Query 005637
Match_columns 686
No_of_seqs 394 out of 3496
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 2.9E-42 9.8E-47 370.1 22.4 343 265-634 3-346 (363)
2 1um8_A ATP-dependent CLP prote 100.0 2.6E-37 9E-42 332.8 27.3 349 263-634 7-362 (376)
3 1g41_A Heat shock protein HSLU 100.0 4.2E-36 1.4E-40 331.8 24.2 287 265-633 3-429 (444)
4 1ofh_A ATP-dependent HSL prote 100.0 2E-27 6.7E-32 245.8 21.5 288 265-634 3-296 (310)
5 1r6b_X CLPA protein; AAA+, N-t 100.0 2.4E-27 8.1E-32 277.4 22.8 273 255-610 432-719 (758)
6 3pxi_A Negative regulator of g 99.9 2.6E-26 8.9E-31 269.0 23.1 259 255-612 465-730 (758)
7 4fcw_A Chaperone protein CLPB; 99.9 6.2E-26 2.1E-30 235.7 21.3 261 269-611 9-283 (311)
8 1qvr_A CLPB protein; coiled co 99.9 6.9E-26 2.4E-30 268.9 21.8 276 254-611 531-824 (854)
9 4b4t_J 26S protease regulatory 99.9 1.4E-23 4.8E-28 229.1 20.3 221 278-609 149-372 (405)
10 4b4t_I 26S protease regulatory 99.9 1.1E-22 3.7E-27 223.1 20.1 221 278-609 183-406 (437)
11 4b4t_M 26S protease regulatory 99.9 1.4E-22 4.7E-27 223.6 20.2 222 278-609 182-405 (434)
12 4b4t_L 26S protease subunit RP 99.9 3.1E-22 1.1E-26 220.9 21.4 222 278-609 182-405 (437)
13 4b4t_H 26S protease regulatory 99.9 3.1E-22 1.1E-26 221.3 20.2 222 278-609 210-433 (467)
14 4b4t_K 26S protease regulatory 99.9 5.7E-22 1.9E-26 218.4 20.9 222 277-609 172-397 (428)
15 3syl_A Protein CBBX; photosynt 99.9 1.7E-21 5.8E-26 202.4 20.0 236 266-611 20-267 (309)
16 3m6a_A ATP-dependent protease 99.9 1.8E-21 6.3E-26 220.5 18.3 243 266-611 70-320 (543)
17 1xwi_A SKD1 protein; VPS4B, AA 99.8 4.3E-20 1.5E-24 195.9 20.9 221 278-610 13-234 (322)
18 3eie_A Vacuolar protein sortin 99.8 2.5E-20 8.4E-25 197.0 18.1 220 279-610 20-239 (322)
19 2qp9_X Vacuolar protein sortin 99.8 7.2E-20 2.5E-24 196.6 18.5 221 278-610 52-272 (355)
20 2bjv_A PSP operon transcriptio 99.8 1.3E-19 4.4E-24 185.2 19.0 221 279-606 8-240 (265)
21 1ojl_A Transcriptional regulat 99.8 2.9E-20 9.9E-25 195.8 13.7 223 277-605 2-234 (304)
22 3cf2_A TER ATPase, transitiona 99.8 1.5E-20 5.1E-25 220.8 8.0 224 278-611 478-703 (806)
23 3cf0_A Transitional endoplasmi 99.8 3E-19 1E-23 187.1 16.3 222 279-610 17-240 (301)
24 2zan_A Vacuolar protein sortin 99.8 3.9E-19 1.3E-23 196.6 16.4 221 278-610 135-356 (444)
25 3vfd_A Spastin; ATPase, microt 99.8 1.6E-18 5.6E-23 187.6 19.8 223 278-611 116-338 (389)
26 3d8b_A Fidgetin-like protein 1 99.8 2.7E-18 9.3E-23 184.2 21.2 223 278-611 85-307 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.8 2.8E-18 9.5E-23 177.6 19.7 223 278-610 22-244 (297)
28 3cf2_A TER ATPase, transitiona 99.8 4.1E-19 1.4E-23 208.6 14.9 219 278-609 205-425 (806)
29 3pfi_A Holliday junction ATP-d 99.8 7.5E-18 2.6E-22 177.5 23.2 206 278-607 30-235 (338)
30 3dzd_A Transcriptional regulat 99.8 7.8E-19 2.7E-23 189.9 11.2 190 331-604 153-359 (368)
31 1ny5_A Transcriptional regulat 99.8 1.7E-18 5.8E-23 188.3 13.1 197 331-605 161-369 (387)
32 3h4m_A Proteasome-activating n 99.8 8.8E-18 3E-22 172.6 17.8 218 279-609 19-241 (285)
33 2ce7_A Cell division protein F 99.8 1.5E-17 5.2E-22 185.6 20.6 219 278-608 17-238 (476)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.9E-17 9.8E-22 166.0 20.3 220 278-607 7-230 (262)
35 1lv7_A FTSH; alpha/beta domain 99.8 3.7E-17 1.2E-21 166.2 21.0 220 278-609 13-235 (257)
36 3hu3_A Transitional endoplasmi 99.7 4.6E-17 1.6E-21 182.4 16.6 222 278-612 205-428 (489)
37 3pvs_A Replication-associated 99.7 4.1E-17 1.4E-21 180.8 16.0 211 279-634 28-241 (447)
38 1g8p_A Magnesium-chelatase 38 99.7 2E-16 6.9E-21 166.5 19.6 205 331-609 46-305 (350)
39 2dhr_A FTSH; AAA+ protein, hex 99.7 2.5E-16 8.6E-21 176.7 21.6 219 278-608 32-253 (499)
40 1hqc_A RUVB; extended AAA-ATPa 99.7 4.1E-16 1.4E-20 162.6 21.5 202 279-604 14-216 (324)
41 3t15_A Ribulose bisphosphate c 99.7 5.1E-17 1.8E-21 169.9 13.6 159 330-551 36-196 (293)
42 2x8a_A Nuclear valosin-contain 99.7 4.9E-16 1.7E-20 161.3 16.9 225 278-611 11-238 (274)
43 3uk6_A RUVB-like 2; hexameric 99.7 1.4E-15 4.9E-20 161.5 20.7 213 278-609 45-313 (368)
44 1d2n_A N-ethylmaleimide-sensit 99.7 1.7E-16 5.7E-21 162.9 13.0 177 330-603 64-246 (272)
45 3u61_B DNA polymerase accessor 99.7 9.9E-16 3.4E-20 160.6 18.1 192 278-603 27-220 (324)
46 2r44_A Uncharacterized protein 99.7 2.5E-16 8.7E-21 165.8 13.4 229 270-608 20-279 (331)
47 3f9v_A Minichromosome maintena 99.7 3.8E-17 1.3E-21 187.1 5.5 256 270-607 288-568 (595)
48 2c9o_A RUVB-like 1; hexameric 99.6 1.6E-15 5.6E-20 167.8 17.3 104 277-411 37-142 (456)
49 1ixz_A ATP-dependent metallopr 99.6 8.3E-15 2.8E-19 148.6 19.2 219 279-609 18-239 (254)
50 2chg_A Replication factor C sm 99.6 1E-14 3.5E-19 141.1 18.7 187 278-604 18-209 (226)
51 2r62_A Cell division protease 99.6 1.3E-17 4.6E-22 170.0 -2.4 216 279-606 13-233 (268)
52 1iy2_A ATP-dependent metallopr 99.6 8.1E-15 2.8E-19 151.1 18.2 220 278-609 41-263 (278)
53 3n70_A Transport activator; si 99.6 2E-15 7E-20 141.3 9.9 97 278-434 2-101 (145)
54 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.6E-14 1.2E-18 159.4 21.5 229 269-609 14-269 (500)
55 1ypw_A Transitional endoplasmi 99.6 2.5E-17 8.4E-22 194.7 -5.4 224 278-612 478-704 (806)
56 1l8q_A Chromosomal replication 99.6 1.5E-14 5.3E-19 151.9 14.3 172 331-605 38-214 (324)
57 1iqp_A RFCS; clamp loader, ext 99.6 3.3E-14 1.1E-18 147.4 15.8 186 278-603 26-216 (327)
58 1njg_A DNA polymerase III subu 99.6 1.5E-13 5E-18 134.1 19.3 185 278-603 24-232 (250)
59 2chq_A Replication factor C sm 99.5 2E-14 6.7E-19 148.6 11.7 186 279-604 19-209 (319)
60 3k1j_A LON protease, ATP-depen 99.5 6.7E-14 2.3E-18 160.3 17.1 145 389-606 195-355 (604)
61 3co5_A Putative two-component 99.5 4.2E-15 1.5E-19 139.0 4.7 96 278-434 5-100 (143)
62 1sxj_D Activator 1 41 kDa subu 99.5 2.7E-14 9.1E-19 150.2 11.2 190 278-605 38-241 (353)
63 2v1u_A Cell division control p 99.5 9.7E-14 3.3E-18 146.8 15.4 213 277-607 19-257 (387)
64 1fnn_A CDC6P, cell division co 99.5 5.9E-13 2E-17 141.3 20.7 208 278-608 18-256 (389)
65 1in4_A RUVB, holliday junction 99.5 1.4E-12 4.6E-17 138.6 23.3 205 279-608 27-232 (334)
66 1sxj_B Activator 1 37 kDa subu 99.5 1.8E-13 6.1E-18 141.6 15.3 184 279-604 23-214 (323)
67 2qby_B CDC6 homolog 3, cell di 99.5 3.9E-13 1.4E-17 142.9 18.2 204 277-606 20-252 (384)
68 3te6_A Regulatory protein SIR3 99.5 3.7E-13 1.3E-17 143.1 17.7 221 279-609 22-289 (318)
69 3bos_A Putative DNA replicatio 99.5 3E-13 1E-17 133.5 15.8 169 331-608 53-226 (242)
70 1jr3_A DNA polymerase III subu 99.5 8.4E-13 2.9E-17 139.8 20.3 185 279-604 18-226 (373)
71 1sxj_A Activator 1 95 kDa subu 99.5 1.1E-12 3.8E-17 147.4 21.6 202 279-603 41-256 (516)
72 1jbk_A CLPB protein; beta barr 99.5 7.8E-14 2.7E-18 131.8 9.0 162 277-549 22-194 (195)
73 2z4s_A Chromosomal replication 99.5 4.5E-13 1.5E-17 148.0 16.5 175 331-608 131-315 (440)
74 1ypw_A Transitional endoplasmi 99.4 4.3E-13 1.5E-17 158.6 14.9 218 278-608 205-424 (806)
75 1sxj_C Activator 1 40 kDa subu 99.4 9.9E-13 3.4E-17 139.3 14.9 183 279-602 27-215 (340)
76 1sxj_E Activator 1 40 kDa subu 99.4 1.2E-12 4E-17 138.3 15.3 65 523-604 177-242 (354)
77 2qby_A CDC6 homolog 1, cell di 99.4 2.2E-12 7.6E-17 136.1 15.7 211 278-607 21-253 (386)
78 1qvr_A CLPB protein; coiled co 99.4 6.9E-13 2.3E-17 157.6 13.1 186 279-585 172-368 (854)
79 3f8t_A Predicted ATPase involv 99.4 1.5E-12 5E-17 144.4 13.6 239 270-611 207-466 (506)
80 3pxg_A Negative regulator of g 99.4 2E-13 6.9E-18 151.8 6.5 169 279-584 182-360 (468)
81 1r6b_X CLPA protein; AAA+, N-t 99.4 4.6E-12 1.6E-16 148.2 16.8 210 274-604 184-407 (758)
82 2p65_A Hypothetical protein PF 99.4 1.4E-12 4.8E-17 123.3 9.2 117 277-434 22-149 (187)
83 1a5t_A Delta prime, HOLB; zinc 99.3 1.2E-11 4.1E-16 131.3 16.8 157 331-599 25-205 (334)
84 3pxi_A Negative regulator of g 99.3 1.1E-12 3.6E-17 153.9 7.1 169 279-584 182-360 (758)
85 2gno_A DNA polymerase III, gam 99.3 7.1E-12 2.4E-16 132.3 11.8 144 281-551 1-150 (305)
86 1w5s_A Origin recognition comp 99.1 1.3E-09 4.5E-14 116.6 16.6 221 277-607 22-274 (412)
87 4akg_A Glutathione S-transfera 98.8 2E-08 6.7E-13 130.7 13.1 159 330-555 1267-1433(2695)
88 3ec2_A DNA replication protein 98.7 4.1E-08 1.4E-12 94.0 8.8 82 331-434 39-127 (180)
89 2qen_A Walker-type ATPase; unk 98.6 9.6E-07 3.3E-11 91.7 19.0 52 278-365 13-64 (350)
90 2w58_A DNAI, primosome compone 98.5 1.2E-07 4.1E-12 92.1 6.1 37 331-367 55-94 (202)
91 2kjq_A DNAA-related protein; s 98.4 3.2E-07 1.1E-11 86.5 6.4 69 331-434 37-108 (149)
92 1jr3_D DNA polymerase III, del 98.4 1.2E-06 4E-11 92.6 10.8 167 331-604 19-190 (343)
93 2fna_A Conserved hypothetical 98.4 5.6E-06 1.9E-10 86.0 15.8 36 331-366 31-66 (357)
94 4akg_A Glutathione S-transfera 98.3 5.5E-06 1.9E-10 108.3 17.9 67 331-410 646-712 (2695)
95 3vkg_A Dynein heavy chain, cyt 98.2 1.7E-06 5.9E-11 113.7 10.2 154 330-555 1304-1471(3245)
96 1u0j_A DNA replication protein 98.2 3E-06 1E-10 87.9 9.8 26 331-356 105-130 (267)
97 3cmw_A Protein RECA, recombina 98.2 3.5E-06 1.2E-10 105.9 10.7 146 279-435 1022-1203(1706)
98 2qgz_A Helicase loader, putati 98.1 3.7E-07 1.3E-11 96.1 -1.2 37 331-367 153-193 (308)
99 1tue_A Replication protein E1; 97.9 5.4E-06 1.9E-10 83.0 4.0 77 331-440 59-135 (212)
100 2vhj_A Ntpase P4, P4; non- hyd 97.8 3E-05 1E-09 82.5 6.9 72 331-410 124-197 (331)
101 3vkg_A Dynein heavy chain, cyt 97.7 0.00039 1.3E-08 92.0 17.5 67 331-410 605-671 (3245)
102 1ye8_A Protein THEP1, hypothet 97.4 0.0014 4.7E-08 63.4 12.1 27 332-358 2-28 (178)
103 3cmu_A Protein RECA, recombina 97.3 0.00024 8.3E-09 90.6 7.9 79 329-411 1426-1521(2050)
104 1qhx_A CPT, protein (chloramph 97.3 0.00018 6.1E-09 67.9 4.5 35 331-365 4-38 (178)
105 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 68.7 3.4 32 331-362 6-37 (185)
106 2r2a_A Uncharacterized protein 97.1 0.00053 1.8E-08 67.8 6.3 74 331-410 6-102 (199)
107 3vaa_A Shikimate kinase, SK; s 97.1 0.00021 7.3E-09 69.4 3.4 32 331-362 26-57 (199)
108 3upu_A ATP-dependent DNA helic 97.1 0.0017 5.7E-08 71.6 10.3 86 331-434 46-153 (459)
109 1qzm_A ATP-dependent protease 97.0 0.0017 5.9E-08 57.0 7.8 86 538-631 1-86 (94)
110 3kb2_A SPBC2 prophage-derived 96.9 0.00047 1.6E-08 64.2 3.9 31 332-362 3-33 (173)
111 2ehv_A Hypothetical protein PH 96.9 0.0015 5E-08 64.6 7.8 22 330-351 30-51 (251)
112 1zuh_A Shikimate kinase; alpha 96.9 0.00047 1.6E-08 64.7 3.2 30 331-360 8-37 (168)
113 1via_A Shikimate kinase; struc 96.9 0.0004 1.4E-08 65.7 2.8 29 332-360 6-34 (175)
114 2orw_A Thymidine kinase; TMTK, 96.9 0.0011 3.6E-08 64.4 5.8 23 331-353 4-26 (184)
115 2iyv_A Shikimate kinase, SK; t 96.9 0.00048 1.6E-08 65.5 3.2 31 331-361 3-33 (184)
116 3iij_A Coilin-interacting nucl 96.9 0.00048 1.6E-08 65.4 3.2 30 331-360 12-41 (180)
117 2rhm_A Putative kinase; P-loop 96.8 0.00053 1.8E-08 65.3 3.4 30 331-360 6-35 (193)
118 1kag_A SKI, shikimate kinase I 96.8 0.00055 1.9E-08 64.2 3.2 29 331-359 5-33 (173)
119 1zp6_A Hypothetical protein AT 96.8 0.00076 2.6E-08 64.3 4.2 36 331-366 10-45 (191)
120 1tev_A UMP-CMP kinase; ploop, 96.8 0.00059 2E-08 64.7 3.1 30 330-359 3-32 (196)
121 1y63_A LMAJ004144AAA protein; 96.7 0.00062 2.1E-08 65.3 3.0 29 331-359 11-40 (184)
122 2cdn_A Adenylate kinase; phosp 96.7 0.00081 2.8E-08 65.1 3.6 31 331-361 21-51 (201)
123 2c95_A Adenylate kinase 1; tra 96.7 0.00075 2.6E-08 64.4 3.2 31 331-361 10-40 (196)
124 2ze6_A Isopentenyl transferase 96.7 0.00089 3E-08 68.1 3.8 32 332-363 3-34 (253)
125 3lw7_A Adenylate kinase relate 96.7 0.00078 2.7E-08 62.2 3.1 29 331-360 2-30 (179)
126 1aky_A Adenylate kinase; ATP:A 96.6 0.00094 3.2E-08 65.6 3.2 31 331-361 5-35 (220)
127 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.8E-08 64.1 3.7 30 331-360 19-48 (202)
128 1e6c_A Shikimate kinase; phosp 96.6 0.00088 3E-08 62.7 2.8 30 331-360 3-32 (173)
129 1kht_A Adenylate kinase; phosp 96.6 0.0008 2.7E-08 63.7 2.4 25 331-355 4-28 (192)
130 2bwj_A Adenylate kinase 5; pho 96.6 0.00094 3.2E-08 63.8 2.9 29 331-359 13-41 (199)
131 3dl0_A Adenylate kinase; phosp 96.5 0.0011 3.9E-08 64.6 3.5 30 332-361 2-31 (216)
132 2vli_A Antibiotic resistance p 96.5 0.0012 4E-08 62.4 3.3 29 331-359 6-34 (183)
133 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.6E-08 62.3 3.6 29 331-359 5-33 (186)
134 2pt5_A Shikimate kinase, SK; a 96.5 0.0012 4.1E-08 61.5 3.2 30 332-361 2-31 (168)
135 1qf9_A UMP/CMP kinase, protein 96.5 0.0011 3.9E-08 62.6 3.0 31 331-361 7-37 (194)
136 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.5E-08 61.5 3.4 27 331-357 3-30 (181)
137 3kl4_A SRP54, signal recogniti 96.5 0.011 3.7E-07 65.3 11.1 36 329-364 96-134 (433)
138 1knq_A Gluconate kinase; ALFA/ 96.5 0.0014 4.8E-08 61.7 3.4 34 331-366 9-42 (175)
139 3fb4_A Adenylate kinase; psych 96.5 0.0013 4.5E-08 64.1 3.3 30 332-361 2-31 (216)
140 1zd8_A GTP:AMP phosphotransfer 96.5 0.0013 4.4E-08 65.0 3.2 31 331-361 8-38 (227)
141 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0052 1.8E-07 59.6 7.5 32 331-362 24-58 (235)
142 3dm5_A SRP54, signal recogniti 96.4 0.013 4.3E-07 64.9 11.4 38 329-366 99-139 (443)
143 1ak2_A Adenylate kinase isoenz 96.4 0.0013 4.6E-08 65.3 3.3 31 331-361 17-47 (233)
144 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0057 2E-07 62.1 7.9 36 331-366 5-43 (260)
145 2b8t_A Thymidine kinase; deoxy 96.4 0.0073 2.5E-07 60.8 8.4 32 330-361 12-46 (223)
146 1ukz_A Uridylate kinase; trans 96.4 0.0016 5.4E-08 62.9 3.4 32 331-362 16-47 (203)
147 2cvh_A DNA repair and recombin 96.4 0.014 4.9E-07 56.3 10.2 35 331-365 21-55 (220)
148 3e1s_A Exodeoxyribonuclease V, 96.4 0.0054 1.8E-07 69.9 8.2 86 331-434 205-304 (574)
149 3be4_A Adenylate kinase; malar 96.4 0.0016 5.4E-08 64.1 3.3 31 331-361 6-36 (217)
150 1n0w_A DNA repair protein RAD5 96.4 0.0048 1.7E-07 60.6 6.8 35 331-365 25-68 (243)
151 2p5t_B PEZT; postsegregational 96.4 0.0017 6E-08 65.6 3.6 38 330-367 32-69 (253)
152 4eun_A Thermoresistant glucoki 96.3 0.0022 7.5E-08 62.2 4.0 35 330-366 29-63 (200)
153 3tlx_A Adenylate kinase 2; str 96.3 0.0016 5.6E-08 65.5 3.2 31 331-361 30-60 (243)
154 1zak_A Adenylate kinase; ATP:A 96.3 0.0011 3.8E-08 65.2 1.9 29 331-359 6-34 (222)
155 2r8r_A Sensor protein; KDPD, P 96.3 0.017 5.9E-07 58.4 10.3 33 331-363 7-42 (228)
156 3sr0_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 63.4 4.0 33 332-366 2-34 (206)
157 2pez_A Bifunctional 3'-phospho 96.3 0.0034 1.2E-07 59.4 4.9 36 331-366 6-44 (179)
158 1e4v_A Adenylate kinase; trans 96.2 0.002 6.9E-08 63.1 3.2 30 332-361 2-31 (214)
159 3crm_A TRNA delta(2)-isopenten 96.2 0.0026 8.9E-08 67.6 4.1 34 331-364 6-39 (323)
160 2fz4_A DNA repair protein RAD2 96.2 0.012 4.1E-07 59.0 8.8 34 331-364 109-142 (237)
161 2zr9_A Protein RECA, recombina 96.2 0.0081 2.8E-07 64.2 7.9 76 330-409 61-153 (349)
162 3umf_A Adenylate kinase; rossm 96.2 0.0028 9.5E-08 63.6 4.0 29 331-359 30-58 (217)
163 1gvn_B Zeta; postsegregational 96.2 0.0028 9.7E-08 65.7 4.2 37 330-366 33-69 (287)
164 2pbr_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 59.3 4.5 31 332-362 2-35 (195)
165 1cke_A CK, MSSA, protein (cyti 96.1 0.0035 1.2E-07 61.3 4.2 29 331-359 6-34 (227)
166 2jaq_A Deoxyguanosine kinase; 96.1 0.0032 1.1E-07 60.1 3.7 28 332-359 2-29 (205)
167 2v54_A DTMP kinase, thymidylat 96.1 0.0039 1.3E-07 59.8 4.4 32 331-362 5-37 (204)
168 3uie_A Adenylyl-sulfate kinase 96.1 0.0039 1.3E-07 60.4 4.2 36 331-366 26-64 (200)
169 1svm_A Large T antigen; AAA+ f 96.0 0.0031 1.1E-07 68.3 3.7 61 331-409 170-230 (377)
170 3a8t_A Adenylate isopentenyltr 96.0 0.003 1E-07 67.6 3.4 34 331-364 41-74 (339)
171 2if2_A Dephospho-COA kinase; a 96.0 0.003 1E-07 60.9 3.1 30 332-362 3-32 (204)
172 1nks_A Adenylate kinase; therm 96.0 0.0024 8.3E-08 60.3 2.3 24 332-355 3-26 (194)
173 1u94_A RECA protein, recombina 96.0 0.011 3.7E-07 63.5 7.5 76 330-409 63-155 (356)
174 1uf9_A TT1252 protein; P-loop, 96.0 0.0039 1.3E-07 59.7 3.6 30 330-360 8-37 (203)
175 3hr8_A Protein RECA; alpha and 96.0 0.025 8.5E-07 60.8 10.2 76 330-409 61-153 (356)
176 2xb4_A Adenylate kinase; ATP-b 95.9 0.0029 1E-07 62.6 2.8 29 332-360 2-30 (223)
177 3ake_A Cytidylate kinase; CMP 95.9 0.004 1.4E-07 59.8 3.6 30 332-361 4-33 (208)
178 2z0h_A DTMP kinase, thymidylat 95.9 0.0057 2E-07 58.2 4.4 31 332-362 2-35 (197)
179 1jjv_A Dephospho-COA kinase; P 95.9 0.0039 1.3E-07 60.3 3.2 29 331-360 3-31 (206)
180 2bbw_A Adenylate kinase 4, AK4 95.8 0.0055 1.9E-07 61.3 4.1 30 330-359 27-56 (246)
181 2wwf_A Thymidilate kinase, put 95.8 0.0026 8.9E-08 61.4 1.7 32 330-361 10-41 (212)
182 2plr_A DTMP kinase, probable t 95.8 0.005 1.7E-07 59.1 3.6 27 331-357 5-31 (213)
183 3nwj_A ATSK2; P loop, shikimat 95.8 0.0038 1.3E-07 63.8 2.8 30 331-360 49-78 (250)
184 3jvv_A Twitching mobility prot 95.8 0.016 5.6E-07 62.1 7.8 24 331-354 124-147 (356)
185 1xp8_A RECA protein, recombina 95.7 0.012 4.2E-07 63.3 6.7 76 330-409 74-166 (366)
186 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.025 8.4E-07 59.9 9.0 68 331-406 172-251 (330)
187 3io5_A Recombination and repai 95.7 0.01 3.6E-07 63.0 6.0 78 331-409 29-125 (333)
188 1nn5_A Similar to deoxythymidy 95.6 0.0032 1.1E-07 60.8 1.6 28 331-358 10-37 (215)
189 3cmu_A Protein RECA, recombina 95.6 0.02 6.9E-07 73.4 8.7 81 329-412 1080-1176(2050)
190 3r20_A Cytidylate kinase; stru 95.5 0.008 2.7E-07 60.9 4.1 29 331-359 10-38 (233)
191 2h92_A Cytidylate kinase; ross 95.5 0.0061 2.1E-07 59.4 3.2 30 331-360 4-33 (219)
192 3foz_A TRNA delta(2)-isopenten 95.5 0.007 2.4E-07 64.0 3.7 36 331-366 11-46 (316)
193 2yvu_A Probable adenylyl-sulfa 95.5 0.01 3.5E-07 56.5 4.5 36 330-365 13-51 (186)
194 2qor_A Guanylate kinase; phosp 95.5 0.0073 2.5E-07 58.6 3.5 26 330-355 12-37 (204)
195 2qt1_A Nicotinamide riboside k 95.5 0.006 2.1E-07 59.1 2.8 34 331-366 22-56 (207)
196 4e22_A Cytidylate kinase; P-lo 95.4 0.0093 3.2E-07 60.3 4.2 30 330-359 27-56 (252)
197 2grj_A Dephospho-COA kinase; T 95.4 0.0069 2.3E-07 59.3 3.0 34 331-366 13-46 (192)
198 3exa_A TRNA delta(2)-isopenten 95.4 0.0084 2.9E-07 63.6 3.8 34 331-364 4-37 (322)
199 3cmw_A Protein RECA, recombina 95.4 0.015 5E-07 73.7 6.6 81 329-409 731-824 (1706)
200 2qmh_A HPR kinase/phosphorylas 95.4 0.007 2.4E-07 60.3 3.0 40 326-366 30-69 (205)
201 1uj2_A Uridine-cytidine kinase 95.4 0.013 4.3E-07 59.0 5.0 37 331-367 23-67 (252)
202 1vht_A Dephospho-COA kinase; s 95.4 0.0077 2.6E-07 58.8 3.3 30 331-361 5-34 (218)
203 1kgd_A CASK, peripheral plasma 95.4 0.0093 3.2E-07 56.9 3.7 25 331-355 6-30 (180)
204 2z43_A DNA repair and recombin 95.3 0.022 7.7E-07 59.7 6.8 36 330-365 107-151 (324)
205 1pzn_A RAD51, DNA repair and r 95.3 0.02 6.7E-07 61.1 6.4 36 330-365 131-175 (349)
206 2j41_A Guanylate kinase; GMP, 95.3 0.0092 3.1E-07 57.2 3.5 24 331-354 7-30 (207)
207 2ga8_A Hypothetical 39.9 kDa p 95.3 0.009 3.1E-07 64.3 3.6 30 331-360 25-54 (359)
208 1ltq_A Polynucleotide kinase; 95.2 0.0065 2.2E-07 62.3 2.2 29 331-359 3-32 (301)
209 3tr0_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 56.7 3.6 24 331-354 8-31 (205)
210 1q3t_A Cytidylate kinase; nucl 95.2 0.0096 3.3E-07 59.2 3.3 30 330-359 16-45 (236)
211 3tau_A Guanylate kinase, GMP k 95.2 0.01 3.6E-07 57.9 3.5 27 330-356 8-34 (208)
212 3d3q_A TRNA delta(2)-isopenten 95.1 0.01 3.5E-07 63.4 3.5 33 331-363 8-40 (340)
213 1m7g_A Adenylylsulfate kinase; 95.0 0.015 5E-07 56.8 4.0 36 331-366 26-65 (211)
214 1vma_A Cell division protein F 95.0 0.071 2.4E-06 55.9 9.5 35 330-364 104-141 (306)
215 2bdt_A BH3686; alpha-beta prot 94.9 0.012 4.2E-07 56.0 3.1 34 331-365 3-36 (189)
216 3fdi_A Uncharacterized protein 94.9 0.018 6.1E-07 56.5 4.4 29 331-359 7-35 (201)
217 3asz_A Uridine kinase; cytidin 94.9 0.01 3.5E-07 57.4 2.6 25 331-355 7-31 (211)
218 1g5t_A COB(I)alamin adenosyltr 94.9 0.093 3.2E-06 51.8 9.4 32 330-361 28-62 (196)
219 3eph_A TRNA isopentenyltransfe 94.9 0.012 4.1E-07 64.4 3.3 33 331-363 3-35 (409)
220 2i1q_A DNA repair and recombin 94.9 0.028 9.7E-07 58.5 6.0 24 330-353 98-121 (322)
221 3a00_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 55.6 3.3 25 331-355 2-26 (186)
222 3zvl_A Bifunctional polynucleo 94.7 0.013 4.4E-07 64.0 3.0 35 330-366 258-292 (416)
223 1w36_D RECD, exodeoxyribonucle 94.7 0.047 1.6E-06 62.4 7.8 24 331-354 165-188 (608)
224 3c8u_A Fructokinase; YP_612366 94.7 0.014 4.9E-07 56.8 3.0 25 331-355 23-47 (208)
225 3lda_A DNA repair protein RAD5 94.6 0.076 2.6E-06 57.8 8.9 36 330-365 178-222 (400)
226 1v5w_A DMC1, meiotic recombina 94.6 0.043 1.5E-06 58.1 6.7 36 330-365 122-166 (343)
227 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.6E-07 56.3 3.1 25 331-355 5-29 (198)
228 2v3c_C SRP54, signal recogniti 94.6 0.033 1.1E-06 61.3 5.8 36 330-365 99-137 (432)
229 2f6r_A COA synthase, bifunctio 94.5 0.016 5.3E-07 59.8 2.9 33 331-366 76-108 (281)
230 1z6g_A Guanylate kinase; struc 94.4 0.02 6.9E-07 56.5 3.4 33 322-354 14-47 (218)
231 1ex7_A Guanylate kinase; subst 94.4 0.025 8.5E-07 55.3 3.9 28 331-358 2-29 (186)
232 1rz3_A Hypothetical protein rb 94.4 0.039 1.3E-06 53.5 5.2 34 331-364 23-59 (201)
233 1znw_A Guanylate kinase, GMP k 94.3 0.024 8.3E-07 55.1 3.7 25 331-355 21-45 (207)
234 4a74_A DNA repair and recombin 94.2 0.026 8.8E-07 54.8 3.6 24 331-354 26-49 (231)
235 2jeo_A Uridine-cytidine kinase 94.2 0.026 8.8E-07 56.5 3.5 33 325-357 19-52 (245)
236 3ney_A 55 kDa erythrocyte memb 94.1 0.037 1.3E-06 54.6 4.6 26 330-355 19-44 (197)
237 2a5y_B CED-4; apoptosis; HET: 94.1 0.12 4E-06 58.1 9.1 44 280-352 131-174 (549)
238 1x6v_B Bifunctional 3'-phospho 93.8 0.039 1.3E-06 63.5 4.6 36 331-366 53-91 (630)
239 4gp7_A Metallophosphoesterase; 93.8 0.031 1E-06 52.9 3.2 21 331-351 10-30 (171)
240 1htw_A HI0065; nucleotide-bind 93.8 0.036 1.2E-06 52.5 3.6 24 331-354 34-57 (158)
241 3b6e_A Interferon-induced heli 93.8 0.054 1.8E-06 51.8 4.9 23 331-353 49-71 (216)
242 1sky_E F1-ATPase, F1-ATP synth 93.8 0.031 1E-06 62.3 3.5 24 331-354 152-175 (473)
243 1gtv_A TMK, thymidylate kinase 93.7 0.017 5.9E-07 55.7 1.2 25 332-356 2-26 (214)
244 2dr3_A UPF0273 protein PH0284; 93.7 0.059 2E-06 52.8 5.1 33 331-363 24-59 (247)
245 3kta_A Chromosome segregation 93.7 0.044 1.5E-06 51.6 3.9 31 325-355 21-51 (182)
246 1p9r_A General secretion pathw 93.6 0.14 4.8E-06 56.0 8.4 25 331-355 168-192 (418)
247 2oap_1 GSPE-2, type II secreti 93.5 0.11 3.9E-06 58.2 7.6 33 331-363 261-295 (511)
248 2eyu_A Twitching motility prot 93.5 0.04 1.4E-06 56.4 3.4 24 331-354 26-49 (261)
249 3p32_A Probable GTPase RV1496/ 93.4 0.084 2.9E-06 56.1 6.1 33 331-363 80-115 (355)
250 3lnc_A Guanylate kinase, GMP k 93.4 0.029 9.9E-07 55.4 2.2 24 331-354 28-52 (231)
251 1s96_A Guanylate kinase, GMP k 93.4 0.045 1.5E-06 54.5 3.6 25 331-355 17-41 (219)
252 1zu4_A FTSY; GTPase, signal re 93.4 0.14 4.8E-06 53.9 7.6 35 330-364 105-142 (320)
253 1xx6_A Thymidine kinase; NESG, 93.3 0.2 6.7E-06 49.0 8.0 31 331-361 9-42 (191)
254 2j37_W Signal recognition part 93.2 0.22 7.6E-06 55.8 9.4 34 330-363 101-137 (504)
255 3hdt_A Putative kinase; struct 93.2 0.052 1.8E-06 54.4 3.9 29 331-359 15-43 (223)
256 4eaq_A DTMP kinase, thymidylat 93.1 0.049 1.7E-06 54.4 3.5 25 331-355 27-51 (229)
257 1tf7_A KAIC; homohexamer, hexa 93.1 0.2 6.8E-06 56.0 8.8 36 330-365 39-78 (525)
258 3gmt_A Adenylate kinase; ssgci 93.1 0.056 1.9E-06 54.7 3.8 30 331-360 9-38 (230)
259 1odf_A YGR205W, hypothetical 3 93.0 0.11 3.6E-06 54.1 6.0 25 331-355 32-56 (290)
260 1w4r_A Thymidine kinase; type 93.0 0.31 1.1E-05 48.1 8.8 33 331-363 21-56 (195)
261 3sfz_A APAF-1, apoptotic pepti 92.9 0.29 1E-05 58.9 10.5 45 279-353 126-170 (1249)
262 2v9p_A Replication protein E1; 92.8 0.053 1.8E-06 57.0 3.4 24 331-354 127-150 (305)
263 2axn_A 6-phosphofructo-2-kinas 92.8 0.072 2.5E-06 59.9 4.5 37 330-366 35-74 (520)
264 2i3b_A HCR-ntpase, human cance 92.7 0.058 2E-06 52.5 3.1 24 331-354 2-25 (189)
265 1a7j_A Phosphoribulokinase; tr 92.7 0.046 1.6E-06 56.7 2.6 36 331-366 6-44 (290)
266 1rj9_A FTSY, signal recognitio 92.6 0.06 2E-06 56.4 3.4 25 330-354 102-126 (304)
267 2onk_A Molybdate/tungstate ABC 92.5 0.051 1.7E-06 54.9 2.6 33 323-355 17-49 (240)
268 3aez_A Pantothenate kinase; tr 92.5 0.062 2.1E-06 56.5 3.3 25 331-355 91-115 (312)
269 3tif_A Uncharacterized ABC tra 92.5 0.058 2E-06 54.2 3.0 34 323-356 23-57 (235)
270 1cr0_A DNA primase/helicase; R 92.5 0.064 2.2E-06 54.9 3.4 24 331-354 36-59 (296)
271 2pcj_A ABC transporter, lipopr 92.5 0.058 2E-06 53.7 2.9 33 323-355 22-55 (224)
272 1nlf_A Regulatory protein REPA 92.4 0.066 2.3E-06 54.5 3.3 25 330-354 30-54 (279)
273 3b9q_A Chloroplast SRP recepto 92.4 0.065 2.2E-06 56.0 3.3 25 330-354 100-124 (302)
274 2j9r_A Thymidine kinase; TK1, 92.4 0.43 1.5E-05 47.7 9.1 32 331-362 29-63 (214)
275 1sq5_A Pantothenate kinase; P- 92.4 0.11 3.9E-06 53.9 5.2 25 331-355 81-105 (308)
276 2cbz_A Multidrug resistance-as 92.2 0.064 2.2E-06 53.9 2.9 33 322-354 22-55 (237)
277 2ffh_A Protein (FFH); SRP54, s 92.2 0.19 6.6E-06 55.1 6.9 36 329-364 97-135 (425)
278 1z6t_A APAF-1, apoptotic prote 92.2 0.11 3.8E-06 58.2 5.1 44 279-352 126-169 (591)
279 2ewv_A Twitching motility prot 92.1 0.071 2.4E-06 57.3 3.3 24 331-354 137-160 (372)
280 4b3f_X DNA-binding protein smu 92.1 0.19 6.6E-06 57.6 7.1 33 331-363 206-241 (646)
281 1m8p_A Sulfate adenylyltransfe 92.1 0.087 3E-06 60.0 4.1 36 331-366 397-436 (573)
282 3e70_C DPA, signal recognition 92.0 0.078 2.7E-06 56.2 3.4 26 329-354 128-153 (328)
283 1p5z_B DCK, deoxycytidine kina 92.0 0.053 1.8E-06 54.7 2.0 26 330-355 24-49 (263)
284 2px0_A Flagellar biosynthesis 92.0 0.081 2.8E-06 55.1 3.4 37 329-365 104-144 (296)
285 1b0u_A Histidine permease; ABC 91.9 0.074 2.5E-06 54.3 3.0 33 323-355 24-57 (262)
286 1g6h_A High-affinity branched- 91.8 0.076 2.6E-06 54.0 3.0 33 323-355 25-58 (257)
287 2gza_A Type IV secretion syste 91.8 0.081 2.8E-06 56.5 3.3 32 331-362 176-209 (361)
288 1mv5_A LMRA, multidrug resista 91.7 0.078 2.7E-06 53.4 2.9 33 322-354 19-52 (243)
289 2pze_A Cystic fibrosis transme 91.7 0.08 2.7E-06 52.9 3.0 34 322-355 25-59 (229)
290 1bif_A 6-phosphofructo-2-kinas 91.7 0.05 1.7E-06 60.1 1.5 26 330-355 39-64 (469)
291 2zts_A Putative uncharacterize 91.7 0.16 5.6E-06 49.6 5.1 34 330-363 30-67 (251)
292 1sgw_A Putative ABC transporte 91.7 0.079 2.7E-06 52.7 2.8 33 323-355 27-60 (214)
293 1ji0_A ABC transporter; ATP bi 91.7 0.082 2.8E-06 53.2 3.0 32 324-355 25-57 (240)
294 2ff7_A Alpha-hemolysin translo 91.7 0.082 2.8E-06 53.5 3.0 33 323-355 27-60 (247)
295 3rlf_A Maltose/maltodextrin im 91.7 0.067 2.3E-06 58.0 2.4 33 323-355 21-54 (381)
296 3vkw_A Replicase large subunit 91.7 0.34 1.2E-05 53.5 8.1 23 331-353 162-184 (446)
297 3tqc_A Pantothenate kinase; bi 91.5 0.097 3.3E-06 55.4 3.5 25 331-355 93-117 (321)
298 3b85_A Phosphate starvation-in 91.5 0.074 2.5E-06 52.5 2.4 23 331-353 23-45 (208)
299 3cr8_A Sulfate adenylyltranfer 91.5 0.075 2.5E-06 60.3 2.7 36 331-366 370-409 (552)
300 3gfo_A Cobalt import ATP-bindi 91.5 0.085 2.9E-06 54.5 3.0 35 321-355 24-59 (275)
301 2og2_A Putative signal recogni 91.5 0.094 3.2E-06 56.3 3.4 25 330-354 157-181 (359)
302 1lw7_A Transcriptional regulat 91.4 0.1 3.5E-06 55.4 3.6 26 331-356 171-196 (365)
303 2olj_A Amino acid ABC transpor 91.4 0.088 3E-06 54.0 3.0 32 324-355 43-75 (263)
304 2qi9_C Vitamin B12 import ATP- 91.4 0.09 3.1E-06 53.4 3.0 32 324-355 19-51 (249)
305 3lxx_A GTPase IMAP family memb 91.4 0.49 1.7E-05 46.6 8.3 23 331-353 30-52 (239)
306 2ghi_A Transport protein; mult 91.4 0.09 3.1E-06 53.6 3.0 35 321-355 36-71 (260)
307 1c9k_A COBU, adenosylcobinamid 91.4 0.14 4.7E-06 49.9 4.1 31 333-364 2-32 (180)
308 2ixe_A Antigen peptide transpo 91.4 0.09 3.1E-06 54.0 3.0 33 323-355 37-70 (271)
309 2ocp_A DGK, deoxyguanosine kin 91.4 0.11 3.8E-06 51.5 3.5 25 331-355 3-27 (241)
310 4g1u_C Hemin import ATP-bindin 91.4 0.086 3E-06 54.0 2.8 33 323-355 29-62 (266)
311 3tqf_A HPR(Ser) kinase; transf 91.3 0.11 3.7E-06 50.7 3.3 33 326-359 12-44 (181)
312 2ihy_A ABC transporter, ATP-bi 91.3 0.094 3.2E-06 54.2 3.0 33 323-355 39-72 (279)
313 1hv8_A Putative ATP-dependent 91.2 0.49 1.7E-05 48.6 8.4 21 331-351 45-65 (367)
314 1kao_A RAP2A; GTP-binding prot 91.1 0.12 4.1E-06 46.5 3.3 23 331-353 4-26 (167)
315 1vpl_A ABC transporter, ATP-bi 91.1 0.099 3.4E-06 53.3 3.0 33 323-355 33-66 (256)
316 3thx_B DNA mismatch repair pro 91.1 0.43 1.5E-05 57.3 8.8 29 325-353 667-696 (918)
317 3fvq_A Fe(3+) IONS import ATP- 91.1 0.11 3.6E-06 56.0 3.2 33 323-355 22-55 (359)
318 2yz2_A Putative ABC transporte 91.1 0.1 3.5E-06 53.4 3.0 33 323-355 25-58 (266)
319 2d2e_A SUFC protein; ABC-ATPas 91.1 0.12 3.9E-06 52.4 3.4 30 324-353 22-52 (250)
320 2f9l_A RAB11B, member RAS onco 91.1 0.12 4E-06 49.3 3.3 24 331-354 6-29 (199)
321 2lkc_A Translation initiation 91.0 0.15 5.1E-06 46.8 3.9 23 330-352 8-30 (178)
322 1oix_A RAS-related protein RAB 91.0 0.11 3.8E-06 49.4 3.0 24 331-354 30-53 (191)
323 2nq2_C Hypothetical ABC transp 91.0 0.1 3.5E-06 53.0 2.9 33 323-355 23-56 (253)
324 1wb9_A DNA mismatch repair pro 91.0 0.3 1E-05 57.8 7.2 25 329-353 606-630 (800)
325 1ek0_A Protein (GTP-binding pr 91.0 0.12 4.1E-06 46.8 3.1 23 331-353 4-26 (170)
326 1u8z_A RAS-related protein RAL 91.0 0.13 4.4E-06 46.4 3.3 23 331-353 5-27 (168)
327 2ce2_X GTPase HRAS; signaling 90.9 0.13 4.4E-06 46.2 3.2 23 331-353 4-26 (166)
328 2zu0_C Probable ATP-dependent 90.9 0.12 4.2E-06 52.8 3.4 31 324-354 39-70 (267)
329 2f1r_A Molybdopterin-guanine d 90.8 0.08 2.8E-06 50.8 1.8 25 331-355 3-27 (171)
330 3ice_A Transcription terminati 90.8 0.28 9.6E-06 53.5 6.2 24 331-354 175-198 (422)
331 3sop_A Neuronal-specific septi 90.8 0.12 3.9E-06 53.2 3.1 24 331-354 3-26 (270)
332 2dyk_A GTP-binding protein; GT 90.8 0.14 4.7E-06 46.2 3.3 23 331-353 2-24 (161)
333 1z47_A CYSA, putative ABC-tran 90.7 0.12 4.1E-06 55.4 3.3 35 321-355 31-66 (355)
334 3thx_A DNA mismatch repair pro 90.7 0.52 1.8E-05 56.7 9.0 27 326-352 657-684 (934)
335 2p6r_A Afuhel308 helicase; pro 90.6 0.85 2.9E-05 52.5 10.5 19 331-349 41-59 (702)
336 1nrj_B SR-beta, signal recogni 90.6 0.15 5.1E-06 49.0 3.5 24 331-354 13-36 (218)
337 2it1_A 362AA long hypothetical 90.6 0.13 4.3E-06 55.4 3.3 33 323-355 21-54 (362)
338 4f4c_A Multidrug resistance pr 90.6 1.7 6E-05 54.0 13.9 42 323-364 436-480 (1321)
339 2yyz_A Sugar ABC transporter, 90.6 0.13 4.4E-06 55.3 3.3 33 323-355 21-54 (359)
340 2wji_A Ferrous iron transport 90.6 0.13 4.3E-06 47.5 2.9 23 331-353 4-26 (165)
341 1g8f_A Sulfate adenylyltransfe 90.5 0.12 4E-06 58.2 3.1 26 331-356 396-421 (511)
342 2pjz_A Hypothetical protein ST 90.5 0.099 3.4E-06 53.6 2.3 31 324-354 24-54 (263)
343 2iut_A DNA translocase FTSK; n 90.5 1.1 3.9E-05 50.8 11.2 35 331-365 215-256 (574)
344 1z2a_A RAS-related protein RAB 90.4 0.15 5.2E-06 46.1 3.3 23 331-353 6-28 (168)
345 1g29_1 MALK, maltose transport 90.4 0.13 4.6E-06 55.4 3.3 33 323-355 21-54 (372)
346 1v43_A Sugar-binding transport 90.4 0.13 4.6E-06 55.4 3.3 33 323-355 29-62 (372)
347 3d31_A Sulfate/molybdate ABC t 90.3 0.11 3.9E-06 55.4 2.7 33 323-355 18-51 (348)
348 4edh_A DTMP kinase, thymidylat 90.3 0.15 5.2E-06 50.5 3.4 26 330-355 6-31 (213)
349 1ls1_A Signal recognition part 90.2 0.29 9.9E-06 50.8 5.6 35 329-363 97-134 (295)
350 1c1y_A RAS-related protein RAP 90.2 0.16 5.6E-06 45.8 3.3 23 331-353 4-26 (167)
351 2wjg_A FEOB, ferrous iron tran 90.2 0.15 5.1E-06 47.5 3.0 23 331-353 8-30 (188)
352 2wsm_A Hydrogenase expression/ 90.1 0.23 8E-06 47.8 4.5 24 331-354 31-54 (221)
353 2yhs_A FTSY, cell division pro 90.1 0.15 5E-06 57.2 3.3 25 330-354 293-317 (503)
354 1xjc_A MOBB protein homolog; s 90.1 0.16 5.5E-06 48.8 3.2 24 331-354 5-28 (169)
355 2zej_A Dardarin, leucine-rich 90.1 0.12 4.2E-06 48.5 2.4 23 331-353 3-25 (184)
356 1m2o_B GTP-binding protein SAR 90.1 0.16 5.6E-06 48.1 3.3 23 330-352 23-45 (190)
357 2ged_A SR-beta, signal recogni 90.0 0.19 6.3E-06 47.2 3.5 24 331-354 49-72 (193)
358 2h17_A ADP-ribosylation factor 89.9 0.16 5.3E-06 47.5 2.9 24 330-353 21-44 (181)
359 3tui_C Methionine import ATP-b 89.8 0.13 4.3E-06 55.6 2.4 35 321-355 44-79 (366)
360 2bbs_A Cystic fibrosis transme 89.8 0.15 5.1E-06 53.0 2.9 33 322-354 55-88 (290)
361 3gd7_A Fusion complex of cysti 89.8 0.16 5.4E-06 55.2 3.2 33 322-354 38-71 (390)
362 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.22 7.7E-06 46.2 3.9 29 326-354 19-47 (149)
363 1np6_A Molybdopterin-guanine d 89.7 0.16 5.6E-06 48.8 3.0 24 331-354 7-30 (174)
364 1z0j_A RAB-22, RAS-related pro 89.7 0.19 6.5E-06 45.5 3.3 24 331-354 7-30 (170)
365 3nh6_A ATP-binding cassette SU 89.6 0.13 4.4E-06 54.0 2.3 32 325-356 74-106 (306)
366 2nzj_A GTP-binding protein REM 89.6 0.18 6.1E-06 46.1 3.0 22 331-352 5-26 (175)
367 4ag6_A VIRB4 ATPase, type IV s 89.5 0.28 9.6E-06 52.4 4.9 34 330-363 35-71 (392)
368 1oxx_K GLCV, glucose, ABC tran 89.5 0.12 4E-06 55.4 2.0 33 323-355 23-56 (353)
369 1g16_A RAS-related protein SEC 89.4 0.2 6.8E-06 45.4 3.2 23 331-353 4-26 (170)
370 2erx_A GTP-binding protein DI- 89.4 0.19 6.5E-06 45.5 3.0 22 331-352 4-25 (172)
371 1wms_A RAB-9, RAB9, RAS-relate 89.3 0.21 7.1E-06 45.8 3.3 23 331-353 8-30 (177)
372 1f6b_A SAR1; gtpases, N-termin 89.3 0.2 6.7E-06 47.9 3.2 23 330-352 25-47 (198)
373 2a5j_A RAS-related protein RAB 89.3 0.26 8.8E-06 46.4 4.0 24 330-353 21-44 (191)
374 1z08_A RAS-related protein RAB 89.3 0.21 7.1E-06 45.4 3.2 23 331-353 7-29 (170)
375 3con_A GTPase NRAS; structural 89.3 0.19 6.6E-06 46.9 3.1 25 329-353 20-44 (190)
376 2npi_A Protein CLP1; CLP1-PCF1 89.2 0.19 6.5E-06 55.7 3.4 24 331-354 139-162 (460)
377 1ky3_A GTP-binding protein YPT 89.2 0.21 7.1E-06 45.8 3.2 23 331-353 9-31 (182)
378 2gk6_A Regulator of nonsense t 89.2 0.28 9.5E-06 56.1 4.9 23 331-353 196-218 (624)
379 3lv8_A DTMP kinase, thymidylat 89.2 0.21 7.1E-06 50.5 3.3 25 330-354 27-51 (236)
380 1r2q_A RAS-related protein RAB 89.1 0.22 7.6E-06 45.0 3.3 22 331-352 7-28 (170)
381 2gj8_A MNME, tRNA modification 89.1 0.21 7E-06 46.7 3.1 23 331-353 5-27 (172)
382 1j8m_F SRP54, signal recogniti 89.1 0.28 9.5E-06 51.1 4.4 36 330-365 98-136 (297)
383 2a9k_A RAS-related protein RAL 89.1 0.21 7.3E-06 46.0 3.2 24 330-353 18-41 (187)
384 3v9p_A DTMP kinase, thymidylat 89.0 0.18 6.1E-06 50.6 2.8 24 331-354 26-49 (227)
385 3tmk_A Thymidylate kinase; pho 89.0 0.33 1.1E-05 48.4 4.6 27 331-357 6-32 (216)
386 3ihw_A Centg3; RAS, centaurin, 89.0 0.23 7.7E-06 46.9 3.4 25 329-353 19-43 (184)
387 3bc1_A RAS-related protein RAB 89.0 0.22 7.6E-06 46.1 3.3 23 331-353 12-34 (195)
388 3q72_A GTP-binding protein RAD 89.0 0.22 7.6E-06 45.1 3.2 22 331-352 3-24 (166)
389 1r8s_A ADP-ribosylation factor 89.0 0.23 7.9E-06 44.9 3.3 21 332-352 2-22 (164)
390 3q85_A GTP-binding protein REM 89.0 0.22 7.5E-06 45.3 3.1 22 331-352 3-24 (169)
391 1upt_A ARL1, ADP-ribosylation 89.0 0.25 8.5E-06 44.9 3.5 22 331-352 8-29 (171)
392 4i1u_A Dephospho-COA kinase; s 88.9 0.21 7.1E-06 49.8 3.1 31 331-362 10-40 (210)
393 1xti_A Probable ATP-dependent 88.9 1 3.6E-05 46.8 8.7 21 331-351 46-66 (391)
394 2y8e_A RAB-protein 6, GH09086P 88.9 0.22 7.4E-06 45.6 3.0 22 331-352 15-36 (179)
395 2hxs_A RAB-26, RAS-related pro 88.8 0.23 7.9E-06 45.5 3.2 22 331-352 7-28 (178)
396 2o8b_B DNA mismatch repair pro 88.8 0.45 1.6E-05 57.7 6.5 21 331-351 790-810 (1022)
397 2fn4_A P23, RAS-related protei 88.7 0.25 8.6E-06 45.2 3.4 23 331-353 10-32 (181)
398 2vp4_A Deoxynucleoside kinase; 88.7 0.17 5.9E-06 50.0 2.3 23 331-353 21-43 (230)
399 3bh0_A DNAB-like replicative h 88.6 0.35 1.2E-05 50.4 4.8 34 330-363 68-104 (315)
400 1z0f_A RAB14, member RAS oncog 88.5 0.26 8.8E-06 45.1 3.3 23 331-353 16-38 (179)
401 1pui_A ENGB, probable GTP-bind 88.5 0.13 4.4E-06 49.1 1.2 23 331-353 27-49 (210)
402 1svi_A GTP-binding protein YSX 88.5 0.25 8.7E-06 46.2 3.3 23 331-353 24-46 (195)
403 3k53_A Ferrous iron transport 88.5 0.23 8E-06 50.2 3.2 23 331-353 4-26 (271)
404 3tw8_B RAS-related protein RAB 88.4 0.23 8E-06 45.4 2.9 22 331-352 10-31 (181)
405 4dsu_A GTPase KRAS, isoform 2B 88.4 0.26 8.9E-06 45.5 3.3 23 331-353 5-27 (189)
406 3kkq_A RAS-related protein M-R 88.4 0.27 9.2E-06 45.5 3.3 24 330-353 18-41 (183)
407 1m7b_A RND3/RHOE small GTP-bin 88.3 0.26 9E-06 46.0 3.2 23 331-353 8-30 (184)
408 3clv_A RAB5 protein, putative; 88.2 0.29 9.9E-06 45.4 3.5 23 331-353 8-30 (208)
409 3t1o_A Gliding protein MGLA; G 88.2 0.28 9.6E-06 45.6 3.4 24 331-354 15-38 (198)
410 1z06_A RAS-related protein RAB 88.2 0.26 8.9E-06 46.1 3.2 23 330-352 20-42 (189)
411 1yrb_A ATP(GTP)binding protein 88.1 0.44 1.5E-05 47.2 5.0 33 331-363 15-49 (262)
412 2cxx_A Probable GTP-binding pr 88.1 0.24 8.2E-06 45.9 2.8 22 332-353 3-24 (190)
413 2h57_A ADP-ribosylation factor 88.1 0.21 7.4E-06 46.8 2.5 24 330-353 21-44 (190)
414 2bme_A RAB4A, RAS-related prot 88.1 0.28 9.4E-06 45.5 3.2 23 331-353 11-33 (186)
415 2oil_A CATX-8, RAS-related pro 88.1 0.28 9.5E-06 46.0 3.3 23 331-353 26-48 (193)
416 2xau_A PRE-mRNA-splicing facto 88.0 0.94 3.2E-05 53.2 8.4 21 331-351 110-130 (773)
417 2obl_A ESCN; ATPase, hydrolase 88.0 0.42 1.4E-05 50.9 5.0 27 331-357 72-98 (347)
418 2efe_B Small GTP-binding prote 88.0 0.29 9.8E-06 45.0 3.2 23 331-353 13-35 (181)
419 2g6b_A RAS-related protein RAB 87.8 0.3 1E-05 44.9 3.3 23 331-353 11-33 (180)
420 4tmk_A Protein (thymidylate ki 87.8 0.29 9.9E-06 48.5 3.3 24 331-354 4-27 (213)
421 3ld9_A DTMP kinase, thymidylat 87.8 0.29 1E-05 49.0 3.4 26 331-356 22-47 (223)
422 3pqc_A Probable GTP-binding pr 87.8 0.3 1E-05 45.4 3.2 23 331-353 24-46 (195)
423 1mh1_A RAC1; GTP-binding, GTPa 87.7 0.3 1E-05 45.0 3.3 23 331-353 6-28 (186)
424 2dpy_A FLII, flagellum-specifi 87.7 0.43 1.5E-05 52.4 5.0 27 331-357 158-184 (438)
425 2gks_A Bifunctional SAT/APS ki 87.7 0.39 1.3E-05 54.3 4.7 36 331-366 373-411 (546)
426 2bov_A RAla, RAS-related prote 87.6 0.32 1.1E-05 45.9 3.3 24 330-353 14-37 (206)
427 2xxa_A Signal recognition part 87.6 0.45 1.5E-05 52.2 5.0 38 329-366 99-140 (433)
428 1moz_A ARL1, ADP-ribosylation 87.5 0.24 8.2E-06 45.8 2.4 21 331-351 19-39 (183)
429 2atv_A RERG, RAS-like estrogen 87.5 0.34 1.2E-05 45.7 3.5 24 330-353 28-51 (196)
430 1x3s_A RAS-related protein RAB 87.4 0.29 1E-05 45.6 2.9 24 330-353 15-38 (195)
431 3bwd_D RAC-like GTP-binding pr 87.4 0.36 1.2E-05 44.4 3.5 23 331-353 9-31 (182)
432 2iwr_A Centaurin gamma 1; ANK 87.4 0.25 8.4E-06 45.5 2.4 24 330-353 7-30 (178)
433 2qm8_A GTPase/ATPase; G protei 87.4 0.3 1E-05 51.6 3.4 24 331-354 56-79 (337)
434 3tkl_A RAS-related protein RAB 87.4 0.33 1.1E-05 45.4 3.3 23 331-353 17-39 (196)
435 1ksh_A ARF-like protein 2; sma 87.3 0.3 1E-05 45.4 2.9 22 331-352 19-40 (186)
436 3ch4_B Pmkase, phosphomevalona 87.3 0.62 2.1E-05 46.1 5.3 39 327-365 8-47 (202)
437 2hf9_A Probable hydrogenase ni 87.2 0.34 1.2E-05 46.8 3.4 24 331-354 39-62 (226)
438 2gf9_A RAS-related protein RAB 87.2 0.34 1.1E-05 45.4 3.3 23 331-353 23-45 (189)
439 3t5g_A GTP-binding protein RHE 87.2 0.34 1.1E-05 44.8 3.2 22 331-352 7-28 (181)
440 2r6a_A DNAB helicase, replicat 87.2 0.48 1.6E-05 51.9 4.9 34 330-363 203-240 (454)
441 2p67_A LAO/AO transport system 87.1 0.46 1.6E-05 50.1 4.5 24 331-354 57-80 (341)
442 3qf7_A RAD50; ABC-ATPase, ATPa 87.0 0.26 8.9E-06 52.6 2.6 30 325-354 18-47 (365)
443 1tq4_A IIGP1, interferon-induc 87.0 0.46 1.6E-05 51.9 4.6 24 331-354 70-93 (413)
444 1tf7_A KAIC; homohexamer, hexa 87.0 0.32 1.1E-05 54.4 3.4 24 331-354 282-305 (525)
445 2wjy_A Regulator of nonsense t 86.9 0.46 1.6E-05 56.2 4.9 23 331-353 372-394 (800)
446 2gco_A H9, RHO-related GTP-bin 86.9 0.48 1.7E-05 45.0 4.3 24 330-353 25-48 (201)
447 3euj_A Chromosome partition pr 86.9 0.27 9.1E-06 54.9 2.7 32 323-354 22-53 (483)
448 3qks_A DNA double-strand break 86.9 0.4 1.4E-05 46.7 3.7 32 325-356 18-49 (203)
449 1wp9_A ATP-dependent RNA helic 86.9 0.89 3E-05 47.9 6.7 33 332-364 25-61 (494)
450 1vg8_A RAS-related protein RAB 86.9 0.36 1.2E-05 45.6 3.3 23 331-353 9-31 (207)
451 1zbd_A Rabphilin-3A; G protein 86.8 0.33 1.1E-05 45.9 3.0 23 331-353 9-31 (203)
452 2fg5_A RAB-22B, RAS-related pr 86.8 0.36 1.2E-05 45.5 3.2 23 331-353 24-46 (192)
453 2p5s_A RAS and EF-hand domain 86.8 0.38 1.3E-05 45.6 3.4 24 330-353 28-51 (199)
454 3dz8_A RAS-related protein RAB 86.8 0.36 1.2E-05 45.3 3.2 24 331-354 24-47 (191)
455 1ko7_A HPR kinase/phosphatase; 86.8 0.44 1.5E-05 50.3 4.2 33 326-359 140-172 (314)
456 1zj6_A ADP-ribosylation factor 86.7 0.36 1.2E-05 45.1 3.2 22 331-352 17-38 (187)
457 1fzq_A ADP-ribosylation factor 86.7 0.35 1.2E-05 45.2 3.1 23 331-353 17-39 (181)
458 3c5c_A RAS-like protein 12; GD 86.7 0.37 1.3E-05 45.4 3.3 23 331-353 22-44 (187)
459 2gf0_A GTP-binding protein DI- 86.7 0.39 1.3E-05 44.9 3.4 22 331-352 9-30 (199)
460 1zd9_A ADP-ribosylation factor 86.7 0.36 1.2E-05 45.3 3.1 24 330-353 22-45 (188)
461 3reg_A RHO-like small GTPase; 86.6 0.38 1.3E-05 45.2 3.3 23 331-353 24-46 (194)
462 3oes_A GTPase rhebl1; small GT 86.6 0.36 1.2E-05 45.8 3.1 24 330-353 24-47 (201)
463 4bas_A ADP-ribosylation factor 86.5 0.34 1.2E-05 45.4 2.9 23 330-352 17-39 (199)
464 2q6t_A DNAB replication FORK h 86.5 0.56 1.9E-05 51.2 5.0 33 331-363 201-237 (444)
465 2bcg_Y Protein YP2, GTP-bindin 86.5 0.38 1.3E-05 45.7 3.2 23 331-353 9-31 (206)
466 2www_A Methylmalonic aciduria 86.5 1.1 3.8E-05 47.4 7.2 24 331-354 75-98 (349)
467 2b6h_A ADP-ribosylation factor 86.2 0.41 1.4E-05 45.3 3.3 22 330-351 29-50 (192)
468 1u0l_A Probable GTPase ENGC; p 86.1 0.33 1.1E-05 50.3 2.8 26 329-354 168-193 (301)
469 2fh5_B SR-beta, signal recogni 86.0 0.42 1.5E-05 45.6 3.3 23 331-353 8-30 (214)
470 1knx_A Probable HPR(Ser) kinas 86.0 0.52 1.8E-05 49.7 4.2 40 326-366 143-182 (312)
471 3cph_A RAS-related protein SEC 86.0 0.44 1.5E-05 45.2 3.4 23 331-353 21-43 (213)
472 1gwn_A RHO-related GTP-binding 85.9 0.42 1.4E-05 46.1 3.2 23 331-353 29-51 (205)
473 2yv5_A YJEQ protein; hydrolase 85.8 0.43 1.5E-05 49.6 3.4 25 329-354 164-188 (302)
474 1e9r_A Conjugal transfer prote 85.7 0.59 2E-05 50.5 4.6 34 330-363 53-89 (437)
475 2ew1_A RAS-related protein RAB 85.7 0.43 1.5E-05 45.9 3.2 23 331-353 27-49 (201)
476 1yqt_A RNAse L inhibitor; ATP- 85.7 0.39 1.3E-05 54.1 3.3 25 330-354 47-71 (538)
477 3e2i_A Thymidine kinase; Zn-bi 85.6 1.5 5E-05 44.0 7.0 32 331-362 29-63 (219)
478 2atx_A Small GTP binding prote 85.5 0.45 1.5E-05 44.6 3.2 23 331-353 19-41 (194)
479 2rcn_A Probable GTPase ENGC; Y 85.5 0.39 1.3E-05 51.5 3.1 28 328-355 213-240 (358)
480 1h65_A Chloroplast outer envel 85.5 0.56 1.9E-05 47.3 4.0 23 331-353 40-62 (270)
481 1vt4_I APAF-1 related killer D 85.4 0.65 2.2E-05 56.6 5.1 44 278-352 129-172 (1221)
482 2fu5_C RAS-related protein RAB 85.4 0.29 9.9E-06 45.3 1.7 22 331-352 9-30 (183)
483 2qnr_A Septin-2, protein NEDD5 85.3 0.39 1.3E-05 49.8 2.9 23 331-353 19-41 (301)
484 2q3h_A RAS homolog gene family 85.3 0.44 1.5E-05 44.9 3.0 23 330-352 20-42 (201)
485 4a1f_A DNAB helicase, replicat 85.1 0.68 2.3E-05 49.2 4.6 34 330-363 46-82 (338)
486 2il1_A RAB12; G-protein, GDP, 85.0 0.46 1.6E-05 44.8 3.0 22 331-352 27-48 (192)
487 4aby_A DNA repair protein RECN 85.0 0.25 8.4E-06 52.9 1.2 32 325-356 55-86 (415)
488 2fv8_A H6, RHO-related GTP-bin 85.0 0.49 1.7E-05 45.2 3.2 24 330-353 25-48 (207)
489 2cjw_A GTP-binding protein GEM 85.0 0.48 1.6E-05 45.0 3.1 22 331-352 7-28 (192)
490 2qag_B Septin-6, protein NEDD5 85.0 0.36 1.2E-05 53.0 2.5 21 333-353 45-65 (427)
491 2o5v_A DNA replication and rep 85.0 0.54 1.8E-05 50.4 3.8 31 324-354 20-50 (359)
492 2qu8_A Putative nucleolar GTP- 84.9 0.48 1.6E-05 46.2 3.1 23 330-352 29-51 (228)
493 2o52_A RAS-related protein RAB 84.8 0.49 1.7E-05 45.0 3.1 22 331-352 26-47 (200)
494 2zj8_A DNA helicase, putative 84.7 1.9 6.4E-05 49.8 8.5 18 331-348 40-57 (720)
495 3cbq_A GTP-binding protein REM 84.7 0.38 1.3E-05 45.8 2.3 21 331-351 24-44 (195)
496 2hup_A RAS-related protein RAB 84.6 0.53 1.8E-05 44.9 3.2 23 331-353 30-52 (201)
497 3b60_A Lipid A export ATP-bind 84.6 0.43 1.5E-05 54.0 3.0 33 323-355 361-394 (582)
498 2j0v_A RAC-like GTP-binding pr 84.5 0.53 1.8E-05 44.9 3.2 23 331-353 10-32 (212)
499 2x77_A ADP-ribosylation factor 84.5 0.42 1.4E-05 44.6 2.4 21 331-351 23-43 (189)
500 3b5x_A Lipid A export ATP-bind 84.5 0.46 1.6E-05 53.8 3.2 35 321-355 359-394 (582)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=2.9e-42 Score=370.12 Aligned_cols=343 Identities=58% Similarity=0.969 Sum_probs=276.1
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
.+++.++.+.|++.|+||+.+|+.|..++..++++....... ..+..++.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-----------------~~~~~~~~~vll~GppGtGKT 65 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-----------------NGVELGKSNILLIGPTGSGKT 65 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCS-----------------SSCCCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccc-----------------ccccCCCCeEEEECCCCCCHH
Confidence 578999999999999999999999999999888765432211 122234589999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHH
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (686)
++|+++|+.++.+|+.++|+++..++|+|++....++.++..+.+.++.+.++||||||||++...+...+.+.+.++++
T Consensus 66 ~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~ 145 (363)
T 3hws_A 66 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG 145 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred HHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHH
Confidence 99999999999999999999998888999987888899998888777888899999999999998877666677777888
Q ss_pred HHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcccc-CCCCcCcccccccccCCCchh
Q 005637 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 425 vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~-~~igf~~~~~~~~~~~~~~~~ 503 (686)
+|+.||++|||..+.++..+.......+.+.+.++|++||++|++.++++++.++..+ ..+||....... ...
T Consensus 146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~------~~~ 219 (363)
T 3hws_A 146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SDK 219 (363)
T ss_dssp HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------CC
T ss_pred HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccc------ccc
Confidence 9999999999888887766666555556678899999999999999999999988776 789997664332 112
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHH
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~ 583 (686)
.....+.+.+.+.++.+++|.|+|++||+.++.|.|++.+++.+|+...++.+.++|.+.+...+..+.++++++++|++
T Consensus 220 ~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~ 299 (363)
T 3hws_A 220 ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 299 (363)
T ss_dssp SCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred hhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHH
Confidence 33567889999999999999999999999999999999999999999877788888888888888899999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc
Q 005637 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (686)
Q Consensus 584 ~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~ 634 (686)
++|+|++|+|+|+++|++++.+++++.++.. .++.+.||++.|....
T Consensus 300 ~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 300 KAMARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCS
T ss_pred hhcCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcC
Confidence 9999999999999999999999999998764 5678999999998765
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=2.6e-37 Score=332.76 Aligned_cols=349 Identities=50% Similarity=0.833 Sum_probs=259.6
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhh-------hcccccCCCCCCCCCCCCCccccccCceEEE
Q 005637 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNES-------SQKRSAGESSSCTTDGVDDDTVELEKSNILL 335 (686)
Q Consensus 263 ~~~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~-------~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL 335 (686)
...++++++.+.|++.|+||++||+.|..++.+|+++...+. +.+.+ |. .....+..++.++||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~--------p~-~~~~~~~~~~~~ill 77 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNV--------EL-EHLEEVELSKSNILL 77 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHH--------HH-HHHHHTTCCCCCEEE
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccc--------cc-ccccccccCCCCEEE
Confidence 356789999999999999999999999999999988866432 00000 00 000011223478999
Q ss_pred EccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccc
Q 005637 336 MGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (686)
Q Consensus 336 ~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~ 415 (686)
+||||||||++|+++|+.++.+|+.++++.+.+.+|+|.+.+..+..++....+.+..+.++||||||||++...+....
T Consensus 78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99999999999999999999999999999998788999887788888887777667778899999999999998766555
Q ss_pred cCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccc
Q 005637 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (686)
Q Consensus 416 ~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~ 495 (686)
...+..++++|+.||++||+..+.++..|.......+.+.++++|++||+++|+.+|++.+.+|.....+||..+.....
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 66778888899999999998888777777666666667789999999999999999999999888878889976653210
Q ss_pred ccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
....+++.+.+.++.+..|.|+|++|++.++.|++|+.+++.+|+...++.+.++|.+.+...+..+.+++
T Consensus 238 ---------~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 1um8_A 238 ---------EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEE 308 (376)
T ss_dssp ---------TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred ---------chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECH
Confidence 01234556677778888899999999999999999999999999997777788888887777788899999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~ 634 (686)
+++++|++++|++++|+|+|+++|++++..++++.+.. ....+.||++.+....
T Consensus 309 ~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 309 EAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCC
Confidence 99999999999989999999999999999999988764 2357889999988755
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=4.2e-36 Score=331.84 Aligned_cols=287 Identities=40% Similarity=0.655 Sum_probs=235.1
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
.++|+++.+.|+++|+||+++|+.|..++.++|+|...... .....++.++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~------------------~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP------------------LRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT------------------TTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc------------------cccccCCceEEEEcCCCCCHH
Confidence 47899999999999999999999999999999987532211 011234589999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcc------------------------------------
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~------------------------------------ 388 (686)
++|+++|+.++.+|+.++++.+...+|+|.+.+..++.++..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999998778999866777766654330
Q ss_pred ----------------------------------------hh--------------------------------------
Q 005637 389 ----------------------------------------YN-------------------------------------- 390 (686)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (686)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------hHhh-cCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCC
Q 005637 391 --------------------VAAA-QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (686)
Q Consensus 391 --------------------ve~a-~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~ 449 (686)
++.+ .++|+|+||||++....+ +.++|++++++|++||++|||..+.+
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 1123 678999999999987533 35789999999999999999887763
Q ss_pred CCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhc
Q 005637 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (686)
Q Consensus 450 ~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~ 529 (686)
+ ...+|+++++|||||+|.. .++.| ++|||++
T Consensus 294 ~--~~~~d~~~ilfI~~gaf~~-----------------------------------------~~~~d-----lipel~~ 325 (444)
T 1g41_A 294 K--HGMVKTDHILFIASGAFQV-----------------------------------------ARPSD-----LIPELQG 325 (444)
T ss_dssp T--TEEEECTTCEEEEEECCSS-----------------------------------------CCGGG-----SCHHHHT
T ss_pred c--cceecCCcEEEEecccccc-----------------------------------------CChhh-----cchHHhc
Confidence 1 1589999999999998641 01112 5699999
Q ss_pred ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcC-----CCCCChhHHHHHHHHHHH
Q 005637 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILM 604 (686)
Q Consensus 530 R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~-----~~~~GAR~Lr~vIe~il~ 604 (686)
||+.+|.|++|+.+|+.+|++++.+.+.+||.+.+...++.+.|+++|++.|++.++ ..+.|||.|+++|++++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999999888999999999999999999999999999999754 489999999999999999
Q ss_pred HHHhcCCCCcCCCCccceEEEchhccccc
Q 005637 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (686)
Q Consensus 605 ~al~e~~~~~~g~~~i~~vlVdee~v~~~ 633 (686)
+.++++++.. ...+.||.+.|...
T Consensus 406 ~~~~~~~~~~-----~~~~~i~~~~v~~~ 429 (444)
T 1g41_A 406 KISFSASDMN-----GQTVNIDAAYVADA 429 (444)
T ss_dssp HHHHHGGGCT-----TCEEEECHHHHHHH
T ss_pred HHHhhccccC-----CCeEEEeHHHHHHh
Confidence 9999998653 25789999887754
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=2e-27 Score=245.77 Aligned_cols=288 Identities=39% Similarity=0.650 Sum_probs=217.4
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHH
Q 005637 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (686)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (686)
..+|.++.+.|++.|+||+++++.|..++..++.+.......+ ....+.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------------------HEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------------------HHCCCCCEEEECCTTSSHH
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------------------ccCCCceEEEECCCCCCHH
Confidence 3688999999999999999999999999986654321110000 0012478999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhh-cCcEEEEccccccchhccccccCCCCchH
Q 005637 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 345 ~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a-~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
++|+++|+.++.+++.++|+.+...+|+|.+....+..++....+.+..+ .++||||||||++..... +.+.+..++
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~ 142 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSRE 142 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHH
Confidence 99999999999999999999998778999887778888887665444443 479999999999987643 234455566
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~ 503 (686)
.+++.|+++||+..+.. ..+ .++..+++||+++++.. .
T Consensus 143 ~~~~~Ll~~le~~~~~~--------~~~---~~~~~~~~~i~~~~~~~------------------~------------- 180 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVST--------KHG---MVKTDHILFIASGAFQV------------------A------------- 180 (310)
T ss_dssp HHHHHHHHHHHCCEEEE--------TTE---EEECTTCEEEEEECCSS------------------S-------------
T ss_pred HHHHHHHHHhcCCeEec--------ccc---cccCCcEEEEEcCCccc------------------C-------------
Confidence 78999999999654431 111 35667899998876320 0
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHH
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~ 583 (686)
. ...+.|+|++||+.++.|++++.+++.+|+++.++.+.+++.+.+...+..+.++++++++|++
T Consensus 181 ----------~-----~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 181 ----------R-----PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp ----------C-----GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred ----------C-----cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 0 0126689999999889999999999999999755556677777666677788999999999999
Q ss_pred hcCC-----CCCChhHHHHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc
Q 005637 584 KAIS-----KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (686)
Q Consensus 584 ~a~~-----~~~GAR~Lr~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~ 634 (686)
++|. ..+++|.|++++++++..+..+..... -..+.|+.+.+....
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~-----~~~~~i~~~~v~~~l 296 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN-----GQTVNIDAAYVADAL 296 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT-----TCEEEECHHHHHHHT
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc-----CCEEEEeeHHHHHHH
Confidence 8765 367899999999999988776654332 134567777665543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=2.4e-27 Score=277.42 Aligned_cols=273 Identities=21% Similarity=0.310 Sum_probs=200.5
Q ss_pred CCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccC
Q 005637 255 CWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (686)
Q Consensus 255 ~~~g~~~~~~~~t----~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~ 330 (686)
.|+++|....... ...+++.|.+.|+||+++++.|..++... ..+..++.+| .
T Consensus 432 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~------------~~g~~~~~~p-----------~ 488 (758)
T 1r6b_X 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA------------RAGLGHEHKP-----------V 488 (758)
T ss_dssp HHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH------------HTTCSCTTSC-----------S
T ss_pred HhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH------------hcccCCCCCC-----------c
Confidence 4666666554433 33478889999999999999999888521 1223233222 3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccc-----------cCcccccHHHHHHHHHhhcchhhHhhcCcEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gIL 399 (686)
.++||+||||||||++|+++|+.++.+|+.++|+++.+ +||+|++....+...+.. +.++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEE
Confidence 68999999999999999999999999999999998853 468887655555555544 346899
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhc
Q 005637 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (686)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r 479 (686)
|||||+++++. +++.|+++||.. .+++..+ ..++++|++||+|+|... +.+.
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~--------~~~~~~g--~~~~~~~~~iI~tsN~~~-~~~~--- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNG--------TLTDNNG--RKADFRNVVLVMTTNAGV-RETE--- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHS--------EEEETTT--EEEECTTEEEEEEECSSC-C------
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCc--------EEEcCCC--CEEecCCeEEEEecCcch-hhhh---
Confidence 99999999887 999999999933 2333333 378899999999998532 1111
Q ss_pred cccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHH
Q 005637 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (686)
Q Consensus 480 ~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq 559 (686)
+..+||...... . ...+.++..|.|+|++||+.+|.|++|+.+++.+|+...+.++.++
T Consensus 614 --~~~~g~~~~~~~---------~----------~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 614 --RKSIGLIHQDNS---------T----------DAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp -----------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred --hcccCccccchH---------H----------HHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 124555332100 0 1123344568899999999999999999999999999876665444
Q ss_pred HHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcC
Q 005637 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (686)
Q Consensus 560 ~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~ 610 (686)
+...++.+.++++++++|++++|+.++|+|+|+++|++.+.+.+.+.
T Consensus 673 ----~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 673 ----LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp ----HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred ----HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 44457788999999999999999999999999999999999877764
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.94 E-value=2.6e-26 Score=269.00 Aligned_cols=259 Identities=21% Similarity=0.330 Sum_probs=184.6
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccC
Q 005637 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (686)
Q Consensus 255 ~~~g~~~~~~~~----t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~ 330 (686)
.|+++|...... ....+.+.|.+.|+||+.+++.|..++... ..+..++.+| .
T Consensus 465 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~------------~~~~~~~~~p-----------~ 521 (758)
T 3pxi_A 465 SWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA------------RAGLKDPKRP-----------I 521 (758)
T ss_dssp TTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH------------TTTCSCTTSC-----------S
T ss_pred HHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH------------HcccCCCCCC-----------c
Confidence 566666654322 223478889999999999999999998621 1222222222 3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.++||+||||||||++|+++|+.+ +.+|+.++|+++.+. +... ...+...+.. ..++|||||||+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVRR-------KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHHH-------CSSSEEEEECGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHHh-------CCCeEEEEeCcccc
Confidence 589999999999999999999997 678999999998742 2222 2233333333 35689999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
++. +++.||++||+ |.+++..++ .+++.|+++|+|+|...-
T Consensus 592 ~~~--------------~~~~Ll~~le~--------g~~~~~~g~--~~~~~~~~iI~ttn~~~~--------------- 632 (758)
T 3pxi_A 592 HPD--------------VFNILLQVLED--------GRLTDSKGR--TVDFRNTILIMTSNVGAS--------------- 632 (758)
T ss_dssp CHH--------------HHHHHHHHHHH--------SBCC-------CCBCTTCEEEEEESSSTT---------------
T ss_pred CHH--------------HHHHHHHHhcc--------CeEEcCCCC--EeccCCeEEEEeCCCChh---------------
Confidence 887 99999999993 333343443 578899999999984210
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhc
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~ 567 (686)
. ...+ .+.++..|.|+|++||+.+|.|++|+.+++.+|+...+..+.+++ ...
T Consensus 633 -~----------------~~~~------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~----~~~ 685 (758)
T 3pxi_A 633 -E----------------KDKV------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL----KEQ 685 (758)
T ss_dssp -C----------------CHHH------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred -h----------------HHHH------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHH----HhC
Confidence 0 0001 122344588999999999999999999999999998776665554 444
Q ss_pred CCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 005637 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (686)
Q Consensus 568 gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~ 612 (686)
+..+.++++++++|++.+|+|.+|+|+|+++|++.+...+++...
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELL 730 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999887543
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=6.2e-26 Score=235.69 Aligned_cols=261 Identities=25% Similarity=0.354 Sum_probs=185.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHH
Q 005637 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (686)
Q Consensus 269 ~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (686)
.++.+.|.+.++||+.+++.|..++..... +..++.+ +..++||+||||||||++|+
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~------------~~~~~~~-----------~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARA------------GLKDPNR-----------PIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHH------------TCSCTTS-----------CSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhc------------CCCCCCC-----------CceEEEEECCCCcCHHHHHH
Confidence 458889999999999999999999863221 1112222 23689999999999999999
Q ss_pred HHHHhc---CCCEEEEecccccc-----------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 349 TLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 349 aLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
++|+.+ +.+++.++|+.+.. .+++|......+...+.. +.++||||||||++...
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-------CSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-------CCCeEEEEeChhhcCHH----
Confidence 999988 56799999987753 223343322233333332 34589999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
+|+.|+++|+...+. +..+ ..++.+++++|+|+|... + .+......
T Consensus 135 ----------~~~~Ll~~le~~~~~--------~~~~--~~~~~~~~iiI~ttn~~~-~-~i~~~~~~------------ 180 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLT--------DSHG--RTVDFRNTVIIMTSNLGS-P-LILEGLQK------------ 180 (311)
T ss_dssp ----------HHHHHHHHHHHSEEE--------CTTS--CEEECTTEEEEEEESTTH-H-HHHTTTTS------------
T ss_pred ----------HHHHHHHHHhcCEEE--------cCCC--CEEECCCcEEEEecccCH-H-HHHhhhcc------------
Confidence 999999999943332 2222 378899999999998531 1 11111000
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
..... .+.+.+. +.+...|.|+|++||+.++.|.|++.+++.+|++..+..+.+++ ...+..+.++
T Consensus 181 ----~~~~~----~l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~----~~~~~~~~~~ 246 (311)
T 4fcw_A 181 ----GWPYE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARL----AEKRISLELT 246 (311)
T ss_dssp ----CCCSS----THHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHH----HTTTCEEEEC
T ss_pred ----cccHH----HHHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH----HhCCcEEEeC
Confidence 00000 1111111 12344688999999999999999999999999998666655543 3356788999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
++++++|++++|++++|+|+|+++|++++..++.+..
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999888899999999999999998887643
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.94 E-value=6.9e-26 Score=268.92 Aligned_cols=276 Identities=24% Similarity=0.362 Sum_probs=194.6
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005637 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (686)
Q Consensus 254 ~~~~g~~~~~~~~t~~----el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~ 329 (686)
..|+++|..+...... .+.+.|.+.|+||+.+++.|..++... ..+..++.+|
T Consensus 531 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~------------~~g~~~~~~p----------- 587 (854)
T 1qvr_A 531 SRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA------------RAGLKDPNRP----------- 587 (854)
T ss_dssp HTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH------------GGGCSCSSSC-----------
T ss_pred HHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH------------hcccCCCCCC-----------
Confidence 3577776554433333 256677788999999999999988511 1222333332
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc-----------cCcccccHHHHHHHHHhhcchhhHhhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~ve~a~ 395 (686)
..++||+||||||||++|++||+.+ +.+|+.++|+++.+ ++|+|++....+...+.. ..
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-------~~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RP 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-------CC
Confidence 3689999999999999999999998 77999999998753 356676643445444443 34
Q ss_pred CcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
++|||||||+++++. +++.||++|| +|.+++..++ .+|++|+++|+|+|... +.+
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~--------~~~~~~~~g~--~vd~~~~iiI~tsn~~~-~~~ 715 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILD--------DGRLTDSHGR--TVDFRNTVIILTSNLGS-PLI 715 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHT--------TTEECCSSSC--CEECTTEEEEEECCTTH-HHH
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhc--------cCceECCCCC--EeccCCeEEEEecCcCh-HHH
Confidence 589999999999887 9999999999 3334444443 78999999999998531 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
.... +++ ... ..+.+.+. +.++..|.|+|++|++.++.|.|++.+++..|+...+..
T Consensus 716 ~~~~------~~~-----------~~~----~~l~~~v~--~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 716 LEGL------QKG-----------WPY----ERIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HHHH------HTT-----------CCH----HHHHHHHH--HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred hhhc------ccc-----------cch----HHHHHHHH--HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 1100 000 000 11111111 224567999999999999999999999999999987766
Q ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 556 L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
+.+++ ...++.+.++++++++|++++|++.+|+|+|+++|++.+..++.+..
T Consensus 773 ~~~~~----~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 773 LRARL----AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp HHHHH----HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred HHHHH----HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 65543 44466789999999999999999999999999999999998887653
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-23 Score=229.07 Aligned_cols=221 Identities=22% Similarity=0.294 Sum_probs=171.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.++|..+.++.....+.. ..+++++||+||||||||++|+++|++++.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-------------------i~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLG-------------------IAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-------------------CCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCC-------------------CCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 489999999999999987666543322110 0134899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..|+||||||||.+...|...+.+.+...+.+.+.||..|||..
T Consensus 210 f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 210 FIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp EEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 9999999998 7899998 7889999988764 57999999999999998776655555556678889999998531
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 284 -------------------~~~~V~vIaATNrpd---------------------------------------------- 298 (405)
T 4b4t_J 284 -------------------TSKNIKIIMATNRLD---------------------------------------------- 298 (405)
T ss_dssp -------------------CCCCEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCeEEEeccCChh----------------------------------------------
Confidence 124588899988432
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GAR~ 594 (686)
.+.|+|+. |||..|.++.++.++..+|++..+. .+.++++ -++.|++. ..++.+..
T Consensus 299 ----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~---------------~~~l~~dvdl~~lA~~--t~G~SGAD 357 (405)
T 4b4t_J 299 ----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR---------------KMNLTRGINLRKVAEK--MNGCSGAD 357 (405)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT---------------TSBCCSSCCHHHHHHH--CCSCCHHH
T ss_pred ----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc---------------CCCCCccCCHHHHHHH--CCCCCHHH
Confidence 14577775 9999999999999999999975321 1122211 26778875 56777899
Q ss_pred HHHHHHHHHHHHHhc
Q 005637 595 LRSLLENILMDAMYE 609 (686)
Q Consensus 595 Lr~vIe~il~~al~e 609 (686)
|++++......++.+
T Consensus 358 i~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 358 VKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999888777654
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-22 Score=223.10 Aligned_cols=221 Identities=20% Similarity=0.255 Sum_probs=169.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.+.|..+.++........ ..++.++||+||||||||++|+++|.+++.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-------------------i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMG-------------------IKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-------------------CCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCC-------------------CCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 389999999999999986655322211100 0124899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..|+||||||||.+...|...+.+.+.....+...||..|||..
T Consensus 244 fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 244 FLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp EEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 9999999998 6899998 7889999988754 57899999999999998876655555555567788888888421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 318 -------------------~~~~ViVIaATNrpd---------------------------------------------- 332 (437)
T 4b4t_I 318 -------------------DRGDVKVIMATNKIE---------------------------------------------- 332 (437)
T ss_dssp -------------------CSSSEEEEEEESCST----------------------------------------------
T ss_pred -------------------CCCCEEEEEeCCChh----------------------------------------------
Confidence 234688999988432
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GAR~ 594 (686)
.+.|+|+. |||..|.++.++.++..+|++..+. .+.++++ -++.|++. ..++..+.
T Consensus 333 ----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~---------------~~~l~~dvdl~~LA~~--T~GfSGAD 391 (437)
T 4b4t_I 333 ----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS---------------KMNLSEDVNLETLVTT--KDDLSGAD 391 (437)
T ss_dssp ----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT---------------TSCBCSCCCHHHHHHH--CCSCCHHH
T ss_pred ----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc---------------CCCCCCcCCHHHHHHh--CCCCCHHH
Confidence 14577875 9999999999999999999975321 1122222 26777875 56777899
Q ss_pred HHHHHHHHHHHHHhc
Q 005637 595 LRSLLENILMDAMYE 609 (686)
Q Consensus 595 Lr~vIe~il~~al~e 609 (686)
|++++..+...++.+
T Consensus 392 I~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 392 IQAMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999888877754
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-22 Score=223.58 Aligned_cols=222 Identities=22% Similarity=0.259 Sum_probs=168.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.+.|..+.++.....+.. ..+++++||+||||||||++|+++|..++.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g-------------------~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMG-------------------IRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-------------------CCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 389999999999999987665432221110 0125899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..|+||||||||.+...|...+.+++.....+...||..|+|..
T Consensus 243 f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 243 FLKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp EEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred EEEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 9999999998 7899998 7889999987654 57999999999999988766554444444557788899998521
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 317 -------------------~~~~ViVIaaTNrp~---------------------------------------------- 331 (434)
T 4b4t_M 317 -------------------SDDRVKVLAATNRVD---------------------------------------------- 331 (434)
T ss_dssp -------------------SSCSSEEEEECSSCC----------------------------------------------
T ss_pred -------------------CCCCEEEEEeCCCch----------------------------------------------
Confidence 123588888988432
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+|+. |||..|.++.++.++..+|++..+..+ ...-.++ ++.|++. ..++.++.|
T Consensus 332 ----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-----------~~~~dvd---l~~lA~~--t~G~sGADi 391 (434)
T 4b4t_M 332 ----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM-----------TTDDDIN---WQELARS--TDEFNGAQL 391 (434)
T ss_dssp ----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS-----------CBCSCCC---HHHHHHH--CSSCCHHHH
T ss_pred ----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC-----------CCCCcCC---HHHHHHh--CCCCCHHHH
Confidence 14577865 999999999999999999997533211 1111222 5677775 566778999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
++++......++.+
T Consensus 392 ~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 392 KAVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999887777654
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-22 Score=220.92 Aligned_cols=222 Identities=21% Similarity=0.244 Sum_probs=169.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.++|..+.++.....+.. ..+++++||+||||||||++|+++|+.++.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g-------------------~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVG-------------------IKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCC-------------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 389999999999999987666433222110 0135899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..|+||||||||.+...|...+.+.+.....+.+.||..|||..
T Consensus 243 ~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 243 FIFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp EEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred EEEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 9999999998 6899998 7889999987754 57999999999999998766555555555667889999999521
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 317 -------------------~~~~vivI~ATNrp~---------------------------------------------- 331 (437)
T 4b4t_L 317 -------------------NLGQTKIIMATNRPD---------------------------------------------- 331 (437)
T ss_dssp -------------------CTTSSEEEEEESSTT----------------------------------------------
T ss_pred -------------------CCCCeEEEEecCCch----------------------------------------------
Confidence 124588898888432
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+|+ +|||..|.++.++.++..+|++..+..+ ...-.++ ++.|++. +.++.++.|
T Consensus 332 ----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-----------~~~~d~d---l~~lA~~--t~G~sGADi 391 (437)
T 4b4t_L 332 ----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV-----------KKTGEFD---FEAAVKM--SDGFNGADI 391 (437)
T ss_dssp ----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS-----------CBCSCCC---HHHHHHT--CCSCCHHHH
T ss_pred ----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC-----------CCCcccC---HHHHHHh--CCCCCHHHH
Confidence 1446775 4699999999999999999997532211 1111222 5777774 667778999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
++++......++.+
T Consensus 392 ~~l~~eA~~~air~ 405 (437)
T 4b4t_L 392 RNCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999887777654
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-22 Score=221.34 Aligned_cols=222 Identities=20% Similarity=0.217 Sum_probs=168.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.+.|..+.++.....+.. ..+++++||+||||||||++|+++|++++.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-------------------i~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLG-------------------IDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-------------------CCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCC-------------------CCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 489999999999999986655432222110 0135899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|++ +..++.+|..+.. ..++||||||+|.+...|...+.+.+.....+...||..|+|..
T Consensus 271 fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 271 FIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp EEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred eEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999998 6899998 7889999988754 57899999999999998776554545455567788888888421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 345 -------------------~~~~ViVIaATNrpd---------------------------------------------- 359 (467)
T 4b4t_H 345 -------------------PRGNIKVMFATNRPN---------------------------------------------- 359 (467)
T ss_dssp -------------------CTTTEEEEEECSCTT----------------------------------------------
T ss_pred -------------------CCCcEEEEeCCCCcc----------------------------------------------
Confidence 234588899988432
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+|+. |||..|.|+.++.++..+|++..+.. ....-.++ ++.|++. ..++.++.|
T Consensus 360 ----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-----------~~l~~dvd---l~~LA~~--T~GfSGADI 419 (467)
T 4b4t_H 360 ----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-----------MSVERGIR---WELISRL--CPNSTGAEL 419 (467)
T ss_dssp ----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-----------SCBCSSCC---HHHHHHH--CCSCCHHHH
T ss_pred ----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-----------CCCCCCCC---HHHHHHH--CCCCCHHHH
Confidence 14467765 99999999999999999999753211 11111222 5677775 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
++++......++.+
T Consensus 420 ~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 420 RSVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999887777654
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.7e-22 Score=218.43 Aligned_cols=222 Identities=18% Similarity=0.276 Sum_probs=168.3
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
+.|.|++++|+.|.+.|..+.++....... | ..+++++||+||||||||++|+++|+.++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~----g---------------~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQI----G---------------IDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHH----C---------------CCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhC----C---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 348999999999999998666543222111 0 012489999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
+|+.++++++. ..|+|+. +..++.+|..+.. ..|+||||||+|.+...|.....+.+.....+.+.||..|||.
T Consensus 233 ~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 233 AFIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp EEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred CeEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 99999999998 6899998 7889999987753 5789999999999999876655555555567899999999952
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. ...++++|+|+|..+
T Consensus 307 ~-------------------~~~~v~vI~aTN~~~--------------------------------------------- 322 (428)
T 4b4t_K 307 D-------------------QSTNVKVIMATNRAD--------------------------------------------- 322 (428)
T ss_dssp C-------------------SSCSEEEEEEESCSS---------------------------------------------
T ss_pred C-------------------CCCCEEEEEecCChh---------------------------------------------
Confidence 1 234588999988432
Q ss_pred HHHhcCCChhhhc--ccCeEEEcc-CcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCCh
Q 005637 517 DLIAYGLIPEFVG--RFPVLVSLL-ALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (686)
Q Consensus 517 dl~~~~f~PELl~--R~~~iI~f~-pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GA 592 (686)
.+.|+|+. |||..|.|+ ..+.++...|++..+. .+.++++ -++.|++. ..++.+
T Consensus 323 -----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~---------------~~~l~~~~dl~~lA~~--t~G~sg 380 (428)
T 4b4t_K 323 -----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS---------------KMSLAPEADLDSLIIR--NDSLSG 380 (428)
T ss_dssp -----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH---------------SSCBCTTCCHHHHHHH--TTTCCH
T ss_pred -----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc---------------CCCCCcccCHHHHHHH--CCCCCH
Confidence 14577765 999999997 5678888888865321 1122222 26777875 567778
Q ss_pred hHHHHHHHHHHHHHHhc
Q 005637 593 RGLRSLLENILMDAMYE 609 (686)
Q Consensus 593 R~Lr~vIe~il~~al~e 609 (686)
+.|++++..+...++.+
T Consensus 381 adi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 381 AVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 99999999888777754
No 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.7e-21 Score=202.39 Aligned_cols=236 Identities=18% Similarity=0.266 Sum_probs=168.8
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
....++.+.|++.|+|++.+|+.|.+.+...... ... ...+.... .+..++||+||||||||+
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~---~~~--~~~g~~~~------------~~~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVE---RAR--QKLGLAHE------------TPTLHMSFTGNPGTGKTT 82 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH---HHH--HHHTCCSS------------CCCCEEEEEECTTSSHHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhH---HHH--HHcCCCCC------------CCCceEEEECCCCCCHHH
Confidence 3456688889988999999999999888633211 000 01111111 123689999999999999
Q ss_pred HHHHHHHhc-------CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCC
Q 005637 346 LAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (686)
Q Consensus 346 LAraLA~~l-------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (686)
+|+++|+.+ ..+++.+++.++. ..++|.. ...+..++.. +.++||||||+|.+...+..
T Consensus 83 la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~----- 148 (309)
T 3syl_A 83 VALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE----- 148 (309)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-------
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc-----
Confidence 999999888 3489999999887 5677876 4445555544 35689999999999754321
Q ss_pred CCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005637 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (686)
Q Consensus 419 d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~ 498 (686)
+.....+++.|+.+|+.. ..++++|++++...++...
T Consensus 149 ~~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~---------------------- 185 (309)
T 3syl_A 149 RDYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF---------------------- 185 (309)
T ss_dssp -CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH----------------------
T ss_pred ccccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH----------------------
Confidence 223445999999999821 1357888887733211111
Q ss_pred CCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHH
Q 005637 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (686)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl 578 (686)
.+.|+|++|++.++.|++++.+++.+|++..+... .+.++++++
T Consensus 186 -----------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~-------------~~~~~~~~~ 229 (309)
T 3syl_A 186 -----------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ-------------NYQMTPEAE 229 (309)
T ss_dssp -----------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT-------------TCEECHHHH
T ss_pred -----------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc-------------CCCCCHHHH
Confidence 12388999999999999999999999998743321 567999999
Q ss_pred HHHHHhcC-----CCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 579 RLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 579 ~~La~~a~-----~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
+.++++.- .+..++|.|++++++++..+...+.
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99998622 5666699999999999987665543
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=1.8e-21 Score=220.49 Aligned_cols=243 Identities=21% Similarity=0.258 Sum_probs=164.4
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHH
Q 005637 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (686)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (686)
....++.+.|++.++|++++++.+.+.+..... ....++.++||+||||||||+
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~--------------------------~~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKL--------------------------TKSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHH--------------------------SSSCCSCEEEEESSSSSSHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh--------------------------cccCCCCEEEEECCCCCCHHH
Confidence 344566778888999999999999876642111 011134789999999999999
Q ss_pred HHHHHHHhcCCCEEEEecccccc--------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC
Q 005637 346 LAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (686)
Q Consensus 346 LAraLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~ 417 (686)
+|+++|+.++.++..+++..+.. ..|+|... ..+...+..+. ..++||||||||++...+..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~-~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~---- 193 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP-GRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG---- 193 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC---------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc-hHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc----
Confidence 99999999999999999987542 13555542 23333444332 24569999999999876321
Q ss_pred CCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccccccc
Q 005637 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (686)
Q Consensus 418 ~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~ 497 (686)
..++.||++||+.. .......+....++..+++||+|+|..+
T Consensus 194 ------~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------------------- 235 (543)
T 3m6a_A 194 ------DPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLA-------------------------- 235 (543)
T ss_dssp ----------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTT--------------------------
T ss_pred ------CHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccc--------------------------
Confidence 17899999998321 1111222233467778999999988321
Q ss_pred CCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH
Q 005637 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (686)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA 577 (686)
.+.|+|++|++ ++.|++++.++..+|+...+ .+++.+........+.+++++
T Consensus 236 ------------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 236 ------------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIKEHGLKKSNLQLRDQA 287 (543)
T ss_dssp ------------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHHHTTCCGGGCEECHHH
T ss_pred ------------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHHHcCCCcccccCCHHH
Confidence 26689999996 78999999999999998754 333333222223367899999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 578 LRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 578 l~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
+..|++. |+|..|+|+|++.|++++..+..++.
T Consensus 288 l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 288 ILDIIRY-YTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp HHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CChhhchhHHHHHHHHHHHHHHHHHH
Confidence 9999984 88999999999999999988776543
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.3e-20 Score=195.87 Aligned_cols=221 Identities=21% Similarity=0.293 Sum_probs=167.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc-CC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-~~ 356 (686)
.|+|++.+|+.|.+++..+.+...... ....++.++||+||||||||++|+++|+.+ +.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 72 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 72 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSC--------------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHh--------------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCC
Confidence 389999999999999975554321110 001234799999999999999999999999 88
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .....+.+++.||..|+|.
T Consensus 73 ~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 73 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp EEEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCS
T ss_pred cEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcc
Confidence 99999999987 5688887 677888887654 2578999999999998765432 1223445889999999842
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. ....++++|+++|..+
T Consensus 144 ~------------------~~~~~v~vI~atn~~~--------------------------------------------- 160 (322)
T 1xwi_A 144 G------------------VDNDGILVLGATNIPW--------------------------------------------- 160 (322)
T ss_dssp S------------------SCCTTEEEEEEESCTT---------------------------------------------
T ss_pred c------------------ccCCCEEEEEecCCcc---------------------------------------------
Confidence 1 1234588888877321
Q ss_pred HHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 517 dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.+++||+..+.++.++.++..+|++..+. .....+++..++.|++. ..++..+.|+
T Consensus 161 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------------~~~~~l~~~~l~~la~~--t~G~sgadl~ 220 (322)
T 1xwi_A 161 -----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG-------------TTQNSLTEADFRELGRK--TDGYSGADIS 220 (322)
T ss_dssp -----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------------TCCBCCCHHHHHHHHHT--CTTCCHHHHH
T ss_pred -----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh-------------cCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 145778899999999999999999999875221 22456789999999985 5677779999
Q ss_pred HHHHHHHHHHHhcC
Q 005637 597 SLLENILMDAMYEI 610 (686)
Q Consensus 597 ~vIe~il~~al~e~ 610 (686)
.+++..+..++.+.
T Consensus 221 ~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 221 IIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=2.5e-20 Score=196.98 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=164.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+|++.+|+.|.+++..+........ ....++.++||+||||||||++|+++|+.++.+|
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~--------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFK--------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCC--------------------TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHh--------------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 79999999999999875543211100 0112347999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++++++. ..|+|.. +..++.+|..+.. ..++||||||||.+...+... .....+.+++.|+..|++..
T Consensus 80 ~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~- 149 (322)
T 3eie_A 80 FSVSSSDLV-SKWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG- 149 (322)
T ss_dssp EEEEHHHHH-TTTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGG-
T ss_pred EEEchHHHh-hcccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcccc-
Confidence 999999987 5688876 6777888776543 467999999999998865432 22234558999999998421
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
-...++++|+++|..+
T Consensus 150 -----------------~~~~~v~vi~atn~~~----------------------------------------------- 165 (322)
T 3eie_A 150 -----------------NDSQGVLVLGATNIPW----------------------------------------------- 165 (322)
T ss_dssp -----------------TSCCCEEEEEEESCGG-----------------------------------------------
T ss_pred -----------------ccCCceEEEEecCChh-----------------------------------------------
Confidence 0223588888877321
Q ss_pred HhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHH
Q 005637 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (686)
Q Consensus 519 ~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~v 598 (686)
.+.|.+++||+..+.++.++.++..+|++..+ ......++++.++.|++. ..++..+.|+++
T Consensus 166 ---~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-------------~~~~~~~~~~~l~~la~~--t~g~sg~di~~l 227 (322)
T 3eie_A 166 ---QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------GDTPCVLTKEDYRTLGAM--TEGYSGSDIAVV 227 (322)
T ss_dssp ---GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------------TTCCCCCCHHHHHHHHHT--TTTCCHHHHHHH
T ss_pred ---hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-------------ccCCCCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 14578899999999999999999999987522 123556789999999985 566778999999
Q ss_pred HHHHHHHHHhcC
Q 005637 599 LENILMDAMYEI 610 (686)
Q Consensus 599 Ie~il~~al~e~ 610 (686)
++.....++.+.
T Consensus 228 ~~~a~~~a~r~~ 239 (322)
T 3eie_A 228 VKDALMQPIRKI 239 (322)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998877777654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=7.2e-20 Score=196.63 Aligned_cols=221 Identities=21% Similarity=0.278 Sum_probs=160.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+|+.|.+++..+......... ...++.++||+||||||||++|+++|+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~--------------------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKG--------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCS--------------------SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhc--------------------CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999998754332111100 01234789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .....+.+++.||..|++..
T Consensus 112 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 112 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC
T ss_pred EEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhccc
Confidence 9999999887 5688876 667777776643 2468999999999998765431 12233458899999998421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
-...+++||+++|..+
T Consensus 183 ------------------~~~~~v~vI~atn~~~---------------------------------------------- 198 (355)
T 2qp9_X 183 ------------------NDSQGVLVLGATNIPW---------------------------------------------- 198 (355)
T ss_dssp ---------------------CCEEEEEEESCGG----------------------------------------------
T ss_pred ------------------ccCCCeEEEeecCCcc----------------------------------------------
Confidence 1234588888877321
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.|.+++||+..+.++.++.++..+|++..+. .....+++..++.|++. ..++..|.|++
T Consensus 199 ----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------------~~~~~~~~~~l~~la~~--t~G~sg~dl~~ 259 (355)
T 2qp9_X 199 ----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG-------------DTPSVLTKEDYRTLGAM--TEGYSGSDIAV 259 (355)
T ss_dssp ----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------------TSCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh-------------hCCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 144778899999999999999999999875221 22456789999999996 45667899999
Q ss_pred HHHHHHHHHHhcC
Q 005637 598 LLENILMDAMYEI 610 (686)
Q Consensus 598 vIe~il~~al~e~ 610 (686)
++++++..++.+.
T Consensus 260 l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 260 VVKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.83 E-value=1.3e-19 Score=185.18 Aligned_cols=221 Identities=18% Similarity=0.278 Sum_probs=145.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC---
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (686)
++|++.+++.+...+.... ..+.++||+||||||||++|+++++.+.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~ 57 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLA------------------------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (265)
T ss_dssp --CCCHHHHHHHHHHHHHT------------------------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTT
T ss_pred ceeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccC
Confidence 6899999998887774110 0126899999999999999999999874
Q ss_pred CCEEEEeccccccc----CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005637 356 VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (686)
Q Consensus 356 ~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (686)
.+|+.++|+.+... ..+|... ...........+.++.+.+++||||||+.+... +|+.|++
T Consensus 58 ~~~~~v~~~~~~~~~~~~~l~g~~~-~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~ 122 (265)
T 2bjv_A 58 GPFISLNCAALNENLLDSELFGHEA-GAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLR 122 (265)
T ss_dssp SCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHH
T ss_pred CCeEEEecCCCChhHHHHHhcCCcc-cccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHH
Confidence 68999999887421 1111110 000001111223455567899999999999887 9999999
Q ss_pred HHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHh
Q 005637 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (686)
Q Consensus 432 lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (686)
+|+...+. ..| + . .....++.+|+|+|. ++++.+.
T Consensus 123 ~l~~~~~~--~~g------~-~-~~~~~~~~iI~atn~-~~~~~~~---------------------------------- 157 (265)
T 2bjv_A 123 VIEYGELE--RVG------G-S-QPLQVNVRLVCATNA-DLPAMVN---------------------------------- 157 (265)
T ss_dssp HHHHCEEC--CCC------C----CEECCCEEEEEESS-CHHHHHH----------------------------------
T ss_pred HHHhCCee--cCC------C-c-ccccCCeEEEEecCc-CHHHHHH----------------------------------
Confidence 99833221 011 1 0 122346778888873 2222221
Q ss_pred hcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHHHHHHHhhcCCcc--ccCHHHHHHHHHhcC
Q 005637 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL--HFTENALRLIAKKAI 586 (686)
Q Consensus 512 ~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq~~~~~~~~gv~l--~~s~eAl~~La~~a~ 586 (686)
...|.++|++|+. ..+.++++++ +++..++...+..+.++ .+... .++++++++|..+
T Consensus 158 --------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~-------~~~~~~~~~~~~a~~~L~~~-- 220 (265)
T 2bjv_A 158 --------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE-------IKLPLFPGFTERARETLLNY-- 220 (265)
T ss_dssp --------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCSSCCCBCHHHHHHHHHS--
T ss_pred --------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH-------hCCCcccCcCHHHHHHHHhC--
Confidence 1237789999996 5689999987 78888877654443322 23333 7999999999985
Q ss_pred CCCCChhHHHHHHHHHHHHH
Q 005637 587 SKNTGARGLRSLLENILMDA 606 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~a 606 (686)
.|..++|+|++++++++..+
T Consensus 221 ~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 56677899999999987643
No 21
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.82 E-value=2.9e-20 Score=195.80 Aligned_cols=223 Identities=19% Similarity=0.298 Sum_probs=151.5
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
+.++|++.+.+.+...+. +. .....++||+||||||||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~----~~--------------------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIA----MV--------------------------APSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHH----HH--------------------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHH----HH--------------------------hCCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 347999999999888875 10 0113689999999999999999999865
Q ss_pred -CCCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 355 -NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 355 -~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
+.||+.++|+.+.. +..+|+..+. +........+.++.+.+++||||||+.+... +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~~g~-~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCCSSC-CC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCccccc-cCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 57899999987742 1111211000 0000011234456677899999999999887 99999
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
+++|+...+. ..| ... ....++.+|+++|. ++++.+.+.
T Consensus 117 l~~l~~~~~~--~~g-----~~~---~~~~~~riI~atn~-~l~~~v~~g------------------------------ 155 (304)
T 1ojl_A 117 LRAIQEREVQ--RVG-----SNQ---TISVDVRLIAATHR-DLAEEVSAG------------------------------ 155 (304)
T ss_dssp HHHHHSSBCC--BTT-----BCC---CCBCCCEEEEEESS-CHHHHHHHT------------------------------
T ss_pred HHHHhcCEee--ecC-----Ccc---cccCCeEEEEecCc-cHHHHHHhC------------------------------
Confidence 9999843321 011 111 12235778888873 344444322
Q ss_pred HhhcCchHHHhcCCChhhhcccC-eEEEccCcC--hHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcC
Q 005637 510 METVESSDLIAYGLIPEFVGRFP-VLVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs--~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~ 586 (686)
.|.++|..||. ..+.++||. .+|+..++...+..+..++. .....+++++++.|..+
T Consensus 156 ------------~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~------~~~~~~s~~a~~~L~~~-- 215 (304)
T 1ojl_A 156 ------------RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNR------KVVKGFTPQAMDLLIHY-- 215 (304)
T ss_dssp ------------SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT------CCCCCBCHHHHHHHHHC--
T ss_pred ------------CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc------cCccCCCHHHHHHHHcC--
Confidence 37788999995 448899999 68898888876554433321 12457999999999985
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 005637 587 SKNTGARGLRSLLENILMD 605 (686)
Q Consensus 587 ~~~~GAR~Lr~vIe~il~~ 605 (686)
.|..++|+|++++++++..
T Consensus 216 ~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5677789999999998764
No 22
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.81 E-value=1.5e-20 Score=220.79 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=143.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.+++..+.++.....+. + ..++.++||+||||||||++|+++|.+++.+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~-------g------------~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKF-------G------------MTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSS-------C------------CCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhc-------C------------CCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 37999999999999987544432111100 0 1234789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. +.|+|++ +..++.+|..+.. ..||||||||||.+...|+....+.+...+++.+.||..|||..
T Consensus 539 f~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 539 FISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp EEECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred eEEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 9999999998 7899999 7889999998753 57899999999999998764332333334469999999999531
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 613 -------------------~~~~V~vi~aTN~p~---------------------------------------------- 627 (806)
T 3cf2_A 613 -------------------TKKNVFIIGATNRPD---------------------------------------------- 627 (806)
T ss_dssp -------------------SSSSEEEECC-CCSS----------------------------------------------
T ss_pred -------------------CCCCEEEEEeCCCch----------------------------------------------
Confidence 123588888888432
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|+++. |||.+|.++.++.++..+|++..+. +..+. ++.-++.|++. ..++....|
T Consensus 628 ----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~-------------~~~~~-~~~dl~~la~~--t~g~SGadi 687 (806)
T 3cf2_A 628 ----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-------------KSPVA-KDVDLEFLAKM--TNGFSGADL 687 (806)
T ss_dssp ----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS-------------CC--C-CC------------------CH
T ss_pred ----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc-------------CCCCC-CCCCHHHHHHh--CCCCCHHHH
Confidence 14477776 9999999999999999999986321 11111 12225667764 455666889
Q ss_pred HHHHHHHHHHHHhcCC
Q 005637 596 RSLLENILMDAMYEIP 611 (686)
Q Consensus 596 r~vIe~il~~al~e~~ 611 (686)
.++++.....++.+..
T Consensus 688 ~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 688 TEICQRACKLAIRESI 703 (806)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888876543
No 23
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=3e-19 Score=187.13 Aligned_cols=222 Identities=22% Similarity=0.267 Sum_probs=154.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+|++.+|+.|.+++..+.......... + ..++.++||+||||||||++|+++|+.++.+|
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~----~---------------~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~ 77 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKF----G---------------MTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHH----C---------------CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHc----C---------------CCCCceEEEECCCCcCHHHHHHHHHHHhCCCE
Confidence 8999999999999997544322111110 0 01237899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++++++. ..|+|.. +..+..+|..+.. ..++||||||||.+...++............+++.||..|++..
T Consensus 78 i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~- 150 (301)
T 3cf0_A 78 ISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150 (301)
T ss_dssp EEECHHHHH-HHHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-
T ss_pred EEEEhHHHH-hhhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-
Confidence 999999886 4567766 4556677766532 46799999999999987653222212223458999999998421
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
...++++|+++|..+
T Consensus 151 ------------------~~~~v~vi~atn~~~----------------------------------------------- 165 (301)
T 3cf0_A 151 ------------------TKKNVFIIGATNRPD----------------------------------------------- 165 (301)
T ss_dssp ------------------TTSSEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCCcc-----------------------------------------------
Confidence 124588888887321
Q ss_pred HhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 519 ~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.+++ ||+.++.++.++.++..+|++..+. ..+....++ ++.|+.. ..++..++|+
T Consensus 166 ---~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~-----------~~~~~~~~~---~~~la~~--~~g~sg~dl~ 226 (301)
T 3cf0_A 166 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-----------KSPVAKDVD---LEFLAKM--TNGFSGADLT 226 (301)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT-----------TSCBCSSCC---HHHHHHT--CSSCCHHHHH
T ss_pred ---ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc-----------cCCCCccch---HHHHHHH--cCCCCHHHHH
Confidence 13356666 9999999999999999998865321 112222233 4556664 3344456999
Q ss_pred HHHHHHHHHHHhcC
Q 005637 597 SLLENILMDAMYEI 610 (686)
Q Consensus 597 ~vIe~il~~al~e~ 610 (686)
+++++++..++.+.
T Consensus 227 ~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 227 EICQRACKLAIRES 240 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=3.9e-19 Score=196.60 Aligned_cols=221 Identities=20% Similarity=0.291 Sum_probs=157.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc-CC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-~~ 356 (686)
.|+|++.+|+.|.+++..+.+...... ....++.++||+||||||||++|+++|+.+ +.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTS--------------------GGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhh--------------------ccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999999864443211100 011234899999999999999999999999 88
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .......+++.||..|++.
T Consensus 195 ~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 195 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp EEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCS
T ss_pred CEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCc
Confidence 99999999887 5677776 456677776543 2468999999999998764432 1223445889999998842
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. ....+++||+|+|..+
T Consensus 266 ~------------------~~~~~v~vI~atn~~~--------------------------------------------- 282 (444)
T 2zan_A 266 G------------------VDNDGILVLGATNIPW--------------------------------------------- 282 (444)
T ss_dssp S------------------CCCSSCEEEEEESCGG---------------------------------------------
T ss_pred c------------------cCCCCEEEEecCCCcc---------------------------------------------
Confidence 1 1234588888887321
Q ss_pred HHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHH
Q 005637 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (686)
Q Consensus 517 dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (686)
.+.|.+++||+.++.++.++.++..+|++..+. .....+++..++.|++. ..++..+.|+
T Consensus 283 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------------~~~~~l~~~~l~~la~~--t~G~sgadl~ 342 (444)
T 2zan_A 283 -----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG-------------STQNSLTEADFQELGRK--TDGYSGADIS 342 (444)
T ss_dssp -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------------TSCEECCHHHHHHHHHH--TTTCCHHHHH
T ss_pred -----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh-------------cCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 145789999999999999999999998875221 22456789999999996 5677789999
Q ss_pred HHHHHHHHHHHhcC
Q 005637 597 SLLENILMDAMYEI 610 (686)
Q Consensus 597 ~vIe~il~~al~e~ 610 (686)
.+++..+..++.+.
T Consensus 343 ~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 343 IIVRDALMQPVRKV 356 (444)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887654
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=187.61 Aligned_cols=223 Identities=23% Similarity=0.306 Sum_probs=154.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+++.|.+++..+..+... ...+..++.++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPEL--------------------FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHH--------------------hcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3899999999999998644332100 01112234799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++|+++. ..|+|.. ...+..++..+.. ..++||||||||.+...+.. +.......+++.|+..|+|..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999987 4677776 5666777765432 46789999999999776432 122234568999999998432
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
. ....+++||+++|..+
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 263 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQ---------------------------------------------- 263 (389)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCCch----------------------------------------------
Confidence 1 1124588888877321
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.+.+++||+.++.+..++.++..+|+...+. .....+++++++.|++. ..++..+.|+.
T Consensus 264 ----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~-------------~~~~~l~~~~~~~la~~--~~g~~~~~l~~ 324 (389)
T 3vfd_A 264 ----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC-------------KQGSPLTQKELAQLARM--TDGYSGSDLTA 324 (389)
T ss_dssp ----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------------TSCCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 145788999998999999999999999875211 12566899999999986 45566789999
Q ss_pred HHHHHHHHHHhcCC
Q 005637 598 LLENILMDAMYEIP 611 (686)
Q Consensus 598 vIe~il~~al~e~~ 611 (686)
+++.....++.++.
T Consensus 325 L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 325 LAKDAALGPIRELK 338 (389)
T ss_dssp HHHHHTTHHHHTSC
T ss_pred HHHHHHHHHHHhhh
Confidence 99888777776643
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.7e-18 Score=184.25 Aligned_cols=223 Identities=20% Similarity=0.283 Sum_probs=160.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+|+.|.+++..+..+... ......++.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~--------------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI--------------------FTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh--------------------HhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4899999999999998744332110 00112234799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|.|.. ...++.++..+. ...++||||||||.+...+.. +.+.....+++.||..|+|..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 4677765 566677766543 246799999999999876432 223334568899999998432
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
. -...+++||+++|..+
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 232 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQ---------------------------------------------- 232 (357)
T ss_dssp -------------------CCCCEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCChh----------------------------------------------
Confidence 1 1123588888877321
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.+.+++||+..+.+..++.++..+|+...+. ...+.+++++++.|++. ..++..+.|+.
T Consensus 233 ----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-------------~~~~~l~~~~l~~la~~--t~G~s~~dl~~ 293 (357)
T 3d8b_A 233 ----EIDEAARRRLVKRLYIPLPEASARKQIVINLMS-------------KEQCCLSEEEIEQIVQQ--SDAFSGADMTQ 293 (357)
T ss_dssp ----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-------------TSCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-------------hcCCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 134678889999999999999999998875221 11456899999999996 45666789999
Q ss_pred HHHHHHHHHHhcCC
Q 005637 598 LLENILMDAMYEIP 611 (686)
Q Consensus 598 vIe~il~~al~e~~ 611 (686)
+++.....++.+..
T Consensus 294 l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 294 LCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHTHHHHHCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99988777776543
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=2.8e-18 Score=177.63 Aligned_cols=223 Identities=25% Similarity=0.323 Sum_probs=157.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+++.|.+++..+..+.... ..+..++.++||+||||||||++|+++|+.++.+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~--------------------~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELF--------------------TGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGS--------------------CGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHH--------------------hcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 37999999999999886443321100 0111234799999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..+.|.. +..++.++..+. ...++||||||+|.+...+... .......+++.||..+++..
T Consensus 82 ~~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 82 FLNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp EEEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC
T ss_pred eEEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhccc
Confidence 9999999886 4577765 566666665543 3568999999999998764421 12223458889999998421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
. .....++++|+++|..+
T Consensus 153 ~----------------~~~~~~v~vi~~tn~~~---------------------------------------------- 170 (297)
T 3b9p_A 153 G----------------NPDGDRIVVLAATNRPQ---------------------------------------------- 170 (297)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred c----------------cCCCCcEEEEeecCChh----------------------------------------------
Confidence 1 01123577888877321
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.|.+++||+..+.++.++.++...|+...+. . ....+++++++.|++. ..++..+.|+.
T Consensus 171 ----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-----------~--~~~~~~~~~~~~la~~--~~g~~~~~l~~ 231 (297)
T 3b9p_A 171 ----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-----------K--QGSPLDTEALRRLAKI--TDGYSGSDLTA 231 (297)
T ss_dssp ----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-----------G--GSCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-----------h--cCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 134778889999999999999998888865221 1 1346889999999986 45666789999
Q ss_pred HHHHHHHHHHhcC
Q 005637 598 LLENILMDAMYEI 610 (686)
Q Consensus 598 vIe~il~~al~e~ 610 (686)
+++.....++.+.
T Consensus 232 l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 232 LAKDAALEPIREL 244 (297)
T ss_dssp HHHHHTTHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 9998877777654
No 28
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=4.1e-19 Score=208.64 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=163.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|++++|+.|.+.|..+.+......+. + ..++.++||+||||||||+|||++|++++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~-------g------------~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAI-------G------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSC-------C------------CCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhc-------C------------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 48999999999999997555432111110 0 1235899999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|+. +..++.+|..+.. ..|+||||||||.+.+.++.. .+...+.+.++||..|+|..
T Consensus 266 ~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCC
T ss_pred EEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhccc
Confidence 9999999998 6799988 7889999988754 579999999999999886542 22334568999999998421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+
T Consensus 337 -------------------~~~~V~VIaaTN~~d---------------------------------------------- 351 (806)
T 3cf2_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp -------------------GGGCEEEEEECSSTT----------------------------------------------
T ss_pred -------------------ccCCEEEEEecCChh----------------------------------------------
Confidence 223588888887332
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|.|++ ||+..|.++.++.++..+|++..+ .+..+. ++.-+..|++. ..++....|
T Consensus 352 ----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l-------------~~~~~~-~dvdl~~lA~~--T~GfsgaDL 411 (806)
T 3cf2_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-------------KNMKLA-DDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC-------------SSSEEC-TTCCHHHHHHH--CCSCCHHHH
T ss_pred ----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh-------------cCCCCC-cccCHHHHHHh--cCCCCHHHH
Confidence 14466776 999999999999999999987521 111221 22236777875 566777899
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
.+++......++.+
T Consensus 412 ~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 412 AALCSEAALQAIRK 425 (806)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998887777654
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=7.5e-18 Score=177.53 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=148.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++|++.+++.+..++.....+ . .+..++||+||||||||++|+++|+.++.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~-----~----------------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR-----N----------------------ECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT-----T----------------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHHHHhc-----C----------------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999888622110 0 013689999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.+++..+.. ...+...+.. .+.+++|||||||.+... +++.|++.|+...
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 83 IKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYR 134 (338)
T ss_dssp EEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSC
T ss_pred eEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhcc
Confidence 99999977642 2233333332 246799999999999876 9999999998544
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
+.+.... ......+.++..++++|+++|..+
T Consensus 135 ~~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~---------------------------------------------- 165 (338)
T 3pfi_A 135 LDIIIGS---GPAAQTIKIDLPKFTLIGATTRAG---------------------------------------------- 165 (338)
T ss_dssp C------------CCCCCCCCCCCEEEEEESCGG----------------------------------------------
T ss_pred chhhccc---CccccceecCCCCeEEEEeCCCcc----------------------------------------------
Confidence 3221100 001122234445688888887311
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.|+|++|++.++.+++++.+++.+++...+... .+.+++++++.|++. +..+.|.+.+
T Consensus 166 ----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~-------------~~~~~~~~~~~l~~~---~~G~~r~l~~ 225 (338)
T 3pfi_A 166 ----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALKL-------------NKTCEEKAALEIAKR---SRSTPRIALR 225 (338)
T ss_dssp ----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-------------TCEECHHHHHHHHHT---TTTCHHHHHH
T ss_pred ----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHH---HCcCHHHHHH
Confidence 15688999999999999999999999887533221 467899999999993 4566799999
Q ss_pred HHHHHHHHHH
Q 005637 598 LLENILMDAM 607 (686)
Q Consensus 598 vIe~il~~al 607 (686)
+++++...+.
T Consensus 226 ~l~~~~~~a~ 235 (338)
T 3pfi_A 226 LLKRVRDFAD 235 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998765544
No 30
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=7.8e-19 Score=189.87 Aligned_cols=190 Identities=23% Similarity=0.405 Sum_probs=140.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEecccccccCcccccHHHHHHHHHh-----------hcchhhHhhcCc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGEDVESILYKLLT-----------VSDYNVAAAQQG 397 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l~~sgyvG~~~~~~l~~l~~-----------~a~~~ve~a~~g 397 (686)
.++|++|++||||+.+|+++....+. +|+.+||+.+.+. ..-.++|. ...+.++.+.+|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~--------~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE--------LAESELFGHEKGAFTGALTRKKGKLELADQG 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT--------THHHHHHEECSCSSSSCCCCEECHHHHTTTS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH--------HHHHHhcCccccccCCcccccCChHhhcCCC
Confidence 67999999999999999999887744 3999999987531 11223332 234567788999
Q ss_pred EEEEccccccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHH
Q 005637 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (686)
Q Consensus 398 ILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i 476 (686)
+||||||+.++.. +|..||++|+ |....+ +..+.+ ..++.+|+++| .++++.+
T Consensus 225 tlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~--------g~~~~~---~~~~rii~at~-~~l~~~v 278 (368)
T 3dzd_A 225 TLFLDEVGELDQR--------------VQAKLLRVLETGSFTRL--------GGNQKI---EVDIRVISATN-KNLEEEI 278 (368)
T ss_dssp EEEEETGGGSCHH--------------HHHHHHHHHHHSEECCB--------TCCCBE---ECCCEEEEEES-SCHHHHH
T ss_pred eEEecChhhCCHH--------------HHHHHHHHHHhCCcccC--------CCCcce---eeeeEEEEecC-CCHHHHH
Confidence 9999999999998 9999999998 433322 112222 23577788777 4565555
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCe-EEEccCcCh--HHHHHHHhhhH
Q 005637 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPK 553 (686)
Q Consensus 477 ~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~--eeL~~IL~~~l 553 (686)
.++ .|+++|..|+.. .|.++||.+ +|+..++...+
T Consensus 279 ~~g------------------------------------------~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l 316 (368)
T 3dzd_A 279 KKG------------------------------------------NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFL 316 (368)
T ss_dssp HTT------------------------------------------SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHH
T ss_pred HcC------------------------------------------CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHH
Confidence 443 367888889965 488999998 89999988766
Q ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 554 NALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 554 ~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
.++.+++. .....++++|++.|.. |+|+++.|+|+++|++++.
T Consensus 317 ~~~~~~~~------~~~~~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 317 KKFAKEYK------KNCFELSEETKEYLMK--QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHTT------CCCCCBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcC------CCCCCcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 55544321 1246799999999998 5677778999999999876
No 31
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.76 E-value=1.7e-18 Score=188.26 Aligned_cols=197 Identities=16% Similarity=0.330 Sum_probs=140.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccccc----cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDE 403 (686)
.+++++|++|||||++|++++.... .||+.+||+.+.+ +..+|+..+. +........+.++.+.+|+|||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~-~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGA-FTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTS-STTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCC-CCCcccccCCceeeCCCcEEEEcC
Confidence 6789999999999999999988763 6899999998752 1122221100 000111234567788899999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCcee-ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcccc
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v-~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~ 482 (686)
|+.++.. +|..||++|+.+.+ .+ +.... ...++.+|+++| .++++.+.++
T Consensus 240 i~~l~~~--------------~q~~Ll~~l~~~~~~~~--------g~~~~---~~~~~rii~at~-~~l~~~~~~g--- 290 (387)
T 1ny5_A 240 IGELSLE--------------AQAKLLRVIESGKFYRL--------GGRKE---IEVNVRILAATN-RNIKELVKEG--- 290 (387)
T ss_dssp GGGCCHH--------------HHHHHHHHHHHSEECCB--------TCCSB---EECCCEEEEEES-SCHHHHHHTT---
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEeC--------CCCce---eeccEEEEEeCC-CCHHHHHHcC---
Confidence 9999988 99999999983332 22 11222 234577888777 4565555543
Q ss_pred CCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcCh--HHHHHHHhhhHHHHHHH
Q 005637 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQ 559 (686)
Q Consensus 483 ~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~--eeL~~IL~~~l~~L~kq 559 (686)
.|+++|..|+. ..+.++||.+ +|+..++..++.++.++
T Consensus 291 ---------------------------------------~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~ 331 (387)
T 1ny5_A 291 ---------------------------------------KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK 331 (387)
T ss_dssp ---------------------------------------SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH
Confidence 36678888885 4588899986 88988888766555443
Q ss_pred HHHHHhhcCCc-cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 005637 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 560 ~~~~~~~~gv~-l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
+ +.. ..+++++++.|.. |+|.+|+|+|+++|++++..
T Consensus 332 ~-------~~~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 332 Y-------AKEVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp T-------TCCCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHHH
T ss_pred c-------CCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 3 223 4699999999998 56778889999999998764
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=8.8e-18 Score=172.62 Aligned_cols=218 Identities=26% Similarity=0.342 Sum_probs=147.3
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++|++.+++.|.+.+..+......... . + ..++.++||+||||||||++|+++|+.++.++
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~--~--~---------------~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEK--V--G---------------IEPPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHH--H--C---------------CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHh--c--C---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999988644332111110 0 0 01237899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh---C
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 435 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE---g 435 (686)
+.+++.++. ..+.|.. ...+..++..+. ...++||||||||.+...+.....+.+ ...+..|+.+++ +
T Consensus 80 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 80 IRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLLAEMDG 150 (285)
T ss_dssp EEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGG---GHHHHHHHHHHHHHHT
T ss_pred EEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCcc---HHHHHHHHHHHHHhhC
Confidence 999999887 4577765 456666666543 246789999999999876443222222 235555555554 2
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (686)
.. ...++++|+|+|..+
T Consensus 151 ~~-------------------~~~~~~vI~ttn~~~-------------------------------------------- 167 (285)
T 3h4m_A 151 FD-------------------ARGDVKIIGATNRPD-------------------------------------------- 167 (285)
T ss_dssp TC-------------------SSSSEEEEEECSCGG--------------------------------------------
T ss_pred CC-------------------CCCCEEEEEeCCCch--------------------------------------------
Confidence 10 113578888887321
Q ss_pred hHHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh
Q 005637 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (686)
Q Consensus 516 ~dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR 593 (686)
.+.|.+++ ||+.++.+++++.++..+|++..+ ... .+. .+..+..|+.. ..++..|
T Consensus 168 ------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~~~--~~~-~~~~~~~l~~~--~~g~~~~ 225 (285)
T 3h4m_A 168 ------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-----------RKM--NLA-EDVNLEEIAKM--TEGCVGA 225 (285)
T ss_dssp ------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-----------TTS--CBC-TTCCHHHHHHH--CTTCCHH
T ss_pred ------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-----------hcC--CCC-CcCCHHHHHHH--cCCCCHH
Confidence 13356666 999999999999999999987521 111 121 22235666664 4556679
Q ss_pred HHHHHHHHHHHHHHhc
Q 005637 594 GLRSLLENILMDAMYE 609 (686)
Q Consensus 594 ~Lr~vIe~il~~al~e 609 (686)
.|+.++..+...++.+
T Consensus 226 ~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988877765
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.76 E-value=1.5e-17 Score=185.64 Aligned_cols=219 Identities=24% Similarity=0.271 Sum_probs=149.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++++|+.+.+.+.. ++...... .. +.. .+.++||+||||||||++|+++|..++.|
T Consensus 17 di~G~~~~~~~l~e~v~~-l~~~~~~~----~~--------------g~~-~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEF-LKDPSKFN----RI--------------GAR-MPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCTHHHH----TT--------------TCC-CCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHH-hhChHHHh----hc--------------CCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 389999999999998752 22110000 00 001 13679999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..|+|.. ...++.+|..+.. ..++||||||||.+...++....+.+...+.+++.||..|++..
T Consensus 77 f~~is~~~~~-~~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 77 FFHISGSDFV-ELFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp EEEEEGGGTT-TCCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred eeeCCHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 9999999987 4577876 5667777776542 46899999999999887654434556666779999999998311
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+
T Consensus 151 -------------------~~~~viVIaaTn~~~---------------------------------------------- 165 (476)
T 2ce7_A 151 -------------------SKEGIIVMAATNRPD---------------------------------------------- 165 (476)
T ss_dssp -------------------GGGTEEEEEEESCGG----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCChh----------------------------------------------
Confidence 123588888887321
Q ss_pred HHhcCCChhhh--cccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (686)
.+.|.++ +||+..+.++.++.++..+|++..+. . ..+.+++ ++.|+.. ..++-.|+
T Consensus 166 ----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~-------------~--~~l~~~v~l~~la~~--t~G~sgad 224 (476)
T 2ce7_A 166 ----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR-------------N--KPLAEDVNLEIIAKR--TPGFVGAD 224 (476)
T ss_dssp ----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT-------------T--SCBCTTCCHHHHHHT--CTTCCHHH
T ss_pred ----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH-------------h--CCCcchhhHHHHHHh--cCCCcHHH
Confidence 0234555 49999999999999999988864211 1 1122222 5667764 34444599
Q ss_pred HHHHHHHHHHHHHh
Q 005637 595 LRSLLENILMDAMY 608 (686)
Q Consensus 595 Lr~vIe~il~~al~ 608 (686)
|++++++....+..
T Consensus 225 L~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 225 LENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998777664
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.76 E-value=2.9e-17 Score=166.03 Aligned_cols=220 Identities=21% Similarity=0.225 Sum_probs=136.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+|+.|.+.+.. ........ .. + ..++.++||+||||||||++|+++|+.++.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~~~~~~----~~---g------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKSPERFL----QL---G------------AKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCCC-------------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHH----Hc---C------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999988752 11100000 00 0 0123789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccC-CCCchHHHHHHHHHHHhCc
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~-~d~~~e~vq~~LL~lLEg~ 436 (686)
++.++++++. ..+.|.. ...+..++..+.. ..++||||||+|.+...+.....+ .+......+..|+..+++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 67 FLAMAGAEFV-EVIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp EEEEETTTTS-SSSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred EEEechHHHH-hhccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 9999999886 3455554 4566666665432 357899999999997764321110 1122233566677767631
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
. ...++++|+++|..+
T Consensus 141 ~-------------------~~~~~~vi~~tn~~~--------------------------------------------- 156 (262)
T 2qz4_A 141 G-------------------TTDHVIVLASTNRAD--------------------------------------------- 156 (262)
T ss_dssp C-------------------TTCCEEEEEEESCGG---------------------------------------------
T ss_pred C-------------------CCCCEEEEecCCChh---------------------------------------------
Confidence 0 123578888877321
Q ss_pred HHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHH-HHHHHHHhcCCCCCChh
Q 005637 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (686)
Q Consensus 517 dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~e-Al~~La~~a~~~~~GAR 593 (686)
.+.+.+++ ||+..+.++.++.++..+|++..+..+ .+..+.+ ....|+.. ..++..|
T Consensus 157 -----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~-------------~~~~~~~~~~~~l~~~--~~g~~~~ 216 (262)
T 2qz4_A 157 -----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL-------------KLTQSSTFYSQRLAEL--TPGFSGA 216 (262)
T ss_dssp -----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT-------------TCCBTHHHHHHHHHHT--CTTCCHH
T ss_pred -----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC-------------CCCcchhhHHHHHHHH--CCCCCHH
Confidence 02255666 999999999999999999887643322 3344444 34677774 3455568
Q ss_pred HHHHHHHHHHHHHH
Q 005637 594 GLRSLLENILMDAM 607 (686)
Q Consensus 594 ~Lr~vIe~il~~al 607 (686)
.|+++++++...+.
T Consensus 217 ~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 217 DIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887665443
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=3.7e-17 Score=166.21 Aligned_cols=220 Identities=22% Similarity=0.259 Sum_probs=148.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+|+.+.+.+.. ...... . + .. .. ..+.++||+||||||||++|+++|+.++.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~-~~~~~~-~-~--~~--------------~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEY-LREPSR-F-Q--KL--------------GG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp GSCSCHHHHHHTHHHHHH-HHCGGG-C-----------------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred HhcCcHHHHHHHHHHHHH-HhCHHH-H-H--Hc--------------CC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 379999999999987742 111000 0 0 00 00 113689999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
++.++++++. ..+.|.. ...+..++..+.. ..++++||||||.+...+...-.+.....+.+++.||..|++..
T Consensus 73 ~~~i~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 73 FFTISGSDFV-EMFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp EEEECSCSST-TSCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred EEEEeHHHHH-HHhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 9999999886 4567766 4566677765432 35689999999999886543222233334457888888888421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+
T Consensus 147 -------------------~~~~~~vI~~tn~~~---------------------------------------------- 161 (257)
T 1lv7_A 147 -------------------GNEGIIVIAATNRPD---------------------------------------------- 161 (257)
T ss_dssp -------------------SSSCEEEEEEESCTT----------------------------------------------
T ss_pred -------------------cCCCEEEEEeeCCch----------------------------------------------
Confidence 123577888877321
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (686)
.+.|.+++ ||+..+.+..++.++..+|++..+. .+.+++++ +..++.. ..++..|+
T Consensus 162 ----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~---------------~~~l~~~~~~~~la~~--~~G~~~~d 220 (257)
T 1lv7_A 162 ----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR---------------RVPLAPDIDAAIIARG--TPGFSGAD 220 (257)
T ss_dssp ----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT---------------TSCBCTTCCHHHHHHT--CTTCCHHH
T ss_pred ----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh---------------cCCCCccccHHHHHHH--cCCCCHHH
Confidence 12345554 9999999999999998888764211 12233333 4555553 34558899
Q ss_pred HHHHHHHHHHHHHhc
Q 005637 595 LRSLLENILMDAMYE 609 (686)
Q Consensus 595 Lr~vIe~il~~al~e 609 (686)
|++++++++..+..+
T Consensus 221 l~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 221 LANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877654
No 36
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.72 E-value=4.6e-17 Score=182.39 Aligned_cols=222 Identities=20% Similarity=0.270 Sum_probs=158.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+++.|.+.+............ .. ..++.++||+||||||||++|+++|+.++.+
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~--~g-----------------~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKA--IG-----------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHH--HT-----------------CCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHh--cC-----------------CCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999998744332111110 00 0124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++|+++. ..|+|+. ...+..+|..+.. ..++||||||||.+...+... .......+++.||.+|++..
T Consensus 266 fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp EEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccc
Confidence 9999999987 5688876 5667777776543 467899999999998864421 12233469999999998321
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+|+|..+
T Consensus 337 -------------------~~~~v~vIaaTn~~~---------------------------------------------- 351 (489)
T 3hu3_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (489)
T ss_dssp -------------------TTSCEEEEEEESCGG----------------------------------------------
T ss_pred -------------------cCCceEEEEecCCcc----------------------------------------------
Confidence 123588888887321
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|.+++ ||+..+.+..++.++..+|++..+. ...+. .+..++.++.. ..++..+.|
T Consensus 352 ----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~-------------~~~l~-~~~~l~~la~~--t~g~s~~dL 411 (489)
T 3hu3_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK-------------NMKLA-DDVDLEQVANE--THGHVGADL 411 (489)
T ss_dssp ----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT-------------TSCBC-TTCCHHHHHHT--CTTCCHHHH
T ss_pred ----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh-------------cCCCc-chhhHHHHHHH--ccCCcHHHH
Confidence 03356665 8999999999999999999875211 11222 22235667774 556677999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 005637 596 RSLLENILMDAMYEIPD 612 (686)
Q Consensus 596 r~vIe~il~~al~e~~~ 612 (686)
+.++++....++.+...
T Consensus 412 ~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 412 AALCSEAALQAIRKKMD 428 (489)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999998888876543
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=4.1e-17 Score=180.84 Aligned_cols=211 Identities=27% Similarity=0.324 Sum_probs=142.7
Q ss_pred ccChHHHH---HHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 279 VIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 279 VvGqd~aK---~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
++||++++ +.|..++... ...++||+||||||||++|++||+.++
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 79999999 7777777410 015899999999999999999999999
Q ss_pred CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005637 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg 435 (686)
.+|+.+++.... ...++..+..+......+.++||||||||.+... .|+.||+.||.
T Consensus 76 ~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~ 132 (447)
T 3pvs_A 76 ADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED 132 (447)
T ss_dssp CEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT
T ss_pred CCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc
Confidence 999999875432 1234444444333333456799999999999876 89999999992
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (686)
+ .+++|++++...
T Consensus 133 --------~---------------~v~lI~att~n~-------------------------------------------- 145 (447)
T 3pvs_A 133 --------G---------------TITFIGATTENP-------------------------------------------- 145 (447)
T ss_dssp --------T---------------SCEEEEEESSCG--------------------------------------------
T ss_pred --------C---------------ceEEEecCCCCc--------------------------------------------
Confidence 1 245565543110
Q ss_pred hHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 516 ~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
...+.+.|++|+. ++.|.+++.+++.+++...+....+. ..+..+.+++++++.|++. ++.++|.+
T Consensus 146 ----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~------~~~~~~~i~~~al~~L~~~---~~Gd~R~l 211 (447)
T 3pvs_A 146 ----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRG------YGGQDIVLPDETRRAIAEL---VNGDARRA 211 (447)
T ss_dssp ----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTS------STTSSEECCHHHHHHHHHH---HCSCHHHH
T ss_pred ----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhh------hccccCcCCHHHHHHHHHH---CCCCHHHH
Confidence 0125688999987 77899999999999998643321110 0114678999999999997 46778999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCccceEEEchhcccccc
Q 005637 596 RSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (686)
Q Consensus 596 r~vIe~il~~al~e~~~~~~g~~~i~~vlVdee~v~~~~ 634 (686)
.++++.++..+..+ ......|+.+.+....
T Consensus 212 ln~Le~a~~~a~~~---------~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 212 LNTLEMMADMAEVD---------DSGKRVLKPELLTEIA 241 (447)
T ss_dssp HHHHHHHHHHSCBC---------TTSCEECCHHHHHHHH
T ss_pred HHHHHHHHHhcccc---------cCCCCccCHHHHHHHH
Confidence 99999887643111 0012456777666544
No 38
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.71 E-value=2e-16 Score=166.48 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=127.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-------CEEEEecccccccC--------------------cccccHHHHH---
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV-------PFVIADATTLTQAG--------------------YVGEDVESIL--- 380 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-------pfv~v~~s~l~~sg--------------------yvG~~~~~~l--- 380 (686)
.++||+||||||||++|+++++.++. +| +|....... ..+......+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 57999999999999999999998863 21 222111000 0111111111
Q ss_pred --HHHHhh-----cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCc
Q 005637 381 --YKLLTV-----SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (686)
Q Consensus 381 --~~l~~~-----a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~ 453 (686)
...+.. ..+.+..+.++|||||||+++... +++.|+++|+.....+...|. .
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~-------~ 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGL-------S 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTC-------C
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecce-------E
Confidence 111111 223445567899999999999887 999999999844333322221 1
Q ss_pred eEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCe
Q 005637 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV 533 (686)
Q Consensus 454 i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~ 533 (686)
.. ...++++|+++|..+ ..+.|+|++||+.
T Consensus 182 ~~-~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 IR-HPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp EE-EECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred Ee-eCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 11 233688888877310 1266889999998
Q ss_pred EEEccCcC-hHHHHHHHhhhHHH------H----------HHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCC-ChhHH
Q 005637 534 LVSLLALT-ENQLVQVLTEPKNA------L----------GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGL 595 (686)
Q Consensus 534 iI~f~pLs-~eeL~~IL~~~l~~------L----------~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~-GAR~L 595 (686)
.+.+++++ .++..+|+...+.. + .+++..........+.++++++++|++..+..+. ++|.+
T Consensus 212 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 89999995 55666787653211 0 0111100111223568999999999999877776 68999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
.++++.+...+..+
T Consensus 292 ~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 292 LTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999876665543
No 39
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.71 E-value=2.5e-16 Score=176.74 Aligned_cols=219 Identities=26% Similarity=0.319 Sum_probs=148.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++++|+.+.+.+.. +... . . ....+..+ +.++||+||||||||+||+++|..++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~~~----~---~-----------~~~lg~~i-p~GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LKNP----S---R-----------FHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCG----G---G-----------TTTTSCCC-CSEEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hhch----h---h-----------hhhccCCC-CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999988752 2210 0 0 00111122 2569999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.++++++. ..++|.. ...++.+|..+.. ..++|+||||||.+...+.....+.+...+..++.||..|+|..
T Consensus 92 ~i~i~g~~~~-~~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGT-SSCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHH-HhhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 9999999987 3567765 4567777776542 35799999999999876543212223344567888888888421
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
..+.+++|+++|..++
T Consensus 166 -------------------~~~~viviAatn~p~~--------------------------------------------- 181 (499)
T 2dhr_A 166 -------------------KDTAIVVMAATNRPDI--------------------------------------------- 181 (499)
T ss_dssp -------------------SSCCCEEEECCSCGGG---------------------------------------------
T ss_pred -------------------cCccEEEEEecCChhh---------------------------------------------
Confidence 1124677777763210
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (686)
+.|.+++ ||+.++.++.++.++..+|++..+ . .+.+++++ +..|+.. +. ++-.|+
T Consensus 182 -----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~-------------~--~~~l~~dv~l~~lA~~-t~-G~~gad 239 (499)
T 2dhr_A 182 -----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR-TP-GFVGAD 239 (499)
T ss_dssp -----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-------------S--SSCCCCSSTTHHHHTT-SC-SCCHHH
T ss_pred -----cCcccccccccceEEecCCCCHHHHHHHHHHHH-------------h--cCCCChHHHHHHHHHh-cC-CCCHHH
Confidence 3355655 899999999999999999886421 1 23344444 5666653 33 333499
Q ss_pred HHHHHHHHHHHHHh
Q 005637 595 LRSLLENILMDAMY 608 (686)
Q Consensus 595 Lr~vIe~il~~al~ 608 (686)
|+++++++...+..
T Consensus 240 L~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 240 LENLLNEAALLAAR 253 (499)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776653
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=4.1e-16 Score=162.64 Aligned_cols=202 Identities=23% Similarity=0.355 Sum_probs=143.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++|++.+++.+..++...... . .++.++||+||||||||++|+++++.++.+|
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~----~-----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKAR----K-----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----C-----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred hhCHHHHHHHHHHHHHHHHcc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 799999999998887522110 0 0126899999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.++++.+.. ...+...+... .+.+++|||||||.+... .++.|+.+|+...+
T Consensus 67 ~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~ 119 (324)
T 1hqc_A 67 RVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVM 119 (324)
T ss_dssp EEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEE
T ss_pred EEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhh
Confidence 9999977642 12233333321 146789999999999876 89999999985443
Q ss_pred ecC-CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 439 ~vp-~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
.+. ..+ .....+.....++++|+++|..+
T Consensus 120 ~~v~~~~----~~~~~~~~~~~~~~~i~~t~~~~---------------------------------------------- 149 (324)
T 1hqc_A 120 DIVIGQG----PAARTIRLELPRFTLIGATTRPG---------------------------------------------- 149 (324)
T ss_dssp EECCSSS----SSCCCEEEECCCCEEEEEESCCS----------------------------------------------
T ss_pred HHhcccc----ccccccccCCCCEEEEEeCCCcc----------------------------------------------
Confidence 321 111 11122334455788888877321
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
.+.+.|++|++.++.+.+++.+++.+++...+. ...+.+++++++.|+++. ....|.+++
T Consensus 150 ----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-------------~~~~~~~~~~~~~l~~~~---~G~~r~l~~ 209 (324)
T 1hqc_A 150 ----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-------------LLGVRITEEAALEIGRRS---RGTMRVAKR 209 (324)
T ss_dssp ----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-------------TTTCCCCHHHHHHHHHHS---CSCHHHHHH
T ss_pred ----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHHc---cCCHHHHHH
Confidence 255779999988999999999998888765321 114579999999999972 455799999
Q ss_pred HHHHHHH
Q 005637 598 LLENILM 604 (686)
Q Consensus 598 vIe~il~ 604 (686)
+++++..
T Consensus 210 ~l~~~~~ 216 (324)
T 1hqc_A 210 LFRRVRD 216 (324)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887643
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.70 E-value=5.1e-17 Score=169.92 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=103.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
+.++||+||||||||++|+++|+.++.+|+.++++++. ..|+|.. ...+...|..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 47899999999999999999999999999999999987 5788877 566777777664333345789999999999988
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCc
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~ 489 (686)
.+.. ........+.+++.|+.+||+..... ..+.....+..++++|+|+|..+
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~--------~~~~~~~~~~~~v~vI~ttN~~~------------------ 166 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQ--------LPGMYNKQENARVPIIVTGNDFS------------------ 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCC------------------
T ss_pred CCCC-CccccchHHHHHHHHHHHhccccccc--------cccccccccCCCcEEEEecCCcc------------------
Confidence 5332 22223345568999999998432110 00000123456799999988431
Q ss_pred ccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhh--cccCeEEEccCcChHHHHHHHhh
Q 005637 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl--~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
.+.|+|+ +||+.++.++ +.++..+|++.
T Consensus 167 --------------------------------~ld~al~R~~R~d~~i~~P--~~~~r~~Il~~ 196 (293)
T 3t15_A 167 --------------------------------TLYAPLIRDGRMEKFYWAP--TREDRIGVCTG 196 (293)
T ss_dssp --------------------------------C--CHHHHHHHEEEEEECC--CHHHHHHHHHH
T ss_pred --------------------------------cCCHHHhCCCCCceeEeCc--CHHHHHHHHHH
Confidence 1335566 5999777653 89999999874
No 42
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.68 E-value=4.9e-16 Score=161.30 Aligned_cols=225 Identities=20% Similarity=0.257 Sum_probs=149.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|.|.+++|+.|.+.+..++........ .++.. +.+++|+||||||||+||+++|..++.+
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~------------------~~l~~-~~GvlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKA------------------LGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHH------------------TTCCC-CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHH------------------cCCCC-CCeEEEECCCCCcHHHHHHHHHHHcCCC
Confidence 3799999999999988766653221110 01122 2569999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
++.+++.++. ..|.|+. +..+..+|..+.. ..++++|+||+|.+...+..... + ....+.+.++..|+|..
T Consensus 72 ~i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~--~-~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 72 FISVKGPELL-NMYVGES-ERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRET--G-ASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp EEEEETTTTC-SSTTHHH-HHHHHHHHHHHHH----TCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCC
T ss_pred EEEEEcHHHH-hhhhhHH-HHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcc--h-HHHHHHHHHHHhhhccc
Confidence 9999998886 4566665 5667777776432 35789999999998765432111 1 11237888999998431
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
..+.+++++++|..+
T Consensus 143 -------------------~~~~~i~ia~tn~p~---------------------------------------------- 157 (274)
T 2x8a_A 143 -------------------ARQQVFIMAATNRPD---------------------------------------------- 157 (274)
T ss_dssp -------------------STTCEEEEEEESCGG----------------------------------------------
T ss_pred -------------------ccCCEEEEeecCChh----------------------------------------------
Confidence 112356666666321
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC-HHHHHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s-~eAl~~La~~a~~~~~GAR~ 594 (686)
-+.|+++. |||..|.++.++.++..+|++..+ + .+....++ +-.++.|+......++-...
T Consensus 158 ----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~-----------~-~~~~~~~~~~~~~~~la~~~~~~g~sgad 221 (274)
T 2x8a_A 158 ----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-----------K-NGTKPPLDADVNLEAIAGDLRCDCYTGAD 221 (274)
T ss_dssp ----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT-----------T-TTBTTBBCTTCCHHHHHTCSGGGSCCHHH
T ss_pred ----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH-----------h-cccCCCCccccCHHHHHHhhccCCcCHHH
Confidence 03466765 999999999999999999987521 1 11111221 22355666643334677789
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005637 595 LRSLLENILMDAMYEIP 611 (686)
Q Consensus 595 Lr~vIe~il~~al~e~~ 611 (686)
|.+++++....++.+..
T Consensus 222 l~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 222 LSALVREASICALRQEM 238 (274)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888876543
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.68 E-value=1.4e-15 Score=161.54 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=135.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (686)
.++|++.+++.+..++.. +..+ ..++.++||+||||||||++|+++|+.++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~----~~~~-----------------------~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEM----IREG-----------------------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHH----HHTT-----------------------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHH----HHcC-----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 379999999987765531 1000 011368999999999999999999999864
Q ss_pred -CEEEEecccccccCcccccH------------------------------------------------HHHHHHHHhhc
Q 005637 357 -PFVIADATTLTQAGYVGEDV------------------------------------------------ESILYKLLTVS 387 (686)
Q Consensus 357 -pfv~v~~s~l~~sgyvG~~~------------------------------------------------~~~l~~l~~~a 387 (686)
+|+.+++..+.. .+.+... ...++..+..+
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 176 (368)
T 3uk6_A 98 TPFTAIAGSEIFS-LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAK 176 (368)
T ss_dssp CCEEEEEGGGGSC-SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHH
T ss_pred CCcccccchhhhh-cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHH
Confidence 899898876432 1111110 11122222221
Q ss_pred chhhH-h----hcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeec-cce
Q 005637 388 DYNVA-A----AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT-KDI 461 (686)
Q Consensus 388 ~~~ve-~----a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vdt-sni 461 (686)
..... . ..++||||||||.+... .++.|++.++... ...+.+.+ ..+
T Consensus 177 ~~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~~-------------~~~~ii~t~~~~ 229 (368)
T 3uk6_A 177 VAEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESDM-------------APVLIMATNRGI 229 (368)
T ss_dssp HHHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCTT-------------CCEEEEEESCSE
T ss_pred HHHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCcC-------------CCeeeeecccce
Confidence 11000 1 12579999999999876 9999999998211 00011111 112
Q ss_pred EEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcC
Q 005637 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT 541 (686)
Q Consensus 462 IfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs 541 (686)
.+|.+++... ...+.|.|++|+.. +.|++++
T Consensus 230 ~~i~~t~~~~------------------------------------------------~~~l~~~l~sR~~~-i~~~~~~ 260 (368)
T 3uk6_A 230 TRIRGTSYQS------------------------------------------------PHGIPIDLLDRLLI-VSTTPYS 260 (368)
T ss_dssp EECBTSSCEE------------------------------------------------ETTCCHHHHTTEEE-EEECCCC
T ss_pred eeeeccCCCC------------------------------------------------cccCCHHHHhhccE-EEecCCC
Confidence 2222221000 01256889999985 7999999
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhc
Q 005637 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 542 ~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e 609 (686)
.+++.+|++..+.. . .+.++++++++|++.++. ++.|.+.+++++++..+..+
T Consensus 261 ~~e~~~il~~~~~~-----------~--~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 261 EKDTKQILRIRCEE-----------E--DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp HHHHHHHHHHHHHH-----------T--TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHh
Confidence 99999999763221 1 467999999999997533 66899999999988776544
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=1.7e-16 Score=162.89 Aligned_cols=177 Identities=23% Similarity=0.293 Sum_probs=119.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccH---HHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~---~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
+.++||+||||||||++|+++|+.++.+|+.+++++. ++|... ...+..++..+. ...++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhh
Confidence 3799999999999999999999999999999998753 334332 233444444321 24578999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCC
Q 005637 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (686)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~ig 486 (686)
+...+.. .......+++.|+..+++.. -...++++|+|+|..+
T Consensus 136 l~~~~~~----~~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~--------------- 178 (272)
T 1d2n_A 136 LLDYVPI----GPRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKD--------------- 178 (272)
T ss_dssp HTTCBTT----TTBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHH---------------
T ss_pred hhccCCC----ChhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChh---------------
Confidence 8654221 11123347777777776210 0123477888877321
Q ss_pred cCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh-HHHHHHHhhhHHHHHHHHHHHHh
Q 005637 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~-eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
.++. ..+.+||+..+.+++++. +++.+++..
T Consensus 179 ----------------------~l~~------------~~l~~rf~~~i~~p~l~~r~~i~~i~~~-------------- 210 (272)
T 1d2n_A 179 ----------------------VLQE------------MEMLNAFSTTIHVPNIATGEQLLEALEL-------------- 210 (272)
T ss_dssp ----------------------HHHH------------TTCTTTSSEEEECCCEEEHHHHHHHHHH--------------
T ss_pred ----------------------hcch------------hhhhcccceEEcCCCccHHHHHHHHHHh--------------
Confidence 0110 136789999999999998 777766643
Q ss_pred hcCCccccCHHHHHHHHHhc--CCCCCChhHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKA--ISKNTGARGLRSLLENIL 603 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a--~~~~~GAR~Lr~vIe~il 603 (686)
...++++++..|++.. |.|..++|.+.++++...
T Consensus 211 ----~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 ----LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp ----HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred ----cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 1246899999998863 445567999999998753
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=9.9e-16 Score=160.60 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=136.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++|++++++.+..++... ..+..+|++||||||||++|+++|+.++.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~-------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG-------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT-------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999888510 012567888999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc-hhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~-~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
++.+++++.. .......+......... ...+.||||||+|.+. .. .++.|++.|+.
T Consensus 76 ~~~i~~~~~~-----~~~i~~~~~~~~~~~~~---~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~- 132 (324)
T 3u61_B 76 MMFVNGSDCK-----IDFVRGPLTNFASAASF---DGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEA- 132 (324)
T ss_dssp EEEEETTTCC-----HHHHHTHHHHHHHBCCC---SSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHH-
T ss_pred EEEEcccccC-----HHHHHHHHHHHHhhccc---CCCCeEEEEECCcccCcHH--------------HHHHHHHHHHh-
Confidence 9999986642 11111222222221111 1256899999999998 65 89999999982
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
...++.||+++|...
T Consensus 133 --------------------~~~~~~iI~~~n~~~--------------------------------------------- 147 (324)
T 3u61_B 133 --------------------YSSNCSIIITANNID--------------------------------------------- 147 (324)
T ss_dssp --------------------HGGGCEEEEEESSGG---------------------------------------------
T ss_pred --------------------CCCCcEEEEEeCCcc---------------------------------------------
Confidence 123467777776311
Q ss_pred HHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH-HHHHHHHHhcCCCCCChhHH
Q 005637 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 517 dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~-eAl~~La~~a~~~~~GAR~L 595 (686)
.+.+.+++|+. ++.|.+++.+++.+|+...+..+.+.. ... .+.+++ +++++|++. .+.+.|.+
T Consensus 148 -----~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~----~~~--~~~~~~~~~~~~l~~~---~~gd~R~a 212 (324)
T 3u61_B 148 -----GIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEIC----KHE--GIAIADMKVVAALVKK---NFPDFRKT 212 (324)
T ss_dssp -----GSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHH----HHH--TCCBSCHHHHHHHHHH---TCSCTTHH
T ss_pred -----ccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHH----HHc--CCCCCcHHHHHHHHHh---CCCCHHHH
Confidence 15578999996 799999999999988887555543332 223 457787 999999987 35667999
Q ss_pred HHHHHHHH
Q 005637 596 RSLLENIL 603 (686)
Q Consensus 596 r~vIe~il 603 (686)
.+.++...
T Consensus 213 ~~~L~~~~ 220 (324)
T 3u61_B 213 IGELDSYS 220 (324)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHh
Confidence 88888765
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=2.5e-16 Score=165.77 Aligned_cols=229 Identities=22% Similarity=0.250 Sum_probs=148.1
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHH
Q 005637 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 270 el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (686)
.+...+.+.|+||+++++.+..++.. ..++||+||||||||++|++
T Consensus 20 ~~~~~~~~~i~g~~~~~~~l~~~l~~----------------------------------~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 20 EVIDEVGKVVVGQKYMINRLLIGICT----------------------------------GGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHHHHHH----------------------------------TCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHhccceeCcHHHHHHHHHHHHc----------------------------------CCeEEEECCCCCcHHHHHHH
Confidence 46777788899999999988887741 26899999999999999999
Q ss_pred HHHhcCCCEEEEeccc-ccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 350 LARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 350 LA~~l~~pfv~v~~s~-l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
+|+.++.+++.++++. ......+|..........+....+. -..+|||||||+++... +++.
T Consensus 66 la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~---l~~~vl~iDEi~~~~~~--------------~~~~ 128 (331)
T 2r44_A 66 LAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGP---VFSNFILADEVNRSPAK--------------VQSA 128 (331)
T ss_dssp HHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECT---TCSSEEEEETGGGSCHH--------------HHHH
T ss_pred HHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCc---ccccEEEEEccccCCHH--------------HHHH
Confidence 9999999999998852 2111111211000000000000000 12479999999999877 9999
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
|++.|+...+.+ .| ..+. ...++++|+|+|..+. .|
T Consensus 129 Ll~~l~~~~~~~--~g-------~~~~-~~~~~~viat~np~~~------------~~---------------------- 164 (331)
T 2r44_A 129 LLECMQEKQVTI--GD-------TTYP-LDNPFLVLATQNPVEQ------------EG---------------------- 164 (331)
T ss_dssp HHHHHHHSEEEE--TT-------EEEE-CCSSCEEEEEECTTCC------------SC----------------------
T ss_pred HHHHHhcCceee--CC-------EEEE-CCCCEEEEEecCCCcc------------cC----------------------
Confidence 999999555543 12 1111 2235777777663210 00
Q ss_pred HHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHH-------------HHHHHHHHhhcCCccccCH
Q 005637 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL-------------GKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L-------------~kq~~~~~~~~gv~l~~s~ 575 (686)
.+.+.+.|++||+..+.+.+++.++..+|++...... ..+.++. ...+.+++
T Consensus 165 -----------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~v~~~~ 229 (331)
T 2r44_A 165 -----------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE----INKVTISE 229 (331)
T ss_dssp -----------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH----HHTCBCCH
T ss_pred -----------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH----hccCCCCH
Confidence 0126688999999889999999999999997643210 0111111 12577899
Q ss_pred HHHHHHHHhcC-----------------CCCCChhHHHHHHHHHHHHHHh
Q 005637 576 NALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 576 eAl~~La~~a~-----------------~~~~GAR~Lr~vIe~il~~al~ 608 (686)
++++++++... ..+.+.|.+.++++..-..+..
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 99999987431 1234689999888876554443
No 47
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=3.8e-17 Score=187.15 Aligned_cols=256 Identities=19% Similarity=0.185 Sum_probs=152.3
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHH
Q 005637 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 270 el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (686)
.+.+.|...|+||+.+|+.+..++.....+ .. .+ .......++||+||||||||++|++
T Consensus 288 ~l~~~l~~~I~G~e~vk~al~~~l~~g~~~---------~~--~~----------~~~r~~~~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 288 RIISSIAPSIYGHWELKEALALALFGGVPK---------VL--ED----------TRIRGDIHILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp THHHHTSSTTSCCHHHHHHHTTTTTCCCCE---------ET--TT----------TEECCSCCEEEEESSCCTHHHHHHS
T ss_pred HHHHhhcchhcChHHHHHHHHHHHhCCCcc---------cc--cC----------CCcCCCcceEEECCCchHHHHHHHH
Confidence 377788888999999998886555311000 00 00 0111235999999999999999999
Q ss_pred HHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHH
Q 005637 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (686)
Q Consensus 350 LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (686)
+|+.++..++.... .....++.+..........+...++.+..+.+||+||||||++.+. +|+.|
T Consensus 347 la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~~L 411 (595)
T 3f9v_A 347 ISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRVAI 411 (595)
T ss_dssp SSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHHHH
T ss_pred HHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhhhh
Confidence 99999766554221 1111223332211111111222234556678899999999999887 99999
Q ss_pred HHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHH
Q 005637 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (686)
Q Consensus 430 L~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~l 509 (686)
+++||...+.+...|.. .. ...++.+|+|+|... +.++. ... +
T Consensus 412 l~~le~~~i~i~~~g~~-------~~-~~~~~~vIaatNp~~-------G~~~~-------~~~---------------~ 454 (595)
T 3f9v_A 412 HEAMEQQTVSIAKAGIV-------AK-LNARAAVIAAGNPKF-------GRYIS-------ERP---------------V 454 (595)
T ss_dssp HHHHHSSSEEEESSSSE-------EE-ECCCCEEEEEECCTT-------CCSCT-------TSC---------------S
T ss_pred HHHHhCCEEEEecCCcE-------EE-ecCceEEEEEcCCcC-------CccCc-------ccC---------------c
Confidence 99999666655433321 12 235688888888431 11100 000 0
Q ss_pred HhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH-------------HHHHHHHHHhhcCCccccCHH
Q 005637 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA-------------LGKQYRKMFQMNGVKLHFTEN 576 (686)
Q Consensus 510 l~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~-------------L~kq~~~~~~~~gv~l~~s~e 576 (686)
.+. -.+.++|++|||.++.+.++..++...|+++.+.. ..++|.... ...+...++++
T Consensus 455 ~~n--------i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a-r~~~~p~ls~e 525 (595)
T 3f9v_A 455 SDN--------INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYA-RKYVTPKITSE 525 (595)
T ss_dssp CTT--------TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH-HHHHCCCCCCC
T ss_pred hhc--------cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHH-HHhCCCCCCHH
Confidence 001 13779999999988777777766544444432221 112222211 11123478889
Q ss_pred HHHHHHHhcC------------CCCCChhHHHHHHHHHHHHHH
Q 005637 577 ALRLIAKKAI------------SKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 577 Al~~La~~a~------------~~~~GAR~Lr~vIe~il~~al 607 (686)
+.+.|.++.. .+...+|.|.++++..-..|.
T Consensus 526 a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 568 (595)
T 3f9v_A 526 AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAK 568 (595)
T ss_dssp THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHH
Confidence 9999988622 356778999999986554443
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.65 E-value=1.6e-15 Score=167.85 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=78.0
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC-
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~- 355 (686)
+.|+||+++++.+...+.. ++ .+ ..++.++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~-~~---~~-----------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL-IK---SK-----------------------KMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH-HH---TT-----------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHH-HH---hC-----------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 4589999999999887741 11 00 01247999999999999999999999998
Q ss_pred -CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhc
Q 005637 356 -VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 356 -~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r 411 (686)
.+|+.++++++. ..|+|.. +. +...|..+.. .....++||||||||.+...+
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 90 KVPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp TSCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC-
T ss_pred CceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhccccc
Confidence 899999999987 6788876 44 7777776621 122466788888888777554
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.63 E-value=8.3e-15 Score=148.55 Aligned_cols=219 Identities=26% Similarity=0.312 Sum_probs=140.0
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
|+|++++++.+...+.. |..... .. ..++..+ .+++|+||||||||+|+++++..++.++
T Consensus 18 i~g~~~~~~~l~~l~~~-~~~~~~-~~-----------------~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEF-LKNPSR-FH-----------------EMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCHHH-HH-----------------HTTCCCC-SEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hCCcHHHHHHHHHHHHH-HHCHHH-HH-----------------HcCCCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999999999887642 321100 00 0011122 4599999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
+.+++.++.. .+.+.. ...+..+++.+.. ..++++++||||.+...+.....+.+......++.|+..|+|..
T Consensus 78 i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~- 150 (254)
T 1ixz_A 78 ITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE- 150 (254)
T ss_dssp EEEEHHHHHH-SCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-
T ss_pred EEeeHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-
Confidence 9999887752 344544 3455666655431 24689999999998765432111122233457788888888421
Q ss_pred ecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHH
Q 005637 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (686)
Q Consensus 439 ~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (686)
..+.++++++++..+
T Consensus 151 ------------------~~~~~i~~a~t~~p~----------------------------------------------- 165 (254)
T 1ixz_A 151 ------------------KDTAIVVMAATNRPD----------------------------------------------- 165 (254)
T ss_dssp ------------------TTCCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEccCCch-----------------------------------------------
Confidence 012356666655221
Q ss_pred HhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChhHH
Q 005637 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (686)
Q Consensus 519 ~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR~L 595 (686)
.+.|.+++ ||+..+.++.++.++..+|++... . .+.+++++ +..|++. ..++-+|+|
T Consensus 166 ---~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~--~~G~~~~dl 225 (254)
T 1ixz_A 166 ---ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVGADL 225 (254)
T ss_dssp ---GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT--CTTCCHHHH
T ss_pred ---hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-------------c--CCCCCcccCHHHHHHH--cCCCCHHHH
Confidence 03356665 899999999999999999986421 1 12344333 6677775 334446999
Q ss_pred HHHHHHHHHHHHhc
Q 005637 596 RSLLENILMDAMYE 609 (686)
Q Consensus 596 r~vIe~il~~al~e 609 (686)
+++++++...+..+
T Consensus 226 ~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 226 ENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988777643
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=1e-14 Score=141.08 Aligned_cols=187 Identities=22% Similarity=0.292 Sum_probs=129.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|++++++.+...+... ...+++|+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3799999999998887510 01469999999999999999999875
Q ss_pred --CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 355 --~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
...++.+++...... ......+........ .....+.+|+|||+|.+... .++.|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGI----DVVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCH----HHHHHHHHHHHTSCC--STTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccCh----HHHHHHHHHHhcccC--CCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 456888887654311 011122222222111 11246789999999999876 78899999
Q ss_pred HhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 433 LEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
++. ...++.+|++++...
T Consensus 126 l~~---------------------~~~~~~~i~~~~~~~----------------------------------------- 143 (226)
T 2chg_A 126 MEM---------------------YSKSCRFILSCNYVS----------------------------------------- 143 (226)
T ss_dssp HHH---------------------TTTTEEEEEEESCGG-----------------------------------------
T ss_pred HHh---------------------cCCCCeEEEEeCChh-----------------------------------------
Confidence 982 012356666665210
Q ss_pred cCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 513 v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
.+.+.+.+|+. ++.|.+++.+++.+++...+... .+.+++++++.|++.. +++.
T Consensus 144 ---------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~l~~~~---~g~~ 197 (226)
T 2chg_A 144 ---------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKE-------------GVKITEDGLEALIYIS---GGDF 197 (226)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH-------------TCCBCHHHHHHHHHHH---TTCH
T ss_pred ---------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHc---CCCH
Confidence 14477888988 89999999999998887532211 4568999999999753 5567
Q ss_pred hHHHHHHHHHHH
Q 005637 593 RGLRSLLENILM 604 (686)
Q Consensus 593 R~Lr~vIe~il~ 604 (686)
|.+.++++++..
T Consensus 198 r~l~~~l~~~~~ 209 (226)
T 2chg_A 198 RKAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.62 E-value=1.3e-17 Score=169.98 Aligned_cols=216 Identities=25% Similarity=0.339 Sum_probs=133.6
Q ss_pred ccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r--~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
++|++.+++.+.+++.. +.. .+..... ..+.++||+||||||||++|+++|+.++.
T Consensus 13 i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~---------------------~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDF-LKYPERYANLGA---------------------KIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SSSCTTTHHHHHHHHHH-HHCHHHHHHHSC---------------------CCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred hCCcHHHHHHHHHHHHH-HHChHHHHHCCC---------------------CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 79999999999987752 111 0110000 01367999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccc-cCCCCchHHHHHHHHHHHhC
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN-ISRDVSGEGVQQALLKMLEG 435 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~-~~~d~~~e~vq~~LL~lLEg 435 (686)
+|+.++++++. ..+.|.. ...+..++..+. ...++||||||+|.+...+...+ .+.+.....+++.|+..|++
T Consensus 71 ~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFI-EMFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTT-TSCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHH-HhhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 99999998876 3455544 222333333322 13568999999999987653221 11122222366777777763
Q ss_pred ceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCc
Q 005637 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (686)
Q Consensus 436 ~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (686)
.. -...++++|+|+|..+
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~-------------------------------------------- 162 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPE-------------------------------------------- 162 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCT--------------------------------------------
T ss_pred cc------------------cCCCCEEEEEecCCch--------------------------------------------
Confidence 10 0223478888877321
Q ss_pred hHHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh
Q 005637 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (686)
Q Consensus 516 ~dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR 593 (686)
.+.|.+++ ||+..+.+..++.++..+|++..+. +..+. ++..++.|++. ..++..|
T Consensus 163 ------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~-------------~~~~~-~~~~~~~la~~--~~g~~g~ 220 (268)
T 2r62_A 163 ------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK-------------GVKLA-NDVNLQEVAKL--TAGLAGA 220 (268)
T ss_dssp ------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS-------------SSCCC-SSCCTTTTTSS--SCSSCHH
T ss_pred ------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh-------------cCCCC-CccCHHHHHHH--cCCCCHH
Confidence 13355665 8998999999999999998864211 11111 12224445554 3344458
Q ss_pred HHHHHHHHHHHHH
Q 005637 594 GLRSLLENILMDA 606 (686)
Q Consensus 594 ~Lr~vIe~il~~a 606 (686)
+|+++++++...+
T Consensus 221 dl~~l~~~a~~~a 233 (268)
T 2r62_A 221 DLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876644
No 52
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=8.1e-15 Score=151.13 Aligned_cols=220 Identities=25% Similarity=0.305 Sum_probs=137.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++++++.+...+. .|..... .. ..++..+ .+++|+||||||||+|+++++..++.+
T Consensus 41 ~i~g~~~~~~~l~~l~~-~~~~~~~-l~-----------------~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVE-FLKNPSR-FH-----------------EMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp GSSSCHHHHHHHHHHHH-HHHCHHH-HH-----------------HTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHH-HHHCHHH-HH-----------------HcCCCCC-CeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 47999999999988764 2221100 00 0011122 459999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
++.+++.++.. .+.+.. ...+..+++.+.. ..++++|+||||.+...+.....+.....+...+.++..|+|..
T Consensus 101 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 101 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp EEEEEHHHHHH-STTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred EEEecHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 99999987752 344443 3445556654321 24689999999998765332111112222346667777776321
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
..+.++++++++..+
T Consensus 175 -------------------~~~~~i~~a~t~~p~---------------------------------------------- 189 (278)
T 1iy2_A 175 -------------------KDTAIVVMAATNRPD---------------------------------------------- 189 (278)
T ss_dssp -------------------TTCCEEEEEEESCTT----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCCch----------------------------------------------
Confidence 012356666655221
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHH-HHHHHHhcCCCCCChhH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (686)
.+.|.++. ||+..+.++.++.++..+|++..+ . .+.+++++ +..|+.. + .++-.|+
T Consensus 190 ----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~-~-~G~~~~d 248 (278)
T 1iy2_A 190 ----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR-T-PGFVGAD 248 (278)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT-C-TTCCHHH
T ss_pred ----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-------------c--cCCCCcccCHHHHHHH-c-CCCCHHH
Confidence 13355655 899999999999999999986421 1 12344433 6667764 3 3334599
Q ss_pred HHHHHHHHHHHHHhc
Q 005637 595 LRSLLENILMDAMYE 609 (686)
Q Consensus 595 Lr~vIe~il~~al~e 609 (686)
|+++++++...+..+
T Consensus 249 l~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 249 LENLLNEAALLAARE 263 (278)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988776543
No 53
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.60 E-value=2e-15 Score=141.33 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=74.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|++.+.+.+.+.+... .....++||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 3689999999998887511 0113689999999999999999999987
Q ss_pred CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
+.+|+ ++|+.+... .. .... ++.+.+++|||||||.+... +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~----~~----~~~~-------~~~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA----PQ----LNDF-------IALAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS----SC----HHHH-------HHHHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc----hh----hhcH-------HHHcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 67999 999887532 11 1122 23356789999999999887 9999999996
No 54
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=3.6e-14 Score=159.39 Aligned_cols=229 Identities=15% Similarity=0.190 Sum_probs=143.9
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHH
Q 005637 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (686)
Q Consensus 269 ~el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (686)
..+.+.|.+.|+|++++++.+..++. ...++||+||||||||++|+
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~----------------------------------~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHH----------------------------------HTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHh----------------------------------cCCeeEeecCchHHHHHHHH
Confidence 44788889999999999998887774 12699999999999999999
Q ss_pred HHHHhcC--CCEEEEecccccccCcccccHHHHH--HHHHh-hcchhhHhhcCcEEEEccccccchhccccccCCCCchH
Q 005637 349 TLARYVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 349 aLA~~l~--~pfv~v~~s~l~~sgyvG~~~~~~l--~~l~~-~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
++|+.++ .+|..+.+.-.++...+|....... ...+. ...+.+ +.++|||||||+++.+.
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 9999884 4666666642222222231101000 11111 111111 14679999999998877
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~ 503 (686)
+|+.|+.+|+.+.+.+ .| .. ......++|+|+|... .
T Consensus 125 -~q~~LL~~lee~~v~i--~G-------~~--~~~~~~~iI~ATN~lp-------------------e------------ 161 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN--GA-------HV--EKIPMRLLVAASNELP-------------------E------------ 161 (500)
T ss_dssp -HHHHHHHHHHSSEEEC--SS-------SE--EECCCCEEEEEESSCC-------------------C------------
T ss_pred -HHHHHHHHHHHHhccC--CC-------Cc--CCcchhhhhhccccCC-------------------C------------
Confidence 9999999999666553 12 11 2222223466665210 0
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcCh-HHHHHHHhhhHH--------------HHHHHHHHHHhhcC
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN--------------ALGKQYRKMFQMNG 568 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~-eeL~~IL~~~l~--------------~L~kq~~~~~~~~g 568 (686)
...+.+++++||...+.+++++. ++..+|+..... +-..+++...
T Consensus 162 ----------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~---- 221 (500)
T 3nbx_X 162 ----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI---- 221 (500)
T ss_dssp ----------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----
T ss_pred ----------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----
Confidence 01245789999988899999987 677888875321 0111111111
Q ss_pred CccccCHHHHHHHHHhcC-------CCCCChhHHHHHHHHHHHHHHhc
Q 005637 569 VKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 569 v~l~~s~eAl~~La~~a~-------~~~~GAR~Lr~vIe~il~~al~e 609 (686)
..+.+++++++++++..- ..+.+.|.+..++...-..|..+
T Consensus 222 ~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 222 GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 257789999999987641 24557899888887655544443
No 55
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.59 E-value=2.5e-17 Score=194.70 Aligned_cols=224 Identities=21% Similarity=0.247 Sum_probs=152.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCcccc-ccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~-~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.++|++.+|+.|.+++..+..+.. ....+. .++.++||+||||||||++|+++|+.++.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~--------------------~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPD--------------------KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCT--------------------TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHhhhhchH--------------------HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999987742221100 000111 23478999999999999999999999999
Q ss_pred CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005637 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (686)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~ 436 (686)
+|+.++++++. ..|+|+. +..+..+|..+.. ..++||||||||.+...+.......+.....+++.||..|++.
T Consensus 538 ~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 538 NFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp CCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 99999999987 5688987 5677888876643 4679999999999987754321111223346888999998842
Q ss_pred eeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCch
Q 005637 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (686)
Q Consensus 437 ~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (686)
....+++||+|+|..+
T Consensus 612 -------------------~~~~~v~vI~tTN~~~--------------------------------------------- 627 (806)
T 1ypw_A 612 -------------------STKKNVFIIGATNRPD--------------------------------------------- 627 (806)
T ss_dssp -----------------------CCBCCCCCBSCG---------------------------------------------
T ss_pred -------------------cccCCeEEEEecCCcc---------------------------------------------
Confidence 1235688888888432
Q ss_pred HHHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhH
Q 005637 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (686)
Q Consensus 517 dl~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~ 594 (686)
.+.|++++ ||+.++.++.++.++..+|++..+... .+. .+..++.|++. ..++..+.
T Consensus 628 -----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------------~~~-~~~~l~~la~~--t~g~sgad 686 (806)
T 1ypw_A 628 -----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------------PVA-KDVDLEFLAKM--TNGFSGAD 686 (806)
T ss_dssp -----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------CCCCSCSCGG--GSSSCCHH
T ss_pred -----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC-------------CCC-cccCHHHHHHh--ccccCHHH
Confidence 13467777 999999999999999999998743221 000 01112333332 34555689
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005637 595 LRSLLENILMDAMYEIPD 612 (686)
Q Consensus 595 Lr~vIe~il~~al~e~~~ 612 (686)
|++++......++.+..+
T Consensus 687 i~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 687 LTEICQRACKLAIRESIE 704 (806)
T ss_dssp HHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888877543
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=1.5e-14 Score=151.89 Aligned_cols=172 Identities=15% Similarity=0.252 Sum_probs=114.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+.+.........+.. ....++|||||||+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINEFRN------MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHHHHH------HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHHHHH------HhcCCCEEEEcCcccc
Confidence 689999999999999999999988 88999999877641 1111110000001100 0134689999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
...+ ..|+.|+.+++.. ...+..+|++++...
T Consensus 111 ~~~~------------~~~~~l~~~l~~~--------------------~~~~~~iii~~~~~~---------------- 142 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTL--------------------YLLEKQIILASDRHP---------------- 142 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHH--------------------HHTTCEEEEEESSCG----------------
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HHCCCeEEEEecCCh----------------
Confidence 7631 1677777777610 011122333433110
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
. .+ ..+.+.|++|++ .++.+++ +.+++.+|+...+..
T Consensus 143 ---------------~--------~l-------~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~---------- 181 (324)
T 1l8q_A 143 ---------------Q--------KL-------DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE---------- 181 (324)
T ss_dssp ---------------G--------GC-------TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH----------
T ss_pred ---------------H--------HH-------HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh----------
Confidence 0 00 025578999995 7899999 999999998764321
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
. .+.++++++++|+++. .++|+|.+++++++..
T Consensus 182 -~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 182 -F--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp -T--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred -c--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 1 4679999999999973 6689999999988765
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=3.3e-14 Score=147.43 Aligned_cols=186 Identities=24% Similarity=0.316 Sum_probs=128.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
.++|++++++.+..++... ...++||+||||||||++|+++++.+.
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3799999999999887511 014799999999999999999998863
Q ss_pred ---CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 356 ---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
..++.+++++..... .....+.......+ +..+.+.||+|||+|.+... .++.|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTKP--IGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSCC--GGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhCC--cCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 247777776542100 11122222222111 22245789999999999876 89999999
Q ss_pred HhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 433 LEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
|+.. ..++.||++++...
T Consensus 134 le~~---------------------~~~~~~i~~~~~~~----------------------------------------- 151 (327)
T 1iqp_A 134 MEMF---------------------SSNVRFILSCNYSS----------------------------------------- 151 (327)
T ss_dssp HHHT---------------------TTTEEEEEEESCGG-----------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 9820 12356666655210
Q ss_pred cCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 513 v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
.+.+.+.+|+. ++.|.+++.+++.+++...+. .. .+.++++++++|++.+ +.+.
T Consensus 152 ---------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~-----------~~--~~~~~~~~~~~l~~~~---~g~~ 205 (327)
T 1iqp_A 152 ---------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAE-----------NE--GLELTEEGLQAILYIA---EGDM 205 (327)
T ss_dssp ---------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHH-----------TT--TCEECHHHHHHHHHHH---TTCH
T ss_pred ---------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHH-----------hc--CCCCCHHHHHHHHHHC---CCCH
Confidence 13467888887 789999999999988865321 11 5569999999999873 5567
Q ss_pred hHHHHHHHHHH
Q 005637 593 RGLRSLLENIL 603 (686)
Q Consensus 593 R~Lr~vIe~il 603 (686)
|.+.++++...
T Consensus 206 r~~~~~l~~~~ 216 (327)
T 1iqp_A 206 RRAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888654
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=1.5e-13 Score=134.09 Aligned_cols=185 Identities=26% Similarity=0.299 Sum_probs=124.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++|++.+++.|..++... ..+..++|+||||||||++|+++++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998887410 002579999999999999999999877432
Q ss_pred ------------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccc
Q 005637 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (686)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~ 413 (686)
++.++... ......+..++...........+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH---
Confidence 12222211 0112334445443321111235689999999998766
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.++.|++.++. ...++++|++++...
T Consensus 142 -----------~~~~l~~~l~~---------------------~~~~~~~i~~t~~~~---------------------- 167 (250)
T 1njg_A 142 -----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------- 167 (250)
T ss_dssp -----------HHHHHHHHHHS---------------------CCTTEEEEEEESCGG----------------------
T ss_pred -----------HHHHHHHHHhc---------------------CCCceEEEEEeCChH----------------------
Confidence 88999999982 012466666665210
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCcccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~ 573 (686)
.+.+.+.+|+ .++.+++++.+++.+++...+.. . .+.+
T Consensus 168 ----------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-----------~--~~~~ 205 (250)
T 1njg_A 168 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-----------E--HIAH 205 (250)
T ss_dssp ----------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------T--TCCB
T ss_pred ----------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-----------c--CCCC
Confidence 1335577775 58999999999999988753221 1 4578
Q ss_pred CHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 005637 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (686)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~vIe~il 603 (686)
++++++.|++.+ ++..|.+.+++++++
T Consensus 206 ~~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 206 EPRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp CHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 446799999888764
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.54 E-value=2e-14 Score=148.62 Aligned_cols=186 Identities=23% Similarity=0.299 Sum_probs=129.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
++|++.+++.+...+... ...++||+||||||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp SCSCHHHHHHHHTTTTTT--------------------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhCC--------------------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 799999999888766310 01469999999999999999999986
Q ss_pred -CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005637 355 -NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (686)
Q Consensus 355 -~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lL 433 (686)
+.+++.+++++..... .....+.......+ +....+.||+|||+|.+... .++.|+++|
T Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T 2chq_A 67 WRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTM 126 (319)
T ss_dssp HHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGGT
T ss_pred ccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHHH
Confidence 3457888887643211 11222333321211 11245689999999999876 889999999
Q ss_pred hCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhc
Q 005637 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (686)
Q Consensus 434 Eg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (686)
+. ...+++||++++...
T Consensus 127 e~---------------------~~~~~~~i~~~~~~~------------------------------------------ 143 (319)
T 2chq_A 127 EM---------------------YSKSCRFILSCNYVS------------------------------------------ 143 (319)
T ss_dssp SS---------------------SSSSEEEEEEESCGG------------------------------------------
T ss_pred Hh---------------------cCCCCeEEEEeCChh------------------------------------------
Confidence 82 123466677665210
Q ss_pred CchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChh
Q 005637 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (686)
Q Consensus 514 ~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR 593 (686)
.+.|.+.+|+. ++.|.+++.+++.+++...+. .. .+.+++++++.|++. .+++.|
T Consensus 144 --------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-----------~~--~~~i~~~~l~~l~~~---~~G~~r 198 (319)
T 2chq_A 144 --------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE-----------KE--GVKITEDGLEALIYI---SGGDFR 198 (319)
T ss_dssp --------GSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHH-----------TT--CCCBCHHHHHHHHHT---TTTCHH
T ss_pred --------hcchHHHhhCe-EEEecCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHH---cCCCHH
Confidence 14577888986 899999999999888865321 12 467899999999975 355679
Q ss_pred HHHHHHHHHHH
Q 005637 594 GLRSLLENILM 604 (686)
Q Consensus 594 ~Lr~vIe~il~ 604 (686)
.+.+.++....
T Consensus 199 ~~~~~l~~~~~ 209 (319)
T 2chq_A 199 KAINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887643
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.53 E-value=6.7e-14 Score=160.29 Aligned_cols=145 Identities=18% Similarity=0.276 Sum_probs=91.0
Q ss_pred hhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCC---CCCceEeeccceEEEc
Q 005637 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP---RGDNIQIDTKDILFIC 465 (686)
Q Consensus 389 ~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~---~g~~i~VdtsniIfI~ 465 (686)
+.+..+.+++|||||++.+.+. +|+.|+++|+...+.+.+.+..... .... ...++.+|+
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~---~p~~~~vI~ 257 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEP---VPCDFVLVA 257 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSC---EECCCEEEE
T ss_pred ceeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCc---cceeEEEEE
Confidence 4456778899999999999876 9999999999555544221110000 0111 123577888
Q ss_pred cCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC---eEEEccCcCh
Q 005637 466 GGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLALTE 542 (686)
Q Consensus 466 tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~---~iI~f~pLs~ 542 (686)
++|.. +. +.+.|+|++||+ ..+.|++..+
T Consensus 258 atn~~--------------------------------------~~----------~~l~~~l~~R~~v~~i~i~l~~~~~ 289 (604)
T 3k1j_A 258 AGNLD--------------------------------------TV----------DKMHPALRSRIRGYGYEVYMRTTMP 289 (604)
T ss_dssp EECHH--------------------------------------HH----------HHSCHHHHHHHHHHSEEEECCSEEE
T ss_pred ecCHH--------------------------------------HH----------hhcCHHHHHHhhccceEeecccccc
Confidence 88721 00 126799999996 5677766544
Q ss_pred H---HHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCC-------ChhHHHHHHHHHHHHH
Q 005637 543 N---QLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-------GARGLRSLLENILMDA 606 (686)
Q Consensus 543 e---eL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~-------GAR~Lr~vIe~il~~a 606 (686)
+ .+..++. .+.+++ ...+....+++++++.|+++.+.+.. ..|+|.++++....-+
T Consensus 290 ~~~~~~~~~l~----~~~~~~----~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A 355 (604)
T 3k1j_A 290 DTIENRRKLVQ----FVAQEV----KRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIA 355 (604)
T ss_dssp CCHHHHHHHHH----HHHHHH----HHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHH----hhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHH
Confidence 3 3444443 232322 22244568999999999998653222 5899999999764433
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=4.2e-15 Score=139.01 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=73.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++|++.+++.+.+.+...- ....++||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------------------------KRTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------------------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 37899999999888875110 0126899999999999999999999888 9
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
|+.++|+++.. .....++ +.+.+++|||||||.+... .|+.|+++|+
T Consensus 54 ~~~~~~~~~~~---------~~~~~~~-------~~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~ 100 (143)
T 3co5_A 54 WVSPARVEYLI---------DMPMELL-------QKAEGGVLYVGDIAQYSRN--------------IQTGITFIIG 100 (143)
T ss_dssp EECCSSTTHHH---------HCHHHHH-------HHTTTSEEEEEECTTCCHH--------------HHHHHHHHHH
T ss_pred eEEechhhCCh---------HhhhhHH-------HhCCCCeEEEeChHHCCHH--------------HHHHHHHHHH
Confidence 99999987642 1122233 2345689999999999887 8999999998
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=2.7e-14 Score=150.19 Aligned_cols=190 Identities=19% Similarity=0.210 Sum_probs=127.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcC--
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (686)
.++|++++++.|..++... ...++||+||||||||++|+++|+.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSA--------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCT--------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcC--------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3799999999888877310 014699999999999999999998864
Q ss_pred ----CCEEEEecccccccCcccccHHHHHHHHHhhcch--------hhHhhcCcEEEEccccccchhccccccCCCCchH
Q 005637 356 ----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (686)
Q Consensus 356 ----~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~--------~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (686)
..++.+++++....+.+ ...+......... ........||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIV----REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHH----TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHH----HHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 35788887664311111 1111111111000 000124569999999999877
Q ss_pred HHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005637 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (686)
Q Consensus 424 ~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~ 503 (686)
.++.|+++|+.. ..+..||++++...
T Consensus 149 -~~~~Ll~~le~~---------------------~~~~~~il~~~~~~-------------------------------- 174 (353)
T 1sxj_D 149 -AQSALRRTMETY---------------------SGVTRFCLICNYVT-------------------------------- 174 (353)
T ss_dssp -HHHHHHHHHHHT---------------------TTTEEEEEEESCGG--------------------------------
T ss_pred -HHHHHHHHHHhc---------------------CCCceEEEEeCchh--------------------------------
Confidence 899999999821 12344555554210
Q ss_pred hhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHH
Q 005637 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (686)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~ 583 (686)
.+.|.+++|+. .+.|.+++.+++.+++...+. . ..+.++++++++|++
T Consensus 175 ------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~-----------~--~~~~i~~~~l~~l~~ 222 (353)
T 1sxj_D 175 ------------------RIIDPLASQCS-KFRFKALDASNAIDRLRFISE-----------Q--ENVKCDDGVLERILD 222 (353)
T ss_dssp ------------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHH-----------T--TTCCCCHHHHHHHHH
T ss_pred ------------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHHH-----------H--hCCCCCHHHHHHHHH
Confidence 14477888986 789999999999988875221 1 146799999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHHH
Q 005637 584 KAISKNTGARGLRSLLENILMD 605 (686)
Q Consensus 584 ~a~~~~~GAR~Lr~vIe~il~~ 605 (686)
.+. .+.|.+.+.++.....
T Consensus 223 ~~~---G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 223 ISA---GDLRRGITLLQSASKG 241 (353)
T ss_dssp HTS---SCHHHHHHHHHHTHHH
T ss_pred HcC---CCHHHHHHHHHHHHHh
Confidence 743 5589988888876554
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=9.7e-14 Score=146.78 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=136.5
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
+.++|++..++.+...+..... ...+.+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999998887741100 0013689999999999999999999888
Q ss_pred -------CCCEEEEeccccccc---------------CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcc
Q 005637 355 -------NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 355 -------~~pfv~v~~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~ 412 (686)
+.+++.++|...... ...|......+..++.... ....+.||||||+|.+...+
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~- 146 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP- 146 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST-
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC-
Confidence 778999998764311 0122222232333322211 01235699999999997641
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEee-ccceEEEccCCcccHHHHHHhccccCCCCcCccc
Q 005637 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID-TKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (686)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vd-tsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~ 491 (686)
..+.++..|++.++.. . ..++++|++++..++
T Consensus 147 --------~~~~~l~~l~~~~~~~--------------------~~~~~~~~I~~t~~~~~------------------- 179 (387)
T 2v1u_A 147 --------GGQDLLYRITRINQEL--------------------GDRVWVSLVGITNSLGF------------------- 179 (387)
T ss_dssp --------THHHHHHHHHHGGGCC-------------------------CEEEEECSCSTT-------------------
T ss_pred --------CCChHHHhHhhchhhc--------------------CCCceEEEEEEECCCch-------------------
Confidence 0111344444444310 1 235777777763210
Q ss_pred ccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCe-EEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCc
Q 005637 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (686)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~ 570 (686)
...+.+.+.+|+.. .+.|++++.+++.+|+...+... ...
T Consensus 180 ----------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-----------~~~ 220 (387)
T 2v1u_A 180 ----------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-----------FNP 220 (387)
T ss_dssp ----------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH-----------BCT
T ss_pred ----------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh-----------ccC
Confidence 01245778889975 89999999999999998643210 114
Q ss_pred cccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
..+++++++.+++.+....+.+|.+.++++.+...+.
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 5689999999999866555678999999998876554
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=5.9e-13 Score=141.33 Aligned_cols=208 Identities=16% Similarity=0.186 Sum_probs=138.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCc--eEEEEccCCChHHHHHHHHHHhc-
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~--~vLL~GPPGTGKT~LAraLA~~l- 354 (686)
.++|++..++.|..++...... . .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~----~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRN----P------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHS----T------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcC----C------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999888522210 0 013 89999999999999999999888
Q ss_pred ---CCCEEEEeccccccc-----------C----cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccccc
Q 005637 355 ---NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (686)
Q Consensus 355 ---~~pfv~v~~s~l~~s-----------g----yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~ 416 (686)
+.+++.++|...... + ..+......+..+.... .....+.||+|||+|.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567889998654310 0 01111112221111110 01123569999999999554
Q ss_pred CCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeec---cceEEEccCCcccHHHHHHhccccCCCCcCccccc
Q 005637 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT---KDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (686)
Q Consensus 417 ~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vdt---sniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~ 493 (686)
.+..|+++++. ... .++.+|++++..++
T Consensus 141 --------~~~~L~~~~~~--------------------~~~~~~~~~~iI~~~~~~~~--------------------- 171 (389)
T 1fnn_A 141 --------ILSTFIRLGQE--------------------ADKLGAFRIALVIVGHNDAV--------------------- 171 (389)
T ss_dssp --------HHHHHHHHTTC--------------------HHHHSSCCEEEEEEESSTHH---------------------
T ss_pred --------HHHHHHHHHHh--------------------CCCCCcCCEEEEEEECCchH---------------------
Confidence 89999999872 111 35677777652211
Q ss_pred ccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCe-EEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccc
Q 005637 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (686)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~-iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~ 572 (686)
.+ .+.+.+.+|+.. .+.|++++.+++.+++...+... +....
T Consensus 172 ----------------~~----------~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-----------~~~~~ 214 (389)
T 1fnn_A 172 ----------------LN----------NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-----------LAEGS 214 (389)
T ss_dssp ----------------HH----------TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-----------BCTTS
T ss_pred ----------------HH----------HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-----------cCCCC
Confidence 11 134667778864 79999999999999987633211 11347
Q ss_pred cCHHHHHHHHHhcCCC------CCChhHHHHHHHHHHHHHHh
Q 005637 573 FTENALRLIAKKAISK------NTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 573 ~s~eAl~~La~~a~~~------~~GAR~Lr~vIe~il~~al~ 608 (686)
+++++++.+++.++.. .+..|.+.++++.++..+..
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 215 YSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp SCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 8999999999987544 56689999999988766544
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=1.4e-12 Score=138.59 Aligned_cols=205 Identities=24% Similarity=0.355 Sum_probs=131.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++||+.+++.+...+.....+ . .++.+++|+||||||||+||+++|+.++.++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR-------G--------------------EVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH-------T--------------------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred ccCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 589999999988877522111 0 0126899999999999999999999999888
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v 438 (686)
...++..+.. + ..+..++.. .....|+||||++.+.+. +++.|+..|+....
T Consensus 80 ~~~sg~~~~~----~----~~l~~~~~~------~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 80 HVTSGPVLVK----Q----GDMAAILTS------LERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQI 131 (334)
T ss_dssp EEEETTTCCS----H----HHHHHHHHH------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC
T ss_pred EEEechHhcC----H----HHHHHHHHH------ccCCCEEEEcchhhcCHH--------------HHHHHHHHHHhccc
Confidence 7666543321 1 122222221 124579999999999765 78888888873211
Q ss_pred ecC-CCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 439 ~vp-~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
.+. ..+ ...+.+......+.++.+++..
T Consensus 132 ~i~~~~~----~~~~~i~~~l~~~~li~at~~~----------------------------------------------- 160 (334)
T 1in4_A 132 DIMIGKG----PSAKSIRIDIQPFTLVGATTRS----------------------------------------------- 160 (334)
T ss_dssp CC-------------------CCCEEEEEESCG-----------------------------------------------
T ss_pred ceeeccC----cccccccccCCCeEEEEecCCc-----------------------------------------------
Confidence 100 000 0001111122233444332210
Q ss_pred HHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHH
Q 005637 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (686)
Q Consensus 518 l~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (686)
..+.+.+++|+...+.|++++.+++.+|+++.... ..+.++++++.+|++.+ ...+|.+.+
T Consensus 161 ---~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~~R~a~~ 221 (334)
T 1in4_A 161 ---GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------------MDVEIEDAAAEMIAKRS---RGTPRIAIR 221 (334)
T ss_dssp ---GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------------TTCCBCHHHHHHHHHTS---TTCHHHHHH
T ss_pred ---ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHhc---CCChHHHHH
Confidence 12568899999988999999999999999763221 14678999999999963 456799999
Q ss_pred HHHHHHHHHHh
Q 005637 598 LLENILMDAMY 608 (686)
Q Consensus 598 vIe~il~~al~ 608 (686)
+++++...+..
T Consensus 222 ll~~~~~~a~~ 232 (334)
T 1in4_A 222 LTKRVRDMLTV 232 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887655543
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.8e-13 Score=141.64 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=127.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
++|++.+++.|...+... ...++||+||||+|||++|+++++.+
T Consensus 23 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 70 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG--------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred HHCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 789999999998887410 01459999999999999999999886
Q ss_pred -CCCEEEEecccccccCcccccHHHHHHHHHhhcc---hhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005637 355 -NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (686)
Q Consensus 355 -~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~---~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (686)
+.+++.+++++.. +. ..++.++.... ..+....+.||+|||+|.+... .++.|+
T Consensus 71 ~~~~~~~~~~~~~~-----~~---~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~ 128 (323)
T 1sxj_B 71 YADGVLELNASDDR-----GI---DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQALR 128 (323)
T ss_dssp HHHHEEEECTTSCC-----SH---HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTTH
T ss_pred ccCCEEEecCcccc-----Ch---HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHHH
Confidence 3457778876532 11 12222222110 0011234679999999999876 889999
Q ss_pred HHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHH
Q 005637 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (686)
Q Consensus 431 ~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll 510 (686)
+.++. ...+++||++++...
T Consensus 129 ~~le~---------------------~~~~~~~il~~~~~~--------------------------------------- 148 (323)
T 1sxj_B 129 RTMEL---------------------YSNSTRFAFACNQSN--------------------------------------- 148 (323)
T ss_dssp HHHHH---------------------TTTTEEEEEEESCGG---------------------------------------
T ss_pred HHHhc---------------------cCCCceEEEEeCChh---------------------------------------
Confidence 99981 012356666655210
Q ss_pred hhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCC
Q 005637 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (686)
Q Consensus 511 ~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~ 590 (686)
.+.|.+.+|+. ++.|.+++.+++.+++...+... .+.+++++++.|++.+ ++
T Consensus 149 -----------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~l~~~~---~G 200 (323)
T 1sxj_B 149 -----------KIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLE-------------DVKYTNDGLEAIIFTA---EG 200 (323)
T ss_dssp -----------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH-------------TCCBCHHHHHHHHHHH---TT
T ss_pred -----------hchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHc---CC
Confidence 14477888876 89999999999999987633221 4568999999999974 55
Q ss_pred ChhHHHHHHHHHHH
Q 005637 591 GARGLRSLLENILM 604 (686)
Q Consensus 591 GAR~Lr~vIe~il~ 604 (686)
+.|.+.+.++....
T Consensus 201 ~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 201 DMRQAINNLQSTVA 214 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 67888888887653
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.9e-13 Score=142.87 Aligned_cols=204 Identities=20% Similarity=0.208 Sum_probs=135.0
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
+.++|+++.++.+...+...... ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55899999999999888522110 012689999999999999999999887
Q ss_pred ---------CCCEEEEeccccc-c----------------cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 355 ---------NVPFVIADATTLT-Q----------------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 355 ---------~~pfv~v~~s~l~-~----------------sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
+.+++.++|.... . .+..|......+..+..... ..+.||+|||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHH
T ss_pred HhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhc
Confidence 8899999987543 1 01112222222333222111 122399999999997
Q ss_pred hhccccccCCCCchHHHHHH-HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 409 KKAESLNISRDVSGEGVQQA-LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~-LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
... .++. |..+++- . .++.+|++++..++
T Consensus 147 ~~~-------------~~~~~l~~l~~~--------------------~--~~~~iI~~t~~~~~--------------- 176 (384)
T 2qby_B 147 KRR-------------GGDIVLYQLLRS--------------------D--ANISVIMISNDINV--------------- 176 (384)
T ss_dssp HST-------------TSHHHHHHHHTS--------------------S--SCEEEEEECSSTTT---------------
T ss_pred cCC-------------CCceeHHHHhcC--------------------C--cceEEEEEECCCch---------------
Confidence 641 1233 3344440 0 45778888773210
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhc
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~ 567 (686)
...+.+.+.+|+...+.|++++.+++.+|+...+.. .
T Consensus 177 --------------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~-----------~ 213 (384)
T 2qby_B 177 --------------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY-----------G 213 (384)
T ss_dssp --------------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-----------T
T ss_pred --------------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-----------h
Confidence 012457788898779999999999999999863321 0
Q ss_pred CCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 005637 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (686)
Q Consensus 568 gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~a 606 (686)
-....+++++++.+++.+....+++|.+.++++.+...+
T Consensus 214 ~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 113578999999999986544566899988888876544
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.7e-13 Score=143.07 Aligned_cols=221 Identities=14% Similarity=0.140 Sum_probs=139.3
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
+.|.|+-.+.|..++...... -.+.+++|+||||||||++++.+++.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 677888888888777532220 013799999999999999999999888
Q ss_pred ------CCCEEEEeccccccc---------Ccccc-----cHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 355 ------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 355 ------~~pfv~v~~s~l~~s---------gyvG~-----~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
...++.++|..+..+ .+.|. .....+...|..... ....+.||+|||||.+. .
T Consensus 74 ~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~---- 146 (318)
T 3te6_A 74 ARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S---- 146 (318)
T ss_dssp TTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C----
T ss_pred hhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c----
Confidence 345889998776421 01111 113445555553210 12346799999999997 2
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
+.++..|+++.+ .+.+++++|+.+|..++-.
T Consensus 147 --------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~-------------------- 177 (318)
T 3te6_A 147 --------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIR-------------------- 177 (318)
T ss_dssp --------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCH--------------------
T ss_pred --------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccch--------------------
Confidence 115555555433 1334578888777432100
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcChHHHHHHHhhhHHHHHHHH-------------
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQY------------- 560 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~eeL~~IL~~~l~~L~kq~------------- 560 (686)
.. +.+.+.+|+. .++.|+||+.+|+.+|++..+..+.+.+
T Consensus 178 -------------~~-------------L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~ 231 (318)
T 3te6_A 178 -------------EQ-------------INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIY 231 (318)
T ss_dssp -------------HH-------------HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEEC
T ss_pred -------------hh-------------cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 00 1244678886 5899999999999999997554431100
Q ss_pred ---H----HHH--hhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhc
Q 005637 561 ---R----KMF--QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (686)
Q Consensus 561 ---~----~~~--~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e 609 (686)
+ ... ......+.++++|+++++++.....+.||-.-+++++.+..+-.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 232 NNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 0 000 000123468999999999975555777999888888887766554
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.49 E-value=3e-13 Score=133.49 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=115.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
.+++|+||||||||++|+++++.+. .+++.+++.++... + . . .+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-~----~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-T----A----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-G----G----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-H----H----HHHh------ccCCCEEEEeccccc
Confidence 7899999999999999999998773 67888888776521 1 0 0 1110 135689999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
.... ..++.|+.+++.. .+...+.+|++++... .
T Consensus 117 ~~~~------------~~~~~l~~~l~~~-------------------~~~~~~~ii~~~~~~~-----------~---- 150 (242)
T 3bos_A 117 AGHP------------LWEEAIFDLYNRV-------------------AEQKRGSLIVSASASP-----------M---- 150 (242)
T ss_dssp TTCH------------HHHHHHHHHHHHH-------------------HHHCSCEEEEEESSCT-----------T----
T ss_pred cCCH------------HHHHHHHHHHHHH-------------------HHcCCCeEEEEcCCCH-----------H----
Confidence 7651 1377788887611 1111232444444210 0
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
.. ..+.+.+.+|+. .++.+.+++.+++.+++...+..
T Consensus 151 ------------------------~~-------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~---------- 189 (242)
T 3bos_A 151 ------------------------EA-------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM---------- 189 (242)
T ss_dssp ------------------------TT-------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----------
T ss_pred ------------------------HH-------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----------
Confidence 00 012366888885 78999999999999998763221
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
. .+.++++++++|++.. ..+.|.|.+++++++..+..
T Consensus 190 -~--~~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 190 -R--GLQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp -T--TCCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHH
T ss_pred -c--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence 1 4578999999999862 45689999999998877643
No 70
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=8.4e-13 Score=139.79 Aligned_cols=185 Identities=26% Similarity=0.309 Sum_probs=124.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC-
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (686)
++|++++++.+..++... + .+..+||+||||||||++|+++|+.++..
T Consensus 18 ~vg~~~~~~~L~~~l~~~----------~---------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~ 66 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG----------R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT----------C---------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTT
T ss_pred ccCcHHHHHHHHHHHHhC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 799999999999887410 0 02468999999999999999999887531
Q ss_pred -----------------------EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccc
Q 005637 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (686)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~ 414 (686)
++.++... ..+.+ .++.++...........+.||+|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~---- 134 (373)
T 1jr3_A 67 GITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---- 134 (373)
T ss_dssp CSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH----
T ss_pred CCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH----
Confidence 23333221 11111 12233322211111234679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccc
Q 005637 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (686)
Q Consensus 415 ~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~ 494 (686)
.++.|++.++. ...+++||++++...
T Consensus 135 ----------~~~~Ll~~le~---------------------~~~~~~~Il~~~~~~----------------------- 160 (373)
T 1jr3_A 135 ----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ----------------------- 160 (373)
T ss_dssp ----------HHHHHHHHHHS---------------------CCSSEEEEEEESCGG-----------------------
T ss_pred ----------HHHHHHHHHhc---------------------CCCceEEEEEeCChH-----------------------
Confidence 89999999982 122466666655110
Q ss_pred cccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC
Q 005637 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (686)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s 574 (686)
.+.+.+.+|+ .++.|.+++.+++.+++...+... .+.++
T Consensus 161 ---------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~-------------~~~~~ 199 (373)
T 1jr3_A 161 ---------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE-------------HIAHE 199 (373)
T ss_dssp ---------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH-------------TCCBC
T ss_pred ---------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHc-------------CCCCC
Confidence 1346677787 589999999999999887633221 46789
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
+++++.|++.+ +++.|.+.+.+++.+.
T Consensus 200 ~~a~~~l~~~~---~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 200 PRALQLLARAA---EGSLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHS---SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHH
Confidence 99999999874 5567999999888753
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.1e-12 Score=147.40 Aligned_cols=202 Identities=18% Similarity=0.201 Sum_probs=128.3
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
++|++.+++.|..++.........+.+. .+..+ ..+..++||+||||||||++|+++|+.++.++
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~---~g~~~------------~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKH---AGKDG------------SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCC---CCTTS------------TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccc---cCccC------------CCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 7999999999999986433221111110 00000 01237999999999999999999999999999
Q ss_pred EEEecccccccCcccccHHHHHHHHHhhc------chhh--------HhhcCcEEEEccccccchhccccccCCCCchHH
Q 005637 359 VIADATTLTQAGYVGEDVESILYKLLTVS------DYNV--------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (686)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a------~~~v--------e~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (686)
+.++++++... ..+...+... ...+ ....++||||||+|.+..... +
T Consensus 106 i~in~s~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~ 166 (516)
T 1sxj_A 106 LEQNASDVRSK--------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------G 166 (516)
T ss_dssp EEECTTSCCCH--------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------T
T ss_pred EEEeCCCcchH--------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------H
Confidence 99999876421 1111111100 0000 124578999999999976511 1
Q ss_pred HHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005637 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (686)
Q Consensus 425 vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~ 504 (686)
..+.|+.+++.. ...+++|++....
T Consensus 167 ~l~~L~~~l~~~---------------------~~~iIli~~~~~~---------------------------------- 191 (516)
T 1sxj_A 167 GVGQLAQFCRKT---------------------STPLILICNERNL---------------------------------- 191 (516)
T ss_dssp HHHHHHHHHHHC---------------------SSCEEEEESCTTS----------------------------------
T ss_pred HHHHHHHHHHhc---------------------CCCEEEEEcCCCC----------------------------------
Confidence 568888888710 0114444432200
Q ss_pred hHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
...+.+. |....+.|.+++.+++.+++...+... .+.+++++++.|++.
T Consensus 192 -----------------~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~-------------~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 192 -----------------PKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIRE-------------KFKLDPNVIDRLIQT 240 (516)
T ss_dssp -----------------STTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHH-------------TCCCCTTHHHHHHHH
T ss_pred -----------------ccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHH
Confidence 0113344 445589999999999999886532211 456899999999987
Q ss_pred cCCCCCChhHHHHHHHHHH
Q 005637 585 AISKNTGARGLRSLLENIL 603 (686)
Q Consensus 585 a~~~~~GAR~Lr~vIe~il 603 (686)
+ +.+.|.+.++++.+.
T Consensus 241 s---~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 241 T---RGDIRQVINLLSTIS 256 (516)
T ss_dssp T---TTCHHHHHHHHTHHH
T ss_pred c---CCcHHHHHHHHHHHH
Confidence 3 455799888888654
No 72
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.47 E-value=7.8e-14 Score=131.76 Aligned_cols=162 Identities=20% Similarity=0.250 Sum_probs=105.6
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
+.++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999988887631 012689999999999999999999886
Q ss_pred --------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHH
Q 005637 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (686)
Q Consensus 355 --------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~v 425 (686)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.||+|||+|.+...+.. ....+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~~~~~-----~ 139 (195)
T 1jbk_A 70 GEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-----A 139 (195)
T ss_dssp TCSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------CCC-----C
T ss_pred CCCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-cchHH-----H
Confidence 67888899877642 2233332 334444443211 1234569999999999765221 11112 6
Q ss_pred HHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhh
Q 005637 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (686)
Q Consensus 426 q~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~ 505 (686)
++.|..+++. .++.+|++++..++...
T Consensus 140 ~~~l~~~~~~-----------------------~~~~~i~~~~~~~~~~~------------------------------ 166 (195)
T 1jbk_A 140 GNMLKPALAR-----------------------GELHCVGATTLDEYRQY------------------------------ 166 (195)
T ss_dssp HHHHHHHHHT-----------------------TSCCEEEEECHHHHHHH------------------------------
T ss_pred HHHHHHhhcc-----------------------CCeEEEEeCCHHHHHHH------------------------------
Confidence 7778777761 13556666663211100
Q ss_pred HHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHH
Q 005637 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVL 549 (686)
Q Consensus 506 ~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL 549 (686)
..+.+.+++|+. .+.+.+++.+++.+|+
T Consensus 167 ---------------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 ---------------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---------------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ---------------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 014578999998 6899999999988876
No 73
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.47 E-value=4.5e-13 Score=147.97 Aligned_cols=175 Identities=17% Similarity=0.261 Sum_probs=117.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhH--hh-cCcEEEEc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA--AA-QQGIVYID 402 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve--~a-~~gILfID 402 (686)
.+++|+||||||||+||+++++.+ +.+++.+++..+.. ..+..+.......+. .. .+.|||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN---------DLVDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH---------HHHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH---------HHHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 689999999999999999999988 78899999876531 111111111000011 12 56899999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhcccc
Q 005637 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (686)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~ 482 (686)
|++.+...+ ..|+.|+..++.. .+ .+..+|++++...
T Consensus 202 Ei~~l~~~~------------~~q~~l~~~l~~l-------------------~~-~~~~iIitt~~~~----------- 238 (440)
T 2z4s_A 202 DVQFLIGKT------------GVQTELFHTFNEL-------------------HD-SGKQIVICSDREP----------- 238 (440)
T ss_dssp CGGGGSSCH------------HHHHHHHHHHHHH-------------------HT-TTCEEEEEESSCG-----------
T ss_pred CcccccCCh------------HHHHHHHHHHHHH-------------------HH-CCCeEEEEECCCH-----------
Confidence 999987631 1778888887611 00 1122333433110
Q ss_pred CCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC--eEEEccCcChHHHHHHHhhhHHHHHHHH
Q 005637 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (686)
Q Consensus 483 ~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~--~iI~f~pLs~eeL~~IL~~~l~~L~kq~ 560 (686)
..+ ..+.+.+++|+. .++.+.+++.+++.+|+...+..
T Consensus 239 ----------------------------~~l-------~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----- 278 (440)
T 2z4s_A 239 ----------------------------QKL-------SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----- 278 (440)
T ss_dssp ----------------------------GGC-------SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-----
T ss_pred ----------------------------HHH-------HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 000 024577888985 78999999999999998764321
Q ss_pred HHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 005637 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (686)
Q Consensus 561 ~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~ 608 (686)
. .+.++++++++|+... ..++|.|.+++++++..+..
T Consensus 279 ------~--~~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 279 ------E--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp ------H--TCCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred ------c--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 1 4678999999999863 46789999999998876643
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.44 E-value=4.3e-13 Score=158.55 Aligned_cols=218 Identities=21% Similarity=0.281 Sum_probs=145.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.|+|++.+++.|.+.+..++........ . . ..++.++||+||||||||++|+++|..++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~----l---~------------i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKA----I---G------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTS----S---C------------CCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHh----c---C------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 3899999999999999754432111000 0 0 0124789999999999999999999999999
Q ss_pred EEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005637 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (686)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~ 437 (686)
|+.+++.++. ..+.|.. +..+..+|..+. ...++++||||||.+...+.. ......+.+++.|+.+|+|..
T Consensus 266 ~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHS-SSSTTHH-HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEchHhh-hhhhhhH-HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhc
Confidence 9999999887 4566765 566777777653 246789999999999886432 122334568899999998422
Q ss_pred eecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchH
Q 005637 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (686)
Q Consensus 438 v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (686)
...++++|+++|..+
T Consensus 337 -------------------~~~~v~vI~atn~~~---------------------------------------------- 351 (806)
T 1ypw_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp -------------------TTSCCEEEEECSCTT----------------------------------------------
T ss_pred -------------------ccccEEEecccCCch----------------------------------------------
Confidence 113577787777321
Q ss_pred HHhcCCChhhhc--ccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHH
Q 005637 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (686)
Q Consensus 518 l~~~~f~PELl~--R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~L 595 (686)
.+.|.+.. ||+..+.+..++.++..+|+...+.. ..+. .+..+..++.. ..++-.+.+
T Consensus 352 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~-------------~~l~-~~~~l~~la~~--t~g~~g~dl 411 (806)
T 1ypw_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-------------MKLA-DDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT-------------SCCC-TTCCTHHHHHS--CSSCCHHHH
T ss_pred ----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc-------------CCCc-ccchhHHHHHh--hcCcchHHH
Confidence 02244444 89989999999999999988642111 1111 12224455553 334445667
Q ss_pred HHHHHHHHHHHHh
Q 005637 596 RSLLENILMDAMY 608 (686)
Q Consensus 596 r~vIe~il~~al~ 608 (686)
..++......++.
T Consensus 412 ~~l~~ea~~~a~r 424 (806)
T 1ypw_A 412 AALCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7666665555544
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=9.9e-13 Score=139.30 Aligned_cols=183 Identities=21% Similarity=0.299 Sum_probs=121.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCC--
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (686)
++||+++++.|...+... ...+++|+||||||||++|+++|+.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 689999999998887510 0146999999999999999999998732
Q ss_pred ---CEEEEecccccccCccccc-HHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005637 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (686)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~l 432 (686)
.+..+++++.. |.+ ....+..+...... + .....|++|||+|.+... .+++|++.
T Consensus 75 ~~~~~~~~~~~~~~-----~~~~ir~~i~~~~~~~~~-~-~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 133 (340)
T 1sxj_C 75 YSNMVLELNASDDR-----GIDVVRNQIKDFASTRQI-F-SKGFKLIILDEADAMTNA--------------AQNALRRV 133 (340)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCCS-S-SCSCEEEEETTGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEEEcCcccc-----cHHHHHHHHHHHHhhccc-C-CCCceEEEEeCCCCCCHH--------------HHHHHHHH
Confidence 36666665421 211 11112222211100 0 123679999999999876 89999999
Q ss_pred HhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhh
Q 005637 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (686)
Q Consensus 433 LEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (686)
||. ...++.||+++|..
T Consensus 134 le~---------------------~~~~~~~il~~n~~------------------------------------------ 150 (340)
T 1sxj_C 134 IER---------------------YTKNTRFCVLANYA------------------------------------------ 150 (340)
T ss_dssp HHH---------------------TTTTEEEEEEESCG------------------------------------------
T ss_pred Hhc---------------------CCCCeEEEEEecCc------------------------------------------
Confidence 981 11234556665521
Q ss_pred cCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCCh
Q 005637 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (686)
Q Consensus 513 v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GA 592 (686)
..+.|.+++|+. ++.|.+++.+++.+++...+. .. .+.+++++++.+++.+ ++..
T Consensus 151 --------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~-----------~~--~~~i~~~~~~~i~~~s---~G~~ 205 (340)
T 1sxj_C 151 --------HKLTPALLSQCT-RFRFQPLPQEAIERRIANVLV-----------HE--KLKLSPNAEKALIELS---NGDM 205 (340)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH-----------TT--TCCBCHHHHHHHHHHH---TTCH
T ss_pred --------cccchhHHhhce-eEeccCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCCH
Confidence 024577889986 789999999999888765221 11 4678999999999874 4445
Q ss_pred hHHHHHHHHH
Q 005637 593 RGLRSLLENI 602 (686)
Q Consensus 593 R~Lr~vIe~i 602 (686)
|.+.+.++..
T Consensus 206 r~~~~~l~~~ 215 (340)
T 1sxj_C 206 RRVLNVLQSC 215 (340)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.2e-12 Score=138.27 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=51.1
Q ss_pred CChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccC-HHHHHHHHHhcCCCCCChhHHHHHHHH
Q 005637 523 LIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLRSLLEN 601 (686)
Q Consensus 523 f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s-~eAl~~La~~a~~~~~GAR~Lr~vIe~ 601 (686)
+.|.+++|+ .++.|.+++.+++.+++...+... .+.++ +++++.|++.+ +++.|.+.+.++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE-------------RIQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH-------------TCEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc-------------CCCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 447788898 689999999999999987643221 45788 99999999874 5668999999987
Q ss_pred HHH
Q 005637 602 ILM 604 (686)
Q Consensus 602 il~ 604 (686)
+..
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=2.2e-12 Score=136.05 Aligned_cols=211 Identities=19% Similarity=0.217 Sum_probs=135.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc---
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (686)
.++|++..++.|...+..... . ..+..++|+||||||||++++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----~------------------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----E------------------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----T------------------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999988877641110 0 013689999999999999999999988
Q ss_pred ---CCCEEEEeccccccc---------------CcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhcccccc
Q 005637 355 ---NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (686)
Q Consensus 355 ---~~pfv~v~~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~ 416 (686)
+.+++.++|...... ...|......+..+..... ....+.||+|||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc----
Confidence 788999997643210 0122222232333322111 012367999999999975411
Q ss_pred CCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccc
Q 005637 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (686)
Q Consensus 417 ~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~ 496 (686)
. .++..|++.++.. ...++.+|++++..++
T Consensus 146 -~-----~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~~------------------------ 175 (386)
T 2qby_A 146 -D-----DILYKLSRINSEV--------------------NKSKISFIGITNDVKF------------------------ 175 (386)
T ss_dssp -S-----THHHHHHHHHHSC--------------------CC--EEEEEEESCGGG------------------------
T ss_pred -C-----HHHHHHhhchhhc--------------------CCCeEEEEEEECCCCh------------------------
Confidence 1 1788888888610 1234677777663210
Q ss_pred cCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccC-eEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCH
Q 005637 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (686)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~-~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~ 575 (686)
+. .+.+.+.+|+. ..+.|++++.+++.+++...+.. ......+++
T Consensus 176 -------------~~----------~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-----------~~~~~~~~~ 221 (386)
T 2qby_A 176 -------------VD----------LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-----------AFKPGVLPD 221 (386)
T ss_dssp -------------GG----------GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-----------HBCSSCSCH
T ss_pred -------------Hh----------hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-----------hccCCCCCH
Confidence 00 13355777875 48999999999999999863321 112457899
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 005637 576 NALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (686)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al 607 (686)
++++++++......+..|.+.++++.....+.
T Consensus 222 ~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 222 NVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999764434668888888887765544
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.40 E-value=6.9e-13 Score=157.60 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=112.7
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
++|+++.++.+...+.. + .+.++||+||||||||++|+++|+.+
T Consensus 172 viGr~~~i~~l~~~l~~-----------~---------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~ 219 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLR-----------R---------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGD 219 (854)
T ss_dssp CCSCHHHHHHHHHHHHC-----------S---------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhc-----------C---------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCC
Confidence 79999999988887741 0 12689999999999999999999987
Q ss_pred ------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHH
Q 005637 355 ------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (686)
Q Consensus 355 ------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (686)
+.+++.++++.+.. ..|.|.. +..+..++..... ...+.||||||+|.+...+.. .....+++
T Consensus 220 ~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~------~g~~~~~~ 289 (854)
T 1qvr_A 220 VPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA------EGAVDAGN 289 (854)
T ss_dssp SCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC-----------------------
T ss_pred CchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc------cchHHHHH
Confidence 78899999988753 3466654 4556666554321 124679999999999865221 11123778
Q ss_pred HHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHH
Q 005637 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (686)
Q Consensus 428 ~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~ 507 (686)
.|+.+++. + ++.+|++++..+..+
T Consensus 290 ~L~~~l~~--------~---------------~i~~I~at~~~~~~~--------------------------------- 313 (854)
T 1qvr_A 290 MLKPALAR--------G---------------ELRLIGATTLDEYRE--------------------------------- 313 (854)
T ss_dssp --HHHHHT--------T---------------CCCEEEEECHHHHHH---------------------------------
T ss_pred HHHHHHhC--------C---------------CeEEEEecCchHHhh---------------------------------
Confidence 88888871 1 245666666321111
Q ss_pred HHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhc
Q 005637 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (686)
Q Consensus 508 ~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a 585 (686)
+ ...|.|++||+. +.+++++.++..+|++.. ..+|.. ...+.++++++..+++.+
T Consensus 314 -----~--------~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~----~~~~~~-----~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 314 -----I--------EKDPALERRFQP-VYVDEPTVEETISILRGL----KEKYEV-----HHGVRISDSAIIAAATLS 368 (854)
T ss_dssp -----H--------TTCTTTCSCCCC-EEECCCCHHHHHHHHHHH----HHHHHH-----HTTCEECHHHHHHHHHHH
T ss_pred -----h--------ccCHHHHhCCce-EEeCCCCHHHHHHHHHhh----hhhhhh-----hcCCCCCHHHHHHHHHHH
Confidence 0 134789999985 899999999999999753 333322 125678999999888763
No 79
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.39 E-value=1.5e-12 Score=144.44 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=143.9
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHH
Q 005637 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 270 el~~~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (686)
.+.+.+.. |+||+.+|+.|.-++...-.+ .....|+||.|+||| ||.+|++
T Consensus 207 ~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~Lar~ 257 (506)
T 3f8t_A 207 TFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEILHH 257 (506)
T ss_dssp HHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHHHH
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHHHH
Confidence 37778888 999999999998887411100 011259999999999 9999999
Q ss_pred H-HHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 350 L-ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 350 L-A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
+ ++.+....+...... ...+..+. .... .. +...++.+..+.+||+|||||+++.++ +|.+
T Consensus 258 i~~~i~pR~~ft~g~~s-s~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~qsa 319 (506)
T 3f8t_A 258 VLDHLAPRGVYVDLRRT-ELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HRWA 319 (506)
T ss_dssp HHHHTCSSEEEEEGGGC-CHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HHHH
T ss_pred HHHHhCCCeEEecCCCC-CccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HHHH
Confidence 9 888754332221110 00111111 0000 11 233456677788999999999999988 9999
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
|+++||...+++. |. --..++.+|+|+|... .|.... .
T Consensus 320 LlEaMEe~~VtI~--G~----------~lparf~VIAA~NP~~--------------~yd~~~----------------s 357 (506)
T 3f8t_A 320 LMEAMDKGTVTVD--GI----------ALNARCAVLAAINPGE--------------QWPSDP----------------P 357 (506)
T ss_dssp HHHHHHHSEEEET--TE----------EEECCCEEEEEECCCC----------------CCSC----------------G
T ss_pred HHHHHhCCcEEEC--CE----------EcCCCeEEEEEeCccc--------------ccCCCC----------------C
Confidence 9999997777763 31 1234588888988532 111000 0
Q ss_pred HHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH-----HHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHH
Q 005637 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV-----QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~-----~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~ 583 (686)
+ + ...+.+++++|||.++...++...+.. .++.. +..++|....+...+...+++++.++|.+
T Consensus 358 ~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~---e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 358 I-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSY---TLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp G-G--------GCCSCHHHHTTCSEEEETTC--------------CCH---HHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred c-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCH---HHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 0 1 124789999999988777665433221 12221 33455554433245578899999998886
Q ss_pred hc---------------CCCCCChhHHHHHHHHHHHHHHhcCC
Q 005637 584 KA---------------ISKNTGARGLRSLLENILMDAMYEIP 611 (686)
Q Consensus 584 ~a---------------~~~~~GAR~Lr~vIe~il~~al~e~~ 611 (686)
.. ...+...|.+..++.- ..+.+.+.
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl--A~A~A~L~ 466 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERL--AKAHARMR 466 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH--HHHHHHHT
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHH--HHHHHHHc
Confidence 41 1234557999998864 44444433
No 80
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.39 E-value=2e-13 Score=151.81 Aligned_cols=169 Identities=24% Similarity=0.332 Sum_probs=106.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
|+|++..++.+...+.. + .+.++||+||||||||++|+++|+.+
T Consensus 182 iiGr~~~i~~l~~~l~r-----------~---------------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~ 229 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSR-----------R---------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (468)
T ss_dssp CCCCHHHHHHHHHHHHC-----------S---------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred ccCcHHHHHHHHHHHhc-----------c---------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999888751 0 13689999999999999999999986
Q ss_pred ------CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 355 ------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 355 ------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
+.+|+.++++ ..|.|.. +..+..++.... ...++||||| ... + +++.
T Consensus 230 ~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~---------~-----a~~~ 282 (468)
T 3pxg_A 230 VPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASNI 282 (468)
T ss_dssp SCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C---------------------
T ss_pred CChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch---------h-----HHHH
Confidence 7789988887 3355543 233444444322 2457899999 111 1 7788
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
|++.|+. | ++.+|+++|..+..+.+
T Consensus 283 L~~~L~~--------g---------------~v~vI~at~~~e~~~~~-------------------------------- 307 (468)
T 3pxg_A 283 LKPSLAR--------G---------------ELQCIGATTLDEYRKYI-------------------------------- 307 (468)
T ss_dssp -CCCTTS--------S---------------SCEEEEECCTTTTHHHH--------------------------------
T ss_pred HHHhhcC--------C---------------CEEEEecCCHHHHHHHh--------------------------------
Confidence 8888871 1 36678887743321111
Q ss_pred HHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
.+.|.|++||. +|.+.+++.+++.+|++..+.. |.. ...+.++++++++++..
T Consensus 308 -------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~----~~~-----~~~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 308 -------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRDR----YEA-----HHRVSITDDAIEAAVKL 360 (468)
T ss_dssp -------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTT----SGG-----GSSCSCCHHHHHHHHHH
T ss_pred -------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHH----HHH-----hcCCCCCHHHHHHHHHH
Confidence 14578999998 5999999999999999753221 111 12456777777777764
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.37 E-value=4.6e-12 Score=148.18 Aligned_cols=210 Identities=20% Similarity=0.301 Sum_probs=134.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 274 ~Ld~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.++. ++|++..++.+...+... .+.++||+||||||||++|+++|+.
T Consensus 184 ~~d~-~iGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 184 GIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CSCC-CCSCHHHHHHHHHHHTSS--------------------------------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCC-ccCCHHHHHHHHHHHhcc--------------------------------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3444 799999999988877410 1378999999999999999999987
Q ss_pred c----------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCch
Q 005637 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (686)
Q Consensus 354 l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (686)
+ +.+++.+++..+.. ..|.|.. +..+..++.... ...++||||||+|.+...+.. +...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-----~~~~ 300 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGGQ 300 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTSCCS-----SSCH
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhcCCC-----Ccch
Confidence 6 55678888877653 3466654 566666665433 235789999999999765221 1112
Q ss_pred HHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005637 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (686)
Q Consensus 423 e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~ 502 (686)
..+++.|..+++ ..++.+|++++..++
T Consensus 301 ~~~~~~L~~~l~-----------------------~~~~~~I~at~~~~~------------------------------ 327 (758)
T 1r6b_X 301 VDAANLIKPLLS-----------------------SGKIRVIGSTTYQEF------------------------------ 327 (758)
T ss_dssp HHHHHHHSSCSS-----------------------SCCCEEEEEECHHHH------------------------------
T ss_pred HHHHHHHHHHHh-----------------------CCCeEEEEEeCchHH------------------------------
Confidence 335566655555 123566777663211
Q ss_pred hhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHH
Q 005637 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (686)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La 582 (686)
...+ ...|.|.+||+ .+.+.+++.++..+|+...+ ++|... ..+.+++++++.++
T Consensus 328 -------~~~~--------~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~----~~~~~~-----~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 328 -------SNIF--------EKDRALARRFQ-KIDITEPSIEETVQIINGLK----PKYEAH-----HDVRYTAKAVRAAV 382 (758)
T ss_dssp -------HCCC--------CCTTSSGGGEE-EEECCCCCHHHHHHHHHHHH----HHHHHH-----HTCCCCHHHHHHHH
T ss_pred -------hhhh--------hcCHHHHhCce-EEEcCCCCHHHHHHHHHHHH----HHHHHh-----cCCCCCHHHHHHHH
Confidence 0111 13477899998 79999999999999998633 333221 15678999998888
Q ss_pred HhcC---CCCCChhHHHHHHHHHHH
Q 005637 583 KKAI---SKNTGARGLRSLLENILM 604 (686)
Q Consensus 583 ~~a~---~~~~GAR~Lr~vIe~il~ 604 (686)
..+. ...+-...+..++.....
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred HHhhhhcccccCchHHHHHHHHHHH
Confidence 7532 111112345555555443
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.35 E-value=1.4e-12 Score=123.29 Aligned_cols=117 Identities=26% Similarity=0.313 Sum_probs=77.2
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc--
Q 005637 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (686)
+.++|++..++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999888877631 012689999999999999999999887
Q ss_pred --------CCCEEEEecccccc-cCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHH
Q 005637 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (686)
Q Consensus 355 --------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~v 425 (686)
+.+++.+++..+.. ..+.+.. ...+..++..... ...+.+|||||+|.+...+....... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~-----~~ 140 (187)
T 2p65_A 70 GDVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEGAL-----DA 140 (187)
T ss_dssp TCSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTTSC-----CT
T ss_pred cCCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccccccch-----HH
Confidence 67788888876642 1233322 3334444332211 12456999999999975422111112 27
Q ss_pred HHHHHHHHh
Q 005637 426 QQALLKMLE 434 (686)
Q Consensus 426 q~~LL~lLE 434 (686)
++.|+.+++
T Consensus 141 ~~~l~~~~~ 149 (187)
T 2p65_A 141 GNILKPMLA 149 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 788888887
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=1.2e-11 Score=131.34 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=103.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEecccccccCcccccHHHHHHHHHhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (686)
..+||+||||+|||++|+++|+.+... +..++..+- ....+. ..++++...
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~i---~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLGV---DAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBCH---HHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCCH---HHHHHHHHH
Confidence 569999999999999999999987432 333333210 011222 234444443
Q ss_pred cchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEcc
Q 005637 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (686)
Q Consensus 387 a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~t 466 (686)
.......+...|++|||+|++... .+++||+.||. ...+++||++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 322111245689999999999876 89999999982 1234667776
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHH
Q 005637 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (686)
Q Consensus 467 gn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~ 546 (686)
++.. ..+.|.+++|.. ++.|.+++.+++.
T Consensus 145 t~~~--------------------------------------------------~~l~~ti~SRc~-~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 145 TREP--------------------------------------------------ERLLATLRSRCR-LHYLAPPPEQYAV 173 (334)
T ss_dssp ESCG--------------------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred eCCh--------------------------------------------------HhCcHHHhhcce-eeeCCCCCHHHHH
Confidence 5521 025577889985 7999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHH
Q 005637 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (686)
Q Consensus 547 ~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vI 599 (686)
+++... ..+++++++.+++.+ ++..|...+.+
T Consensus 174 ~~L~~~------------------~~~~~~~~~~l~~~s---~G~~r~a~~~l 205 (334)
T 1a5t_A 174 TWLSRE------------------VTMSQDALLAALRLS---AGSPGAALALF 205 (334)
T ss_dssp HHHHHH------------------CCCCHHHHHHHHHHT---TTCHHHHHHTT
T ss_pred HHHHHh------------------cCCCHHHHHHHHHHc---CCCHHHHHHHh
Confidence 888641 257888888888763 33445444443
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.32 E-value=1.1e-12 Score=153.89 Aligned_cols=169 Identities=23% Similarity=0.318 Sum_probs=109.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc----
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (686)
|+|++..++.+...+.. + .+.++||+||||||||++|+++|+.+
T Consensus 182 iiG~~~~i~~l~~~l~~-----------~---------------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~ 229 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSR-----------R---------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (758)
T ss_dssp CCCCHHHHHHHHHHHHC-----------S---------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred ccCchHHHHHHHHHHhC-----------C---------------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 79999999999988751 0 13789999999999999999999986
Q ss_pred ------CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHH
Q 005637 355 ------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (686)
Q Consensus 355 ------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (686)
+.+++.+++ ...|.|+. +..+..++..+. ...++||||| ... + +++.
T Consensus 230 ~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~---------~-----~~~~ 282 (758)
T 3pxi_A 230 VPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASNI 282 (758)
T ss_dssp SCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C---------------------
T ss_pred CChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch---------h-----HHHH
Confidence 778888887 23456654 445556655432 2467999999 111 1 7788
Q ss_pred HHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHH
Q 005637 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (686)
Q Consensus 429 LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ 508 (686)
|+++|+. ..+.+|+++|..+..+.+
T Consensus 283 L~~~l~~-----------------------~~v~~I~at~~~~~~~~~-------------------------------- 307 (758)
T 3pxi_A 283 LKPSLAR-----------------------GELQCIGATTLDEYRKYI-------------------------------- 307 (758)
T ss_dssp -CCCTTS-----------------------SSCEEEEECCTTTTHHHH--------------------------------
T ss_pred HHHHHhc-----------------------CCEEEEeCCChHHHHHHh--------------------------------
Confidence 8888871 136677787744322211
Q ss_pred HHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHh
Q 005637 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (686)
Q Consensus 509 ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~ 584 (686)
.+.|.|++||. +|.+++++.+++.+|++..+ .+|.. ...+.+++++++.+++.
T Consensus 308 -------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~----~~~~~-----~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 308 -------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLR----DRYEA-----HHRVSITDDAIEAAVKL 360 (758)
T ss_dssp -------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT----TTSGG-----GSSCSCCHHHHHHHHHH
T ss_pred -------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHH----HHHHH-----hcCCCCCHHHHHHHHHH
Confidence 14588999994 69999999999999997532 22111 23566888888888775
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=7.1e-12 Score=132.28 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=99.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhc------
Q 005637 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (686)
Q Consensus 281 Gqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l------ 354 (686)
||+++++.|..++.... ..++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--------------------------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--------------------------------GISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTCS--------------------------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCCC--------------------------------CcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 78889998888885100 1589999999999999999999863
Q ss_pred CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
...++.++++. ...+.+ .++++...+......+...|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~----~~~~id---~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEG----ENIGID---DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSS----SCBCHH---HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCc----CCCCHH---HHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 34677777642 122322 23344333221111234579999999999887 8999999999
Q ss_pred CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcC
Q 005637 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (686)
Q Consensus 435 g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (686)
. ...+++||++++..
T Consensus 108 e---------------------p~~~t~fIl~t~~~-------------------------------------------- 122 (305)
T 2gno_A 108 E---------------------PPEYAVIVLNTRRW-------------------------------------------- 122 (305)
T ss_dssp S---------------------CCTTEEEEEEESCG--------------------------------------------
T ss_pred C---------------------CCCCeEEEEEECCh--------------------------------------------
Confidence 2 12346677765521
Q ss_pred chHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhh
Q 005637 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (686)
Q Consensus 515 ~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~ 551 (686)
..+.|.+++| ++.|.+++++++.+++.+
T Consensus 123 ------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 ------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred ------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 1256889999 899999999999998876
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.09 E-value=1.3e-09 Score=116.55 Aligned_cols=221 Identities=19% Similarity=0.142 Sum_probs=127.3
Q ss_pred ccccChHHHHHHHHHHH-HhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEE--EccCCChHHHHHHHHHHh
Q 005637 277 KFVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 277 ~~VvGqd~aK~~L~~aV-~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL--~GPPGTGKT~LAraLA~~ 353 (686)
..++|.+..++.|..++ ..... +. ...+.++++ +||||+|||++++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~----~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS----GA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT----SS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhc----CC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 34799999999888877 41100 00 001268889 999999999999999877
Q ss_pred c---------CCCEEEEeccccccc-----------C----cccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 354 V---------NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 354 l---------~~pfv~v~~s~l~~s-----------g----yvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
+ +.+++.++|...... + ..+.+....+..+...- .....+.||+|||+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 76 VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHS
T ss_pred HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEEeCHHHHhh
Confidence 6 446778887432110 0 00111111111111110 0113467999999999865
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeec--cceEEEccCCcccHHHHHHhccccCCCCc
Q 005637 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT--KDILFICGGAFVDIEKTISERRQDSSIGF 487 (686)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~Vdt--sniIfI~tgn~~~Lek~i~~r~~~~~igf 487 (686)
... ....++..|++.++.. ..+. .++.+|++++..++.+.+..
T Consensus 153 ~~~--------~~~~~l~~l~~~~~~~------------------~~~~~~~~v~lI~~~~~~~~~~~l~~--------- 197 (412)
T 1w5s_A 153 SPR--------IAAEDLYTLLRVHEEI------------------PSRDGVNRIGFLLVASDVRALSYMRE--------- 197 (412)
T ss_dssp CTT--------SCHHHHHHHHTHHHHS------------------CCTTSCCBEEEEEEEEETHHHHHHHH---------
T ss_pred ccC--------cchHHHHHHHHHHHhc------------------ccCCCCceEEEEEEeccccHHHHHhh---------
Confidence 200 0122677777777610 0012 45777777653222111110
Q ss_pred CcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHhhc
Q 005637 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (686)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~ 567 (686)
..+.+.+|+...+.|.+|+.+++.+++...+...
T Consensus 198 -----------------------------------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~----------- 231 (412)
T 1w5s_A 198 -----------------------------------KIPQVESQIGFKLHLPAYKSRELYTILEQRAELG----------- 231 (412)
T ss_dssp -----------------------------------HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-----------
Confidence 0133555665559999999999999987532211
Q ss_pred CCccccCHHHHHHHHHhcCCCC---CChhHHHHHHHHHHHHHH
Q 005637 568 GVKLHFTENALRLIAKKAISKN---TGARGLRSLLENILMDAM 607 (686)
Q Consensus 568 gv~l~~s~eAl~~La~~a~~~~---~GAR~Lr~vIe~il~~al 607 (686)
+....+++++++.+++.+.... +..|.+..+++..+..+.
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAE 274 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 1234588999999998754222 457888888876655443
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.77 E-value=2e-08 Score=130.74 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=98.8
Q ss_pred CceEEEEccCCChHHHHH-HHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcc---hhh----HhhcCcEEEE
Q 005637 330 KSNILLMGPTGSGKTLLA-KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNV----AAAQQGIVYI 401 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LA-raLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~---~~v----e~a~~gILfI 401 (686)
..++||+||||||||++| +++++..+.+++.++++..+.+. .....+...+.... +.+ ....++||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 479999999999999999 55566557788888887765321 11122222211110 100 0234579999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccc
Q 005637 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (686)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~ 481 (686)
|||+....++. ..+.+++.|.++|| .|...+.+.. ..+...++.||+|+|..+
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le--------~gg~yd~~~~-~~~~~~~i~lIaA~Npp~---------- 1395 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLME--------KQGFWKTPEN-KWVTIERIHIVGACNPPT---------- 1395 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHH--------TSSEECTTTC-CEEEEESEEEEEEECCTT----------
T ss_pred ccccccccccc--------CchhHHHHHHHHHh--------cCCEEEcCCC-cEEEecCEEEEEecCCCc----------
Confidence 99998544321 11237888888888 2222222211 133447899999988431
Q ss_pred cCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 482 DSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 482 ~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
+-| +..+.|.|++|+ .++.++.++.+++.+|+...+..
T Consensus 1396 --~gG---------------------------------R~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1396 --DPG---------------------------------RIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp --STT---------------------------------CCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred --cCC---------------------------------CccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 001 012568899999 58999999999999999875543
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.67 E-value=4.1e-08 Score=93.99 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc----CCCEEEEecccccccCcccccHHHHHHHHHhhcc---hhhHhhcCcEEEEcc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDE 403 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~---~~ve~a~~gILfIDE 403 (686)
.+++|+||||||||+|+++++..+ +..++.+++.++.. .+...+.... ..-....+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 689999999999999999999877 44555566655431 1111111100 001123568999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
++..... ...++.|..+++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9854221 115566777775
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.65 E-value=9.6e-07 Score=91.69 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.++|.++..+.|..++.. ...++++||+|+|||+|++.+++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-- 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP-- 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--
T ss_pred hcCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--
Confidence 369999999998887741 14799999999999999999998875
Q ss_pred EEEEeccc
Q 005637 358 FVIADATT 365 (686)
Q Consensus 358 fv~v~~s~ 365 (686)
++.+++..
T Consensus 57 ~~~~~~~~ 64 (350)
T 2qen_A 57 GILIDCRE 64 (350)
T ss_dssp EEEEEHHH
T ss_pred cEEEEeec
Confidence 66677653
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.48 E-value=1.2e-07 Score=92.13 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=31.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~ 367 (686)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999887 5678888887653
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.39 E-value=3.2e-07 Score=86.51 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=52.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEcccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl 407 (686)
..++|+||+|+|||+|+++++..+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcccc
Confidence 689999999999999999999887 666777887766521 00 124579999999987
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005637 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
... .++.|+.+++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 654 4666777766
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.37 E-value=1.2e-06 Score=92.57 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=104.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---C-CCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---N-VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~-~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDk 406 (686)
..+||+||+|+||++.++.+++.+ + .++..+. +. + ..+....+..+ ...+. -+..-|++|||+|.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~--~--~~~~~~l~~~~-~~~pl---f~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID--P--NTDWNAIFSLC-QAMSL---FASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC--T--TCCHHHHHHHH-HHHHH---CCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec--C--CCCHHHHHHHh-cCcCC---ccCCeEEEEECCCC
Confidence 689999999999999999998765 2 1222221 11 1 12322322222 22111 23457999999999
Q ss_pred -cchhccccccCCCCchHHHHHHHHHHHhCceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHHHHhccccCCC
Q 005637 407 -ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (686)
Q Consensus 407 -l~~~r~~~~~~~d~~~e~vq~~LL~lLEg~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~i~~r~~~~~i 485 (686)
+..+ .+++|++.+|. ...+++||++++..+ +
T Consensus 88 kl~~~--------------~~~aLl~~le~---------------------p~~~~~~il~~~~~~--~----------- 119 (343)
T 1jr3_D 88 GPNAA--------------INEQLLTLTGL---------------------LHDDLLLIVRGNKLS--K----------- 119 (343)
T ss_dssp CCCTT--------------HHHHHHHHHTT---------------------CBTTEEEEEEESCCC--T-----------
T ss_pred CCChH--------------HHHHHHHHHhc---------------------CCCCeEEEEEcCCCC--h-----------
Confidence 8766 89999999982 112344444433110 0
Q ss_pred CcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHHHHHHHHHHHh
Q 005637 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (686)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~L~kq~~~~~~ 565 (686)
...... +.+.+.+|. .++.|.+++.+++.+.+...+.+
T Consensus 120 -----------------~~~~~k--------------~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~---------- 157 (343)
T 1jr3_D 120 -----------------AQENAA--------------WFTALANRS-VQVTCQTPEQAQLPRWVAARAKQ---------- 157 (343)
T ss_dssp -----------------TTTTSH--------------HHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHH----------
T ss_pred -----------------hhHhhH--------------HHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH----------
Confidence 000001 224455665 37999999999999888753222
Q ss_pred hcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 005637 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (686)
Q Consensus 566 ~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~ 604 (686)
. .+.++++++++|++.. +.+.|.+.+.++++..
T Consensus 158 -~--g~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 158 -L--NLELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp -T--TCEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred -c--CCCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 1 6789999999999963 4567999999998754
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.37 E-value=5.6e-06 Score=85.96 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=30.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..++++||+|+|||+|++.+++.+...++.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 379999999999999999999988777778887643
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.33 E-value=5.5e-06 Score=108.25 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=52.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.+.++.||+|||||++++++|+.+|.+++.++|++-... ..+...+..+ ...++++++|||+++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 578999999999999999999999999999999876532 2223333221 123579999999999887
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.24 E-value=1.7e-06 Score=113.70 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=96.3
Q ss_pred CceEEEEccCCChHHHHHHH-HHHhcCCCEEEEecccccccCcccccHHHHHHHHHhh------cc--hhhH----hhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTV------SD--YNVA----AAQQ 396 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAra-LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~------a~--~~ve----~a~~ 396 (686)
..++||+||||||||.+++. +++..+.+++.++++.-+.+ ..+...+.. .+ +.+- ..+.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 36899999999999977655 45554667888888876532 222222221 10 1111 1234
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh-CceeecCCCCCccCCCCCceEeeccceEEEccCCcccHHHH
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE-g~~v~vp~~G~~~~~~g~~i~VdtsniIfI~tgn~~~Lek~ 475 (686)
.|+||||++....+.. ..+.+...|.++|| |+... .... -.+...++.||+|.|..+
T Consensus 1376 ~VlFiDDiNmp~~D~y--------GtQ~~ielLrqlld~~g~yd---------~~~~-~~~~i~d~~~vaamnPp~---- 1433 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKY--------GTQRVITFIRQMVEKGGFWR---------TSDH-TWIKLDKIQFVGACNPPT---- 1433 (3245)
T ss_dssp EEEEETTTTCCCCCTT--------SCCHHHHHHHHHHHHSEEEE---------TTTT-EEEEESSEEEEEEECCTT----
T ss_pred EEEEecccCCCCcccc--------ccccHHHHHHHHHHcCCeEE---------CCCC-eEEEecCeEEEEEcCCCC----
Confidence 6999999998554311 11238888889998 44332 2111 124457899999877431
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHHHHHhhcCchHHHhcCCChhhhcccCeEEEccCcChHHHHHHHhhhHHH
Q 005637 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (686)
Q Consensus 476 i~~r~~~~~igf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PELl~R~~~iI~f~pLs~eeL~~IL~~~l~~ 555 (686)
+-| +..+.|.|++||. ++.++.++.+++..|....+..
T Consensus 1434 --------~gG---------------------------------r~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1434 --------DAG---------------------------------RVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp --------STT---------------------------------CCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred --------CCC---------------------------------CccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 000 0125688999998 5899999999999998764433
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.23 E-value=3e-06 Score=87.86 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.+++|+||||||||++|++||+.+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 67999999999999999999997643
No 97
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.18 E-value=3.5e-06 Score=105.87 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=86.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhh-------hccc-----ccCCCCCCCCCCCCCcc-cc-c-cCceEEEEccCCChH
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNES-------SQKR-----SAGESSSCTTDGVDDDT-VE-L-EKSNILLMGPTGSGK 343 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~-------~~r~-----~~~~~~~~~~~~~~~~~-v~-~-~~~~vLL~GPPGTGK 343 (686)
|-|.+++|+.+.+++..+.+..+... ..+. +.|.. +.|..- .. + ..+.+|++|||||||
T Consensus 1022 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~------glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1022 MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSL------SLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCH------HHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCch------hHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 67999999999999986664322110 0000 01100 000000 00 1 125699999999999
Q ss_pred HHHHHHHHHhc---CCCEEEEecccccc-----------cCcccc----cHHHHHHHHHhhcchhhHhhcCcEEEEcccc
Q 005637 344 TLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (686)
Q Consensus 344 T~LAraLA~~l---~~pfv~v~~s~l~~-----------sgyvG~----~~~~~l~~l~~~a~~~ve~a~~gILfIDEID 405 (686)
|+||++++.+. +.|-+.++..+..+ ..|+++ + ++.++.++..++ ...+++||+||++
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar----~~~~~~i~~d~~~ 1170 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR----SGAVDVIVVDSVA 1170 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----HTCCSEEEESCGG
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----hcCCeEEEeCchH
Confidence 99999997655 56666666655321 345555 3 566777766543 3578999999999
Q ss_pred ccchhccccccCC--CC-chHHHHHHHHHHHhC
Q 005637 406 KITKKAESLNISR--DV-SGEGVQQALLKMLEG 435 (686)
Q Consensus 406 kl~~~r~~~~~~~--d~-~~e~vq~~LL~lLEg 435 (686)
.|.+.++..+... +. -.+++.+++|.-|++
T Consensus 1171 al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1171 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp GCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999855221112 21 123467777777774
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.06 E-value=3.7e-07 Score=96.13 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=30.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----CCEEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~v~~s~l~ 367 (686)
.+++|+||||||||+||+++|+.+. .+++.+++.++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 6899999999999999999987654 677777776553
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.90 E-value=5.4e-06 Score=83.00 Aligned_cols=77 Identities=12% Similarity=0.298 Sum_probs=48.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.++||+||||||||++|.++|+.+....+....+. ..+ . +.. .....||+|||+|.-..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-~----------l~~------l~~~kIiiLDEad~~~~- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-W----------LEP------LTDTKVAMLDDATTTCW- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-G----------GGG------GTTCSSEEEEEECHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-h----------hcc------cCCCCEEEEECCCchhH-
Confidence 57999999999999999999999865432211100 000 0 000 01235899999995322
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeec
Q 005637 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (686)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~lLEg~~v~v 440 (686)
+.+...+..+|||..+.+
T Consensus 118 ------------~~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 118 ------------TYFDTYMRNALDGNPISI 135 (212)
T ss_dssp ------------HHHHHHCHHHHHTCCEEE
T ss_pred ------------HHHHHHHHHHhCCCcccH
Confidence 125667888899865543
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.75 E-value=3e-05 Score=82.55 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=43.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~ 408 (686)
..++|+||||||||+||.++|...+. .|+.....+... .+. .+.+..+..+.... .. .+ +|+|||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l----~~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAM----LQ-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHH----HH-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHH----hh-CC-EEEEecccccc
Confidence 56799999999999999999876443 466662232221 121 23344443333321 11 23 99999999996
Q ss_pred hh
Q 005637 409 KK 410 (686)
Q Consensus 409 ~~ 410 (686)
..
T Consensus 196 ~~ 197 (331)
T 2vhj_A 196 GA 197 (331)
T ss_dssp --
T ss_pred cc
Confidence 64
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.71 E-value=0.00039 Score=92.02 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=50.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccchh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
.+..+.||+|||||++++.+|+.+|.+++.++|++-... ..+..+|... ...++..++|||+++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 456789999999999999999999999999999865431 2233333221 124678999999999876
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.36 E-value=0.0014 Score=63.39 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
.+.|+||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999998876443
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.32 E-value=0.00024 Score=90.59 Aligned_cols=79 Identities=22% Similarity=0.216 Sum_probs=49.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---Cccc-----------ccHHHHHHHHHhhcchhh
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVG-----------EDVESILYKLLTVSDYNV 391 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG-----------~~~~~~l~~l~~~a~~~v 391 (686)
++.+++|+||||||||+||.+++... +.....+++...... ...| ...+..+..+. ..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~----~lv 1501 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD----ALA 1501 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH----HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH----HHH
Confidence 35799999999999999999996654 455666666543210 0111 01122222222 233
Q ss_pred HhhcCcEEEEccccccchhc
Q 005637 392 AAAQQGIVYIDEVDKITKKA 411 (686)
Q Consensus 392 e~a~~gILfIDEIDkl~~~r 411 (686)
+...+.+|+|||++.+.+.+
T Consensus 1502 r~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHH
T ss_pred hcCCCCEEEEcChhHhcccc
Confidence 44678999999999887743
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00018 Score=67.92 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..++|.|+||+|||++|+.|++.++.+|+.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 57899999999999999999999998888766543
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00017 Score=68.67 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..++|+|+||+|||++|+.||+.++.+|+..|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999887443
No 106
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.11 E-value=0.00053 Score=67.79 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=45.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh--------cC-CCEEEEecccccccCcc-------------cccH-HHHHHHHHhhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY--------VN-VPFVIADATTLTQAGYV-------------GEDV-ESILYKLLTVS 387 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~--------l~-~pfv~v~~s~l~~sgyv-------------G~~~-~~~l~~l~~~a 387 (686)
...|++|+||+|||++|..++.. .+ .+++..++.++.. +++ ++.. ...+.+.+..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 57899999999999999886433 24 6666666665542 121 1100 0122222111
Q ss_pred chhhHhhcCcEEEEccccccchh
Q 005637 388 DYNVAAAQQGIVYIDEVDKITKK 410 (686)
Q Consensus 388 ~~~ve~a~~gILfIDEIDkl~~~ 410 (686)
....++||+|||++.+.+.
T Consensus 84 ----~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 84 ----PENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ----GGGTTCEEEETTGGGTSBC
T ss_pred ----cccCceEEEEEChhhhccC
Confidence 1235789999999999654
No 107
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00021 Score=69.37 Aligned_cols=32 Identities=50% Similarity=0.750 Sum_probs=28.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..++|+||||+|||++++.||+.++.+++..|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 58899999999999999999999998886443
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.06 E-value=0.0017 Score=71.60 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=51.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CC-CEEEEecccccc------cCcccccHHHHHHHHHhhcch-----------
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PFVIADATTLTQ------AGYVGEDVESILYKLLTVSDY----------- 389 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~-pfv~v~~s~l~~------sgyvG~~~~~~l~~l~~~a~~----------- 389 (686)
.++++.|+||||||+++.+++..+ +. .++.+..+.... .+..+.. +..++.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T----~h~~~~~~~~~~~~~~~~~~~ 121 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEAST----IHSILKINPVTYEENVLFEQK 121 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEE----HHHHHTEEEEECSSCEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhh----HHHHhccCcccccccchhccc
Confidence 489999999999999999998776 33 344333322110 0111111 1222221100
Q ss_pred -hhHhhcCcEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 390 -NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 390 -~ve~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
........+|++||+..+... .+..|++.+.
T Consensus 122 ~~~~~~~~~~iiiDE~~~~~~~--------------~~~~l~~~~~ 153 (459)
T 3upu_A 122 EVPDLAKCRVLICDEVSMYDRK--------------LFKILLSTIP 153 (459)
T ss_dssp SCCCCSSCSEEEESCGGGCCHH--------------HHHHHHHHSC
T ss_pred ccccccCCCEEEEECchhCCHH--------------HHHHHHHhcc
Confidence 000123579999999998776 8888888886
No 109
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.0017 Score=56.98 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=64.5
Q ss_pred cCcChHHHHHHHhhhHHHHHHHHHHHHhhcCCccccCHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhcCCCCcCCC
Q 005637 538 LALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGD 617 (686)
Q Consensus 538 ~pLs~eeL~~IL~~~l~~L~kq~~~~~~~~gv~l~~s~eAl~~La~~a~~~~~GAR~Lr~vIe~il~~al~e~~~~~~g~ 617 (686)
+.|+++|..+|.+++ |..+..+........+.++++|+..|.+. |+.+.|+|+|++.|..++..+..++....
T Consensus 1 sGYt~~EK~~IAk~~---LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~--- 73 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRH---LLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDK--- 73 (94)
T ss_dssp CCCCHHHHHHHHHHT---HHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred CCCCHHHHHHHHHHh---ccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcC---
Confidence 368999999999985 33333333444555789999999999997 99999999999999999999988876411
Q ss_pred CccceEEEchhccc
Q 005637 618 EVIDAVVVDEEAVG 631 (686)
Q Consensus 618 ~~i~~vlVdee~v~ 631 (686)
....+.||.+.+.
T Consensus 74 -~~~~v~v~~~~l~ 86 (94)
T 1qzm_A 74 -SLKHIEINGDNLH 86 (94)
T ss_dssp -TCCCEEECTTTTH
T ss_pred -CCCCeeECHHHHH
Confidence 1134667765543
No 110
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00047 Score=64.20 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.++|.|+||+||||+|+.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6889999999999999999999998886444
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.95 E-value=0.0015 Score=64.59 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA 351 (686)
...++|+||+|+|||+|++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3678899999999999999998
No 112
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00047 Score=64.70 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=27.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.+++|.|+||+|||++|+.||+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999998864
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.87 E-value=0.0004 Score=65.73 Aligned_cols=29 Identities=41% Similarity=0.691 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.++|.|+||+|||++|+.||+.++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999987763
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.86 E-value=0.0011 Score=64.44 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=18.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++||+|+|||+++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999665543
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.85 E-value=0.00048 Score=65.50 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..|+|+|+||+|||++|+.||+.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4689999999999999999999999887643
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.00048 Score=65.39 Aligned_cols=30 Identities=43% Similarity=0.630 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++|+|+||+|||++++.|++.++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 679999999999999999999999877753
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00053 Score=65.26 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=27.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 678999999999999999999999887764
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.81 E-value=0.00055 Score=64.21 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=26.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..+.|+||||+||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999987654
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.80 E-value=0.00076 Score=64.27 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=30.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..++|+||||+||||+++.|++..+.+.+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 578899999999999999999987777777776544
No 120
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.00059 Score=64.70 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=26.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+..|+|.|+||+|||++|+.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 367899999999999999999999987664
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.00062 Score=65.32 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh-cCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~-l~~pfv 359 (686)
..++|+|+||+|||++++.||+. ++.+++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 67999999999999999999998 676665
No 122
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.71 E-value=0.00081 Score=65.06 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..|+|.|+||+|||++|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5799999999999999999999998887544
No 123
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.69 E-value=0.00075 Score=64.36 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5799999999999999999999998776543
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.67 E-value=0.00089 Score=68.07 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
.++++||||+|||++|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999988876665
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00078 Score=62.22 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++|.||||+|||++|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 36889999999999999999 888877654
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.60 E-value=0.00094 Score=65.64 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6799999999999999999999998776543
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0011 Score=64.11 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 579999999999999999999999877654
No 128
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.58 E-value=0.00088 Score=62.67 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=26.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..++|.|+||+|||++|+.||+.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 368999999999999999999999887653
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.56 E-value=0.0008 Score=63.69 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 130
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.56 E-value=0.00094 Score=63.83 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=26.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..++|.|+||+|||++|+.|++.++.+++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57999999999999999999999986654
No 131
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.54 E-value=0.0011 Score=64.61 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998777644
No 132
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0012 Score=62.37 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..++|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57899999999999999999999998876
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0013 Score=62.26 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..++|.|+||+||||+++.||+.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 57899999999999999999999886654
No 134
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0012 Score=61.54 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.|+|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 588999999999999999999999887643
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.50 E-value=0.0011 Score=62.57 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5789999999999999999999998766533
No 136
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.49 E-value=0.0013 Score=61.53 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH-hcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR-YVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~-~l~~p 357 (686)
..++|.|+||+|||++|+.|++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 5789999999999999999998 45433
No 137
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.49 E-value=0.011 Score=65.25 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=28.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
++..++++||+|+||||++..||..+ +.....+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35788999999999999999998776 5556555654
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.47 E-value=0.0014 Score=61.71 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..++|+||+|+|||++++.|++.++..++ +...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 67899999999999999999998876554 54444
No 139
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.46 E-value=0.0013 Score=64.10 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877644
No 140
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0013 Score=65.03 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999998766543
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.0052 Score=59.55 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~ 362 (686)
..++|+||||+|||++++.++..+ +.+.+.++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578899999999999999998554 44444444
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.45 E-value=0.013 Score=64.87 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
++..++++|++|+||||++..||..+ +.....+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35789999999999999999998766 556666666544
No 143
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.44 E-value=0.0013 Score=65.35 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..|+|.|+||+|||++|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 6799999999999999999999998776543
No 144
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.42 E-value=0.0057 Score=62.10 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh---cCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~---l~~pfv~v~~s~l 366 (686)
..|+|.|+||+|||++|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 57899999999999999999998 6788876666554
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.0073 Score=60.77 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v 361 (686)
..-++++||+|+|||+++..++..+ +...+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3678899999999999998887655 4455444
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.39 E-value=0.0016 Score=62.89 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..|+|.|+||+|||++|+.|++.++.+++..|
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 57899999999999999999999987665433
No 147
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.014 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=28.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..++|+||||+|||++++.++...+.+.+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 67889999999999999999874456666666543
No 148
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.38 E-value=0.0054 Score=69.90 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=49.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc------cCcccccHHHHHHHHHhhcc--h---hhHhhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ------AGYVGEDVESILYKLLTVSD--Y---NVAAAQQ 396 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~------sgyvG~~~~~~l~~l~~~a~--~---~ve~a~~ 396 (686)
..+++.||||||||+++++++..+ +.+++.+..+.-.. .+..... +..++.... . .-.....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~T----ih~ll~~~~~~~~~~~~~~~~~ 280 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTAST----VHRLLGYGPQGFRHNHLEPAPY 280 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEE----HHHHTTEETTEESCSSSSCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHH----HHHHHcCCcchhhhhhcccccC
Confidence 688999999999999999998765 44554333221110 0000111 122221111 0 0001134
Q ss_pred cEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005637 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (686)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~lLE 434 (686)
.+|+|||+..+... ....|++.+.
T Consensus 281 dvlIIDEasml~~~--------------~~~~Ll~~~~ 304 (574)
T 3e1s_A 281 DLLIVDEVSMMGDA--------------LMLSLLAAVP 304 (574)
T ss_dssp SEEEECCGGGCCHH--------------HHHHHHTTSC
T ss_pred CEEEEcCccCCCHH--------------HHHHHHHhCc
Confidence 69999999998776 7777777665
No 149
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.38 E-value=0.0016 Score=64.14 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..|+|.|+||+|||++|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5789999999999999999999998777644
No 150
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0048 Score=60.60 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh--c-------CCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~--l-------~~pfv~v~~s~ 365 (686)
..++|+||||+|||++++.++.. + +...+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 67889999999999999999874 3 34566666544
No 151
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0017 Score=65.60 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~ 367 (686)
+..++|.|+||+|||++|+.|++.++.+++.++...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 36899999999999999999999997666667776653
No 152
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.33 E-value=0.0022 Score=62.18 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+..+.|+||+|+||||+++.|++.++..+ ++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 36788999999999999999999986544 455444
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.33 E-value=0.0016 Score=65.53 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..|+|.||||+||||+|+.|++.++.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 6899999999999999999999987766544
No 154
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.33 E-value=0.0011 Score=65.17 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=26.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..|+|.||||+|||++++.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 57999999999999999999999987654
No 155
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.29 E-value=0.017 Score=58.41 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
.++++.|+||||||++|-.+|..+ |...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999999999998888665 556655555
No 156
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.28 E-value=0.0024 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=27.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
.++|.||||+||+|.|+.||+.++.+.+ +..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 4789999999999999999999987654 44444
No 157
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.0034 Score=59.44 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
..+.|+|++|+|||++++.|++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 678899999999999999999988 888988886544
No 158
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.25 E-value=0.002 Score=63.06 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998777544
No 159
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.22 E-value=0.0026 Score=67.60 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=30.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
..++|+||||+|||++|+.||+.++.+++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5789999999999999999999999888877754
No 160
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.21 E-value=0.012 Score=59.02 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
..++++||+|+|||.+|.+++..++.+.+.+-.+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887666655543
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.21 E-value=0.0081 Score=64.22 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=44.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---Ccccc-----------cHHHHHHHHHhhcchhhH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGE-----------DVESILYKLLTVSDYNVA 392 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG~-----------~~~~~l~~l~~~a~~~ve 392 (686)
...++++||||+|||+||..++..+ +.+.+.++...-... ...|. +.+..+. .....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~----~~~~l~~ 136 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALE----IADMLVR 136 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH----HHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHH----HHHHHHh
Confidence 3678899999999999999997544 455666665432110 00111 1111111 1111122
Q ss_pred hhcCcEEEEccccccch
Q 005637 393 AAQQGIVYIDEVDKITK 409 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~ 409 (686)
...+.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 33578999999999974
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.20 E-value=0.0028 Score=63.55 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=25.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..|+|.||||+||+|.|+.||+.++.+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 67889999999999999999999976554
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.19 E-value=0.0028 Score=65.70 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=30.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+..++|.||||+||||+|+.|++.++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3678999999999999999999988555666776444
No 164
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.17 E-value=0.0036 Score=59.26 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=27.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~ 362 (686)
.+.|.|+||+||||+|+.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887665
No 165
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.11 E-value=0.0035 Score=61.33 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=26.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 47899999999999999999999887664
No 166
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.10 E-value=0.0032 Score=60.14 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 167
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.09 E-value=0.0039 Score=59.78 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~v~ 362 (686)
..|.|.|++|+||||+++.|++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 578999999999999999999998 46776654
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0039 Score=60.38 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=28.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
..+.|.||+|+|||+++++|++.+ +...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 678899999999999999999988 444345665544
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.04 E-value=0.0031 Score=68.30 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=40.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccccccCcccccHHHHHHHHHhhcchhhHhhcCcEEEEccccccch
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~ve~a~~gILfIDEIDkl~~ 409 (686)
..++|+||||+|||+++++++..++..++.++... .+ ... .+... .+..++++||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~~------~~~---~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---DR------LNF---ELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---TT------HHH---HHGGG------TTCSCEEETTCCCSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---hh------HHH---HHHHh------cchhHHHHHHHHHHHH
Confidence 68899999999999999999998876554322211 00 011 11111 2346789999999865
No 170
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.02 E-value=0.003 Score=67.55 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=30.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
..++|+||+|+|||+||..||+.++.+++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4788999999999999999999998888766654
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.00 E-value=0.003 Score=60.94 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
.+.|+|++|+|||++++.|++ ++.+++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 876665433
No 172
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.0024 Score=60.30 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999875
No 173
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.97 E-value=0.011 Score=63.46 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccC---cccc-----------cHHHHHHHHHhhcchhhH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLTVSDYNVA 392 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sg---yvG~-----------~~~~~l~~l~~~a~~~ve 392 (686)
...++++||||+|||++|..++..+ +.+.+.++...-.... ..|. ..+. +.+.+. ..+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~-~~~~~~---~l~~ 138 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEICD---ALAR 138 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHH---HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHH-HHHHHH---HHHh
Confidence 4678899999999999999987654 5567777764321100 0011 1111 111111 1122
Q ss_pred hhcCcEEEEccccccch
Q 005637 393 AAQQGIVYIDEVDKITK 409 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~ 409 (686)
.....+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 34568999999999975
No 174
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.96 E-value=0.0039 Score=59.68 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
+..|.|.|++|+|||++++.||+. +.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 367899999999999999999998 777653
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.95 E-value=0.025 Score=60.79 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=45.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc------Cc--------ccccHHHHHHHHHhhcchhhH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA------GY--------VGEDVESILYKLLTVSDYNVA 392 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s------gy--------vG~~~~~~l~~l~~~a~~~ve 392 (686)
...++|+||||+|||+||..++..+ +.+.+.++....... ++ ...+.+..+.. ....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~----~~~l~~ 136 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI----VDELVR 136 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH----HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH----HHHHhh
Confidence 3678899999999999999998664 556666776542110 00 01111222211 111122
Q ss_pred hhcCcEEEEccccccch
Q 005637 393 AAQQGIVYIDEVDKITK 409 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~ 409 (686)
.....+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24567999999999876
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.94 E-value=0.0029 Score=62.61 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.++|.|+||+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999865543
No 177
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.92 E-value=0.004 Score=59.79 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
.+.|.|++|+|||++++.||+.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999877643
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.89 E-value=0.0057 Score=58.18 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~ 362 (686)
-|.|.|++|+||||+++.|++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999998 88877554
No 179
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.86 E-value=0.0039 Score=60.32 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=25.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+.|+||+|+||||+++.|++ ++.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3688999999999999999998 7877753
No 180
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.81 E-value=0.0055 Score=61.33 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=25.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+..++|+||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 368999999999999999999988876543
No 181
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.81 E-value=0.0026 Score=61.43 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
+..|+|.|+||+||||+++.|++.++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 36789999999999999999999876554433
No 182
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.005 Score=59.14 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..|+|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999988663
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0038 Score=63.80 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=27.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+.|+|++|+|||++++.||+.++.+|+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 689999999999999999999999887764
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.77 E-value=0.016 Score=62.09 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 678999999999999999998776
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.74 E-value=0.012 Score=63.33 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=45.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccccC---cccc-----------cHHHHHHHHHhhcchhhH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLTVSDYNVA 392 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~sg---yvG~-----------~~~~~l~~l~~~a~~~ve 392 (686)
...++++||||+|||++|..++..+ +.+.+.++...-...- ..|. +.+..+..+ ...+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l----~~l~~ 149 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM----ELLVR 149 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH----HHHHh
Confidence 3678899999999999999887554 5566667664321100 0111 112222111 11122
Q ss_pred hhcCcEEEEccccccch
Q 005637 393 AAQQGIVYIDEVDKITK 409 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~ 409 (686)
.....+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 23568999999999974
No 186
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.73 E-value=0.025 Score=59.91 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=42.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEeccc-ccc------cCcc---cccHHHHHHHHHhhcchhhHhhcCcE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATT-LTQ------AGYV---GEDVESILYKLLTVSDYNVAAAQQGI 398 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~~s~-l~~------sgyv---G~~~~~~l~~l~~~a~~~ve~a~~gI 398 (686)
..++++||+|+||||++++++..+.. ..+.++... +.. -+++ |......+...+. ..+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~--------~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR--------MRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--------SCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh--------hCCCE
Confidence 68999999999999999999998742 345555432 210 1122 3332222222221 35789
Q ss_pred EEEccccc
Q 005637 399 VYIDEVDK 406 (686)
Q Consensus 399 LfIDEIDk 406 (686)
|++||+-.
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 187
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.01 Score=63.01 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=44.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEecccccc---cCcccc-----------cHHHHHHHHHhhcchhh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQ---AGYVGE-----------DVESILYKLLTVSDYNV 391 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~v~~s~l~~---sgyvG~-----------~~~~~l~~l~~~a~~~v 391 (686)
..++++||||+|||+||-.++..+ +...+.+|...-.. +.-.|. +.+.....+.... ..+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l-~~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL-DAI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH-HTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH-HHh
Confidence 468899999999999987764332 45667777653211 000111 1122201111110 002
Q ss_pred HhhcCcEEEEccccccch
Q 005637 392 AAAQQGIVYIDEVDKITK 409 (686)
Q Consensus 392 e~a~~gILfIDEIDkl~~ 409 (686)
+...+.+|+||-|..+.+
T Consensus 108 ~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CTTCCEEEEEECSTTCBC
T ss_pred hccCceEEEEeccccccc
Confidence 234678999999999975
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.63 E-value=0.0032 Score=60.79 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
..|+|.|+||+||||+++.|++.++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999875433
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.56 E-value=0.02 Score=73.38 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=49.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccccccc---CcccccH----------HHHHHHHHhhcchhhH
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV----------ESILYKLLTVSDYNVA 392 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~s---gyvG~~~----------~~~l~~l~~~a~~~ve 392 (686)
+..+++|+||||||||+||.+++... +.+.+.++..+..+. ...|.+. ......+.. ....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~---~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH---HHHH
Confidence 45889999999999999999996443 667777777765321 1111110 001111111 1112
Q ss_pred hhcCcEEEEccccccchhcc
Q 005637 393 AAQQGIVYIDEVDKITKKAE 412 (686)
Q Consensus 393 ~a~~gILfIDEIDkl~~~r~ 412 (686)
...+.+|+|||+..+.+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hCCCCEEEECCccccccccc
Confidence 34578999999999976533
No 190
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.54 E-value=0.008 Score=60.88 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..+.|.||||+|||++|+.||+.++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57999999999999999999999987664
No 191
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.54 E-value=0.0061 Score=59.40 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+.|.|++|+|||++++.|++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 578999999999999999999999877753
No 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.51 E-value=0.007 Score=64.04 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=30.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..+++.||+|+|||+||..+|+.++.+++..|.-.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 568899999999999999999999887776665433
No 193
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.49 E-value=0.01 Score=56.46 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=28.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~ 365 (686)
+..++|.|+||+|||++++.+++.++ .++..++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 36788999999999999999998873 3455555433
No 194
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.47 E-value=0.0073 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+..++|+||||+|||++++.|++.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36789999999999999999999874
No 195
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.45 E-value=0.006 Score=59.10 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~v~~s~l 366 (686)
..+.+.|++|+|||++++.|++.+ +.++ ++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCcc
Confidence 578899999999999999999987 4444 444433
No 196
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.44 E-value=0.0093 Score=60.30 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=26.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
...+.|.||+|+||||+++.||+.++.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 357889999999999999999999987654
No 197
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.40 E-value=0.0069 Score=59.30 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..+.|+|++|+||||+++.+++.++.+++ |+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHH
Confidence 56779999999999999999999887775 44433
No 198
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.40 E-value=0.0084 Score=63.59 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
..+++.||+|+|||+||..||+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 5688999999999999999999998766655554
No 199
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.39 E-value=0.015 Score=73.71 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=48.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccccc---cCcccccH-------HHHHHHHHhhcchhhHhhc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDV-------ESILYKLLTVSDYNVAAAQ 395 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l~~---sgyvG~~~-------~~~l~~l~~~a~~~ve~a~ 395 (686)
+...++|+||||+|||+||..+|..+ +.+++.++...... +...|.+. ...+..++......+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccC
Confidence 34789999999999999999997654 44666677654321 00111000 0011222222222233456
Q ss_pred CcEEEEccccccch
Q 005637 396 QGIVYIDEVDKITK 409 (686)
Q Consensus 396 ~gILfIDEIDkl~~ 409 (686)
+.+|+||++..+.+
T Consensus 811 ~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 811 VDVIVVDSVAALTP 824 (1706)
T ss_dssp CSEEEESCSTTCCC
T ss_pred CCEEEEechhhhcc
Confidence 78999999999984
No 200
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.39 E-value=0.007 Score=60.27 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=31.6
Q ss_pred ccccCceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+......++|.||||+|||+||..|++..+ +++..|...+
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 445568899999999999999999999876 6665554444
No 201
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.39 E-value=0.013 Score=59.03 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC--------EEEEeccccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP--------FVIADATTLT 367 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p--------fv~v~~s~l~ 367 (686)
..|.|.|++|+|||++|+.|++.++.+ .+.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 578899999999999999999998876 3356666654
No 202
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.38 E-value=0.0077 Score=58.83 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v 361 (686)
..+.|.|++|+|||++++.|++ ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5788999999999999999998 77766533
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.36 E-value=0.0093 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|+||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6788999999999999999998764
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.31 E-value=0.022 Score=59.71 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~v~~s~ 365 (686)
...++++||||+|||++|..++..+ +.+.+.++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3678899999999999999998654 44566666654
No 205
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.31 E-value=0.02 Score=61.09 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=27.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---------~pfv~v~~s~ 365 (686)
...+.|+||||+|||+|++.++..+. ...+.++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 36777999999999999999987761 3446676644
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.0092 Score=57.19 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999887
No 207
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.28 E-value=0.009 Score=64.31 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
.+++|+||||+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887744
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.21 E-value=0.0065 Score=62.31 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv 359 (686)
..++|.|+||+|||++|+.|++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999864 54444
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.19 E-value=0.011 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 568899999999999999999886
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.19 E-value=0.0096 Score=59.23 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=26.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+..+.|.|++|+|||++++.||+.++.+++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 367899999999999999999999987765
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.17 E-value=0.01 Score=57.95 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
+..+.|+||+|+|||++++.|++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 367889999999999999999988753
No 212
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.10 E-value=0.01 Score=63.40 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
..+++.||+|+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478899999999999999999999866655543
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.00 E-value=0.015 Score=56.76 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=29.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----CCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~v~~s~l 366 (686)
..++|.|++|+|||++++.|++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 5788999999999999999998774 45777775443
No 214
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.00 E-value=0.071 Score=55.92 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4678899999999999999998776 4455555543
No 215
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.92 E-value=0.012 Score=55.99 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~ 365 (686)
..++|+||+|+||||+++.|++..+. .+.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 46789999999999999999986543 23445433
No 216
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.92 E-value=0.018 Score=56.52 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..|.|.|++|||||++++.||+.++.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 57889999999999999999999999997
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.90 E-value=0.01 Score=57.41 Aligned_cols=25 Identities=48% Similarity=0.505 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999886
No 218
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.90 E-value=0.093 Score=51.84 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEE
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v 361 (686)
...+++++++|.|||++|-.+|-.+ |.+...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999999887554 5555555
No 219
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.89 E-value=0.012 Score=64.37 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=28.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~ 363 (686)
..+++.||+|+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 568899999999999999999999876655544
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.86 E-value=0.028 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++||||+|||++|..+|..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999999754
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.78 E-value=0.015 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|+||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999998764
No 222
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.75 E-value=0.013 Score=63.96 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+..|+|+|+||+|||++|+.+++.++..++ +...+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 467889999999999999999998876554 44443
No 223
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.73 E-value=0.047 Score=62.44 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999988775443
No 224
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.71 E-value=0.014 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999998874
No 225
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.65 E-value=0.076 Score=57.81 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=25.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~v~~s~ 365 (686)
...++|+||||+|||+|++.++-.. +...+.++...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3678899999999999999775322 23366666544
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.63 E-value=0.043 Score=58.14 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~v~~s~ 365 (686)
...++|+||||+|||++|..+|... +.+.+.++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3677899999999999999998752 44566666544
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.58 E-value=0.016 Score=56.28 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|+||+|+|||||++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999998763
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.57 E-value=0.033 Score=61.25 Aligned_cols=36 Identities=44% Similarity=0.601 Sum_probs=28.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
+..++++|+||+|||+++..||..+ +.....+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3689999999999999999998776 35566666643
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.53 E-value=0.016 Score=59.79 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=26.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
..|.|.|++|+||||+|+.|+ .++.+++ ++..+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 578999999999999999999 4676654 44433
No 230
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.44 E-value=0.02 Score=56.55 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++.+++ ..+.|+||+|+|||||++.|+..+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334445444 567799999999999999999877
No 231
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.39 E-value=0.025 Score=55.27 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (686)
+.|+|.||+|+|||+|++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987764444
No 232
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.35 E-value=0.039 Score=53.46 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
..+.+.|++|+|||++++.|+..+ +.+++..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 578899999999999999999876 5555555443
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.33 E-value=0.024 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|+||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5677999999999999999999874
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.21 E-value=0.026 Score=54.76 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+|||+|++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998754
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.16 E-value=0.026 Score=56.49 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=24.0
Q ss_pred cccccC-ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
++.+++ ..+.|.||+|+||||+++.|+..++..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 444444 456799999999999999999987643
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.13 E-value=0.037 Score=54.57 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=23.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+..+.|+||+|+|||+|+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999998864
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.09 E-value=0.12 Score=58.08 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=34.2
Q ss_pred cChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 280 vGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
+|.+..++.|...+...- . .....+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-------~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-------D----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-------T----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-------C----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988884110 0 0126788999999999999999996
No 238
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.84 E-value=0.039 Score=63.53 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~l 366 (686)
..|+|.|.||+||||+|++|++.+ +.+++.+|...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 679999999999999999999998 899988875444
No 239
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.83 E-value=0.031 Score=52.94 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.3
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..+.|+||+|+||||+++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 567899999999999999743
No 240
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.81 E-value=0.036 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|.||.|+|||+|+|+|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999987
No 241
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.79 E-value=0.054 Score=51.77 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=19.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.++++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999777654
No 242
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.79 E-value=0.031 Score=62.26 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999886543
No 243
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.73 E-value=0.017 Score=55.67 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC
Q 005637 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.+.|.|++|+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998853
No 244
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.059 Score=52.77 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..++++||||+|||++|..++... +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 678899999999999998886543 455555554
No 245
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.66 E-value=0.044 Score=51.64 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=25.7
Q ss_pred cccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 325 ~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.+...+...+|+||+|+|||+++++|+-.++
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445556788999999999999999988774
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.61 E-value=0.14 Score=56.02 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..++++||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5789999999999999999998874
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.51 E-value=0.11 Score=58.24 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=27.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~v~~ 363 (686)
.++++.||+|+||||++++++..+. ...+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 5799999999999999999998884 23555544
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.45 E-value=0.04 Score=56.38 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++||+|+||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 678899999999999999998876
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.43 E-value=0.084 Score=56.08 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..+.|+|+||+|||+++..++..+ +.....+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 578999999999999999998775 445544444
No 250
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.39 E-value=0.029 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=15.5
Q ss_pred ceEEEEccCCChHHHHHHHHH-Hhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLA-RYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA-~~l 354 (686)
..+.|+||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467799999999999999999 775
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.39 E-value=0.045 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|+||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999998874
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.38 E-value=0.14 Score=53.94 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=28.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
+..++++||+|+|||+++..||..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999999999999998776 5566666654
No 253
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.28 E-value=0.2 Score=48.98 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v 361 (686)
.-.+++||.|+|||+.+..++..+ +...+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999888776655 4444444
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.24 E-value=0.22 Score=55.82 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
+..|+|+|+||+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4689999999999999999998665 566666666
No 255
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.24 E-value=0.052 Score=54.36 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
..|.+.|++|||||++|+.||+.++.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 57889999999999999999999999885
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.14 E-value=0.049 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.-++|.||||+||||+++.|++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999886
No 257
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.10 E-value=0.2 Score=56.02 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=26.0
Q ss_pred CceEEEEccCCChHHHHHHH--HHHhc--CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAra--LA~~l--~~pfv~v~~s~ 365 (686)
...++|+||+|+|||+|++. ++... +..-+.++..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 36788999999999999999 44444 34455555543
No 258
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.09 E-value=0.056 Score=54.66 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=26.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (686)
..+-|.||||+|||++|+.|++.++.+++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 456799999999999999999999887763
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.02 E-value=0.11 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.+.||+|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5788999999999999999998875
No 260
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.97 E-value=0.31 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.2
Q ss_pred ceEEEEccCCChHH-HHHHHHHHhc--CCCEEEEec
Q 005637 331 SNILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT-~LAraLA~~l--~~pfv~v~~ 363 (686)
.-.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 56778999999999 8889986654 556665653
No 261
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.94 E-value=0.29 Score=58.94 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=35.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHHh
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
++|.++.++.|.+.+... . -..+.+.|+|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~-------~-----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-------N-----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-------T-----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-------c-----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 699999999999887410 0 01257889999999999999988754
No 262
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.84 E-value=0.053 Score=57.02 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=22.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+|||+|+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 577899999999999999999987
No 263
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.75 E-value=0.072 Score=59.87 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=28.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l 366 (686)
+..|+|+|.||+|||++|+.||+.++ .+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 46789999999999999999999884 44445555443
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.66 E-value=0.058 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358899999999999999999876
No 265
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.66 E-value=0.046 Score=56.73 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l 366 (686)
..|.+.||+|+||||+|+.|++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4688999999999999999999775 34556676655
No 266
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.65 E-value=0.06 Score=56.39 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..+.|+||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688899999999999999999876
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.53 E-value=0.051 Score=54.93 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=26.2
Q ss_pred CccccccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++..+.|.||+|+|||||.++++....
T Consensus 17 ~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555555667999999999999999998763
No 268
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.52 E-value=0.062 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 6778999999999999999998773
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.49 E-value=0.058 Score=54.19 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=26.4
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
+.++.+++ ..+.|+||+|+|||||.++|+.....
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34455555 46679999999999999999987743
No 270
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.48 E-value=0.064 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|.||||+|||+|++.+|..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577899999999999999998765
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.45 E-value=0.058 Score=53.74 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=25.8
Q ss_pred CccccccCc-eEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.++++ .+.|+||+|+|||||.++|+....
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334555554 566999999999999999998764
No 272
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.41 E-value=0.066 Score=54.47 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999998654
No 273
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.40 E-value=0.065 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..+.|+||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999876
No 274
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.40 E-value=0.43 Score=47.71 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=23.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~ 362 (686)
.-.+++||.|+|||+.+..++..+ +...+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456689999999999887776554 55555554
No 275
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.37 E-value=0.11 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999775
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.24 E-value=0.064 Score=53.93 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++.+++ ..+.|+||+|+|||||+++|+..+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555555 466799999999999999999876
No 277
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.23 E-value=0.19 Score=55.15 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEecc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s 364 (686)
++..++++|++|+|||+++..||..+ +.....+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45788899999999999999998776 4556666653
No 278
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.17 E-value=0.11 Score=58.18 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=34.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 279 VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
++|.+..++.|...+... .. ....++++||+|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~------------------~~------------~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL------------------KG------------EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS------------------TT------------SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc------------------cC------------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 699999999998887310 00 126789999999999999999864
No 279
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.14 E-value=0.071 Score=57.27 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999998876
No 280
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.13 E-value=0.19 Score=57.56 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHH-HHhc--CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTL-ARYV--NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraL-A~~l--~~pfv~v~~ 363 (686)
.-.|+.||||||||+++-.+ +..+ +.+...+..
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46789999999999765443 3333 344443433
No 281
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.08 E-value=0.087 Score=59.96 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=30.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----CCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~v~~s~l 366 (686)
..|+|.|+||+|||++|++|++.++ .+++.+|...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5788999999999999999999985 77887776543
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.01 E-value=0.078 Score=56.17 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++..+.|+||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34788899999999999999999876
No 283
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.96 E-value=0.053 Score=54.69 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+..|+|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999999984
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.96 E-value=0.081 Score=55.12 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=28.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEeccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~ 365 (686)
++..++|+||+|+||||++..||..+ |.....+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 35789999999999999999998665 44566566543
No 285
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.90 E-value=0.074 Score=54.34 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=26.0
Q ss_pred CccccccCc-eEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.++++ .+.|+||+|+|||||.++|+..+.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344555554 566999999999999999998874
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.82 E-value=0.076 Score=53.96 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=25.9
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||.++|+..+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33455555 4667999999999999999998774
No 287
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.77 E-value=0.081 Score=56.50 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~v~ 362 (686)
..++++||+|+||||++++|+..+.. ..+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 68999999999999999999988742 344444
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.75 E-value=0.078 Score=53.39 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=26.1
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++.+++ ..+.|+||+|+|||||.++|+..+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555555 466799999999999999999876
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.73 E-value=0.08 Score=52.87 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.4
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
++.++.+++ ..+.|+||+|+|||||.++|+..+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 334455554 4667999999999999999998864
No 290
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.72 E-value=0.05 Score=60.06 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=23.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+..|+|+|.||+|||++++.|++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999998874
No 291
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.71 E-value=0.16 Score=49.57 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=25.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh----cCCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY----VNVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~----l~~pfv~v~~ 363 (686)
...+++.|+||+|||++|..+|.. .+.+.+.++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 367889999999999999877532 2555555554
No 292
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.67 E-value=0.079 Score=52.67 Aligned_cols=33 Identities=39% Similarity=0.628 Sum_probs=25.8
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||.++|+..+.
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33455544 4677999999999999999998763
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.66 E-value=0.082 Score=53.17 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=25.5
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.+++ ..+.|.||+|+|||||.++|+..+.
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455545 4667999999999999999998764
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.66 E-value=0.082 Score=53.52 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=26.1
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34455555 4667999999999999999998864
No 295
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.65 E-value=0.067 Score=57.99 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=25.9
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||.|+||....
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34555555 4566999999999999999998773
No 296
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.65 E-value=0.34 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++.|+||||||++.+.+++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 57789999999999999887753
No 297
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.54 E-value=0.097 Score=55.36 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999999998875
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.53 E-value=0.074 Score=52.55 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+.|+||+|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999876
No 299
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.53 E-value=0.075 Score=60.30 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=28.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----CCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~v~~s~l 366 (686)
..+.|+|++|+|||||+++||+.++ ..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6788999999999999999999884 23444665444
No 300
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.53 E-value=0.085 Score=54.47 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCCccccccCc-eEEEEccCCChHHHHHHHHHHhcC
Q 005637 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 321 ~~~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.++.++++ .+.|+||+|+|||||+++|+..+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34445666554 567999999999999999998774
No 301
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.51 E-value=0.094 Score=56.33 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..++|+||+|+||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4678899999999999999999876
No 302
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.45 E-value=0.1 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57889999999999999999998754
No 303
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.44 E-value=0.088 Score=53.96 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=25.5
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3455555 4667999999999999999998764
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.42 E-value=0.09 Score=53.43 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=25.4
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.+++ ..+.|+||+|+|||||.++|+..+.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444544 4667999999999999999998874
No 305
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.42 E-value=0.49 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+|+|++|+|||+|..+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999999653
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.40 E-value=0.09 Score=53.62 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=27.2
Q ss_pred CCCccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 321 ~~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.++.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3444566655 4677999999999999999998763
No 307
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.39 E-value=0.14 Score=49.91 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEecc
Q 005637 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s 364 (686)
+|++|++|+|||++|+.++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999987 7777666654
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.39 E-value=0.09 Score=54.01 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=26.0
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33455555 4667999999999999999998874
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.37 E-value=0.11 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999984
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.36 E-value=0.086 Score=54.04 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=26.0
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34555555 4666999999999999999998763
No 311
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.34 E-value=0.11 Score=50.72 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.9
Q ss_pred ccccCceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
++.....+||.|++|+|||++|.++.+. +..++
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 3445689999999999999999999874 44333
No 312
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.27 E-value=0.094 Score=54.19 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=25.9
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|+||+|+|||||.++|+..+.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33455544 4667999999999999999998874
No 313
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.23 E-value=0.49 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.297 Sum_probs=17.5
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
.++++.+|+|+|||..+-..+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 589999999999999875543
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.15 E-value=0.12 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998643
No 315
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.14 E-value=0.099 Score=53.33 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=26.1
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.++|+..+.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555555 4667999999999999999998764
No 316
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.12 E-value=0.43 Score=57.29 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=22.6
Q ss_pred ccccc-CceEEEEccCCChHHHHHHHHHHh
Q 005637 325 TVELE-KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 325 ~v~~~-~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
++..+ ...++|+||.|+|||++.|.++..
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34443 357889999999999999998743
No 317
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.08 E-value=0.11 Score=55.97 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=26.0
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.|+||....
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34555555 4566999999999999999998763
No 318
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.08 E-value=0.1 Score=53.39 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=25.9
Q ss_pred CccccccCc-eEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.++++ .+.|+||+|+|||||.++|+..+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344555554 566999999999999999998763
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.08 E-value=0.12 Score=52.42 Aligned_cols=30 Identities=40% Similarity=0.523 Sum_probs=24.2
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHh
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.++.+++ ..+.|.||+|+|||||.++|+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455545 46679999999999999999986
No 320
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.06 E-value=0.12 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|+|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998753
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.02 E-value=0.15 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...++++|++|+|||+|.+++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.02 E-value=0.11 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|+|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578899999999999999998754
No 323
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.01 E-value=0.1 Score=53.05 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.8
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.++|+..+.
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33455555 4667999999999999999998864
No 324
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.01 E-value=0.3 Score=57.80 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHh
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
+...++|+||.|+|||++.|+++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3457889999999999999999765
No 325
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.12 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
-.++++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998643
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.98 E-value=0.13 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999753
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.91 E-value=0.13 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999754
No 328
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.85 E-value=0.12 Score=52.82 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=24.7
Q ss_pred ccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 324 ~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++.+++ ..+.|+||+|+|||||+++|+...
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455555 466799999999999999999874
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.08 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
..+.++|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998873
No 330
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.78 E-value=0.28 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 689999999999999999998765
No 331
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.77 E-value=0.12 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
-++.|+||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999876
No 332
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.76 E-value=0.14 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 333
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.74 E-value=0.12 Score=55.41 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=27.3
Q ss_pred CCCccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 321 ~~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.++.+++ ..+.|.||+|+|||||.++||....
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445566655 4566999999999999999998763
No 334
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.73 E-value=0.52 Score=56.69 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=21.5
Q ss_pred cccc-CceEEEEccCCChHHHHHHHHHH
Q 005637 326 VELE-KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 326 v~~~-~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
+... ...++|+||.|+|||++.|.+|.
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444 35688999999999999999953
No 335
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.63 E-value=0.85 Score=52.53 Aligned_cols=19 Identities=58% Similarity=0.798 Sum_probs=16.9
Q ss_pred ceEEEEccCCChHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKT 349 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAra 349 (686)
.++++.+|+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 6899999999999998843
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.60 E-value=0.15 Score=49.03 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|+|++|+|||+|..++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998654
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.59 E-value=0.13 Score=55.39 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=26.1
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.|+||....
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34555555 4566999999999999999998763
No 338
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.59 E-value=1.7 Score=54.01 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=30.4
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcCCC--EEEEecc
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADAT 364 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~v~~s 364 (686)
+.++.+++ ..+.++||+|+|||+|+++|.+.+... -+.+|..
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 33455555 567799999999999999999988543 3445543
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.57 E-value=0.13 Score=55.29 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=25.8
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.++||....
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34455554 4667999999999999999998763
No 340
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.56 E-value=0.13 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++|+|++|+|||+|.+++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 341
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.55 E-value=0.12 Score=58.19 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
..|+|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999974
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.54 E-value=0.099 Score=53.59 Aligned_cols=31 Identities=29% Similarity=0.662 Sum_probs=25.3
Q ss_pred ccccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 324 ~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.++.++...+.|.||+|+|||||.++|+..+
T Consensus 24 vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455553467799999999999999999876
No 343
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.54 E-value=1.1 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=27.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEeccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-------~~pfv~v~~s~ 365 (686)
.|+|+.|.||+|||.+++.+...+ ...|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 799999999999999999875432 23588888763
No 344
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.43 E-value=0.15 Score=46.10 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999754
No 345
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.42 E-value=0.13 Score=55.36 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=25.8
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.|+||....
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 33455544 4667999999999999999998763
No 346
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.41 E-value=0.13 Score=55.40 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=25.9
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.|+||....
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34555555 4566999999999999999998763
No 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.35 E-value=0.11 Score=55.42 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=26.1
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.|+||....
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34555555 4667999999999999999998873
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.32 E-value=0.15 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.-|.|.|++|+|||++++.|++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36788999999999999999998873
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.24 E-value=0.29 Score=50.77 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=28.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
++..+.++|++|+|||+++..+|..+ +.....+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 55788899999999999999998776 455555555
No 350
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.19 E-value=0.16 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 351
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.18 E-value=0.15 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++|+|++|+|||+|.+++...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999763
No 352
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.10 E-value=0.23 Score=47.80 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++|++|+|||+++..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998775
No 353
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.09 E-value=0.15 Score=57.22 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+..++|+||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3678899999999999999999876
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.08 E-value=0.16 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998775
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.07 E-value=0.12 Score=48.50 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++|+|++|+|||+|.+.++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 356
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.06 E-value=0.16 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.6
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...++++|++|+|||+|.+++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 357
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.96 E-value=0.19 Score=47.17 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++|++|+|||+|..++....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999997653
No 358
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.91 E-value=0.16 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999743
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.80 E-value=0.13 Score=55.57 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCCccccccCc-eEEEEccCCChHHHHHHHHHHhcC
Q 005637 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 321 ~~~~~v~~~~~-~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.++.++++ .+.|+||+|+|||||.|+|+....
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34455666664 566999999999999999998763
No 360
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.79 E-value=0.15 Score=53.05 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++.+++ ..+.|+||+|+|||||.++|+..+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344555555 466799999999999999999876
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.77 E-value=0.16 Score=55.19 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.7
Q ss_pred CCccccccC-ceEEEEccCCChHHHHHHHHHHhc
Q 005637 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
++.++.+++ ..+.|.||+|+|||||.++|+...
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344455555 466799999999999999999865
No 362
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.75 E-value=0.22 Score=46.22 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=23.7
Q ss_pred ccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+...+.-.+++||+|+|||++..||.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44455678899999999999999997655
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.74 E-value=0.16 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578899999999999999998764
No 364
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.68 E-value=0.19 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++|++|+|||+|.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999997543
No 365
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.63 E-value=0.13 Score=54.02 Aligned_cols=32 Identities=25% Similarity=0.633 Sum_probs=25.5
Q ss_pred cccccC-ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
++.+++ ..+.|+||+|+|||||+++|+..+..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 444444 56779999999999999999988743
No 366
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.61 E-value=0.18 Score=46.06 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999999864
No 367
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.53 E-value=0.28 Score=52.38 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..|++++||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999996543 566766765
No 368
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.51 E-value=0.12 Score=55.35 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=25.9
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.|.||+|+|||||.++||....
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34555555 4666999999999999999998763
No 369
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.45 E-value=0.2 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999743
No 370
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.41 E-value=0.19 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999975
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.33 E-value=0.21 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999643
No 372
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.32 E-value=0.2 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...++++|++|+|||+|.+++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999864
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.31 E-value=0.26 Score=46.37 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999999653
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.31 E-value=0.21 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.31 E-value=0.19 Score=46.90 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHh
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
+...|+++|++|+|||+|+.++...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999754
No 376
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.24 E-value=0.19 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=22.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+|||||+|.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 578899999999999999999876
No 377
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.22 E-value=0.21 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998654
No 378
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.20 E-value=0.28 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++.||||||||+++..+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999987766543
No 379
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.15 E-value=0.21 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+.-|.|.|++|+|||++++.|++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999999887
No 380
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.13 E-value=0.22 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.3
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999975
No 381
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.13 E-value=0.21 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++|+|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999764
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.13 E-value=0.28 Score=51.08 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=29.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEeccc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~s~ 365 (686)
+..+++.|++|+|||+++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5788899999999999999998776 55666666643
No 383
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.12 E-value=0.21 Score=45.98 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 368999999999999999999753
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.04 E-value=0.18 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=19.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.-|.|.|++|+||||+++.|++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999887
No 385
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.04 E-value=0.33 Score=48.36 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
.-|.|.|++|+|||++++.+++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 578899999999999999999999764
No 386
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.03 E-value=0.23 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHh
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
+.-.++|+|++|+|||+|.+.+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999887643
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.02 E-value=0.22 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999753
No 388
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.02 E-value=0.22 Score=45.12 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
-.++++|++|+|||+|.+++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999999853
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.00 E-value=0.23 Score=44.91 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.1
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005637 332 NILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~ 352 (686)
.++++|++|+|||+|...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 390
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.99 E-value=0.22 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999863
No 391
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.96 E-value=0.25 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999964
No 392
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.93 E-value=0.21 Score=49.76 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~ 362 (686)
..|-|+|..|||||++++.+++ +|.+++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 5688999999999999999998 888876444
No 393
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.91 E-value=1 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.2
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764443
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.89 E-value=0.22 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999974
No 395
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.81 E-value=0.23 Score=45.53 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999864
No 396
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.77 E-value=0.45 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.3
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 678899999999999999994
No 397
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.75 E-value=0.25 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999764
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.65 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57889999999999999999987
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.61 E-value=0.35 Score=50.42 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=25.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3578899999999999999997543 345554443
No 400
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.52 E-value=0.26 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 401
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.49 E-value=0.13 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+.|+|++|+|||+|.++++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999988654
No 402
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.46 E-value=0.25 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998643
No 403
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.46 E-value=0.23 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..+.|+|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 404
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.43 E-value=0.23 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999853
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.38 E-value=0.26 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
-.++++|++|+|||+|..++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999754
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.35 E-value=0.27 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999754
No 407
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.25 E-value=0.26 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.25 E-value=0.29 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999765
No 409
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.22 E-value=0.28 Score=45.60 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999887554
No 410
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.22 E-value=0.26 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.6
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...|+++|++|+|||+|..++..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999864
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.14 E-value=0.44 Score=47.18 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--~~pfv~v~~ 363 (686)
..+++.|.+|+|||+++..+|..+ +.....+|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 678899999999999999998665 555655654
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.14 E-value=0.24 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005637 332 NILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~ 353 (686)
.++++|++|+|||+|..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998753
No 413
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.11 E-value=0.21 Score=46.78 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|.+++...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998643
No 414
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.08 E-value=0.28 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999643
No 415
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.06 E-value=0.28 Score=46.02 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|.+++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999753
No 416
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.03 E-value=0.94 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.8
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..+++.||+|+|||+++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999766663
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.01 E-value=0.42 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..+.|.||+|+|||+|.+.|++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 578899999999999999999998644
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.96 E-value=0.29 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999643
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.82 E-value=0.3 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998653
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.82 E-value=0.29 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.-|.|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999887
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.79 E-value=0.29 Score=49.00 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.-|.|.|++|+|||++++.+++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 67889999999999999999987743
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.78 E-value=0.3 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998654
No 423
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.75 E-value=0.3 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998643
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.71 E-value=0.43 Score=52.43 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (686)
..+.|.||+|+|||+|++.|++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 578899999999999999999998543
No 425
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.70 E-value=0.39 Score=54.28 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC---CCEEEEecccc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~v~~s~l 366 (686)
..++|+|++|+|||++|+.|++.++ .++..++...+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 5788999999999999999998763 45666665433
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.57 E-value=0.32 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|..++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999643
No 427
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.56 E-value=0.45 Score=52.22 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=30.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEecccc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s~l 366 (686)
++..++++|++|+|||+++-.||..+ +.....+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35788999999999999999998665 667777777643
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.55 E-value=0.24 Score=45.76 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..++++|++|+|||+|...+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999998885
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.46 E-value=0.34 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|.+.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999754
No 430
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.39 E-value=0.29 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999654
No 431
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.38 E-value=0.36 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998754
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.37 E-value=0.25 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999754
No 433
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.36 E-value=0.3 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||||+|||+|.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 567899999999999999998765
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.36 E-value=0.33 Score=45.36 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 435
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.29 E-value=0.3 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|..++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999864
No 436
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.27 E-value=0.62 Score=46.15 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.3
Q ss_pred cccCceEEEEccCCChHHHHHHHHHHhcCC-CEEEEeccc
Q 005637 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATT 365 (686)
Q Consensus 327 ~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-pfv~v~~s~ 365 (686)
+.|+..|+++|.||+||+++|+.+.+.++. .+..+.+++
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 345688999999999999999999886653 244455543
No 437
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.25 E-value=0.34 Score=46.82 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++++|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 438
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.23 E-value=0.34 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999654
No 439
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.20 E-value=0.34 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|..++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999999973
No 440
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.16 E-value=0.48 Score=51.91 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=26.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~ 363 (686)
..-+++.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3678899999999999999997654 446665554
No 441
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.07 E-value=0.46 Score=50.10 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.+.|+||+|||+++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998665
No 442
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.02 E-value=0.26 Score=52.64 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=24.1
Q ss_pred cccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 325 ~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
.+..+.+-.+|+||+|+|||++..+|+-.+
T Consensus 18 ~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 18 DIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345556678899999999999999997443
No 443
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.98 E-value=0.46 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+||+|+|||||.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 578899999999999999998753
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.95 E-value=0.32 Score=54.38 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..++|.||||+|||+|++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998654
No 445
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.94 E-value=0.46 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++.||||||||+++..++..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999987766544
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.93 E-value=0.48 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|..++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999753
No 447
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.92 E-value=0.27 Score=54.90 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=25.9
Q ss_pred CccccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 323 ~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
+.++.+++..+.|+||+|+|||||.++|+..+
T Consensus 22 ~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 22 ARTFDFDELVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCSSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEccceEEEECCCCCcHHHHHHHHhcCC
Confidence 34455555567799999999999999999876
No 448
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.90 E-value=0.4 Score=46.70 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=25.7
Q ss_pred cccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 325 ~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
.+...+.-.+|+||.|+|||++..+|.-.++.
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34455678899999999999999999766643
No 449
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=86.89 E-value=0.89 Score=47.95 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=24.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCEEEEecc
Q 005637 332 NILLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (686)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~s 364 (686)
++++..|+|+|||..+-+++... +.+.+.+-.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999998775543 4455555443
No 450
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.87 E-value=0.36 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 451
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.84 E-value=0.33 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998643
No 452
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.81 E-value=0.36 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|.+++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999643
No 453
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.79 E-value=0.38 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|.+++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 378999999999999999999653
No 454
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.77 E-value=0.36 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
-.|+++|++|+|||+|.+.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 689999999999999999997543
No 455
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.76 E-value=0.44 Score=50.26 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=26.1
Q ss_pred ccccCceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005637 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (686)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (686)
+.+....++|.|++|+|||++|.++.+. +..++
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4445689999999999999999999775 44444
No 456
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.74 E-value=0.36 Score=45.07 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.3
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|.+++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999874
No 457
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.73 E-value=0.35 Score=45.23 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998654
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.72 E-value=0.37 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|.+.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 68999999999999999988653
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.72 E-value=0.39 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..|+++|++|+|||+|..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6899999999999999999975
No 460
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.65 E-value=0.36 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|.+.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999743
No 461
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.64 E-value=0.38 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999754
No 462
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.57 E-value=0.36 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...++++|++|+|||+|.+++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 368999999999999999999754
No 463
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=86.52 E-value=0.34 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...|+++|++|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999853
No 464
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.50 E-value=0.56 Score=51.21 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=25.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc----CCCEEEEec
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~v~~ 363 (686)
.-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 578899999999999999887543 456665555
No 465
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.50 E-value=0.38 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999653
No 466
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.49 E-value=1.1 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005637 331 SNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+.|+|+||+|||+|..++...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998754
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.23 E-value=0.41 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.0
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA 351 (686)
...++++|++|+|||+|...+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999985
No 468
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.09 E-value=0.33 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
....+.|.||+|+|||+|.++|+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34678899999999999999998765
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.02 E-value=0.42 Score=45.61 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 470
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=86.01 E-value=0.52 Score=49.66 Aligned_cols=40 Identities=35% Similarity=0.397 Sum_probs=29.2
Q ss_pred ccccCceEEEEccCCChHHHHHHHHHHhcCCCEEEEecccc
Q 005637 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (686)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~v~~s~l 366 (686)
+++....+||.|++|+|||++|..+.+ -|..++.=|...+
T Consensus 143 v~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 143 LEVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 445568999999999999999988865 3455554444444
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.95 E-value=0.44 Score=45.19 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998743
No 472
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.90 E-value=0.42 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 473
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.82 E-value=0.43 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHhc
Q 005637 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
....+.|.||+|+|||+|.++|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34678899999999999999999 54
No 474
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.73 E-value=0.59 Score=50.50 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=27.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..|++++|+||+|||++++.+...+ +.+++.+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4899999999999999987775433 667777776
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.67 E-value=0.43 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998653
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.66 E-value=0.39 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
...+.|+||+|+|||||+++|+..+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999765
No 477
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.56 E-value=1.5 Score=44.03 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHH-HHHHHHHhc--CCCEEEEe
Q 005637 331 SNILLMGPTGSGKTL-LAKTLARYV--NVPFVIAD 362 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~-LAraLA~~l--~~pfv~v~ 362 (686)
.-.+++||-|+|||+ |.+.+-+.. +...+.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 566789999999999 555553332 44444443
No 478
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.55 E-value=0.45 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999754
No 479
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.53 E-value=0.39 Score=51.51 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.7
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHhcC
Q 005637 328 LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.+...+.|+||+|+|||||.++|+....
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 4456789999999999999999987653
No 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.45 E-value=0.56 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|..++...
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998643
No 481
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.39 E-value=0.65 Score=56.62 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=34.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCccccccCceEEEEccCCChHHHHHHHHHH
Q 005637 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 278 ~VvGqd~aK~~L~~aV~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..+|.+..++.|.+.+... . ..+.+.++|+.|+|||+||+.+++
T Consensus 129 ~~VGRe~eLeeL~elL~~~--------d-----------------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL--------R-----------------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC--------C-----------------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc--------C-----------------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 3589999999998887410 0 015788999999999999999975
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.36 E-value=0.29 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=10.3
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++++|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999998863
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=85.31 E-value=0.39 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
-.++|+||+|+|||+|.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999998753
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=85.25 E-value=0.44 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...++++|++|+|||+|.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999864
No 485
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.05 E-value=0.68 Score=49.23 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=26.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~v~~ 363 (686)
..-+++.|+||+|||++|..+|..+ +.+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3578899999999999999997654 555555544
No 486
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.03 E-value=0.46 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.9
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..|+++|++|+|||+|.+++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999853
No 487
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.01 E-value=0.25 Score=52.90 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=26.4
Q ss_pred cccccCceEEEEccCCChHHHHHHHHHHhcCC
Q 005637 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (686)
Q Consensus 325 ~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (686)
++.+.++.+.|+||+|+|||+|.++|+-.++.
T Consensus 55 ~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 55 ELELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45555678889999999999999999877753
No 488
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.00 E-value=0.49 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005637 330 KSNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
...|+++|++|+|||+|..++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999999753
No 489
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=84.99 E-value=0.48 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..++|+|+||+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999974
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.98 E-value=0.36 Score=53.00 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEccCCChHHHHHHHHHHh
Q 005637 333 ILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~ 353 (686)
+.|+||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999876
No 491
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.96 E-value=0.54 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.6
Q ss_pred ccccccCceEEEEccCCChHHHHHHHHHHhc
Q 005637 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (686)
Q Consensus 324 ~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (686)
..+...+...+|+||+|+|||++.++|+-.+
T Consensus 20 ~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 20 GTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 3556666788899999999999999997654
No 492
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.93 E-value=0.48 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005637 330 KSNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (686)
...|+++|++|+|||+|..++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 493
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.82 E-value=0.49 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLAR 352 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (686)
..|+++|++|+|||+|.+++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999863
No 494
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=84.75 E-value=1.9 Score=49.82 Aligned_cols=18 Identities=56% Similarity=0.732 Sum_probs=16.5
Q ss_pred ceEEEEccCCChHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAK 348 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAr 348 (686)
.++++.||+|+|||+.+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 789999999999999883
No 495
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.74 E-value=0.38 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.5
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..++++|++|+|||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999985
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=84.59 E-value=0.53 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..|+++|++|+|||+|.+.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 67999999999999999999643
No 497
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.55 E-value=0.43 Score=54.02 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=26.2
Q ss_pred CccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 323 ~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
+.++.+++ ..+.++||+|+|||||++.++..+.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 34455555 4677999999999999999998874
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=84.54 E-value=0.53 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005637 331 SNILLMGPTGSGKTLLAKTLARY 353 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (686)
..++++|++|+|||+|.+.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998753
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=84.53 E-value=0.42 Score=44.62 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005637 331 SNILLMGPTGSGKTLLAKTLA 351 (686)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (686)
..++++|++|+|||+|..++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999884
No 500
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.49 E-value=0.46 Score=53.78 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=27.2
Q ss_pred CCCccccccC-ceEEEEccCCChHHHHHHHHHHhcC
Q 005637 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (686)
Q Consensus 321 ~~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (686)
.++.++.+++ ..+.++||+|+|||||++.++..+.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444555555 4677999999999999999998763
Done!