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
++|+||||+|||++|+.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999986664
No 319
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.61 E-value=0.0042 Score=60.67 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998875543 455555544
No 320
>PRK13946 shikimate kinase; Provisional
Probab=96.60 E-value=0.0018 Score=64.15 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=30.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
+..|+|+|.+|+|||++++.||+.++.+|+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3689999999999999999999999999986653
No 321
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.59 E-value=0.0021 Score=62.44 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=29.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
.+++|+|++|+|||++|+.+|+.++.+|+..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468899999999999999999999999975543
No 322
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.59 E-value=0.082 Score=54.86 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=27.2
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
|+|+|+||+|||++|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999887 455666655444
No 323
>PHA02774 E1; Provisional
Probab=96.56 E-value=0.0056 Score=70.76 Aligned_cols=76 Identities=18% Similarity=0.386 Sum_probs=49.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE-EecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~-v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
..++|+||||||||++|-+|++.++...+. ++..+- -| +..+ ...-|++|||+-.-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~---Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH---FW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc---cc--------cchh----------ccCCEEEEecCcchHH
Confidence 689999999999999999999998655433 443210 01 1111 1224899999932211
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeec
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~v 440 (686)
. =+...|..+|+|..+.|
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred H-------------HHHHHHHHHcCCCccee
Confidence 1 15557888999887765
No 324
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.011 Score=65.80 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..++|+||+|+|||+++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.55 E-value=0.0047 Score=60.37 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=32.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~ 367 (686)
..|+|+|.||+|||++|+++.+.+ +.+.+.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 678999999999999999998887 7788999988775
No 326
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.50 E-value=0.0023 Score=66.18 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|+||||+|||++|+.||+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998777643
No 327
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.49 E-value=0.011 Score=60.56 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
+..++|+||+|+|||++.|.++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 35788999999999999999964
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.49 E-value=0.029 Score=63.17 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=29.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
+..++|+|++|+||||++..||..+ +.....+++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4789999999999999999998776 556666666544
No 329
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.46 E-value=0.0075 Score=57.95 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.6
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
++|+|+||+|||++|+.+++.+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 555666665444
No 330
>PRK06762 hypothetical protein; Provisional
Probab=96.45 E-value=0.0028 Score=61.20 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.-++|+|+||+|||++|+.+++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 578899999999999999999998655555554333
No 331
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.01 Score=58.40 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.+.|+||+|||+++..+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 679999999999999999999777
No 332
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.027 Score=58.82 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=24.3
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++.+.+ .-+.+.||+|||||||.+.+|...
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444 456699999999999999999776
No 333
>PRK14528 adenylate kinase; Provisional
Probab=96.39 E-value=0.003 Score=62.89 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+++.||||+|||++|+.+|+.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877654
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.38 E-value=0.0085 Score=60.30 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+-+++.||+|+|||+++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999987774
No 335
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.38 E-value=0.028 Score=56.61 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC-CCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN-VPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~-~pfv~v~~s~ 365 (686)
+..|.+.|++|+|||||+++|++.++ ..+..++...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 36888999999999999999999883 2344444433
No 336
>PRK06547 hypothetical protein; Provisional
Probab=96.36 E-value=0.0033 Score=62.19 Aligned_cols=32 Identities=41% Similarity=0.516 Sum_probs=27.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..|++.|++|+|||++|+.|++.++.+++..|
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 67888899999999999999999888776544
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.34 E-value=0.0034 Score=61.35 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..+++.||||+|||++|+.+++.++.+. +++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~ 36 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGD 36 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHH
Confidence 4788999999999999999999987654 44433
No 338
>PRK02496 adk adenylate kinase; Provisional
Probab=96.33 E-value=0.0031 Score=62.11 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=25.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.+++.||||+|||++|+.||+.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999999876653
No 339
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.29 E-value=0.0067 Score=65.35 Aligned_cols=33 Identities=39% Similarity=0.671 Sum_probs=29.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
+..|+|+|+||+|||++++.+|+.++.+|+..|
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 378999999999999999999999999998544
No 340
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.25 E-value=0.0037 Score=63.17 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
|+++||||+|||++|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876654
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0041 Score=61.97 Aligned_cols=33 Identities=39% Similarity=0.691 Sum_probs=26.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.+++.||||+||||+|+.||+.++. ..+|..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHH
Confidence 5899999999999999999999644 44554444
No 342
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0037 Score=61.33 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=25.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+.+.|||||||||+|+.||+.++.+++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee
Confidence 668899999999999999999999987
No 343
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.22 E-value=0.0065 Score=58.66 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=23.0
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
|.|+|+||||||+|++.|++. +.+++.--+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~ 34 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREI 34 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHH
Confidence 789999999999999999998 777663333344
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.043 Score=61.29 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=27.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
+..++|+||+|+|||+++..||..+ +.....+++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3789999999999999999998766 33444455533
No 345
>PLN02200 adenylate kinase family protein
Probab=96.22 E-value=0.0045 Score=64.20 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
+..+++.|+||+|||++|+.||+.++.+ .++++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 3678899999999999999999999765 45665553
No 346
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.20 E-value=0.0035 Score=56.90 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.7
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (686)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 347
>PF14516 AAA_35: AAA-like domain
Probab=96.20 E-value=0.049 Score=59.30 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=30.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
+..+.+.||..+|||++...+.+.+ +...+.+|+..+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 3688899999999999998886555 667788888765
No 348
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.19 E-value=0.017 Score=61.06 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=58.4
Q ss_pred CCCCccccccCc-eEEEEccCCChHHHHHHHHHHhcCCC--EEEEecccccccCcccccHHHHHHHHHhhcc--------
Q 005637 320 GVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSD-------- 388 (686)
Q Consensus 320 ~~~~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~~p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~-------- 388 (686)
+.++.++.+..+ .+-|+|++||||||++|.+.+..... -+..+..++.... .......+.+++..-.
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhc
Confidence 456666776664 45599999999999999999887532 2334443332111 1111233333333210
Q ss_pred --hh----------h---HhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 389 --YN----------V---AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 389 --~~----------v---e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
.. + -+-+|.+|+.||.-.+... + +|.++|.+|.
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv----------S---iqaqIlnLL~ 153 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV----------S---VQAQILNLLK 153 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch----------h---HHHHHHHHHH
Confidence 00 1 1346889999998876543 2 6666666664
No 349
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.014 Score=58.26 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=46.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc--cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ--AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~--sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfID 402 (686)
..+.|+|.+|+|||++|.++.+.+ |...+.+|...+.. ..-.|.+.++....+.+.+...-..+..|+|.|=
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 688899999999999999999887 77888888877642 1123444444444333332221122445666664
No 350
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.14 E-value=0.0045 Score=62.78 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.|+++||||+|||++|+.||+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999876654
No 351
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.022 Score=63.15 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...++|+||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998653
No 352
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.11 E-value=0.029 Score=70.58 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..+-++|++|+||||||+++++.+...
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 678899999999999999998776443
No 353
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.055 Score=57.62 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----C-CCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV----N-VPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~-~pfv~v~~s~ 365 (686)
+..++|+||+|+|||+++..||..+ + .....+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4689999999999999999998665 3 4555555544
No 354
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.09 E-value=0.026 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++|.||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999963
No 355
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.09 E-value=0.02 Score=60.71 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=54.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
.+|.||+|.+|+||++++|..|-..+..++.+..+ .+|--.+...-+..++..+.. ..++.+++|+|-+-...
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi~~~ 103 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT----KGYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQIVDE 103 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS----TTTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCSSSC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEee----CCcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcccchH
Confidence 48999999999999999999998888888776653 233222323344444444432 24567888887655433
Q ss_pred hccccccCCCCchHHHHHHHHHHHh
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
. ....+..+|.
T Consensus 104 ~--------------fLe~in~LL~ 114 (268)
T PF12780_consen 104 S--------------FLEDINSLLS 114 (268)
T ss_dssp H--------------HHHHHHHHHH
T ss_pred h--------------HHHHHHHHHh
Confidence 2 6666777776
No 356
>PRK14527 adenylate kinase; Provisional
Probab=96.03 E-value=0.0049 Score=61.33 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..++++||||+|||++|+.||+.++.+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 67999999999999999999999876554
No 357
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.02 E-value=0.013 Score=71.08 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=33.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
.+|++||||+|||+.|.+.|+.++..++..|+++..
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 468999999999999999999999999999998775
No 358
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.00 E-value=0.021 Score=57.37 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=22.2
Q ss_pred cccccCc--eEEEEccCCChHHHHHHHHH
Q 005637 325 TVELEKS--NILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 325 ~v~~~~~--~vLL~GPPGTGKT~LAraLA 351 (686)
++.+.+. .++|+||.|+|||++.|.++
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444443 59999999999999999998
No 359
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.045 Score=64.46 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=32.2
Q ss_pred CCCccccccC-ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEecccc
Q 005637 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (686)
Q Consensus 321 ~~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l 366 (686)
.++-++.++| ..+.|+||+|.|||++|..|-+.+.. --+.+|..++
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPI 532 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeeh
Confidence 3444555555 67789999999999999999887732 2344555544
No 360
>PHA01747 putative ATP-dependent protease
Probab=95.99 E-value=0.025 Score=62.11 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=47.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
.-|++=.||.|||||++-+-+....+ +.. +....+. ..++-..-....+.+ +.--+|++|||..+..
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp--~~i-SGG~~Tv--------A~LFyN~~t~~~GLV--g~~D~VaFDEVa~i~f 256 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFN--FRY-YTEPPTY--------ANLVYDAKTNALGLV--FLSNGLIFDEIQTWKD 256 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCC--cee-eCCCCch--------HHheEecCCCceeEE--eeccEEEEEccccccC
Confidence 47888889999999999998876442 221 2222111 111111111111111 1113789999999875
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCce
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
+. ...+.+.|...|+...
T Consensus 257 ~~----------~kdiv~IMKdYMesG~ 274 (425)
T PHA01747 257 SN----------MRAINSTLSTGMENCV 274 (425)
T ss_pred CC----------HHHHHHHHHHHhhcce
Confidence 41 1238888999998433
No 361
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.97 E-value=0.025 Score=67.80 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=50.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---C--CCEEEEecccccc---cCcccccHHHHHHHHHhhcchh-----hH-hhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---N--VPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYN-----VA-AAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~--~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~-----ve-~a~~ 396 (686)
..+++.|+||||||++++++.+.+ + .+++.+..+.-.. ....|.. ...+..++...... .+ ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhccccC
Confidence 578999999999999999996655 3 2333222221110 0111211 12233333321110 00 1245
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
.+|++||+..+... ....|++.+.
T Consensus 418 ~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 79999999999776 7778887765
No 362
>PRK08233 hypothetical protein; Provisional
Probab=95.96 E-value=0.0089 Score=58.07 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC-CCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~-~pfv~v~~s 364 (686)
..|.+.|+||+||||+|+.|++.++ .+.+..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 5678899999999999999999985 444444443
No 363
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.95 E-value=0.028 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999973
No 364
>PRK04040 adenylate kinase; Provisional
Probab=95.95 E-value=0.0071 Score=60.61 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..++++|+||||||++++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999983
No 365
>PLN02674 adenylate kinase
Probab=95.94 E-value=0.0071 Score=63.27 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..++|.||||+||+++|+.||+.++.+. +++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdl 65 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDM 65 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHH
Confidence 5799999999999999999999997655 455444
No 366
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.93 E-value=0.027 Score=55.91 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=18.0
Q ss_pred EEEEccCCChHHHHHHHHH
Q 005637 333 ILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA 351 (686)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 367
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.93 E-value=0.007 Score=64.13 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=25.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~ 360 (686)
..++|.|+||+|||++|+.|++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 468899999999999999999998 544443
No 368
>PRK04182 cytidylate kinase; Provisional
Probab=95.93 E-value=0.0075 Score=58.40 Aligned_cols=29 Identities=41% Similarity=0.582 Sum_probs=26.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.|+|.|++|+|||++|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988763
No 369
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.90 E-value=0.011 Score=49.40 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (686)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 370
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.90 E-value=0.012 Score=58.90 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=27.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
..++++||||+|||++|..++... +.+.+.++..+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 678899999999999999887543 55677777754
No 371
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.89 E-value=0.0074 Score=59.83 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..++|+||+|+|||++++.|+..++.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47889999999999999999998876554
No 372
>PF13245 AAA_19: Part of AAA domain
Probab=95.88 E-value=0.011 Score=50.74 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.2
Q ss_pred ceEEEEccCCChHH-HHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT-~LAraLA~~l 354 (686)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667999999999 6666666665
No 373
>PTZ00301 uridine kinase; Provisional
Probab=95.85 E-value=0.036 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.-|.+.|+||+||||+|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 457799999999999999998766
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.85 E-value=0.019 Score=58.93 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
+..++++|+||+|||+++..++... +.+.+.++.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 3788899999999999999995432 445544544
No 375
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.85 E-value=0.029 Score=55.77 Aligned_cols=25 Identities=48% Similarity=0.724 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+++.||+|+|||+++++++..+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999998763
No 376
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.03 Score=56.07 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=29.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
..+.|+|++|+|||++|+.|++.+ +...+.++...+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 688899999999999999999877 344666666444
No 377
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.84 E-value=0.019 Score=58.32 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
..++++||||+|||++|..+|... +.+.+.++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 678899999999999999997543 5666667765
No 378
>PRK14526 adenylate kinase; Provisional
Probab=95.82 E-value=0.0082 Score=61.36 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.++|+||||+|||++|+.||+.++.+++ ++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 4789999999999999999999876554 44444
No 379
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.82 E-value=0.019 Score=58.20 Aligned_cols=97 Identities=23% Similarity=0.303 Sum_probs=58.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
..++|.|+-|+|||+..+.|+... +.-+..... + .+....+. ..-|+.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-------~-kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-------D-KDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-------C-cHHHHHHH----------HhHheeHHHHhhcchh
Confidence 578899999999999999996552 211111110 0 12222221 2248999999998855
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
-++.|-.++...... .+.+.++...--.+..+||+|+|.
T Consensus 111 --------------~~~~lK~~iT~~~~~------~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDT------YRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred --------------hHHHHHHHhccccee------eecCCcCcceeeceeEEEEeccCC
Confidence 456666666533322 223333333444567889999884
No 380
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.81 E-value=0.029 Score=59.55 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=23.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.+++++||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998874
No 381
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.80 E-value=0.017 Score=62.89 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
..++|+|+||+|||+|++.|++.++.+++.--+.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5789999999999999999999999988655554443
No 382
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.79 E-value=0.022 Score=62.28 Aligned_cols=25 Identities=44% Similarity=0.761 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+++.||+|+|||++++++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999987664
No 383
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.79 E-value=0.0073 Score=57.65 Aligned_cols=30 Identities=40% Similarity=0.581 Sum_probs=24.6
Q ss_pred EEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 335 L~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+.||||+|||++|+.||+.++. +.+++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHH
Confidence 5899999999999999999865 44566544
No 384
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.78 E-value=0.034 Score=63.04 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=27.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
..+++.|+||+|||+++..++... +.+.+.++..+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 688999999999999999997654 45666666543
No 385
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.77 E-value=0.017 Score=63.67 Aligned_cols=26 Identities=35% Similarity=0.764 Sum_probs=23.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+.||.|||||++.++|...+.
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 37889999999999999999987773
No 386
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.71 E-value=0.068 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999999976
No 387
>PRK01184 hypothetical protein; Provisional
Probab=95.69 E-value=0.0095 Score=58.60 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=24.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.++|+|+||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 68899999999999998 688888777543
No 388
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.67 E-value=0.01 Score=57.00 Aligned_cols=29 Identities=41% Similarity=0.622 Sum_probs=26.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.|.+.|++|+|||++|+.+|+.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 47899999999999999999999888753
No 389
>PLN02199 shikimate kinase
Probab=95.65 E-value=0.011 Score=63.43 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=29.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.+|+|+|.+|+|||++++.+|+.++.+|+..|
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 78999999999999999999999999997544
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.64 E-value=0.01 Score=60.86 Aligned_cols=35 Identities=40% Similarity=0.595 Sum_probs=28.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.++++||+|||||.+|-++|+..+.|.+..|.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 57899999999999999999999999999997654
No 391
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.63 E-value=0.047 Score=56.71 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=59.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CC--C------------EEEEeccccccc--CcccccHHHHHHHHHhhcch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NV--P------------FVIADATTLTQA--GYVGEDVESILYKLLTVSDY 389 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~--p------------fv~v~~s~l~~s--gyvG~~~~~~l~~l~~~a~~ 389 (686)
+.++++||...|||++.|.+|... |. | +..+...+-... ..+..+ -..+..++..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E-~~~~~~il~~~-- 120 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAE-MKRLSSILRNA-- 120 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHH-HHHHHHHHHH---
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHh-HHHHHhhhhhc--
Confidence 568999999999999999996443 22 2 222222111111 122222 23334444332
Q ss_pred hhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCc
Q 005637 390 NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (686)
Q Consensus 390 ~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~ 469 (686)
...++|+|||+.+-+.. ..+..+..++++.|. +..+..+|+++.+
T Consensus 121 ----~~~sLvliDE~g~gT~~---------~eg~ai~~aile~l~----------------------~~~~~~~i~~TH~ 165 (235)
T PF00488_consen 121 ----TEKSLVLIDELGRGTNP---------EEGIAIAIAILEYLL----------------------EKSGCFVIIATHF 165 (235)
T ss_dssp -----TTEEEEEESTTTTSSH---------HHHHHHHHHHHHHHH----------------------HTTT-EEEEEES-
T ss_pred ----ccceeeecccccCCCCh---------hHHHHHHHHHHHHHH----------------------HhccccEEEEecc
Confidence 35689999999985443 233445666666654 1123566778888
Q ss_pred ccHHHHHH
Q 005637 470 VDIEKTIS 477 (686)
Q Consensus 470 ~~Lek~i~ 477 (686)
.+|.+...
T Consensus 166 ~~l~~~~~ 173 (235)
T PF00488_consen 166 HELAELLE 173 (235)
T ss_dssp GGGGGHHH
T ss_pred chhHHHhh
Confidence 87765544
No 392
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.089 Score=54.18 Aligned_cols=104 Identities=21% Similarity=0.370 Sum_probs=58.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec-ccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA-TTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~-s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
.-|.+.|++|+|||++|+.|+..++.+.+.+=+ .++ |... ..... .....+=.|..+.+.-
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y----Yk~~--~~~~~------------~~~~~~n~d~p~A~D~ 70 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY----YKDQ--SHLPF------------EERNKINYDHPEAFDL 70 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc----ccch--hhcCH------------hhcCCcCccChhhhcH
Confidence 456689999999999999999999866322211 111 1111 11110 0112233444444332
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCC-CceEeeccceEEEc
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFIC 465 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g-~~i~VdtsniIfI~ 465 (686)
+ -....|..+++|..+.+|.-...++.+. ..+.+...++++|-
T Consensus 71 d-------------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvE 114 (218)
T COG0572 71 D-------------LLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVE 114 (218)
T ss_pred H-------------HHHHHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEe
Confidence 2 3667777888899988885443333332 34455556666653
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.62 E-value=0.03 Score=59.08 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=42.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC---CEEEEe-ccccccc--------CcccccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQA--------GYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~v~-~s~l~~s--------gyvG~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
..+++.||+|+|||++++++...+.. .++.+. ..++.-. ...+.+....+...++. .+-+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~--------~PD~ 152 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQ--------DPDI 152 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhcc--------CCCE
Confidence 67999999999999999998766632 244432 2232111 11233334455555443 4579
Q ss_pred EEEccccc
Q 005637 399 VYIDEVDK 406 (686)
Q Consensus 399 LfIDEIDk 406 (686)
|+++||..
T Consensus 153 i~vgEiR~ 160 (264)
T cd01129 153 IMVGEIRD 160 (264)
T ss_pred EEeccCCC
Confidence 99999976
No 394
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.60 E-value=0.037 Score=59.60 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
-.+++.|++|||||++|+.||+.++.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6799999999999999999999998774
No 395
>PLN02165 adenylate isopentenyltransferase
Probab=95.59 E-value=0.01 Score=64.60 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=28.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
..++|+||||+|||+||..||+.++..++..|.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 578999999999999999999999887665554
No 396
>PRK06696 uridine kinase; Validated
Probab=95.58 E-value=0.014 Score=59.72 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=30.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~ 367 (686)
..|.+.|+||+||||+|+.|++.+ +.+.+.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 678899999999999999999998 5667776666553
No 397
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.0089 Score=59.30 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.++++|.||||||++++.|+ .++.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8877665433
No 398
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.54 E-value=0.03 Score=53.39 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.4
Q ss_pred cccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.+.+ ..+.+.||+|+|||+|+++++...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344444 567799999999999999999876
No 399
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.54 E-value=0.022 Score=59.64 Aligned_cols=68 Identities=29% Similarity=0.395 Sum_probs=41.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC---CEEEEe-ccccccc---------CcccccHHHHHHHHHhhcchhhHhhcCc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQA---------GYVGEDVESILYKLLTVSDYNVAAAQQG 397 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~v~-~s~l~~s---------gyvG~~~~~~l~~l~~~a~~~ve~a~~g 397 (686)
.++++.||+|+|||++++++...+.. .++.+. ..++.-. .--+.+....+...++. .+-
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~--------~pD 199 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQ--------DPD 199 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS----------S
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcC--------CCC
Confidence 79999999999999999999888743 333333 2233110 00122334555555443 456
Q ss_pred EEEEccccc
Q 005637 398 IVYIDEVDK 406 (686)
Q Consensus 398 ILfIDEIDk 406 (686)
+|+++||-.
T Consensus 200 ~iiigEiR~ 208 (270)
T PF00437_consen 200 VIIIGEIRD 208 (270)
T ss_dssp EEEESCE-S
T ss_pred cccccccCC
Confidence 999999986
No 400
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.54 E-value=0.039 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.5
Q ss_pred ceEEEEccCCChHHH-HHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTL-LAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~-LAraLA~~l 354 (686)
.++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 478999999999999 555554444
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.46 E-value=0.017 Score=64.02 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
..+++.|+||+|||+++..+|..+ +.+.+.++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 678899999999999999987654 3456566553
No 402
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.44 E-value=0.06 Score=58.95 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+++.|.||||||.||-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 403
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.44 E-value=0.017 Score=63.95 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=45.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-----CEEE--Eeccc-----ccc-------cCcccccHHH---HHHHHHhhcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-----PFVI--ADATT-----LTQ-------AGYVGEDVES---ILYKLLTVSD 388 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-----pfv~--v~~s~-----l~~-------sgyvG~~~~~---~l~~l~~~a~ 388 (686)
...+++||||||||+|++.+++.+.. .++. ++-.. +.. .......... ........+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999887632 1121 11110 000 0010011111 1122334444
Q ss_pred hhhHhhcCcEEEEccccccchh
Q 005637 389 YNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 389 ~~ve~a~~gILfIDEIDkl~~~ 410 (686)
+..+....-+|++||+.++...
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A 235 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARA 235 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHH
Confidence 4555667789999999998764
No 404
>PRK14529 adenylate kinase; Provisional
Probab=95.44 E-value=0.011 Score=60.99 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=25.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+++|.||||+|||++|+.||+.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4889999999999999999999987664
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.44 E-value=0.057 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++|+||.|+|||++.++++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4789999999999999999983
No 406
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.42 E-value=0.17 Score=56.97 Aligned_cols=171 Identities=19% Similarity=0.318 Sum_probs=100.5
Q ss_pred HHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEee
Q 005637 378 SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID 457 (686)
Q Consensus 378 ~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vd 457 (686)
+.+..++..+.+ ++=+|+|||++.+.+- .++..++...+.|+++++... +| .
T Consensus 227 k~L~~~lr~aGy-----~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~ 278 (416)
T PF10923_consen 227 KGLARFLRDAGY-----KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------R 278 (416)
T ss_pred HHHHHHHHHcCC-----CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------C
Confidence 445555666554 4557899999998764 345557789999999998211 12 2
Q ss_pred ccceEEEccCCcccHHHHH-HhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEE
Q 005637 458 TKDILFICGGAFVDIEKTI-SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVS 536 (686)
Q Consensus 458 tsniIfI~tgn~~~Lek~i-~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~ 536 (686)
..++.|+++|+.. .+ ..++ .+ .+++...+.+-.... -.+++.+-...+|.
T Consensus 279 ~~gL~~~~~gTPe----f~eD~rr---Gv--------------~sY~AL~~RL~~~~~--------~~~~~~n~~~pvIr 329 (416)
T PF10923_consen 279 APGLYFVFAGTPE----FFEDGRR---GV--------------YSYEALAQRLAEEFF--------ADDGFDNLRAPVIR 329 (416)
T ss_pred CCceEEEEeeCHH----HhhCccc---cc--------------cccHHHHHHHhcccc--------ccccccCccCceec
Confidence 4568888888843 22 1111 01 122232222222111 13667777777999
Q ss_pred ccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh---HHHHHHHHH--HHHHHhcCC
Q 005637 537 LLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR---GLRSLLENI--LMDAMYEIP 611 (686)
Q Consensus 537 f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR---~Lr~vIe~i--l~~al~e~~ 611 (686)
+.+|+.+++..++.+. ..-|.. ..+....++++.+..+++..+. ..|+. .-|.+|... +++.+.+.|
T Consensus 330 L~~l~~eel~~l~~kl----r~i~a~---~~~~~~~v~d~~l~~~~~~~~~-r~G~~~~~tPR~~ik~fv~~Ld~~~q~p 401 (416)
T PF10923_consen 330 LQPLTPEELLELLEKL----RDIYAE---AYGYESRVDDEELKAFAQHVAG-RLGGDVFVTPREFIKDFVDVLDILEQNP 401 (416)
T ss_pred CCCCCHHHHHHHHHHH----HHHHHh---hCCCCCCCCHHHHHHHHHHHHh-ccCcccccCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999887752 222221 2345678999999999987444 44432 224444433 445555555
Q ss_pred CC
Q 005637 612 DV 613 (686)
Q Consensus 612 ~~ 613 (686)
+.
T Consensus 402 ~~ 403 (416)
T PF10923_consen 402 DF 403 (416)
T ss_pred CC
Confidence 53
No 407
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.42 E-value=0.015 Score=62.93 Aligned_cols=35 Identities=43% Similarity=0.589 Sum_probs=30.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..++++||+|+|||++|..||+.++.+++..|.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 57899999999999999999999998887777643
No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.41 E-value=0.033 Score=59.96 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++++.||+|+|||++++++...+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 7999999999999999999988773
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.38 E-value=0.034 Score=59.02 Aligned_cols=77 Identities=29% Similarity=0.324 Sum_probs=41.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc--ccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT--QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~--~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
=++|+|-||+|||++|+.|++.+ +...+.++...+. ...|.....++..+..+..+-.. ......||++|..--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r-~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER-ALSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH-HHTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH-hhccCeEEEEeCCch
Confidence 47899999999999999998876 4566667754443 12244444455555554433211 123458999998877
Q ss_pred cch
Q 005637 407 ITK 409 (686)
Q Consensus 407 l~~ 409 (686)
+..
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 644
No 410
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.37 E-value=0.042 Score=54.17 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=29.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
+..++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 3678899999999999999999887 334556666554
No 411
>PLN02459 probable adenylate kinase
Probab=95.36 E-value=0.015 Score=61.33 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=27.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.+++|.||||+||+++|+.||+.++.+++ ++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHH
Confidence 46889999999999999999999976554 44443
No 412
>PRK13764 ATPase; Provisional
Probab=95.36 E-value=0.026 Score=66.03 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++|++||||+||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999998874
No 413
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.34 E-value=0.071 Score=58.28 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=23.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.+++++|++|+|||++++++...+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999988774
No 414
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.34 E-value=0.053 Score=58.99 Aligned_cols=76 Identities=26% Similarity=0.249 Sum_probs=43.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---Cccccc-----------HHHHHHHHHhhcchhhHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGED-----------VESILYKLLTVSDYNVAA 393 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG~~-----------~~~~l~~l~~~a~~~ve~ 393 (686)
..++++||||||||+||..++... +.+.+.+|+..-..+ ...|.+ .+..+..+ ...+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~----~~li~~ 131 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIA----ETLVRS 131 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHhhc
Confidence 678899999999999988764433 556666666432110 001111 11111111 112223
Q ss_pred hcCcEEEEccccccchh
Q 005637 394 AQQGIVYIDEVDKITKK 410 (686)
Q Consensus 394 a~~gILfIDEIDkl~~~ 410 (686)
....+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 45679999999998764
No 415
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.014 Score=57.16 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+..++|.|+||+|||++|+.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998885
No 416
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.33 E-value=0.02 Score=57.88 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (686)
+++.|+||+|||++.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998874
No 417
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.016 Score=56.65 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=31.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
+..+++.|++|+|||++++++++.++.+|+ ++.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccCC
Confidence 468999999999999999999999999986 555564
No 418
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.29 E-value=0.02 Score=55.86 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
..++|.|+||+|||++|+.++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 678899999999999999999887 33455555543
No 419
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.29 E-value=0.02 Score=58.00 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
..+++.|+||+|||++|+.+|+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 6789999999999999999999987654
No 420
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.29 E-value=0.054 Score=55.36 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.+.||+|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999887544
No 421
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.28 E-value=0.012 Score=58.49 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.4
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999997666655444
No 422
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.26 E-value=0.019 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..+.++|++|+|||+++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 578999999999999999999998764
No 423
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.25 E-value=0.019 Score=54.70 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..++|.|+.|+|||+++|.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 678899999999999999999998753
No 424
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.21 E-value=0.085 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++|+||+|+|||++.|.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 57789999999999999999743
No 425
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.21 E-value=0.23 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
++.++.|||+-|+|||.|.-..-..+.
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 458999999999999999988877663
No 426
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.20 E-value=0.096 Score=56.38 Aligned_cols=24 Identities=54% Similarity=0.736 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++++.||+|+|||++++++.+.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 427
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.20 E-value=0.017 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999988753
No 428
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.19 E-value=0.46 Score=48.26 Aligned_cols=20 Identities=50% Similarity=0.833 Sum_probs=18.6
Q ss_pred eEEEEccCCChHHHHHHHHH
Q 005637 332 NILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA 351 (686)
+|||+|++|+|||+++..|.
T Consensus 2 ~IlllG~tGsGKSs~~N~il 21 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL 21 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999984
No 429
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.15 Score=53.52 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=56.0
Q ss_pred ceEEEEccCC-ChHHHHHHHHHHhcCC---------CEEEEecccc--cccCcccccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 331 SNILLMGPTG-SGKTLLAKTLARYVNV---------PFVIADATTL--TQAGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 331 ~~vLL~GPPG-TGKT~LAraLA~~l~~---------pfv~v~~s~l--~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
...||.|..+ ++|..++.-+++.+.. .+..+....- .....++.+.-+.+.+.+...+. .+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~---~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSA---ISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcc---cCCcEE
Confidence 6899999998 9999999998877622 2433332110 00122333322223333332222 245679
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
++||++|++... ..++||+.||
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLE 114 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILE 114 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhc
Confidence 999999999988 9999999999
No 430
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.17 E-value=0.22 Score=60.60 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=23.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
.-+++.||+|.|||+++..+++..+ ++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~ 60 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLG 60 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeE
Confidence 5789999999999999999877665 433
No 431
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.24 Score=57.33 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...+.|+||+|+|||+++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788899999999999999987653
No 432
>PLN02796 D-glycerate 3-kinase
Probab=95.12 E-value=0.75 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.-+-+.|++|+|||||+++|+..+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5677999999999999999998874
No 433
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.12 E-value=0.44 Score=51.11 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
.-++|+|+.|+|||++.+.|...+|....
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~~ 105 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYAT 105 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhhc
Confidence 57889999999999999999998876543
No 434
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.14 Score=60.55 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=81.1
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEe--eccceEEE
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI--DTKDILFI 464 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~V--dtsniIfI 464 (686)
.++.+.+|++|||||||+..|... .|..+|+.|..+...+.... ....+..+.. -...+.+|
T Consensus 217 ~pGaVHkAngGVLiIdei~lL~~~--------------~~w~~LKa~~~k~~~~~~~~--~~s~~~~v~~e~vP~d~klI 280 (647)
T COG1067 217 KPGAVHKANGGVLIIDEIGLLAQP--------------LQWKLLKALLDKEQPIWGSS--EPSSGAPVRPESVPLDLKLI 280 (647)
T ss_pred cCcccccccCcEEEEEhhhhhCcH--------------HHHHHHHHHHhccccccCcC--ccccCcccCCCCcccceEEE
Confidence 456788899999999999999987 88999998874433222222 1111211111 12246777
Q ss_pred ccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCc---C
Q 005637 465 CGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLAL---T 541 (686)
Q Consensus 465 ~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pL---s 541 (686)
+.||..++..+-. ..|+++.=+...+.|.+. +
T Consensus 281 ~~Gn~~~l~~l~~---------------------------------------------~~~~r~~g~~y~ae~~~~m~~~ 315 (647)
T COG1067 281 LAGNREDLEDLHE---------------------------------------------PDRSRIEGFGYEAEFEDTMPIT 315 (647)
T ss_pred eeCCHHHHHhhcc---------------------------------------------cCHHHHhhcceEEEEcCCCCCC
Confidence 7887544322210 112333333333555432 3
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCC-------CCCChhHHHHHHH
Q 005637 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-------KNTGARGLRSLLE 600 (686)
Q Consensus 542 ~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~-------~~~GAR~Lr~vIe 600 (686)
++...+.+... .+.+...+.-.+++.+|+..|..++-. -....|.|.++|+
T Consensus 316 ~~nr~k~~~~~--------~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~ 373 (647)
T COG1067 316 DANRSKLVQFY--------VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVR 373 (647)
T ss_pred hHHHHHHHHHH--------HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHH
Confidence 45555555432 223344455778999998888876432 1222467777777
No 435
>PRK10867 signal recognition particle protein; Provisional
Probab=95.11 E-value=0.12 Score=58.37 Aligned_cols=38 Identities=29% Similarity=0.500 Sum_probs=29.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~l~ 367 (686)
+..++|+|++|+|||+++-.+|..+ +.....+++..+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 5789999999999999888877654 5556667776543
No 436
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.10 E-value=0.014 Score=64.18 Aligned_cols=34 Identities=38% Similarity=0.772 Sum_probs=26.9
Q ss_pred CCCccccccCceEE-EEccCCChHHHHHHHHHHhc
Q 005637 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 321 ~~~~~v~~~~~~vL-L~GPPGTGKT~LAraLA~~l 354 (686)
.++.++.+.++-++ |.||+||||||+.|+||..-
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666665554 99999999999999999765
No 437
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.04 E-value=0.057 Score=65.04 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=49.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc-----c-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----Q-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~-----~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfI 401 (686)
..++|.|+||||||++++++...+ +..++-+-.+... + .|....+..+.+... .... .......+|+|
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~-~~~~--~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW-ANGR--DLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh-ccCc--ccCCCCcEEEE
Confidence 567899999999999999997554 4444444333221 0 122222222221111 1110 01134579999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
||+-.+... ....|+....
T Consensus 446 DEasMv~~~--------------~~~~Ll~~~~ 464 (744)
T TIGR02768 446 DEAGMVGSR--------------QMARVLKEAE 464 (744)
T ss_pred ECcccCCHH--------------HHHHHHHHHH
Confidence 999998766 5666776543
No 438
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.01 E-value=0.047 Score=54.36 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|.||+|+|||+|++.++..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 577799999999999999999876
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.00 E-value=0.2 Score=56.61 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=26.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~ 365 (686)
...++|+||+|+|||+++..||..+ +.....+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3688999999999999998887543 23455566544
No 440
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.00 E-value=0.019 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
..++|+||+|+|||++++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46889999999999999999997644
No 441
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.98 E-value=0.099 Score=51.69 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=25.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
+|++|++|+|||++|..++...+.+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 6899999999999999998876666665544
No 442
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.97 E-value=0.024 Score=56.58 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
...++|+||+|+|||+|++.+++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36889999999999999999999875
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.97 E-value=0.023 Score=53.92 Aligned_cols=26 Identities=42% Similarity=0.675 Sum_probs=22.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++|+||+|+|||++++.|++.+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 67899999999999999999875443
No 444
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.43 Score=53.87 Aligned_cols=24 Identities=42% Similarity=0.528 Sum_probs=21.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
+..+.|+||+|+||||+++.||..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999865
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.95 E-value=0.023 Score=56.94 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
+.-++|+||||+|||+|++.|.+....-+..++++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~T 38 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCT 38 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCcc
Confidence 46789999999999999999987763323334443
No 446
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.93 E-value=0.05 Score=59.75 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=23.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++|+.||+|+|||++++++...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 7999999999999999999998874
No 447
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.91 E-value=0.18 Score=60.46 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCCccccccC-ceEEEEccCCChHHHHHHHHHHhcCCC--EEEEecccc
Q 005637 320 GVDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (686)
Q Consensus 320 ~~~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~v~~s~l 366 (686)
...+.++++++ ..+.++|++|||||||+|.+...+... -+.+|.-++
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 44555666666 467899999999999999999877331 344554444
No 448
>PF13479 AAA_24: AAA domain
Probab=94.91 E-value=0.035 Score=56.48 Aligned_cols=20 Identities=60% Similarity=0.919 Sum_probs=18.7
Q ss_pred ceEEEEccCCChHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTL 350 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraL 350 (686)
-.++++|+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 68999999999999999887
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.90 E-value=0.096 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++|+||.|.|||++.+.++-.
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHH
Confidence 357889999999999999998644
No 450
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.89 E-value=0.14 Score=57.14 Aligned_cols=38 Identities=45% Similarity=0.687 Sum_probs=25.8
Q ss_pred cCceEEEEccCCChHHHHHHHH-HHhc------CCCEEEEecccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTL-ARYV------NVPFVIADATTL 366 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraL-A~~l------~~pfv~v~~s~l 366 (686)
+++.+.|+||+|+||||..--| |++. .+.+++.|.--+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 4689999999999998765444 4444 234666666443
No 451
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.88 E-value=0.069 Score=56.70 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=28.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
+..++|+||+|+|||+++..+|..+ +.....+++..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3688899999999999999998766 445555665443
No 452
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.84 E-value=0.069 Score=62.43 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC----CEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~----pfv~v~~s~l 366 (686)
..++|+|+||+|||++|++||+.++. ++..+|...+
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 68899999999999999999999864 3455565444
No 453
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.82 E-value=0.11 Score=56.81 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=44.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh---cCCCEEEEeccccccc---CcccccHHHHH-------HHHHhhcchhhHhhcCc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTLTQA---GYVGEDVESIL-------YKLLTVSDYNVAAAQQG 397 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~---l~~pfv~v~~s~l~~s---gyvG~~~~~~l-------~~l~~~a~~~ve~a~~g 397 (686)
+.+.++||||+|||+||-.++.. .+...+.+|...-..+ ...|.+....+ .+++......+......
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 57789999999999999887533 3666777776432110 00111111000 00111111122334568
Q ss_pred EEEEccccccchh
Q 005637 398 IVYIDEVDKITKK 410 (686)
Q Consensus 398 ILfIDEIDkl~~~ 410 (686)
+|+||-+..+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998763
No 454
>PRK13808 adenylate kinase; Provisional
Probab=94.81 E-value=0.025 Score=61.80 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.|+|+||||+|||++++.||+.++.+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 48999999999999999999999875543
No 455
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.80 E-value=0.13 Score=60.79 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...++.|+||||||++++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999988775443
No 456
>PRK12338 hypothetical protein; Provisional
Probab=94.76 E-value=0.029 Score=60.84 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=26.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
+..+++.|+||+|||++|+++|+.++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 36889999999999999999999998754
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.41 Score=57.65 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..++|+||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3688999999999999999998655
No 458
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.75 E-value=0.031 Score=56.09 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=30.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~v~~s~l~ 367 (686)
|.-+++.|+||+|||++++.+...+ ...++.+|..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4778899999999999999998888 7778889988875
No 459
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.72 E-value=0.18 Score=51.87 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++|+||.|+|||++.+.++..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH
Confidence 356789999999999999998644
No 460
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.69 E-value=0.11 Score=59.23 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=47.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE---EE-eccccccc--------CcccccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV---IA-DATTLTQA--------GYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv---~v-~~s~l~~s--------gyvG~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
+-+|+.||+|+|||++..++-+.++.+.. .+ |.-++.-+ .-.|-+....++.+++.. |-|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqD--------PDv 330 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQD--------PDV 330 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccC--------CCe
Confidence 67889999999999999999888865432 22 22233211 134556667777777654 469
Q ss_pred EEEcccccc
Q 005637 399 VYIDEVDKI 407 (686)
Q Consensus 399 LfIDEIDkl 407 (686)
|.+.||-..
T Consensus 331 ImVGEIRD~ 339 (500)
T COG2804 331 IMVGEIRDL 339 (500)
T ss_pred EEEeccCCH
Confidence 999999774
No 461
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.69 E-value=1.4 Score=49.72 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=27.6
Q ss_pred ceEEEEccCCChHHHHH--HHHHHhcCCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLA--KTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LA--raLA~~l~~pfv~v~~s~l~ 367 (686)
.-|++.||.|+||+.|+ ++|...- ..+.+||..+.
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~r~--~vL~IDC~~i~ 54 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKDRK--NVLVIDCDQIV 54 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhCCC--CEEEEEChHhh
Confidence 56788999999999999 6666543 37778888774
No 462
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.68 E-value=0.032 Score=59.73 Aligned_cols=34 Identities=38% Similarity=0.646 Sum_probs=29.9
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
++++||||+|||++|..||+.++..++.+|.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999988887776444
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.66 E-value=0.039 Score=54.94 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=24.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcC-CCEEEEeccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVN-VPFVIADATT 365 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~-~pfv~v~~s~ 365 (686)
+.|.||+|+|||+++++|++.++ .....+++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 57899999999999999999873 2333344433
No 464
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.65 E-value=0.2 Score=53.40 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=67.4
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
-+.++..+.+.+.+.|.....-.+..++..++.++. ..+...+-|+|.+++|||+
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-------------------------~~~~~~~hl~G~Ss~GKTt 208 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-------------------------GVEGFGFHLYGQSSSGKTT 208 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-------------------------CCCceEEEEEeCCCCCHHH
Confidence 356677777778788888877777666665554321 1123567799999999999
Q ss_pred HHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 346 LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
++++.+...|.|- .+. ..|-+.. ..+-..+. ..+...|+|||+....+.
T Consensus 209 ~~~~a~Sv~G~p~------~l~-~sw~~T~-n~le~~a~--------~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 209 ALQLAASVWGNPD------GLI-RSWNSTD-NGLERTAA--------AHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHHhhhhCcCch------hhh-hcchhhH-HHHHHHHH--------HcCCcceEehhccccchh
Confidence 9999999998876 222 1222221 12211211 234578999999886554
No 465
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.64 E-value=0.021 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.2
Q ss_pred EccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 336 MGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 336 ~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
+|+||+|||+++++++..++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998765533
No 466
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.61 E-value=0.092 Score=59.65 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=28.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC-EEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~p-fv~v~~ 363 (686)
+..++++|+||+|||++|..+|..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 4789999999999999999999999876 444444
No 467
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.036 Score=59.79 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=32.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..++++||+++|||.||-.||+.++.+++.+|.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 578999999999999999999999999999887554
No 468
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.59 E-value=0.087 Score=58.49 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+.+|++||+|+|||++++++.+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998776
No 469
>PRK08356 hypothetical protein; Provisional
Probab=94.59 E-value=0.038 Score=55.24 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..++|+||||+|||++|+.|++ .+.+ .+++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4688999999999999999965 5554 455554
No 470
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.58 E-value=0.035 Score=54.77 Aligned_cols=31 Identities=42% Similarity=0.671 Sum_probs=25.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+.++|++|+|||++++.+++ ++.+++ ++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~ 32 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKI 32 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHH
Confidence 67999999999999999999 776664 55444
No 471
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.58 E-value=0.031 Score=56.23 Aligned_cols=28 Identities=43% Similarity=0.484 Sum_probs=22.9
Q ss_pred EEEEccCCChHHHHHHHHHHhc-CCCEEE
Q 005637 333 ILLMGPTGSGKTLLAKTLARYV-NVPFVI 360 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l-~~pfv~ 360 (686)
|.+.|+||+|||++|+.|++.+ +..++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~ 30 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIH 30 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEc
Confidence 5788999999999999999998 344433
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=94.56 E-value=0.053 Score=53.63 Aligned_cols=27 Identities=44% Similarity=0.444 Sum_probs=24.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.-+.|.|++|+|||++++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999753
No 473
>PLN02840 tRNA dimethylallyltransferase
Probab=94.54 E-value=0.039 Score=62.00 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=31.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..+++.||+|+|||+||..||+.++.+++.+|.-.+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 568899999999999999999999988877776433
No 474
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.52 E-value=0.034 Score=64.59 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
..++|+|.||+|||++++.+|+.++.+|+-.|.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 579999999999999999999999999987665
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.50 E-value=0.04 Score=54.62 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=26.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcC---CCEEEEecccc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l 366 (686)
+.+.|+||+|||++|+.|++.+. .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 67899999999999999999873 45555555444
No 476
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.43 E-value=0.15 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.2
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005637 332 NILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~ 352 (686)
+|+|+|.||+|||+++.+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg 22 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILG 22 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhC
Confidence 689999999999999999953
No 477
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.42 E-value=0.03 Score=55.91 Aligned_cols=23 Identities=61% Similarity=0.860 Sum_probs=21.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcC
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
|.+.||||+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66899999999999999999986
No 478
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.41 E-value=0.1 Score=54.84 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~ 362 (686)
...++++||||||||++|-.++... +.+.+.++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3788899999999999998875432 44544444
No 479
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.40 E-value=0.19 Score=62.60 Aligned_cols=38 Identities=29% Similarity=0.511 Sum_probs=31.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l~ 367 (686)
...+-|+||+||||+|+...|=+.++. --+.+|..++.
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 467889999999999999999998854 36777777663
No 480
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.37 E-value=0.036 Score=63.57 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=29.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
++.|+|+||+|||++++.+|+.++.+|+..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 58999999999999999999999999986553
No 481
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.35 E-value=0.07 Score=51.09 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=24.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.++||.+|+|+|||.++-.++..+..+++.+-
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 78999999999999999976555544655544
No 482
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.33 E-value=0.079 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+|||+|++.|++.+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5778999999999999999998874
No 483
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.31 E-value=0.4 Score=47.43 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=39.5
Q ss_pred EccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 336 MGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 336 ~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
++.+|||||++|.+|++.++. +-.+...++.. . .....+...+.. +.+....++|+|-=.....+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~-k----~~~~f~~~~l~~----L~~~~~~vViaDRNNh~~re 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITG-K----RKPKFIKAVLEL----LAKDTHPVVIADRNNHQKRE 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCC-C----CHHHHHHHHHHH----HhhCCCCEEEEeCCCchHHH
Confidence 588999999999999999973 44455555531 1 112333222222 11235579999966655544
No 484
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.31 E-value=0.051 Score=52.88 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=28.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
.+++.||||+|||++++.+|..+ +.....+++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 47899999999999999998765 556777777543
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.29 E-value=0.036 Score=55.90 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.+.||+|+||||++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999998875
No 486
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.28 E-value=0.19 Score=51.15 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
...+++.|+||+|||++|..++... +.+.+.++..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3788899999999999998886432 5555555553
No 487
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.25 E-value=0.26 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...+++++++|.|||++|-.+|-.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH
Confidence 3789999999999999998886443
No 488
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.23 E-value=0.046 Score=56.10 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=26.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..+.+.||+|+|||++|+.||+.++.+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999987765
No 489
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.20 E-value=0.18 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHHHh
Q 005637 333 ILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~ 353 (686)
|++.|+||+|||+|.++|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999863
No 490
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.17 E-value=0.2 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=19.2
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
...+++||.|+|||++.++++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 488899999999999999984
No 491
>PRK06761 hypothetical protein; Provisional
Probab=94.16 E-value=0.055 Score=57.85 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.-+++.|+||+||||+++.+++.+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 46889999999999999999999876544444
No 492
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.10 E-value=0.3 Score=60.93 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=32.5
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhcCCC--EEEEecccc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~v~~s~l 366 (686)
++-++.+++ ..+.|+||+||||||+...|++.++.. -+.+|..++
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc
Confidence 334455554 677899999999999999999998543 344555544
No 493
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.09 E-value=0.072 Score=52.61 Aligned_cols=28 Identities=46% Similarity=0.701 Sum_probs=25.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
+.++|+||+|+|||+|++.|.+.....|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 6899999999999999999998886555
No 494
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.07 E-value=0.12 Score=63.74 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcccccHHHHHHHHHhhc-chhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVS-DYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a-~~~ve~a~~gILfIDE 403 (686)
..+++.|++|||||++.+++.+.+ +..++-+-.+.... .+-.|.. ...+..++... ..........||+|||
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVDE 441 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVIDE 441 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcEEEEEC
Confidence 467899999999999998876554 44444333332211 0111211 12223322110 0000123456999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+..+... ....||+..+
T Consensus 442 ASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 442 AGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred cccCCHH--------------HHHHHHHhhh
Confidence 9998766 6777777654
No 495
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.04 E-value=0.035 Score=60.72 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=25.7
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++++.. .-+.|.||+||||||+.|.||...
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334455555 457799999999999999999776
No 496
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.038 Score=57.62 Aligned_cols=45 Identities=31% Similarity=0.556 Sum_probs=30.6
Q ss_pred CCccccccCceEE-EEccCCChHHHHHHHHHHhcCCC--EEEEecccc
Q 005637 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (686)
Q Consensus 322 ~~~~v~~~~~~vL-L~GPPGTGKT~LAraLA~~l~~p--fv~v~~s~l 366 (686)
+..++++.++-.+ |+||+|||||||+|++|...... -+.++...+
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 4445565555555 99999999999999999876332 244444433
No 497
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.02 E-value=0.048 Score=54.92 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.+.++|++|+|||++++.+++.+|.+++ |+..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 5889999999999999999998887776 55444
No 498
>PRK09354 recA recombinase A; Provisional
Probab=94.02 E-value=0.24 Score=54.56 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=43.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh---cCCCEEEEecccccccC---cccccHHHHH-------HHHHhhcchhhHhhcCc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTLTQAG---YVGEDVESIL-------YKLLTVSDYNVAAAQQG 397 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~---l~~pfv~v~~s~l~~sg---yvG~~~~~~l-------~~l~~~a~~~ve~a~~g 397 (686)
+.++++||||||||+||-.++.. .+...+.+|...-..+. -.|.+....+ ...+......+......
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 57789999999999999877433 35666666664421100 0111110000 00111111122334567
Q ss_pred EEEEccccccch
Q 005637 398 IVYIDEVDKITK 409 (686)
Q Consensus 398 ILfIDEIDkl~~ 409 (686)
+|+||=+-.+.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.98 E-value=0.27 Score=55.61 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=29.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~l 366 (686)
+..++++|++|+|||++|..+|..+ +.....+++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4789999999999999988887664 456666777654
No 500
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.97 E-value=0.049 Score=56.09 Aligned_cols=30 Identities=37% Similarity=0.531 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+.+.||+|+|||++|+.+|+.++.+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 578899999999999999999999987753
Done!