BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005638
(686 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/693 (68%), Positives = 554/693 (79%), Gaps = 30/693 (4%)
Query: 1 MWRNLARQSSTRNFKFSPS-------KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRNLA+ + TR + S + F K +LE+Q ++S P+ G RR
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
LS Q+ LG+ F + P FG+ + YASAAEAIASE ++SG +EVQEL+++ N
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ L+KQPK G G+ K+ +L+RRQIK+ETEAWE+AAKEY++LL+DMCE
Sbjct: 121 K--------GDKLEKQPKLIG-GVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVITMHK
Sbjct: 172 QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231
Query: 230 LVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+T
Sbjct: 232 LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT-- 289
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+ETA
Sbjct: 290 -----KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMII 406
YIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RHM+I
Sbjct: 345 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVI 404
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
PYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+AL+TLG+
Sbjct: 405 PYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGN 464
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
TKWR+NKR+LGVIDR+WASGG LA LVD+EDVPLPE+P+T+DE EI+KWKWKV++ KK+N
Sbjct: 465 TKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKEN 524
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
SE+HSQRCDIELKL+VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF
Sbjct: 525 SERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 584
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
EG PLGK+GL WLKIHLAN+YAGGVDKLSYEGRVAFTENHL+DIFDSADRPLEGRRWWL
Sbjct: 585 EGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLS 644
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDPFQCLATCINLSEALRS SPE+TISH+PVH
Sbjct: 645 AEDPFQCLATCINLSEALRSSSPETTISHMPVH 677
>gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 968
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/694 (63%), Positives = 535/694 (77%), Gaps = 37/694 (5%)
Query: 1 MWRNLARQSSTRNFK----FSPS---KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRN+ + +++R K FS S KV++ FL +I S + L++ C G R
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
FL QK SNF S P +GVL ++ YA+AAEA E +LSGSEE+QE+++ N
Sbjct: 61 FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
++ D + KQPK G KY ML++RQIKIETEAWE+AAKEYQDL+AD+CE
Sbjct: 121 KQ-----DKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICE 175
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWF+PLRDAI +Q + + K ++A YF+ LPADMMAVITMHK
Sbjct: 176 QKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVITMHK 235
Query: 230 LVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
L+GLLM++ G VRV QAA IGEAIENE RI++FF+ TKK+
Sbjct: 236 LMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFEKTKKQ---------------- 279
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
PE+L + +KL+K++T L+K+QKLQ+V IVK H DSKPWG DA VKVGCRLIQLL+ET
Sbjct: 280 -PEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGTDAHVKVGCRLIQLLIET 338
Query: 347 AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMI 405
AYIQPPVDQ+GD+PPD+RPAFVH+LK+ KE+ + G+RYGVIECDPLV +G+ KT HMI
Sbjct: 339 AYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIECDPLVYRGMVKTAGHMI 398
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
IPYMPMLVPP W GY++G HFFLPSYVMR GARQQRE +K + QL PVF+ALD LG
Sbjct: 399 IPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKRASKKQLGPVFKALDILG 458
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQ 525
STKWRVNKR+L VI+++WASGG LA LVD+ED+PLPE+P +DE EI+ WKWKVK K++
Sbjct: 459 STKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQPMVEDEAEIRNWKWKVKAVKRE 518
Query: 526 NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
NSE+HSQRCD ELKL+VARKMK+EEGFYYPHNLDFRGRAYPMHP+LNH+GSD CRG LEF
Sbjct: 519 NSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHIGSDFCRGTLEF 578
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
EG PLG++GL WLKIHLANLYAGGVDKLSY+ R++FTENHLD+IFDSADRPLEG RWWL
Sbjct: 579 AEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWL 638
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GAEDPFQCLA CI+LSEALRSPSPE+TISH+PVH
Sbjct: 639 GAEDPFQCLAVCIDLSEALRSPSPETTISHMPVH 672
>gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 997
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/696 (67%), Positives = 556/696 (79%), Gaps = 17/696 (2%)
Query: 1 MWRNLARQSSTR----NFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWRN AR++S NF ++++Q + L+K+ E QTLL S LG RR S LS
Sbjct: 1 MWRNFARRTSLSSKKLNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLS 60
Query: 57 SQKSNLGQSNFTQSIYPFGV--LTSRSYASAA-EAIAS--ESELSGSEEVQELIDQFNE- 110
SQ + +FT PFG + YA+AA + IAS ES+ SG +E+QE I++ N+
Sbjct: 61 SQNHEFIKPSFTNLTNPFGFSHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEINKH 120
Query: 111 -KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
K + +Q KK GMG KY +LK+RQIK+ETEAWE+AA+EYQ+LL DMCE
Sbjct: 121 HKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCE 180
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRDAIAK+Q +++K +++ PYF+ LPADMMAVITMHK
Sbjct: 181 QKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHK 240
Query: 230 LVGLLMTNAG---EVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE--GDSEPL 284
L+GLLMT G VRVVQAAC +GEAIE+EARI F + TKKK + N E G EP+
Sbjct: 241 LMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPV 300
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T+D EKL KEQEKL+K+VT L+KKQK+QQVRG+ KGH DS PWGQ+A VKVGCRLIQLL+
Sbjct: 301 TSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLI 360
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRH 403
ETAYIQPPV+QLGD PDIRPAF+HTLK+ K+ K RRYGVIECDP+VR GLEK+ RH
Sbjct: 361 ETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARH 420
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
M+IPYMPMLVPPLNW GY++G + FLPSYVMRTHGA+QQR +K TP QLEPV++AL+T
Sbjct: 421 MVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNT 480
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LG+TKWR+NK+IL V+DR+WA+GG LAGL+D+ED PLPE+ T+DE EIKKWKWKVK K
Sbjct: 481 LGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVK 540
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+NSE+HSQRCDIELKL+VARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLGSD+CRG+L
Sbjct: 541 KENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGIL 600
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
EF EG PLGK+G WLKIHLAN+YAGGVDKLSYEGRVAFTENHLD IFDSADRPLEGRRW
Sbjct: 601 EFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRW 660
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WLGAEDPFQCLATC NL+EA RS SPE+TISH+P+H
Sbjct: 661 WLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIH 696
>gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa]
gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/552 (75%), Positives = 478/552 (86%), Gaps = 6/552 (1%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
MG KY +LKRRQ+K+ETEAWEQ A+EYQ++L DMCEQKLAPNLPYVKSLFLGWFEPLRD
Sbjct: 1 MGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRD 60
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EVRVVQAACQ 249
AI +Q + + + YFN+LPADMMAVITMHKL+GLLMT G +RVVQAA
Sbjct: 61 AILAEQELCKVN-SRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASV 119
Query: 250 IGEAIENEARIQSFFKSTKK-KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+GEAIENEA+I F + TKK KN + EG+S + EKL KEQEKL+K+VT+L+KK
Sbjct: 120 VGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKK 179
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
QK+ QVR IVKGH DS PWGQ+A +KVG RLIQL++ETAYIQPP+DQ+GD PPDIRPAFV
Sbjct: 180 QKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFV 239
Query: 369 HTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
HTLK+ TK+ K RRYGVIECDPLVRKGLEK+ RHM+IPYMPMLVPPLNW GY++G +F
Sbjct: 240 HTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYF 299
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
FLPSYVMR HGA+QQR IK R+QLEPVF+ALDTLG+TKWRVNKRILGVIDR+WASGG
Sbjct: 300 FLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGG 359
Query: 488 CLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
LAGLVD+EDVPLPE+P T+DE EI+KW+WKVK+ KK+NSE+HSQRCD+ELKL+VARKMK
Sbjct: 360 HLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVELKLAVARKMK 419
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
DEEGFYYPHN+DFRGRAYPMHPYLNHLGSD+CRG+LEF EG PLGK+GL WLKIHLANLY
Sbjct: 420 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLY 479
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
AGGVDKLSY+GR++FTENHLDDIFDSADRPLEG+RWWLGAEDPFQCLA CINLSEALRSP
Sbjct: 480 AGGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCINLSEALRSP 539
Query: 668 SPESTISHIPVH 679
SPE+ ISH PVH
Sbjct: 540 SPETAISHTPVH 551
>gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa]
gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/560 (73%), Positives = 482/560 (86%), Gaps = 6/560 (1%)
Query: 125 QPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFL 184
Q KK GMG KY +LKRRQIK+ETEAWEQAA+EYQ++L DMCEQKLAPNLPYVKSLFL
Sbjct: 18 QEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFL 77
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EV 241
GWFEPLRDAI +Q + + +++ +F++LPADMMAVITMHKL+GLLMT G +
Sbjct: 78 GWFEPLRDAIVAEQELCKRNLR-VSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASI 136
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL-EGDSEPLTNDPEKLIKEQEKLKK 300
RVVQAA +GEAIE+E RI F + TKK+ + + EG+S+ + EKL KEQEKL+K
Sbjct: 137 RVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRK 196
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
+VT+LIKKQK+QQVR IVKGH DS+PWGQ+ VKVG RLIQL++ETAYIQPP+DQ+GD P
Sbjct: 197 KVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGP 256
Query: 361 PDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
PDIRPAFVHTLK+ TK+ K RRYGVIECDPLVRKGLEK+ RHM+IPYMPMLVPPLNW
Sbjct: 257 PDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWT 316
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
GY++G H FLPSYVMR HG++QQR+ +K R+QLEPVF+ALDTLG+TKWR+NKR+L V+
Sbjct: 317 GYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVV 376
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
DR+WASGG LAGLVD+ED PLPE+P T+DE EI+KW WKV++ KK+NSE+HSQRCDIELK
Sbjct: 377 DRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELK 436
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L+VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD+CRG+LEF EG PLGK+GL WL
Sbjct: 437 LAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWL 496
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KIHLANLYAGGVDKLSY+GR++FTENHLDDIFDSAD+PLEGRRWWLGAEDPFQCLA CIN
Sbjct: 497 KIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACIN 556
Query: 660 LSEALRSPSPESTISHIPVH 679
LSEALRSPSPE+ SH PVH
Sbjct: 557 LSEALRSPSPETATSHTPVH 576
>gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/675 (65%), Positives = 532/675 (78%), Gaps = 19/675 (2%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE ++E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDTDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + AP+F+ LPA+MMAVITMHKL+G LMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I+KWKWKVK KK+N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVH 679
RSPSPE+ IS++P+H
Sbjct: 687 RSPSPETAISYMPIH 701
>gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/704 (63%), Positives = 539/704 (76%), Gaps = 34/704 (4%)
Query: 1 MWRNLARQSSTR-------------NFKFSPSKVSQTTNF--LKKITSLETQTLLDSSCP 45
MWRN+A+++ R + ++S SQ F + K + E + S
Sbjct: 40 MWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFS 99
Query: 46 LLGFRRTSFLSSQKSNLGQSNF--TQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEE 100
+GFRR +SS++ +G+ +F ++ F +SYAS AEA++S E ++S S+E
Sbjct: 100 EMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDE 159
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
+QEL+ + ++ ++ ++ K GM +Y L+RRQ+KIETEAWE AAKEY
Sbjct: 160 IQELLGEMKKEEKRQVNFKR---REKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEY 216
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPAD 220
++LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI K+Q + YAPYF+ LPAD
Sbjct: 217 KELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPAD 276
Query: 221 MMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTK-KKNATDNNL 277
MM+VITMHKLVGLLMT G RVVQAAC IG+AIE E RI +F + TK KK D N+
Sbjct: 277 MMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNV 336
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
EG DP +I EQEKL+K+VT+L+KKQKL R IVKGH +SKPWG +A KVG
Sbjct: 337 EGGG----FDP--VIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGS 390
Query: 338 RLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRK 395
RLI+LLM+TAYIQPPVD QL D+PPDIRPAFVHT K+ +EA K GRR+GVIECDPLV+K
Sbjct: 391 RLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKK 450
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPY+PMLVPPL W GY++G H FLPSYVMRTHGARQQRE +K PR+QLE
Sbjct: 451 GLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLE 510
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKW 515
PVF+AL+TLG+TKWR+NKR+ V+DR+WA GGCLA LVD+ DVPLPEKP+T+DE +++KW
Sbjct: 511 PVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKW 570
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
KWKVK+ KK NSE+HSQRCDIELKL+VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLG
Sbjct: 571 KWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLG 630
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
SDLCRG+LEF EG PLG +GLHWLKIHLANL+AGGVDKLS+EGR+ FTENHLDDIFDSAD
Sbjct: 631 SDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSAD 690
Query: 636 RPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
RPLEG+RWWL AEDPFQ LA CINLSEALRS SPE+TISHIPVH
Sbjct: 691 RPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVH 734
>gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/675 (66%), Positives = 533/675 (78%), Gaps = 19/675 (2%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+L+K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERLRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I+KWKWKVK KK+N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVH 679
RSPSPE+ IS++P+H
Sbjct: 687 RSPSPETAISYMPIH 701
>gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
AltName: Full=NsRpoT-A; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1;
Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/675 (66%), Positives = 533/675 (78%), Gaps = 19/675 (2%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I+KWKWKVK KK+N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVH 679
RSPSPE+ IS++P+H
Sbjct: 687 RSPSPETAISYMPIH 701
>gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
AltName: Full=NictaRpoT1-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1B;
Flags: Precursor
Length = 1002
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/714 (63%), Positives = 541/714 (75%), Gaps = 48/714 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
+K P+ QLEPVFQALDTLG+TKWRVN+++LG++DR+WASGG LA LVD+EDVPLPE P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPD 527
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
T+DE EI+KWKWKVK KK+N E+HSQRCDIELKL+VARKMKDE+GFYYPHNLDFRGRAY
Sbjct: 528 TEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
PMHPYLNHLGSDLCRG+LEF EG PLG +GL WLKIHLAN+Y GGVDKLSYEGRVAF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
HL+DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EALRSPSPE+ IS++P+H
Sbjct: 648 HLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIH 701
>gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/714 (62%), Positives = 541/714 (75%), Gaps = 48/714 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
+K P+ QLEPVFQALDTLG+TKWRVN+++LG+++R+WASGG LA LVD+EDVPLPE P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPD 527
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
T+DE EI+KWKWKVK KK+N E+HSQRCDIELKL+VARKMKDE+GFYYPHNLDFRGRAY
Sbjct: 528 TEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
PMHPYLNHLGSDLCRG+LEF EG PLG +GL WLKIHLAN+Y GGVDKLSYEGRVAF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
HL+DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EALRSPSPE+ IS++P+H
Sbjct: 648 HLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIH 701
>gi|308026305|emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/604 (67%), Positives = 489/604 (80%), Gaps = 13/604 (2%)
Query: 80 RSYASAAEAIASESE-LSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKY 138
+ +AS AEA++S E S EE++ L+++F+E+ + + + K +G AKY
Sbjct: 102 QGFASVAEAVSSTDEDTSAIEEIKGLVERFSEEVFK--EKEGEFRGKRRTKFGNLGYAKY 159
Query: 139 YMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ 198
LKRRQIKIETEAWEQAAKEY++L+ DMC+ KLA NLPY+KSLFLGWFEPLRD IA +Q
Sbjct: 160 NALKRRQIKIETEAWEQAAKEYKELMMDMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQ 219
Query: 199 ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIEN 256
+ Y PY N LPA+MMAVITMHKLVGL+MT+ G RVVQAAC+IG+AIEN
Sbjct: 220 EACRRGKCRAAYGPYLNRLPAEMMAVITMHKLVGLMMTSGDHGCARVVQAACRIGDAIEN 279
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
E+RI SF + TKKK+A N E +PE + KE+E L+K+VT+LIKKQKL+QV
Sbjct: 280 ESRIHSFLEKTKKKHARGNMAE-------EEPETVTKEKEFLRKKVTNLIKKQKLRQVTK 332
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
+VKG DS PWG +A KVGC LI+LL+ETAYIQPP+DQ D PPDIRPAF H+L++ +K
Sbjct: 333 LVKGKDDSAPWGVEAHAKVGCHLIELLIETAYIQPPLDQTVDGPPDIRPAFRHSLRNVSK 392
Query: 377 E-ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
E + RRYGVIECDPLVRKGL+KT RH +IPYMPMLVPPL W GY++G H FLPSY+MR
Sbjct: 393 EQSSNSRRYGVIECDPLVRKGLDKTARHTVIPYMPMLVPPLCWTGYDKGAHLFLPSYIMR 452
Query: 436 THGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
THG+RQQRE +K TP QL+ +F+ALDTLGSTKWR+NKR+L V++R+WASGG LAGLVD
Sbjct: 453 THGSRQQREAVKRTPTQQLQSIFEALDTLGSTKWRINKRLLAVVERIWASGGNLAGLVDC 512
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
ED PLPEKP+T+DE ++KWKW ++ KK+NSEKHSQRCD+ELKLSVARKMK+EEGFYYP
Sbjct: 513 EDAPLPEKPDTEDEAVLRKWKWSLRNTKKENSEKHSQRCDVELKLSVARKMKEEEGFYYP 572
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLANLYAGGVDKLS
Sbjct: 573 HNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 632
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
Y+GR+AF ENHLDDIFDSAD+PLEG RWWLGAEDPFQCLA CINLSEALRS SP++TISH
Sbjct: 633 YDGRLAFVENHLDDIFDSADKPLEGSRWWLGAEDPFQCLAACINLSEALRSSSPDTTISH 692
Query: 676 IPVH 679
+PVH
Sbjct: 693 VPVH 696
>gi|48716693|dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 951
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/551 (71%), Positives = 471/551 (85%), Gaps = 8/551 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK+ N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKKS----NKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 345
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 346 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 405
Query: 370 TLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 406 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 465
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
LPSYVMRTHGARQQR+ ++ PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W+SGG
Sbjct: 466 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGR 525
Query: 489 LAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD 548
LA LVD+ DV LPEKP+T+DE ++KKW+W ++ AKK+NSE+HSQRCD+ELKL+VARKMKD
Sbjct: 526 LADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKD 585
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA 608
E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GL WLKIHLANLYA
Sbjct: 586 EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYA 645
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
GGVDKLSY+GR+AFTENHL+DIFDSADRPLEG+RWWLGAEDPFQCLA CINL+EALRSPS
Sbjct: 646 GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPS 705
Query: 669 PESTISHIPVH 679
PE+ ISHIPVH
Sbjct: 706 PETMISHIPVH 716
>gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/516 (77%), Positives = 448/516 (86%), Gaps = 10/516 (1%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVIT
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+
Sbjct: 121 T-------KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLI 173
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
ETAYIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RH
Sbjct: 174 ETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARH 233
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
M+IPYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+AL+T
Sbjct: 234 MVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNT 293
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LG+TKWR+NKR+LGVIDR+WASGG LA LVD+EDVPLPE+P+T+DE EI+KWKWKV++ K
Sbjct: 294 LGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVK 353
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+NSE+HSQRCDIELKL+VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRG+L
Sbjct: 354 KENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 413
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
EF EG PLGK+GL WLKIHLAN+YAGGVDKLSYEGRVAFTENHL+DIFDSADRPLEGRRW
Sbjct: 414 EFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRW 473
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WL AEDPFQCLATCINLSEALRS SPE+TISH+PVH
Sbjct: 474 WLSAEDPFQCLATCINLSEALRSSSPETTISHMPVH 509
>gi|1865721|emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/664 (64%), Positives = 511/664 (76%), Gaps = 28/664 (4%)
Query: 30 KITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVL------TSRSYA 83
KI Q ++ P+LGF R L + S +G SNF PFG+ TS SYA
Sbjct: 38 KIRQFLGQNSVNPRFPMLGFGRNGELLCRNSEMGGSNFMFYANPFGIFGFYAQSTSCSYA 97
Query: 84 SAA---EAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYM 140
+AA E + + SE +E++EL+D+ N+ + + S+ K+P GM +Y +
Sbjct: 98 TAAAAEEIVTASSE--EDDEIRELVDEINK--LERVKPQSIRRKEPINMVAGMTAGRYNV 153
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++RQIK+ETEAW +AA+EYQ+LLADMCEQKLAPNLPY+KSLFLGWFEPL+DAI Q
Sbjct: 154 LRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQEA 213
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEA 258
+ Y F+ LPADMMAVITMHKL+GLLMT +G V+QAA QIGEA+E EA
Sbjct: 214 CKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNGGTTVIQAATQIGEAVEQEA 273
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
+I+ F + +KKK AT+NN E DS K Q++L K+VT+L+KKQK+ QVR IV
Sbjct: 274 KIRKFLEKSKKKPATNNNDEDDS----------AKAQQRLAKKVTTLMKKQKISQVREIV 323
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
+G DSKPW QD VKVGC+LIQLL ETAYIQPP DQL D PPDIRPAF+HT K+ KE+
Sbjct: 324 RGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPAFIHTQKTVCKES 383
Query: 379 LKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
KG RRYGVIECDPLVR+GLEKT RHM+IPYMPML+PPLNW GY++G + +LPSY+MRT
Sbjct: 384 QKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRT 443
Query: 437 HGARQQRETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
HG +QQR+ IK R + L VF+ALDTLG+TKWRVNK++L +IDR+WASGGCLA LVD+
Sbjct: 444 HGVKQQRDAIKRVARDNNLCTVFEALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDR 503
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
ED+PLP +P+TDD EIKKWKWKVK KK N+E+HSQRCD ELKL+VARKMKDEEGFYYP
Sbjct: 504 EDMPLPGEPDTDDAEEIKKWKWKVKHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYP 563
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYPMHP+LNHLGSDLCRG+LEF EG PLGK+GL+WLK+H+ANLYAGGVDKLS
Sbjct: 564 HNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLS 623
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
YEGRVAFTEN LDD+FDSADRPLEGRRWWL AEDPFQCLA CINL++ALRS SPE +SH
Sbjct: 624 YEGRVAFTENRLDDVFDSADRPLEGRRWWLTAEDPFQCLAACINLTDALRSSSPEDYLSH 683
Query: 676 IPVH 679
IP+H
Sbjct: 684 IPIH 687
>gi|222641119|gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/551 (71%), Positives = 471/551 (85%), Gaps = 8/551 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 137 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 196
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 197 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 256
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK+ N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 257 IGEAIEHEVRIHKFLEKTKKKS----NKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 311
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 312 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 371
Query: 370 TLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 372 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 431
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
LPSYVMRTHGARQQR+ ++ PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W+SGG
Sbjct: 432 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGR 491
Query: 489 LAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD 548
LA LVD+ DV LPEKP+T+DE ++KKW+W ++ AKK+NSE+HSQRCD+ELKL+VARKMKD
Sbjct: 492 LADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKD 551
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA 608
E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GL WLKIHLANLYA
Sbjct: 552 EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYA 611
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
GGVDKLSY+GR+AFTENHL+DIFDSADRPLEG+RWWLGAEDPFQCLA CINL+EALRSPS
Sbjct: 612 GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPS 671
Query: 669 PESTISHIPVH 679
PE+ ISHIPVH
Sbjct: 672 PETMISHIPVH 682
>gi|115478128|ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group]
gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group]
Length = 1017
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/551 (71%), Positives = 471/551 (85%), Gaps = 8/551 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK+ N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKKS----NKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 345
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 346 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 405
Query: 370 TLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 406 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 465
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
LPSYVMRTHGARQQR+ ++ PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W+SGG
Sbjct: 466 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGR 525
Query: 489 LAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD 548
LA LVD+ DV LPEKP+T+DE ++KKW+W ++ AKK+NSE+HSQRCD+ELKL+VARKMKD
Sbjct: 526 LADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKD 585
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA 608
E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GL WLKIHLANLYA
Sbjct: 586 EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYA 645
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
GGVDKLSY+GR+AFTENHL+DIFDSADRPLEG+RWWLGAEDPFQCLA CINL+EALRSPS
Sbjct: 646 GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPS 705
Query: 669 PESTISHIPVH 679
PE+ ISHIPVH
Sbjct: 706 PETMISHIPVH 716
>gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags:
Precursor
gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase
[Arabidopsis thaliana]
gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 976
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/688 (59%), Positives = 516/688 (75%), Gaps = 22/688 (3%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ALDTLG+TKW++
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKI 467
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
NK++L ++DR+WA+GG + GLVD+EDVP+PE+P +D+ + K W+W+ K A KQN+E+HS
Sbjct: 468 NKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHS 527
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRCDIELKL VARKMKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRG+LEF EG PL
Sbjct: 528 QRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPL 587
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
GK+GL WLKIH+ANLYAGGVDKL+YE R+AFTE+HL+DIFDS+DRPLEG+RWWL AEDPF
Sbjct: 588 GKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPF 647
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CINLSEALRSP PE+ ISHIP+H
Sbjct: 648 QCLAACINLSEALRSPFPEAAISHIPIH 675
>gi|2330568|emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 976
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/688 (59%), Positives = 515/688 (74%), Gaps = 22/688 (3%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ALDTLG+TKW++
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKI 467
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
NK++L ++DR+WA+GG + GLVD+EDVP+P +P +D+ + K W+W+ K A KQN+E+HS
Sbjct: 468 NKKVLSLVDRIWANGGRIGGLVDREDVPIPVEPEREDQEKFKNWRWESKKAIKQNNERHS 527
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRCDIELKL VARKMKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRG+LEF EG PL
Sbjct: 528 QRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPL 587
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
GK+GL WLKIH+ANLYAGGVDKL+YE R+AFTE+HL+DIFDS+DRPLEG+RWWL AEDPF
Sbjct: 588 GKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPF 647
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CINLSEALRSP PE+ ISHIP+H
Sbjct: 648 QCLAACINLSEALRSPFPEAAISHIPIH 675
>gi|90657592|gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/704 (60%), Positives = 514/704 (73%), Gaps = 37/704 (5%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLL---------------DSSCP 45
MWRN+A+Q+ +R SP ++S + + ++++ S
Sbjct: 40 MWRNIAKQTISR----SPVRLSVCRQS-RGLLGFSSESIFPEIFIFRPSVIGPISSSGFH 94
Query: 46 LLGFRRTSFLSSQKSNLGQSNF--TQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEE 100
+G+ RT + + G+ F + F + RSY +AAEA++S E + S +E
Sbjct: 95 DMGYSRTCEIPAPGDFSGRPGFGFLKDECCFHRFSPRSYVNAAEAVSSTDIEEDASVVDE 154
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQEL+ E L + +++ GM KY LKRRQ+KIETEAWE+AA EY
Sbjct: 155 VQELL---REMKKEEKKEKVHLRRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEY 211
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPAD 220
++LL DMCEQKLAPNLPYVKSLFLGWFEPLR+AIAKDQ + YA Y + LPAD
Sbjct: 212 KELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPAD 271
Query: 221 MMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE 278
M+AVITMHKL+GLLMT G V+V+ AAC +G+AIE E RI F + TKKK E
Sbjct: 272 MIAVITMHKLMGLLMTGGDNGCVKVIMAACTVGDAIEQEIRICRFLEKTKKKK------E 325
Query: 279 GDSEPLTN-DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
SE + N + E +KE++ LK++V+ LIKKQKL VR I+ H SKPW D KVG
Sbjct: 326 NISEGVENVEKETTVKEEDWLKRKVSELIKKQKLPAVRQILNSHDASKPWSTDVRAKVGS 385
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL 397
RLI+L M+TAYIQPP +Q GD PPDIRPAFVHT K+ GRRYGVIECDPLVRKGL
Sbjct: 386 RLIELFMKTAYIQPPTNQRGDDPPDIRPAFVHTFKTVKNSKKSGRRYGVIECDPLVRKGL 445
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
EKTG HM++PYMPMLVPP+NW GY+RG +FFLPSY+MR HGA+QQRE +K TPR QL+ V
Sbjct: 446 EKTGWHMVMPYMPMLVPPVNWSGYDRGAYFFLPSYLMRIHGAKQQREALKSTPRKQLQLV 505
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKW 517
F+ALDTLG+ KWRVNKR+L ++DR+W SGG LA LVD+ DVPLPEKP+T+DE +KKWKW
Sbjct: 506 FEALDTLGNAKWRVNKRVLSIVDRIWNSGGRLADLVDRSDVPLPEKPDTEDENILKKWKW 565
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
KVK+A K+N E+HSQRCDIELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGSD
Sbjct: 566 KVKSANKENRERHSQRCDIELKLNVARKMKDEEGFYYPHNIDFRGRAYPMHPHLNHLGSD 625
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
LCRGVLEF EG PLG +GL WLKIHLANLYAGGVDKLS+EGR+AFTENHLDDIF+SADRP
Sbjct: 626 LCRGVLEFAEGKPLGSSGLRWLKIHLANLYAGGVDKLSFEGRLAFTENHLDDIFNSADRP 685
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMV 681
LEGRRWWL AEDPFQCLA CIN++EALRSP PE+ +SHIP+H +
Sbjct: 686 LEGRRWWLQAEDPFQCLAVCINITEALRSPCPETFVSHIPIHQL 729
>gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/696 (59%), Positives = 514/696 (73%), Gaps = 27/696 (3%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGSEEVQELID 106
L + + +SYAS AEA+A +E ++S +EVQEL+
Sbjct: 95 LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLT 154
Query: 107 QFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLAD 166
+ ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL D
Sbjct: 155 ELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFD 211
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA Y LPADMMAVIT
Sbjct: 212 MCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVIT 271
Query: 227 MHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +
Sbjct: 272 MHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV 331
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI+LL+
Sbjct: 332 T-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLL 384
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
+TAYIQPP +QL PPDIRPAF+H++++ KE RRYG+I+CD LV KGLE+T RH
Sbjct: 385 QTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARH 444
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
M+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+ALDT
Sbjct: 445 MVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDT 504
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LGSTKWR+NKR+L VIDR+WA GG LA LVD++D PLPE+P+T+DE KW+WKVK+ K
Sbjct: 505 LGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVK 564
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+N E+HSQRCDIELKL+VARKMKDEEGF+YPHN+DFRGRAYPMHP+LNHLGSD+CRGVL
Sbjct: 565 KENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVL 624
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
F EG PLG++GL WLKIHLANL+AGGV+KLS EGR+AFTENH+DDIFDSAD+PLEGRRW
Sbjct: 625 VFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRW 684
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WL AEDPFQCLA CINLSEA+RS SPE++ISHIPVH
Sbjct: 685 WLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVH 720
>gi|334183757|ref|NP_001185355.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/695 (59%), Positives = 516/695 (74%), Gaps = 29/695 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKT-------GRHM 404
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHM 407
Query: 405 IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTL 464
+IPY+PML+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ALDTL
Sbjct: 408 VIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTL 467
Query: 465 GSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK 524
G+TKW++NK++L ++DR+WA+GG + GLVD+EDVP+PE+P +D+ + K W+W+ K A K
Sbjct: 468 GNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIK 527
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
QN+E+HSQRCDIELKL VARKMKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRG+LE
Sbjct: 528 QNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILE 587
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F EG PLGK+GL WLKIH+ANLYAGGVDKL+YE R+AFTE+HL+DIFDS+DRPLEG+RWW
Sbjct: 588 FCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWW 647
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L AEDPFQCLA CINLSEALRSP PE+ ISHIP+H
Sbjct: 648 LNAEDPFQCLAACINLSEALRSPFPEAAISHIPIH 682
>gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
Length = 1020
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/704 (59%), Positives = 516/704 (73%), Gaps = 44/704 (6%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TS-------FLSSQ-KSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKW 515
PVF+ALDTLG+TKWR+NKR+L V+DR+WA GG LA LVD++D PLPE+P+T+DE KW
Sbjct: 496 PVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKW 555
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+WKVK+ KK+N E+HSQRCDIELKL+VARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLG
Sbjct: 556 RWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLG 615
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
SD+CRGVLEF EG PLG++GL WLKIHLANL+AGGV+KLS EGR+ FTENH+DDIFDS+D
Sbjct: 616 SDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSD 675
Query: 636 RPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+PLEGRRWWL AEDPFQCLA CINLSEA+RS SPE+++SHIPVH
Sbjct: 676 KPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVH 719
>gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1020
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/704 (59%), Positives = 516/704 (73%), Gaps = 44/704 (6%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TS-------FLSSQ-KSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDI PAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKW 515
PVF+ALDTLG+TKWR+NKR+L V+DR+WA GG LA LVD++D PLPE+P+T+DE + KW
Sbjct: 496 PVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALLPKW 555
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+WKVK+ KK+N E+HSQRCDIELKL+VARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLG
Sbjct: 556 RWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLG 615
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
SD+CRGVLEF EG PLG++GL WLKIHLANL+AGGV+KLS EGR+ FTENH+DDIFDS+D
Sbjct: 616 SDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSD 675
Query: 636 RPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+PLEGRRWWL AEDPFQCLA CINLSEA+RS SPE+++SHIPVH
Sbjct: 676 KPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVH 719
>gi|242046328|ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/551 (70%), Positives = 464/551 (84%), Gaps = 7/551 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI++ETEAWEQAAKEY++LLADMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q D ++ PYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + T+KK+ + E ++ T+ + KEQ++L+K+VT L+KKQ
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTD----IAKEQQRLRKKVTDLMKKQ 304
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
KL+QVR IVK +S+PWGQD KVG RLI+L M+TA+IQPP Q D PDIRPAF H
Sbjct: 305 KLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRH 364
Query: 370 TLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G H F
Sbjct: 365 EMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLF 424
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
LPSYVMRTHGARQQRE +K PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W+SGG
Sbjct: 425 LPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGR 484
Query: 489 LAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD 548
LA LVD+ DVPLPEKP+T+DET IK WKW +++ KK+NSE+HSQRCD+ELKL+VARKMKD
Sbjct: 485 LADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKD 544
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA 608
EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GLHWLKIHLANLYA
Sbjct: 545 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYA 604
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
GGVDKLSY+GRVAFTENHL++IFDSADRPLEG+RWWLGAEDPFQCLA C+NL+EALRS S
Sbjct: 605 GGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSS 664
Query: 669 PESTISHIPVH 679
PE+TISHIPVH
Sbjct: 665 PETTISHIPVH 675
>gi|308026128|emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/617 (65%), Positives = 484/617 (78%), Gaps = 15/617 (2%)
Query: 67 FTQSIYPFGVLTSRSYASAAEAIASESE-LSGSEEVQELIDQFNEKGVSILDSSSMLDKQ 125
F + + V + + A+ AEA+AS E +S EE+Q L+++ +E+ + D +
Sbjct: 91 FMNASFRCRVGSVQGLANVAEAVASTDEDVSAIEEIQGLLEELSEEVAR--QKTGEFDAK 148
Query: 126 PKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG 185
K +G KY KRRQIKIETEAWEQAA+EY++L DMC+QKLAPNLPY+KSLFLG
Sbjct: 149 NKPNFGDLGFGKYKAQKRRQIKIETEAWEQAAREYRELFVDMCKQKLAPNLPYMKSLFLG 208
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRV 243
WFEPLRD IA +Q + + YA Y ++LPADM+AVITMHKL+GL+MT + G RV
Sbjct: 209 WFEPLRDRIAAEQESYRKGKSRAAYARYIDHLPADMVAVITMHKLMGLMMTSNDNGCARV 268
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
VQAACQIGEAIENEARI F + TKKK A N E + PE + KE+E L+K+VT
Sbjct: 269 VQAACQIGEAIENEARIHRFLEKTKKKPANANKAEAE-------PEAVTKEKEFLRKKVT 321
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLIKKQKL+QV IVKG DS+PWG + KVGCRLI+LLM+ I P+DQ D
Sbjct: 322 SLIKKQKLRQVTKIVKGKDDSEPWGTEGHAKVGCRLIELLMKP-LISAPLDQTADGHL-Y 379
Query: 364 RPAFVHTLKSFTK-EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYN 422
AF H+L+S + + RRYGVIECDPLVRKGL++T RHM+IPYMPMLVPPL W GY+
Sbjct: 380 SSAFRHSLRSPSNHQQNNSRRYGVIECDPLVRKGLDRTARHMVIPYMPMLVPPLGWTGYD 439
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM 482
+G H FLPSYVMRTHGARQQRE +K PR QL+ VF+ALDTLGSTKWRVNKR+L V+DR+
Sbjct: 440 KGAHLFLPSYVMRTHGARQQREAVKSAPRKQLQSVFEALDTLGSTKWRVNKRVLAVVDRI 499
Query: 483 WASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
WASGG LAGLVD +DVPLPEKP+T+DE ++KWKW ++ A+K+NSE++SQRCD+ELKL+V
Sbjct: 500 WASGGHLAGLVDCQDVPLPEKPDTEDEAVLRKWKWSLRNARKENSERYSQRCDVELKLAV 559
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GLHWLKIH
Sbjct: 560 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLHWLKIH 619
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
+ANLYAGG+DKLSY+GR+AF ENHLDDIFDS+DRPLEG RWWLGAEDPFQCLA CINLS+
Sbjct: 620 VANLYAGGIDKLSYDGRLAFVENHLDDIFDSSDRPLEGSRWWLGAEDPFQCLAACINLSD 679
Query: 663 ALRSPSPESTISHIPVH 679
ALRS SPE+TISH+P+H
Sbjct: 680 ALRSSSPETTISHVPIH 696
>gi|357155565|ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/554 (69%), Positives = 472/554 (85%), Gaps = 14/554 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GMG++KY L++RQ++IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFLGWFEPLR
Sbjct: 146 GMGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLR 205
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 206 DQIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 265
Query: 250 IGEAIENEARIQSFFKSTKKKNA--TDNNLE-GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F + TKKKN DN +E GDS+ + KEQ++L+K+VT L+
Sbjct: 266 IGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSD--------IAKEQQRLRKKVTDLM 317
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQK++QVR IVK ++PWGQDA KVG RLI+LL+ETA+IQPPV Q DS PDIRPA
Sbjct: 318 KKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPA 377
Query: 367 FVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ T+E K RRYGVI+CDPL+R+GL++T +HM+IPYMPML+PP++W GY++G
Sbjct: 378 FTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGA 437
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
H FLPSYVMRTHGARQQRE +K P+ Q++ +F+ALDTLGSTKWR+NK++L ++DR+W+S
Sbjct: 438 HLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSS 497
Query: 486 GGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
GG LA LVD+ DV LPEKP+T+DETE+KKW+W +++ KK+NSE+HSQRCD+ELKL+VARK
Sbjct: 498 GGRLADLVDRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVELKLAVARK 557
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
MKDE GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLG +GL WLKIHLAN
Sbjct: 558 MKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLCWLKIHLAN 617
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LYAGGVDKLSY+GR+AFTENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA C++L+EALR
Sbjct: 618 LYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVCMDLTEALR 677
Query: 666 SPSPESTISHIPVH 679
S SPE+ ISHIPVH
Sbjct: 678 SSSPEAMISHIPVH 691
>gi|195970381|gb|ACG60670.1| hypothetical protein BoB028L01.020 [Brassica oleracea var.
alboglabra]
Length = 951
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/684 (59%), Positives = 511/684 (74%), Gaps = 23/684 (3%)
Query: 1 MWRNLARQSSTRNFK-FSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ +++ R K FS S + T+F I+S+ L G R ++
Sbjct: 1 MWRNIFGRATLRKIKPFSDS--TSATHFRGFISSIN----------LSGGVRNQLATNPV 48
Query: 60 SNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSS 119
+ LG+ +PF R A+AA+ I S+ SGS+EV EL+ ++ + +
Sbjct: 49 NELGRLTSVLHNHPFAF---RGLATAAQTIDSDDSSSGSDEVNELMSAMEKETERVRKKA 105
Query: 120 SMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYV 179
+ KQP K GMG KYY LK+RQ+K+ETE WE+AAKE Q+++ DMCEQKLAPNLPYV
Sbjct: 106 RLAAKQPMKVVAGMGAQKYYSLKQRQVKLETEEWEKAAKECQEIIEDMCEQKLAPNLPYV 165
Query: 180 KSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA- 238
KSLFLGWFEPLRDAI D + K + YA Y LPADMMAVITMHK++GLLMTNA
Sbjct: 166 KSLFLGWFEPLRDAIQADLDGFKVKKGKIPYASYMEQLPADMMAVITMHKMMGLLMTNAE 225
Query: 239 --GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
G V+VV AA QIGEAIE EARI SF K K N ++ +SE + E KE
Sbjct: 226 GVGVVKVVNAATQIGEAIEQEARITSFMKKAK---KKKNVVDDESEAVNASGEVETKETL 282
Query: 297 KLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL 356
KLKK++ +L+KK K++QVR IVK H K WGQ+A VKVG RLIQLLMETAYIQPP +Q
Sbjct: 283 KLKKQINTLLKKHKVRQVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQF 342
Query: 357 GDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPP 415
D PP+IRPAF + + T E K R+YG IECDPL+RKGL+K+ RHM+IPY+PML+PP
Sbjct: 343 DDGPPEIRPAFKQSSRIVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPP 402
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
NW GY++G HFFLPSY+MRTHGA+QQR IK TP++QLEPVFQ L+TLG+TKWR+NK++
Sbjct: 403 QNWTGYDQGAHFFLPSYIMRTHGAKQQRIAIKRTPKAQLEPVFQGLNTLGNTKWRINKKV 462
Query: 476 LGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCD 535
L ++DR+WA+GG + GLVD++DVP+PE+P+++D+ EIK+WKWK+K A K+NSE+HSQRCD
Sbjct: 463 LSLVDRIWANGGRVGGLVDRDDVPIPEEPDSEDQEEIKQWKWKMKEANKENSERHSQRCD 522
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
+ELKL VARKMKDEEGFY+PHN+DFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLG++G
Sbjct: 523 VELKLEVARKMKDEEGFYFPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFCEGKPLGESG 582
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIH+ANLY GGVDK +Y+ RVAF E+HL+DIFDS+DRPLEG+RWWL AEDPFQCLA
Sbjct: 583 LRWLKIHIANLYGGGVDKFAYKDRVAFAESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLA 642
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
C+NLSEALRSP PE+ +SHIP+H
Sbjct: 643 ACMNLSEALRSPFPEAAVSHIPIH 666
>gi|297841627|ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
gi|297334536|gb|EFH64954.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
Length = 975
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/687 (58%), Positives = 507/687 (73%), Gaps = 21/687 (3%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKS 60
MWRN+ ++S R KF S T + ++ + SS L+G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSGTHFQVNRVRGIL------SSVNLIGVRNGLSINPIDE 54
Query: 61 NLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSIL 116
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 FGGLSSFRYGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIR 109
Query: 117 DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL 176
+ + PK+ GMG KYYML++RQ+K+ETE WE+AA+E +++LADMCEQKLAPNL
Sbjct: 110 KKARLAATPPKRVIAGMGAQKYYMLRQRQVKMETEEWERAARECREILADMCEQKLAPNL 169
Query: 177 PYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236
PY+K+LFLGWFEP+R+AI D + K + YAP+ LPAD MAVITM+K++GLLMT
Sbjct: 170 PYMKTLFLGWFEPVRNAIQADLDLFKIKKGKIPYAPFMEQLPADKMAVITMNKMMGLLMT 229
Query: 237 NA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
N G V++V AA QIGEA+E E RI SF + KKNAT + ++E + E + K
Sbjct: 230 NVEGVGIVKLVNAATQIGEAVEQEVRINSFLQKNNKKNATGKTI--NTEAVHVSEETVAK 287
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV 353
E EK +KR T L++K KL++V+ +V+ H KPWGQ+A VKVG RLIQLL+E AYIQPP
Sbjct: 288 ETEKARKRATVLMEKNKLREVKVLVRKHDSFKPWGQEAQVKVGARLIQLLIENAYIQPPA 347
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PML
Sbjct: 348 EQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPML 407
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
+PP NW GY++G H FLPS++MRTHGA QQR ++ TP+ QLEPVF+ALDTLG+TKWR+N
Sbjct: 408 IPPQNWTGYDQGAHLFLPSFIMRTHGAIQQRTVMRRTPKEQLEPVFEALDTLGNTKWRIN 467
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
K++L ++DR+WA+GG L GLVD+EDVP+PE+P +D + K WKW+ K A KQN+E+HSQ
Sbjct: 468 KKVLSLVDRIWANGGRLGGLVDREDVPVPEEPEREDHEKFKNWKWESKKAIKQNNERHSQ 527
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCDIELKL VARKMKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRG+LEF EG PLG
Sbjct: 528 RCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLG 587
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GL WLKIH+ANLYAGGVDKL+YE R+AFTE+HL+DI+DS+DRPLEG+RWWL AEDPFQ
Sbjct: 588 KSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIYDSSDRPLEGKRWWLNAEDPFQ 647
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
CLA CINLSEALRSP PE+ ISHIP+H
Sbjct: 648 CLAACINLSEALRSPFPEAAISHIPIH 674
>gi|6958204|gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/550 (68%), Positives = 463/550 (84%), Gaps = 7/550 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G +KY L++RQI+IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFL WFEPLR
Sbjct: 160 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLR 219
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 220 DQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 279
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEA+E+E RI F + TKKKN ++ E + D + KEQE+L+K+VT L+KKQ
Sbjct: 280 IGEAVEHEVRIHKFLEKTKKKNTK--EVDKVVEAVDAD---IAKEQERLRKKVTDLMKKQ 334
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR +VK ++PWGQDA KVG RLI+L +ETA+IQPP Q GDS P+IRPAF H
Sbjct: 335 KIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTH 394
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+NW GY++G H FL
Sbjct: 395 EMRTVAREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 454
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL 489
PSYVMRTHGARQQRE +K P+ Q++ +F+ALD LGSTKWRVNK +L ++DR+W+SGG L
Sbjct: 455 PSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRL 514
Query: 490 AGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
A LVD+ DV LPEKP+T+DE E+KKW+W +++A+K+NSE+HSQRCD+ELKL+VARKMK+E
Sbjct: 515 ADLVDRADVSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEE 574
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLG++GL WLKIHLANLY G
Sbjct: 575 AGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGG 634
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
GVDKLSY+GR+AFTENHLDDIFDSA+RPLEG+RWWL AEDPFQCLA C++L+EALRSPSP
Sbjct: 635 GVDKLSYDGRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSP 694
Query: 670 ESTISHIPVH 679
E+ ISHIPVH
Sbjct: 695 ETVISHIPVH 704
>gi|414887624|tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/554 (69%), Positives = 457/554 (82%), Gaps = 14/554 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI+IETEAWEQAA EY++LLADMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D IA +Q D ++ P+F+ LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLE---GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F + T+KKN + E GD+ + EQ++L+K+VT L+
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDT--------NIAIEQQRLRKKVTDLM 300
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL+QVR IVK S+PWGQDA KVG RLI L + TA+IQPP Q D PDIRPA
Sbjct: 301 KKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPA 360
Query: 367 FVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G
Sbjct: 361 FRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGA 420
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
H FLPSYVMRTHGARQQR+ +K PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W++
Sbjct: 421 HLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSN 480
Query: 486 GGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
GG LA LVD+ DVP+PEKP+T+DET +K WKW ++ AKK+NSE+HSQRCD+ELKL+VARK
Sbjct: 481 GGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARK 540
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GL WLKIHLAN
Sbjct: 541 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLAN 600
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LYA GVDKLSY+GR+AF ENHL++IFDSADRPLEGRRWWLGAEDPFQCLA C+NL+EALR
Sbjct: 601 LYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALR 660
Query: 666 SPSPESTISHIPVH 679
S SPE+TISHIPVH
Sbjct: 661 SSSPETTISHIPVH 674
>gi|40255318|emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/553 (68%), Positives = 465/553 (84%), Gaps = 14/553 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G +KY L++RQI+IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFLGWFEPLR
Sbjct: 18 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLR 77
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 78 DQIIAEQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 137
Query: 250 IGEAIENEARIQSFFKSTKKKNA--TDNNLE-GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEA+E+E RI F + TKKKN D +E GDS+ + KEQ+ L+K+VT L+
Sbjct: 138 IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSD--------IAKEQQLLRKKVTDLM 189
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQK++QVR +VK ++PWGQDA KVG RLI+L +ETA+IQPP Q GDS P+IRPA
Sbjct: 190 KKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPA 249
Query: 367 FVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGH 426
F H +++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+NW GY++G H
Sbjct: 250 FTHEMRTVAREQ-KSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAH 308
Query: 427 FFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG 486
FLPSYVMRTHGARQQRE +K P+ Q++ +F+ALD LGSTKWRVNKR+L ++DR+W+SG
Sbjct: 309 LFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSG 368
Query: 487 GCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM 546
G LA LVD+ DV LPEKP+T+DE E+KKW+W +++AKK+NSE+HSQRCD+ELKL+VARKM
Sbjct: 369 GRLADLVDRADVSLPEKPDTEDEAELKKWRWSMRSAKKENSERHSQRCDVELKLAVARKM 428
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
K+E GFY+PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLG++GL WLKIHLANL
Sbjct: 429 KEEVGFYHPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANL 488
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
Y GGVDKLSY+GR+AFTENHL+DIFDSA+RPLEG+RWWL AEDPFQCLA C++L+EALRS
Sbjct: 489 YGGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRS 548
Query: 667 PSPESTISHIPVH 679
SPE+ ISHIPVH
Sbjct: 549 SSPETVISHIPVH 561
>gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/618 (65%), Positives = 487/618 (78%), Gaps = 23/618 (3%)
Query: 72 YPFGVLTSRSYASAAEAIAS----ESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
+ FG ++ Y+ AEA++S E E + + +QEL+ +G+ ++ + K
Sbjct: 87 FQFG---AKGYSGVAEAVSSTDVEEDEAAPVDGIQELL-----QGMKKEKQKKVVGYRWK 138
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
+G G+G ++Y L+RRQ+KIETE WE+AAKEY++LL DMCE KLAPNLPY+KSLFLGWF
Sbjct: 139 NQGKGVGQSRYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWF 198
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT-----NAGEVR 242
EPLRDAI K+Q + M YAPYF LPAD MAVI MHKL+GLLMT G R
Sbjct: 199 EPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTAR 258
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
VVQAAC IG+AIENE RI F + TKKK +N E + + IKE++KL+K+V
Sbjct: 259 VVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVAD-----IKEEQKLRKKV 313
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L+KKQKL VRG+VKG D+KPWG KVG RLI+LL++TAYIQPP DQL D+ PD
Sbjct: 314 IDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPD 373
Query: 363 IRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGY 421
IRPAFVH+ K+ TKE++K RRYG+I+CDPL+ KGLE+T ++M+IPYMPMLVPP+NW GY
Sbjct: 374 IRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGY 433
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
++GGH FLPSYVMRTHG RQQRE +K PR QLEPVF+ALDTLG TKWRVNK++L V+DR
Sbjct: 434 DKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDR 493
Query: 482 MWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS 541
+WASGG +A LVD++DVPLP++P+TDDE +IKKWKWK K+ +K+N E++SQRCDIELKL+
Sbjct: 494 IWASGGRIADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLA 553
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
VARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF EG LGK+GL WLKI
Sbjct: 554 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKI 613
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
HLANLYAGGVDKLSYEGR+AFTENH +DIFDSAD+PLEGRRWWL AEDP QCLA CI L+
Sbjct: 614 HLANLYAGGVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLT 673
Query: 662 EALRSPSPESTISHIPVH 679
EALRS SPE+ ISHIPVH
Sbjct: 674 EALRSSSPETFISHIPVH 691
>gi|356560775|ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 955
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/685 (60%), Positives = 512/685 (74%), Gaps = 37/685 (5%)
Query: 1 MWRNLARQSST---RNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSS 57
MW NLA+++S+ NF+ S S + F K T Q P +G ++ F+
Sbjct: 1 MWTNLAKRASSTLRNNFRVS----SLSPRFCKPQTCKTFQGF-----PEVGVSQSKFVFH 51
Query: 58 QKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILD 117
+ + S + + R +AS AEAI S +EVQ+L+++ K +D
Sbjct: 52 EGFSCSSSWSWSWM-----VLGRGHASVAEAIESTDTEDDYDEVQKLLEEM-AKAEHKVD 105
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
SSS KY +LKRRQI+ ETEAW +AA+EY +LL DM ++KLAPNLP
Sbjct: 106 SSSY---------------KYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLP 150
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEPLR+AI DQ +D M++APYFN+LPADMMAV+TMHKL+ LLMTN
Sbjct: 151 YMKSLFLGWFEPLRNAILADQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTN 210
Query: 238 A---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A G RV+QAACQIGEA+ENEARI F K K+ ++ S LT + ++ ++
Sbjct: 211 ANGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQK 270
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
Q +L+KRV L+KKQK Q GI+ D K WGQ+A VKVG RL+QLL+ETAYIQPP +
Sbjct: 271 QSRLRKRVAGLMKKQKKLQAMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTN 330
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414
Q+GD PPDI PAF HTL++ + E + RRYGVIECDPLV+ GLEK+ RHM+IPYMPMLVP
Sbjct: 331 QIGDGPPDIHPAFRHTLRTLSNER-ETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVP 389
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
P+NW GY++G + FLPSYVMR HGA+QQRE +K P+SQL+PVF+AL+TLG+TKWRVNKR
Sbjct: 390 PINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKR 449
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRC 534
+L VID++WA+GG LA LVD+E+VP P++P+T DE EI+KWKWKVK KK+NSE+HSQRC
Sbjct: 450 VLCVIDQIWANGGRLADLVDRENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRC 509
Query: 535 DIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA 594
DIELKL+VARKMKDEE FYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG LGK+
Sbjct: 510 DIELKLAVARKMKDEEAFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKS 569
Query: 595 GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCL 654
GL WLKIHLANLYAGGVDKLSY+GR++FTENHLDDIFDSADRPLEG+ WWL AEDPFQCL
Sbjct: 570 GLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCL 629
Query: 655 ATCINLSEALRSPSPESTISHIPVH 679
A CINLSEALRSP+PE+TISH+PVH
Sbjct: 630 AACINLSEALRSPTPETTISHMPVH 654
>gi|356526655|ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 949
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/686 (61%), Positives = 511/686 (74%), Gaps = 45/686 (6%)
Query: 1 MWRNLARQSST--RN-FKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSS 57
MW NLA+++S+ RN F+ S S F K TS + P G R+ FL
Sbjct: 1 MWTNLAKRASSTLRNTFRVS----SLYPRFCKPQTSKTINPYPFQAFPKAGVSRSKFLFY 56
Query: 58 QKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILD 117
+ ++S AEAI S +EVQ+L+ Q K +D
Sbjct: 57 E----------------------GFSSVAEAIESTDTEDDYDEVQKLLQQM-AKAEHKVD 93
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
+SS + KY +LKRRQIK ETEAW +AA+EY++LL DM EQKLAPNLP
Sbjct: 94 NSSS-----------SSSYKYKLLKRRQIKSETEAWAEAAREYEELLEDMREQKLAPNLP 142
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEPLR+AI DQ +D M++APYFN+LPADMMAV+TMHKL+ LLMTN
Sbjct: 143 YMKSLFLGWFEPLRNAILADQELCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTN 202
Query: 238 ---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G RV+QAACQIGEA+ENEARI F K K+ ++ LT + ++ K+
Sbjct: 203 TNGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHVVPVEQRGELTEENGEMDKK 262
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
Q +L+KRV +L+KKQK Q GIV+G D K WGQ+A VKVG RL+QLL+ETAYIQPP +
Sbjct: 263 QSRLRKRVAALMKKQKKLQAMGIVRGQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPAN 322
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLV 413
+GD PPDIRPAF HTLK+ + E+ K RRYGVIECDPLV+ GLEK+ RHM+IPYMPMLV
Sbjct: 323 LIGDGPPDIRPAFKHTLKTLSSESQKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLV 382
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNK 473
PP+NW GY++G + FLPSYVMR HGA+QQRE +K P+SQL+PVF+AL+TLGSTKWRVNK
Sbjct: 383 PPINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGSTKWRVNK 442
Query: 474 RILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR 533
R+L VID++WA+GG LA LVD+E+VP P++P+T DE EI+KWKWKVK KK+N+E+HSQR
Sbjct: 443 RVLCVIDQIWANGGRLADLVDRENVPEPKEPDTKDEAEIRKWKWKVKAVKKENNERHSQR 502
Query: 534 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK 593
CDIELKL+VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK
Sbjct: 503 CDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGK 562
Query: 594 AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC 653
+GL WLKIHLANLYAGGVDKLSY+GR+ FTENHLDDIFDSADRPLEG+RWWL AEDPFQC
Sbjct: 563 SGLCWLKIHLANLYAGGVDKLSYDGRIEFTENHLDDIFDSADRPLEGKRWWLQAEDPFQC 622
Query: 654 LATCINLSEALRSPSPESTISHIPVH 679
LA C NLSEALRSP+PE+TISH+PVH
Sbjct: 623 LAACTNLSEALRSPTPETTISHMPVH 648
>gi|162457737|ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/554 (69%), Positives = 456/554 (82%), Gaps = 14/554 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI+IETEAWEQAA EY++LLADMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D IA +Q D ++ P+F+ LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLE---GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F + T+KKN + E GD+ + EQ++L+K+VT L+
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDT--------NIAVEQQRLRKKVTDLM 300
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL+QVR IVK S+PWGQDA KVG RLI L + TA+IQPP Q D PDIRPA
Sbjct: 301 KKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPA 360
Query: 367 FVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G
Sbjct: 361 FRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGA 420
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
H FLPSYVMRTHGARQQR+ +K PR Q++ VF+AL+TLGSTKWRVNKR+L ++DR+W++
Sbjct: 421 HLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSN 480
Query: 486 GGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
GG LA LVD+ DVP+PEKP+T+DET +K WKW ++ AKK+NSE+HSQRCD+ELKL+VARK
Sbjct: 481 GGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARK 540
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF EG PLGK+GL WLKIHLAN
Sbjct: 541 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLAN 600
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LYA GVDKLSY+GR+AF ENHL++IFDSADRPLEGRRW LGAEDPFQCLA C+NL+EALR
Sbjct: 601 LYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCLAVCMNLTEALR 660
Query: 666 SPSPESTISHIPVH 679
S SPE+TISHIPVH
Sbjct: 661 SSSPETTISHIPVH 674
>gi|297811707|ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1009
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/691 (59%), Positives = 500/691 (72%), Gaps = 34/691 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLL----------DSSCPLLGFR 50
MWRN+A+Q+ R+ S + S+T FL +S E++ L S C +GFR
Sbjct: 40 MWRNIAKQAILRSATRS-NVGSKTRGFLG--SSPESKNLSFRFPVFGSISGSPCYEMGFR 96
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ + F++S +R YAS AE + S + EE E+ + E
Sbjct: 97 SLSGITRR------DEFSKSERCLNGTLARGYASVAEEVLS----TDVEEEPEVHELLKE 146
Query: 111 KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQ 170
S + K++ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCEQ
Sbjct: 147 MKKEKKRESHRSWRMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQ 206
Query: 171 KLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKL 230
KLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHKL
Sbjct: 207 KLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKL 266
Query: 231 VGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+G LMT G V+VV AAC +G+AIE E RI +F T+KK +N G+ E T+
Sbjct: 267 MGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDKTRKKKGDENEESGEVENGTS-- 324
Query: 289 EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TAY
Sbjct: 325 ---MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAY 381
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
IQ P DQ + PD+RPAFVHT + A GR+YGVIECDPLVRKGLEK+GR+ +IPY
Sbjct: 382 IQSPADQQDNDLPDVRPAFVHTFRI----ANSGRKYGVIECDPLVRKGLEKSGRYAVIPY 437
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
MPMLVPPL W GY++G + FL SY+M+THG++QQRE +K P+ QL PVF+ALDTLGSTK
Sbjct: 438 MPMLVPPLKWSGYDKGAYLFLASYIMKTHGSKQQREALKSAPKGQLLPVFEALDTLGSTK 497
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSE 528
WRVNKR+L V+DR+W+SGGC A LVD+ DVPLPEKP+T+DE +KKWKW+VK+AKK NSE
Sbjct: 498 WRVNKRVLTVVDRIWSSGGCTADLVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSE 557
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
+HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRGVLEF EG
Sbjct: 558 RHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEG 617
Query: 589 HPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAE 648
PLG +GL WLKIHLANLYAGGVDKLS +GR+AFTENHL+DIFDSADRPLEG RWWL AE
Sbjct: 618 RPLGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLEDIFDSADRPLEGSRWWLQAE 677
Query: 649 DPFQCLATCINLSEALRSPSPESTISHIPVH 679
DPFQCLA CINL+EALRSPSPE+ +SHIP+H
Sbjct: 678 DPFQCLAVCINLTEALRSPSPETVLSHIPIH 708
>gi|334187707|ref|NP_001190318.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|332004811|gb|AED92194.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1051
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/692 (59%), Positives = 501/692 (72%), Gaps = 34/692 (4%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ALDTLGST
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
KWRVNKR+L V+DR+W+SGGC+A +VD+ DVPLPEKP+T+DE +KKWKW+VK+AKK NS
Sbjct: 499 KWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNS 558
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E+HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRGVLEF E
Sbjct: 559 ERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAE 618
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+G +GL WLKIHLANLYAGGVDKLS +GR+AFTENHLDDIFDSADRPLEG RWWL A
Sbjct: 619 GRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQA 678
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDPFQCLA CI+L+EALRSPSPE+ +SHIP+H
Sbjct: 679 EDPFQCLAVCISLTEALRSPSPETVLSHIPIH 710
>gi|2326363|emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/692 (59%), Positives = 501/692 (72%), Gaps = 34/692 (4%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
YMPMLVPPL W GY++G + FL SY+MRTHGA+QQRE +K P+ QL+PVF+ALDTLGST
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
KWRVNKR+L V+DR+W+SGGC+A +VD+ DVPLPEKP+T+DE +KKWKW+VK+AKK NS
Sbjct: 499 KWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNS 558
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E+HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRGVLEF E
Sbjct: 559 ERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAE 618
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+G +GL WLKIHLANLYAGGVDKLS +GR+AFTENHLDDIFDSADRPLEG RWWL A
Sbjct: 619 GRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQA 678
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDPFQCLA CI+L+EALRSPSPE+ +SHIP+H
Sbjct: 679 EDPFQCLAVCISLTEALRSPSPETVLSHIPIH 710
>gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; Flags: Precursor
gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]
gi|332004810|gb|AED92193.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1011
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/692 (59%), Positives = 501/692 (72%), Gaps = 34/692 (4%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ALDTLGST
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
KWRVNKR+L V+DR+W+SGGC+A +VD+ DVPLPEKP+T+DE +KKWKW+VK+AKK NS
Sbjct: 499 KWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNS 558
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E+HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRGVLEF E
Sbjct: 559 ERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAE 618
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+G +GL WLKIHLANLYAGGVDKLS +GR+AFTENHLDDIFDSADRPLEG RWWL A
Sbjct: 619 GRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQA 678
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDPFQCLA CI+L+EALRSPSPE+ +SHIP+H
Sbjct: 679 EDPFQCLAVCISLTEALRSPSPETVLSHIPIH 710
>gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 984
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/703 (57%), Positives = 508/703 (72%), Gaps = 44/703 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSK--VSQTTNFLKKITS------LETQTLLDSSCPLLGFRRT 52
MW+ +A++ RN +F P +S+ L + L + + SS P G
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 53 SFLSSQKSNLGQSNFTQSIYPFGVLTSR---------SYASAAEAIAS---ESELSGSEE 100
S+ L Q ++ +S + FG + +R Y+S AEA++S + + S +
Sbjct: 61 GVGRSEI--LSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGK 118
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQE + + ++ +++ K GMG KY ML+RRQ+ IE EAWE AAKEY
Sbjct: 119 VQESVQEMSK------------EEKRLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEY 166
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLPA 219
++LL DMC+QKLAPNLPYVKSLFLGWFEP +DAI K+Q Q+ K YAPYF LPA
Sbjct: 167 RELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPA 226
Query: 220 DMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277
D M+VITMHKL+GLLM + G VRVVQAAC IG+AIE E RI F + K++ +N
Sbjct: 227 DKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDN- 285
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
E + +P D E+ KEQE+L+K+VT+LIKK+K I K DS+PWG++ KVG
Sbjct: 286 ENNDQP---DIER--KEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGA 340
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR-RYGVIECDPLVRKG 396
RLI+LL++TAYIQPP DQL D PPD RPAFVH+LK+ K+ R GVIECDPLV KG
Sbjct: 341 RLIELLIQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKG 400
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP 456
L+ T R ++IPYMPML+PP+ WRGY++GGH LPS+ MRTHGA+QQR+ K TP+ QL P
Sbjct: 401 LDWTARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTP 460
Query: 457 VFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWK 516
VF+ALDTLG+TKWR+NKRIL V++R+W SGG LAGLVDQ+DVPLPEKP+T+DET IKKWK
Sbjct: 461 VFEALDTLGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWK 520
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
W+V++ KK+N E+HSQRCDIELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGS
Sbjct: 521 WEVRSVKKENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGS 580
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DLCRG+LEF EG L K+GL WLKIHLANL+AGGVDKLS++GR+ F ENHL+DIFDSADR
Sbjct: 581 DLCRGILEFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADR 640
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PLEG RWW+ AEDPFQ LA C+NL+EALRS SPE+ ISHIP+H
Sbjct: 641 PLEGGRWWMNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIH 683
>gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa]
gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/554 (69%), Positives = 455/554 (82%), Gaps = 14/554 (2%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
MG+ KY L+RRQ+KIE EAWEQAAKEY++LL DMCE KLAPNLPY+K LFLGWFEPLRD
Sbjct: 1 MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQI 250
AIAK+Q + + Y+PYF+ LPADMM+VITMHKL ++M G RVV AAC I
Sbjct: 61 AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120
Query: 251 GEAIENEARIQSFFKSTKKK----NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
G+AIE E RI +F + T+KK + + N++EG+S + N E+EKL+K+VT LI
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMN-------EEEKLRKKVTDLI 173
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL VR IVKGH DSK W DA KVG RLI+LL++TAYIQPP DQL DSPPD+RPA
Sbjct: 174 KKQKLPAVRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPA 233
Query: 367 FVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
FVHT ++ + E K R+YGVI+CD LV KGLE+T RH++IPYMPMLVPPL WRGY++G
Sbjct: 234 FVHTFRTVSYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGA 293
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
H FLPSYVMR HGA+QQRE +K TP+ QL+ VF+ALDTLG+TKWRVNKR+L V+DR+W +
Sbjct: 294 HLFLPSYVMRIHGAKQQREAVKRTPKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNN 353
Query: 486 GGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
GG LA LVD+ DVPLPEKP T+DE +KKWKWKVK+ KK+N E+HS+RCD ELK++VARK
Sbjct: 354 GGRLADLVDRSDVPLPEKPETEDEALLKKWKWKVKSVKKENRERHSRRCDTELKIAVARK 413
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
MK+EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLAN
Sbjct: 414 MKNEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN 473
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
L+A GVDKLS+EGR+AFTENHLDDIFDSAD+PLEG+RWWL AEDPFQCLA CINL+EALR
Sbjct: 474 LFACGVDKLSHEGRIAFTENHLDDIFDSADKPLEGKRWWLHAEDPFQCLAVCINLTEALR 533
Query: 666 SPSPESTISHIPVH 679
S SPE+ +SHIP+H
Sbjct: 534 SSSPETCLSHIPIH 547
>gi|356523672|ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/597 (65%), Positives = 465/597 (77%), Gaps = 21/597 (3%)
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKK----------GTGMGTAKYYMLKRRQIKI 148
EE EL+++ G I + K+ +KK G G+G +Y L+RRQ+KI
Sbjct: 123 EERNELVEEQAAPGDGIRGLFQGMKKEKQKKVVGYNRWQNEGKGVGQCRYQELRRRQVKI 182
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETE WE+AAKEY++LL DMCE KLAPNLPY+KSLFLGWFEPLRDAI K+Q +
Sbjct: 183 ETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYGEGKNRT 242
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMT-----NAGEVRVVQAACQIGEAIENEARIQSF 263
Y PYF LPAD MAVI MHKL+GLLMT G RVVQAAC IG+AIENE RI F
Sbjct: 243 AYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATVGTARVVQAACGIGDAIENEVRIHKF 302
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ TKKK + SE + + IKE++KL+K+V L+KKQKL VRG+VKG D
Sbjct: 303 LEKTKKKKGDRSKKNKASESVAD-----IKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDD 357
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-R 382
+KPWG KVG RLI+LLM+TAYIQPP DQL D+ PDIRPAFVH+ ++ K + K +
Sbjct: 358 TKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAKVSAKASK 417
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
RYG+++CDPL+ KGLE+T ++M+IPYMPMLVPP+NW GY++GGH FLPSYVMRTHGARQQ
Sbjct: 418 RYGIVQCDPLILKGLERTAKNMVIPYMPMLVPPVNWSGYDKGGHLFLPSYVMRTHGARQQ 477
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
RE +K PR QLEPVF+ALDTLG TKWRVNK++L V+DR+WASGG +A LVD++DVPLP+
Sbjct: 478 REAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVDRDDVPLPD 537
Query: 503 KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRG 562
KP TDDE +IKKWKWK K+ +K+N E++SQRCDIELKL+VARKMKDEEGFYYPHNLDFRG
Sbjct: 538 KPVTDDEEKIKKWKWKCKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYYPHNLDFRG 597
Query: 563 RAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAF 622
RAYPMHP+LNHLGSDLCRG+LEF EG LGK+GL WLKIHLANLYAGGVDKLS+EGR+ F
Sbjct: 598 RAYPMHPHLNHLGSDLCRGILEFAEGRFLGKSGLQWLKIHLANLYAGGVDKLSHEGRLVF 657
Query: 623 TENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
TENH +DIFDSAD+PL+GRRWWL AEDP QCLA CI L+EALRS SPE+ ISHIPVH
Sbjct: 658 TENHFEDIFDSADKPLQGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFISHIPVH 714
>gi|449482235|ref|XP_004156222.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 958
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/703 (57%), Positives = 503/703 (71%), Gaps = 44/703 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSK--VSQTTNFLKKITS------LETQTLLDSSCPLLGFRRT 52
MW+ +A++ RN +F P +S+ L + L + + SS P G
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 53 SFLSSQKSNLGQSNFTQSIYPFGVLTSR---------SYASAAEAIAS---ESELSGSEE 100
S+ L Q ++ +S + FG + +R Y+S AEA++S + + S +
Sbjct: 61 GVGRSEI--LSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGK 118
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQE + + ++ +++ K GMG KY ML+RRQ+ IE EAWE AAKEY
Sbjct: 119 VQESVQEMSK------------EEKRLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEY 166
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLPA 219
++LL DMC+QKLAPNLPYVKSLFLGWFEP +DAI K+Q Q+ K YAPYF LPA
Sbjct: 167 RELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPA 226
Query: 220 DMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277
D M+VITMHKL+GLLM + G VRVVQAAC IG+AIE E RI F + K++ +N
Sbjct: 227 DKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDN- 285
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
E + +P D E+ KEQE+L+K+ L K+K I K DS+PWG++ KVG
Sbjct: 286 ENNDQP---DSER--KEQERLRKKXDQLDXKKKHLAAGQIAKRADDSRPWGRELKAKVGA 340
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR-RYGVIECDPLVRKG 396
RLI+LL++TAYIQPP DQL D PPD RPAFVH+LK+ K+ R GVIECDPLV KG
Sbjct: 341 RLIELLIQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKG 400
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP 456
L+ T R ++IPYMPML+PP+ WRGY++GGH LPS+ MRTHGA+QQR+ K TP+ QL P
Sbjct: 401 LDWTARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTP 460
Query: 457 VFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWK 516
VF+ALDTLG+TKWR+NKRIL V++R+W SGG LAGLVDQ+DVPLPEKP+T+DET IKKWK
Sbjct: 461 VFEALDTLGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWK 520
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
W+V++ KK+N E+HSQRCDIELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGS
Sbjct: 521 WEVRSVKKENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGS 580
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DLCRG+LEF EG L K+GL WLKIHLANL+AGGVDKLS++GR+ F ENHL+DIFDSADR
Sbjct: 581 DLCRGILEFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADR 640
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PLEG RWW+ AEDPFQ LA C+NL+EALRS SPE+ ISHIP+H
Sbjct: 641 PLEGGRWWMNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIH 683
>gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/705 (55%), Positives = 499/705 (70%), Gaps = 36/705 (5%)
Query: 1 MWRNLARQSSTR--NFKFSPSKVSQTTNFLK-----------KITSLETQTLLDSSCPLL 47
MWRN A+Q+ +R N +S++ +FL K E + S +
Sbjct: 41 MWRNFAKQAISRTPNLCLRKFSISRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSFSEV 100
Query: 48 GFRRTSFLSSQKSNLGQSNFTQSI---YPFGVLTSRSYASAAEAIAS-----ESELSGSE 99
GF R S K +G+ + + F V+ + YAS EA E ++S +
Sbjct: 101 GFCREGG-SLVKEGIGERPVSGCLGNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSVFD 159
Query: 100 EVQELIDQF--NEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAA 157
E+QEL+++ EK +S ++ +K GM KY L+ RQIK+ETE+W+QAA
Sbjct: 160 EIQELVEEMRKEEKRAKWRESH----QRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAA 215
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNL 217
EY++LLADMC+ KLAPNLPYVKSLFLGWFEP RD+I +DQ + Y YF+ L
Sbjct: 216 NEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQL 275
Query: 218 PADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDN 275
PADMMA+ITMHKL+G+LMT +G V+VVQAAC +GEAIE E RI +F + KKK +
Sbjct: 276 PADMMAIITMHKLMGMLMTGSGHGSVKVVQAACALGEAIEQEVRIHTFLEKAKKKKGDRS 335
Query: 276 NLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKV 335
D+ +D E I+EQ+ L+K V +LIKKQK +Q IV D KPWG + KV
Sbjct: 336 KKPDDA---ASDAE--IQEQQHLRKNVNNLIKKQKRRQALKIVDSQGDLKPWGSETRAKV 390
Query: 336 GCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVR 394
G RLI+LL++TAYIQPP Q PPD+RPAFVH+LKS E K GRR+G+IECDPL+
Sbjct: 391 GSRLIELLIQTAYIQPPASQSACDPPDLRPAFVHSLKSVGPENKKTGRRFGMIECDPLII 450
Query: 395 KGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
KGLEKT RH++IPYMPMLVPP W GY++G + L S+VMRTHG++ QR ++ QL
Sbjct: 451 KGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRSFVMRTHGSKHQRVAVRRASEEQL 510
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKK 514
+ VF+ALDTLG+TKWRVNK++L ++DR+WA+GG LA LVD++DVPLPEKP+T+DE+E+K+
Sbjct: 511 KSVFEALDTLGNTKWRVNKKVLSIVDRVWANGGRLADLVDRDDVPLPEKPDTEDESELKR 570
Query: 515 WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 574
WKWKV++ KK+N E+HSQRCD+ELKL+VARKMKDEEGF+YPHN+DFRGRAYPMHPYLNHL
Sbjct: 571 WKWKVRSLKKENRERHSQRCDVELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPYLNHL 630
Query: 575 GSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSA 634
GSD+CRG+LEF EG +GK+GL WLKIH+ANLYAGG+DKLS EGR+AFTENHLDDIFDS
Sbjct: 631 GSDMCRGILEFAEGRAVGKSGLRWLKIHVANLYAGGIDKLSLEGRIAFTENHLDDIFDSV 690
Query: 635 DRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
D+PLEGR WWL AEDPFQCLA CI L+EALRS PE+ SHIPVH
Sbjct: 691 DKPLEGRCWWLKAEDPFQCLAVCIELAEALRSTRPEAFKSHIPVH 735
>gi|308026130|emb|CBL69150.1| RNA polymerase [Nuphar advena]
Length = 985
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/551 (63%), Positives = 442/551 (80%), Gaps = 13/551 (2%)
Query: 135 TAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI 194
++KY +L+RRQ+K+ETEAWE AA+EY++L+ +MCE+KLAP+LPYVKSLFLGWFEP RDAI
Sbjct: 143 SSKYNLLRRRQVKMETEAWEDAAREYRELIKEMCEKKLAPHLPYVKSLFLGWFEPFRDAI 202
Query: 195 AKDQATAQDKWKHMT--YAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQI 250
+DQ + + K++ YAP+ +LPADMMAVI MHK++ LLM + G VR+V AAC I
Sbjct: 203 KEDQELQRRRKKNLAAAYAPFIGHLPADMMAVIVMHKMMVLLMNGQDDGCVRLVHAACHI 262
Query: 251 GEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
GEAIE E RI +FF+ KK +++ L+ + E K QE L+KRVT+L+KK+K
Sbjct: 263 GEAIEQEVRIYNFFQKIKKSTR-------ENQILSENHENESKNQEALRKRVTNLLKKKK 315
Query: 311 LQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHT 370
++ V+ +V+ D +PWG+D+ K+G R I LL++T Y+QPP++QL + PP+IRPAF HT
Sbjct: 316 IRDVQLLVEAD-DVEPWGRDSHAKLGSRXIDLLIQTXYVQPPLNQLAZGPPEIRPAFRHT 374
Query: 371 LKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
K+ KE +RYG+IECDPLVRKGL+ T RH++IPYMPML+PP W GY++GGH FL
Sbjct: 375 FKTXKKEXDNSVKRYGIIECDPLVRKGLDATARHLVIPYMPMLIPPKKWTGYDKGGHLFL 434
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL 489
PSYVMRTHGA+QQR+ +K P+ QL+ VF+ALDTLGSTKWRVNKR+L VID +WASG +
Sbjct: 435 PSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLGSTKWRVNKRVLDVIDSLWASGRPI 494
Query: 490 AGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
AGLVD D+ LPEKP T+DE ++++W+W VK KK+N E+H+QRCDIELKLSVARKM+ E
Sbjct: 495 AGLVDHSDIALPEKPCTEDEAQMRRWRWSVKKVKKENCERHAQRCDIELKLSVARKMRKE 554
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
+GFYYPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF EG PLGK GL WLKIHLANLY G
Sbjct: 555 DGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGKPLGKTGLRWLKIHLANLYGG 614
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
GVDKLS++GR+ F ENHL DIFDSA+RP+EGR+WWL AEDPFQCLA CI+LS AL+S SP
Sbjct: 615 GVDKLSFDGRLTFVENHLADIFDSAERPIEGRQWWLNAEDPFQCLAACIDLSXALKSSSP 674
Query: 670 ESTISHIPVHM 680
E ISHIPVH+
Sbjct: 675 EDAISHIPVHL 685
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/546 (63%), Positives = 431/546 (78%), Gaps = 14/546 (2%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y +L+RRQ+K ETEAWE+ +EY+++ +MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+
Sbjct: 143 YGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKE 202
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIE 255
Q + K + YAP+ LPAD MAVI MHK++GL+M G VRVVQAA QIG AIE
Sbjct: 203 QRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIE 262
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E RI SF + TK N + G S+ + ++E+E L+KRV S I+K+K+ +V+
Sbjct: 263 QEVRIHSFLEKTK--NFERHKTVGHSQ-------EGLREKEILRKRVKSFIRKKKIIEVQ 313
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
+VK + PWG+D K+G RLI+LL ETAY+Q PV+Q D PPD+RPAF HT K+ T
Sbjct: 314 KLVKNE-EITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVT 372
Query: 376 KEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV 433
KE+ + R+YGVIECDPLV GL++T +HM+IPY+PML+PP W+GY++GG+ FLPSYV
Sbjct: 373 KESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYV 432
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
MRTHG+R+Q++ +K PR QL+ VF+ALDTLG+TKWR+N+R+L V++ +WA GG L GLV
Sbjct: 433 MRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLV 492
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
D+E+VPLPEKP+T+D TEI+ WKW + AKK N E+HS RCD E+KLSVARKMKDEEGFY
Sbjct: 493 DRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFY 552
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
YPHNLDFRGRAYPMHP+LNHL SDLCRGVLEF EG PLGK+GL WLKI LANLYAGGV+K
Sbjct: 553 YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEK 612
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
LSY+GR+AF +NHLDD+FDSAD PL G RWWL AEDPFQCLA CINLSEALRS SP + I
Sbjct: 613 LSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVI 672
Query: 674 SHIPVH 679
SH+P+H
Sbjct: 673 SHLPIH 678
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa]
Length = 882
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/549 (61%), Positives = 429/549 (78%), Gaps = 17/549 (3%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A EY+ L+ +MCE+KLAPNLPYVK L LGWFEPL++AI K
Sbjct: 44 KYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEK 103
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GLLM G VRVVQAA QIG AI
Sbjct: 104 EQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAI 163
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E RI +F + TK ++ T + ++ E + KE+E L+KRV SLI++++L
Sbjct: 164 EQEVRIHNFLEKTKNYQRKKTMHEVQ----------ETMDKEKEVLRKRVNSLIRRKRLM 213
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+V+ +VK ++KPW + K+G RLI+LL ETAY+QPPV+Q D PPD+RPAF H K
Sbjct: 214 EVQNLVKQD-ETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFK 272
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
+ TK + ++YGVIECDPL+ GL+ T +HM+IPY PMLVPP W+GY++GGH FLP
Sbjct: 273 TLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLP 332
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
SYVMRTHG+RQQ+ ++ P Q++ VF+ALDTLG+TKWRVN+R+L V++R+W SGG +A
Sbjct: 333 SYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIA 392
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
GLVD+ED+P+PEKP++DD TEI+KWKW V+ AKK N E+HSQRCD ELKLSVARK+KDEE
Sbjct: 393 GLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEE 452
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
GFYYPHNLDFRGRAYPMHP+L HL SDLCRGVLEFEEG PLGK+GL WLKIHLANLY+GG
Sbjct: 453 GFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGG 512
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
V+KLS++GR+AF ENHL +IFDSA P+ G+RWWL AEDPFQCLA CINLSEAL S SP
Sbjct: 513 VEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPH 572
Query: 671 STISHIPVH 679
+ ISH+P+H
Sbjct: 573 TVISHLPIH 581
>gi|449493526|ref|XP_004159332.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 764
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/475 (70%), Positives = 397/475 (83%), Gaps = 21/475 (4%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFK 265
++A YF+ LPADMMAVITMHKL+GLLM++ G VRV QAA IGEAIENE RI++FF+
Sbjct: 6 SHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFE 65
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
TKK+ PE+L + +KL+K++T L+K+QKLQ+V IVK H DSK
Sbjct: 66 KTKKQ-----------------PEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSK 108
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRY 384
PWG DA VKVGCRLIQLL+ETAYIQPPVDQ+GD+PPD+RPAFVH+LK+ KE+ + G+RY
Sbjct: 109 PWGTDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRY 168
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
GVIECDPLV +G+ KT HMIIPYMPMLVPP W GY++G HFFLPSYVMR GARQQRE
Sbjct: 169 GVIECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQRE 228
Query: 445 TIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP 504
+K + QL PVF+ALD LGSTKWRVNKR+L VI+++WASGG LA LVD+ED+PLPE+P
Sbjct: 229 AVKRASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQP 288
Query: 505 NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRA 564
+DE EI+ WKWKVK K++NSE+HSQRCD ELKL+VARKMK+EEGFYYPHNLDFRGRA
Sbjct: 289 MVEDEAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRA 348
Query: 565 YPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTE 624
YPMHP+LNH+GSD CRG LEF EG PLG++GL WLKIHLANLYAGGVDKLSY+ R++FTE
Sbjct: 349 YPMHPHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTE 408
Query: 625 NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
NHLD+IFDSADRPLEG RWWLGAEDPFQCLA CI+LSEALRSPSPE+TISH+PVH
Sbjct: 409 NHLDEIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVH 463
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa]
gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/549 (61%), Positives = 430/549 (78%), Gaps = 17/549 (3%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A+EY L+ +MCE+KLAPNLPYVKSLFLGWFEPL++AI +
Sbjct: 144 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 203
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GL+M G VRVVQAA QIG AI
Sbjct: 204 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 263
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E RI +F + TK ++ T ++++ E + KE+E L+KRV SLI++++L
Sbjct: 264 EQEVRIHNFLEKTKNHQRKKTMHDVQ----------ESMDKEKEMLRKRVNSLIRRKRLM 313
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+V+ +V ++KPW +D K+G RLI+LL ETAY+QPPVDQ PPD+RPAF H K
Sbjct: 314 EVQNLVIQD-ETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFK 372
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
S TK + ++YGVIECDPL+ GL+ T +HM+IPY PMLVPP WRGY++GGH FLP
Sbjct: 373 SVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLP 432
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
SY+MRTHG+RQQ++ ++ P Q++ VF+ALDTLG+TKWRVN ++L V++R+WASGG A
Sbjct: 433 SYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNA 492
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
GLV++ D+P+PEK ++DD TEI+KWKW V+ AKK N E+HSQRCD ELKLSVARK+KDEE
Sbjct: 493 GLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEE 552
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
GFYYPHNLDFRGRAYPMHP+L HL SDLCRGVLEF EG PLGK+GL WLKIHLANLY+GG
Sbjct: 553 GFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGG 612
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
V+KLS++GR+AF ENHL +IFDSA+ P+ G+RWWL AEDPFQCLA CINLSEAL+S SP
Sbjct: 613 VEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPH 672
Query: 671 STISHIPVH 679
+ ISH+P+H
Sbjct: 673 TVISHLPIH 681
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/517 (64%), Positives = 408/517 (78%), Gaps = 14/517 (2%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+Q + K + YAP+ LPAD MAVI
Sbjct: 1 MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60
Query: 227 MHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHK++GL+M G VRVVQAA QIG AIE E RI SF + TK N + G S+
Sbjct: 61 MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK--NFERHKTVGHSQ-- 116
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
+ ++E+E L+KRV S I+K+K+ +V+ +VK + PWG+D K+G RLI+LL
Sbjct: 117 -----EGLREKEILRKRVKSFIRKKKIIEVQKLVKNE-EITPWGRDTQAKLGSRLIELLT 170
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGR 402
ETAY+Q PV+Q D PPD+RPAF HT K+ TKE+ + R+YGVIECDPLV GL++T +
Sbjct: 171 ETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAK 230
Query: 403 HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
HM+IPY+PML+PP W+GY++GG+ FLPSYVMRTHG+R+Q++ +K PR QL+ VF+ALD
Sbjct: 231 HMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALD 290
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
TLG+TKWR+N+R+L V++ +WA GG L GLVD+E+VPLPEKP+T+D TEI+ WKW + A
Sbjct: 291 TLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKA 350
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
KK N E+HS RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRGV
Sbjct: 351 KKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 410
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
LEF EG PLGK+GL WLKI LANLYAGGV+KLSY+GR+AF +NHLDD+FDSAD PL G R
Sbjct: 411 LEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNR 470
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WWL AEDPFQCLA CINLSEALRS SP + ISH+P+H
Sbjct: 471 WWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIH 507
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
AltName: Full=NsRpoT-C; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3;
Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor
gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum]
gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 977
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/541 (61%), Positives = 419/541 (77%), Gaps = 17/541 (3%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +AGLVD++DV
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDV 496
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P+PE ++DD E+KKWKW+V+ +KK N E HSQRCD ELKLSVARK+KDEEGFYYPHNL
Sbjct: 497 PIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNL 555
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGG++KL Y+
Sbjct: 556 DFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDA 615
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R+AF ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP + SH+P+
Sbjct: 616 RLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPI 675
Query: 679 H 679
H
Sbjct: 676 H 676
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/547 (60%), Positives = 425/547 (77%), Gaps = 15/547 (2%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE+ +EY++L +MCE+KLAPNLPYVK LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q T + K + +AP+ L AD MAVI M+K++GLLM A G V+VVQAA QIG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RIQS + + T + D+E LT KE+E L+K+V LI+++KL++V
Sbjct: 259 EQEVRIQSILEKARSNQRT--KVRADTECLT-------KEKEVLRKQVNGLIRRRKLKEV 309
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ ++K + K WG+D K+G RLI+LL+E+A+IQPPV Q DSPPDIRPAF H K
Sbjct: 310 QKLLKKE-EFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPV 368
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K + ++YGV+ECDP+V GL++T +HM+IPY+PMLVPP W+GY++GGHFFLPSY
Sbjct: 369 AKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSY 428
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL 492
VMRTHG+ +Q++ +K Q++ VF+ALD LGSTKWRVN+ +L V++ +WA GG AGL
Sbjct: 429 VMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGL 488
Query: 493 VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
VD++DVP+PEKP D TE+++W+W +K AKK N E HSQRCD+ELKLSVARKMKDEEGF
Sbjct: 489 VDRKDVPIPEKP-LGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGF 547
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
YYPHNLDFRGRAYPMHP+LNHL SDLCRGVLEF EG PLGK+GLHWLKIHLANLYAGGV+
Sbjct: 548 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 607
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
KLSY+ R+AF ++HLD+IFDSA P+ G RWWL AEDPFQCLA C+NLSEAL+S +P +
Sbjct: 608 KLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTV 667
Query: 673 ISHIPVH 679
IS++P+H
Sbjct: 668 ISYLPIH 674
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 989
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/549 (59%), Positives = 419/549 (76%), Gaps = 19/549 (3%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE +EY++ + +M ++KLAPNLP VK+LFLGWFEPL+ AI K
Sbjct: 153 KYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEK 212
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAI 254
+Q + + + + Y + + LPAD MAVI MHK++ LLM +AG VR+VQAA QIG AI
Sbjct: 213 EQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAI 272
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E +I SF + TK +KNA+D PE L+KE+E + RV SLIK+++L
Sbjct: 273 EQEIKIHSFLEKTKNIRKNASDL------------PEDLLKEKEIQRNRVKSLIKRKRLF 320
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+ +V DSK W QD K+G RLI+LL++TAYIQ P Q D+PPD+RPAF H K
Sbjct: 321 EAAKLVTSE-DSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFK 379
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
E + +RYGVIECDPLV KG++++ R+MIIPY+PML+PP NW+GY++GG+ FLP
Sbjct: 380 ILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLP 439
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
SYVMRTHG+R+Q++ ++ TP Q++ VF+AL+TLG TKWR+N+++LGV++ +WASGG +
Sbjct: 440 SYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIG 499
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
GLV+ +DVPLPEKP T+D EI WKW V+ AKK N E+H+ RCD+ELK+SVA+KMKDEE
Sbjct: 500 GLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEE 559
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
GFYYPHNLDFRGRAYPMHP+LNHL SDLCRGVLEF G PLGK GLHWLKIHLAN+YAGG
Sbjct: 560 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGG 619
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
VDKLSYE R AF ENHL+++FDSA P+ G RWWL AEDPFQCLA CI+L+ AL S SP
Sbjct: 620 VDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPH 679
Query: 671 STISHIPVH 679
S IS++P+H
Sbjct: 680 SFISYLPIH 688
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/547 (60%), Positives = 424/547 (77%), Gaps = 15/547 (2%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE+ +EY++L +MCE+KLAPNLPYVK LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q T + K + +AP+ L AD MA I M+K++GLLM A G V+VVQAA QIG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RIQS + + T + D+E LT KE+E L+K+V LI+++KL++V
Sbjct: 259 EQEVRIQSILEKARSNQRT--KVRADTECLT-------KEKEVLRKQVNGLIRRRKLKEV 309
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ ++K + K WG+D K+G RLI+LL+E+A+IQPPV Q DSPPDIRPAF H K
Sbjct: 310 QKLLKKE-EFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPV 368
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K + ++YGV+ECDP+V GL++T +HM+IPY+PMLVPP W+GY++GGHFFLPSY
Sbjct: 369 AKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSY 428
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL 492
VMRTHG+ +Q++ +K Q++ VF+ALD LGSTKWRVN+ +L V++ +WA GG AGL
Sbjct: 429 VMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGL 488
Query: 493 VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
VD++DVP+PEKP D TE+++W+W +K AKK N E HSQRCD+ELKLSVARKMKDEEGF
Sbjct: 489 VDRKDVPIPEKP-LGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGF 547
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
YYPHNLDFRGRAYPMHP+LNHL SDLCRGVLEF EG PLGK+GLHWLKIHLANLYAGGV+
Sbjct: 548 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 607
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
KLSY+ R+AF ++HLD+IFDSA P+ G RWWL AEDPFQCLA C+NLSEAL+S +P +
Sbjct: 608 KLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTV 667
Query: 673 ISHIPVH 679
IS++P+H
Sbjct: 668 ISYLPIH 674
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
Length = 990
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/567 (57%), Positives = 427/567 (75%), Gaps = 20/567 (3%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 137 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 196
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 197 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 256
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 257 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 303
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 304 KQLLRKRVNSLIRRKRIIDALKVVKTE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 362
Query: 355 QLGDSPPDIRPAFVHTLKSFTKE--ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK + RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 363 QSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 422
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ ++ VF+ALDTLG+TKWRVN
Sbjct: 423 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTKWRVN 482
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D EI+ WKW V+ A K N E+HS
Sbjct: 483 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSL 542
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 543 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 602
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANL+AGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 603 KSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 662
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
CLA C+ L++ALRSPSP S ISH+P+H
Sbjct: 663 CLAACVILTQALRSPSPYSVISHLPIH 689
>gi|110740738|dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 786
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/567 (57%), Positives = 425/567 (74%), Gaps = 20/567 (3%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+ALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D E++ WKW + A K N E+HS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANLYAGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
CLA C+ L++AL+SPSP S ISH+P+H
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIH 692
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor
gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/567 (57%), Positives = 425/567 (74%), Gaps = 20/567 (3%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+ALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D E++ WKW + A K N E+HS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANLYAGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
CLA C+ L++AL+SPSP S ISH+P+H
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIH 692
>gi|79602097|ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 895
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/567 (57%), Positives = 425/567 (74%), Gaps = 20/567 (3%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+ALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D E++ WKW + A K N E+HS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANLYAGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
CLA C+ L++AL+SPSP S ISH+P+H
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIH 692
>gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
AltName: Full=NictaRpoT3-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3B;
Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/541 (61%), Positives = 418/541 (77%), Gaps = 16/541 (2%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 204
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 205 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 264
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + KE L+KRV SLIK+ ++ +VR ++K
Sbjct: 265 HNFLEKTKK---LQKHMTG-----AQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS 316
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+Q PVDQ D+PPDIRPAF H K T++ K
Sbjct: 317 E-EPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGK 375
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 376 NIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 435
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +AGLVD++DV
Sbjct: 436 SRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDV 495
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P+PE N+DD E+KKWKWKV+ +KK N E HSQRCD ELKLSVARK+KDEEGFYYPHNL
Sbjct: 496 PIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNL 555
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGGV+KL Y+
Sbjct: 556 DFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDA 615
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R+AF ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP + ISH+P+
Sbjct: 616 RLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPI 675
Query: 679 H 679
H
Sbjct: 676 H 676
>gi|357123259|ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/541 (58%), Positives = 409/541 (75%), Gaps = 15/541 (2%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
+RQ+K ETEAW +AA+EY+ L +M ++ LAP+LPYVKSLFLGWFEPLRDAIA+DQ +
Sbjct: 113 QRQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAIARDQEVQR 172
Query: 203 DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEAR 259
K YA Y LPA+ ++VI MHK++GLLM+N G VRVVQAA IGEA+E E +
Sbjct: 173 RKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMSNKDGCGSVRVVQAAHSIGEAVEREFK 232
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
+Q+FF+ T+KK N DP L KEQ K +K V SL+K++KL + + +V+
Sbjct: 233 VQAFFQKTRKKGKNGEN----------DP-ALGKEQAKCRKLVKSLVKRRKLTEAQKLVQ 281
Query: 320 GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL-KSFTKEA 378
++ + WG +A VK+G RLI+LL+++A++Q P DQ+ DS PD RPAF H L K +
Sbjct: 282 QEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQIPDSSPDFRPAFKHVLRKPIVENG 341
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSYVMRTHG
Sbjct: 342 RLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHG 401
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+ Q+E IK PR QL VF+ALD LG TKWRVN+R+ V++ +W+ GG +AGLVD+ D+
Sbjct: 402 VKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGDI 461
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
PLPE+P ++D EI+KWKW +K AKK N E H++RCD ELKLSVARKM++E+GFYYPHNL
Sbjct: 462 PLPERPESEDPDEIQKWKWSLKKAKKINRELHAERCDTELKLSVARKMREEDGFYYPHNL 521
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG++KLS+
Sbjct: 522 DFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHGS 581
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
++AF ENHL DIFDSA P++G RWW+ AEDPFQCLA C++LS AL+S SP + ISH+P+
Sbjct: 582 KLAFVENHLPDIFDSAANPVDGNRWWINAEDPFQCLAACVDLSNALKSSSPHTAISHLPI 641
Query: 679 H 679
H
Sbjct: 642 H 642
>gi|30698496|dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group]
gi|37360971|dbj|BAC98394.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
Length = 953
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/548 (57%), Positives = 416/548 (75%), Gaps = 16/548 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA
Sbjct: 117 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 176
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGE
Sbjct: 177 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 236
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T+KK+A +N+L L KEQ K +KRV SL++++KL
Sbjct: 237 AVEREFKVQTFFQKTRKKSAGENDL------------ALEKEQAKCRKRVKSLVRRRKLT 284
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+ + IV+ ++ + WG ++ VK+G RLI+LL+++A++Q P DQ +S PDIRPAF H L+
Sbjct: 285 EAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLR 344
Query: 373 S-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ +++ VIECDPLV +G E T RH+ IPY+PMLV P W+GY+ GG+ FLPS
Sbjct: 345 QPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPS 404
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
Y+MRTHG + Q+E IK PR QL VF+ALDTLGSTKWRVN+R+ ++ +W+ GG +AG
Sbjct: 405 YIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAG 464
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
LVD+E++PLPE+P T+D EI+KWKW +K AKK N E H++RCD ELKLSVARKM++E+G
Sbjct: 465 LVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTELKLSVARKMREEDG 524
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHNLDFRGRAYPMH +L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG+
Sbjct: 525 FYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGI 584
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+KLS+E +VAF EN L DIFDSA P++G WW+ AEDPFQCLA C++LS+AL+S SP+
Sbjct: 585 EKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQC 644
Query: 672 TISHIPVH 679
+SH+P+H
Sbjct: 645 AVSHLPIH 652
>gi|242093768|ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
gi|241915597|gb|EER88741.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
Length = 960
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/543 (57%), Positives = 416/543 (76%), Gaps = 15/543 (2%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++RQ+K ETEAW +AA+EY+++ +M +++LAP LPYVKSLF+GWFEPLRDAIA+DQ
Sbjct: 127 LRQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKSLFVGWFEPLRDAIARDQDV 186
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENE 257
+ K YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E
Sbjct: 187 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVERE 246
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
++QSFF+ ++KK +G+++P L KEQ K +KRV +L+K++K+ + + +
Sbjct: 247 FKVQSFFQKSRKKKD-----QGENDP------ALEKEQAKCRKRVKTLVKRRKMSEAQKL 295
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTK 376
V+ ++ + WG +A VK+G RLI+LL+++A++QPP DQ+ DS PDIRPAF H L+ +
Sbjct: 296 VQQELELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQIPDSSPDIRPAFKHVLRQPIIE 355
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+++ VIECD LV G E T RH+ IPY+PMLVPP W+GYN+GGH FLPSY+MRT
Sbjct: 356 NGRLKKKHWVIECDHLVHDGFESTARHVDIPYLPMLVPPKKWKGYNKGGHLFLPSYIMRT 415
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
HG + Q++ I PR QL VF+ALD LGSTKWRVN+R+ V++ +W+ GG +AGLVD+
Sbjct: 416 HGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSRGGGIAGLVDKA 475
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
++PLPE+P ++D E++KWKW +K AKK N E H++RCD ELKLSVARKM++E+GFYYPH
Sbjct: 476 NIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPH 535
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
NLDFRGRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GGV+KLS+
Sbjct: 536 NLDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGVEKLSH 595
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
EG++AF EN L DIFDSA P++G WW AEDPFQCLA C++LS+AL SPSP T+SH+
Sbjct: 596 EGKLAFVENQLLDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALNSPSPYRTVSHL 655
Query: 677 PVH 679
P+H
Sbjct: 656 PIH 658
>gi|5292165|gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
Length = 949
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/548 (56%), Positives = 408/548 (74%), Gaps = 12/548 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 109 ADHRRLRQRQVKAETEAWARAAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVA 168
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPA+ +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 169 RDQDVQRRKRVKHVYAKYLLLLPAEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 228
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + E NDP L KEQ K +K V SL++++K
Sbjct: 229 AVEREYKVQAFFQKTRRKTRSKTESE-------NDP-GLDKEQAKCRKLVKSLVRRRKST 280
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P DQ DS PD RPAF H L
Sbjct: 281 EAQKLVQQEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLR 340
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 341 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 400
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
YVMRTHG + Q+E IK PR QL VF+ALD LG TKWRVN+R+ V++ +W+ GG +AG
Sbjct: 401 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAG 460
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
LVD+ ++PLPE+P T+D EI+KWKW VK KK N E H++RCD ELKLSVARKM++E+G
Sbjct: 461 LVDKGNIPLPEQPETEDPDEIQKWKWSVKKTKKANRELHAERCDTELKLSVARKMREEDG 520
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHNLDFRGRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG+
Sbjct: 521 FYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGI 580
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+KLS+E ++ F E+HL DIFDSA P++G WW+ AEDPFQCLA C++LS AL S SP
Sbjct: 581 EKLSHESKLTFVEDHLPDIFDSAANPVDGNCWWINAEDPFQCLAACMDLSNALESSSPHG 640
Query: 672 TISHIPVH 679
+SH+P+H
Sbjct: 641 AVSHLPIH 648
>gi|356562547|ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 951
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/548 (56%), Positives = 415/548 (75%), Gaps = 14/548 (2%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
K +L+RRQIK ETEA E+ +EY++L +M E+ L PNLP+VK+LFLGWF+PL++AI
Sbjct: 111 KLNLLRRRQIKAETEALEKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEA 170
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEA 253
+Q + + K +AP+ ++LPA +AVI MHK++GL+ AG V +V AA QIG A
Sbjct: 171 EQKSKRSKKHKAAFAPHIDSLPAAKLAVIVMHKVMGLVTQEYRRAGCVLLVDAAVQIGMA 230
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E RI F + T+ + GD + + ND ++KL+K V LIK+++L+Q
Sbjct: 231 VEQEVRIHKFLEKTRSHQSKKTE-AGDEDSMDND-------KQKLRKHVNGLIKRRRLKQ 282
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ ++K +S PWG+D K+G RLI+LL+ETA++ PV+Q D+PPDIRPAF H K+
Sbjct: 283 VQMLLK-EKESGPWGRDTQAKLGSRLIELLIETAFVHSPVNQSADTPPDIRPAFRHKFKA 341
Query: 374 FTK--EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+K E + YGVIECDPLV G++K+ +HM++PYMPMLVPP W+GY +GGH FLPS
Sbjct: 342 ISKNPEQKILKNYGVIECDPLVLAGMDKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPS 401
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
Y+MRTHG+++Q++ +K R Q++ VF+ALDTLG+TKWRVN+R+L V++ +WA GG +AG
Sbjct: 402 YIMRTHGSKKQQDVMKNVERKQMQKVFEALDTLGNTKWRVNRRLLNVVESLWAGGGNIAG 461
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
L+D++DVP+PE+P D +I++WKW V+ A+K N E+HS RCD ELKLSVA+KMKDEEG
Sbjct: 462 LIDRKDVPIPERPPLGDLKQIQEWKWSVRKAEKINLERHSLRCDTELKLSVAQKMKDEEG 521
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHN+DFRGRAYPMH +LNHL DLCRG+LEF EG PLG++GL WLKIHLANLYAGG+
Sbjct: 522 FYYPHNVDFRGRAYPMHSHLNHLSCDLCRGLLEFAEGRPLGESGLCWLKIHLANLYAGGI 581
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+KLSY+GR+AF ENHL DIFDSAD P+ G RWWL A+DPFQCLA CINLSEALRS SP S
Sbjct: 582 EKLSYDGRLAFVENHLHDIFDSADNPINGNRWWLMADDPFQCLAACINLSEALRSSSPNS 641
Query: 672 TISHIPVH 679
I H+P+H
Sbjct: 642 VILHLPIH 649
>gi|34481851|emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/548 (56%), Positives = 412/548 (75%), Gaps = 12/548 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 108 AGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVA 167
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LP + +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + N E NDP L KEQ K +K V SL++++KL
Sbjct: 228 AVEREYKVQAFFQKTRRKTRSKNESE-------NDP-ALDKEQAKCRKLVKSLVRRRKLT 279
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P +Q D+ PD RPAF H L
Sbjct: 280 EAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLR 339
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 340 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 399
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
YVMRTHG + Q+E IK PR QL VF+ALD LG TKWRVN+R+ V++ +W+ GG +AG
Sbjct: 400 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAG 459
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
LVD+E++PLPE+P T+D EI+KW+W VK KK N E H++RCD ELKLSVARKM++E+G
Sbjct: 460 LVDKENIPLPERPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDG 519
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHNLDFRGRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG+
Sbjct: 520 FYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGI 579
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+KL++E ++AF E+ L IFDSA P++G WW+ AEDPFQCLA CI+LS+AL+S SP +
Sbjct: 580 EKLTHESKLAFVEDRLPAIFDSAANPVDGNCWWINAEDPFQCLAACIDLSDALKSSSPHA 639
Query: 672 TISHIPVH 679
+SH+P+H
Sbjct: 640 AVSHLPIH 647
>gi|3341648|emb|CAA06488.1| DNA directed RNA polymerase [Zea mays]
gi|413954906|gb|AFW87555.1| DNA-directed RNA polymerase isoform 1 [Zea mays]
gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase isoform 2 [Zea mays]
Length = 952
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/538 (57%), Positives = 412/538 (76%), Gaps = 15/538 (2%)
Query: 146 IKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKW 205
+K ETEAW +AA+EY+++ +M +++LAP LPYVK+LF+GWFEPLRDAIA+DQ + K
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQS 262
YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E ++QS
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 263 FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
FF+ ++KK ++G+++P L KEQ K +KRV SL+K++K+ + + +V+ +
Sbjct: 245 FFQKSRKKK-----IQGENDP------ALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQEL 293
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKG 381
+ + WG +A VK+G RLI+LL+++A++QPP DQ DS PDIRPAF H L+ +
Sbjct: 294 ELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLK 353
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
+++ VIECD LV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSY+MRTHG +
Sbjct: 354 KKHWVIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKD 413
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
Q++ I PR QL VF+ALD LGSTKWRVN+R+ V++ +W+ GG +AGLVD+ ++PLP
Sbjct: 414 QKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLP 473
Query: 502 EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
E+P ++D E++KWKW +K AKK N E H++RCD ELKLSVARKM++E+GFYYPHNLDFR
Sbjct: 474 ERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFR 533
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG++KLS+EG++A
Sbjct: 534 GRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLA 593
Query: 622 FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F EN L DIFDSA P++G WW AEDPFQCLA C++LS+ALRSPSP +SH+P+H
Sbjct: 594 FVENQLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIH 651
>gi|162457867|ref|NP_001104932.1| RNA polymerase2 [Zea mays]
gi|4559306|gb|AAD22977.1|AF127022_1 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/538 (57%), Positives = 412/538 (76%), Gaps = 15/538 (2%)
Query: 146 IKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKW 205
+K ETEAW +AA+EY+++ +M +++LAP LPYVK+LF+GWFEPLRDAIA+DQ + K
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQS 262
YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E ++QS
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 263 FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
FF+ ++KK ++G+++P L KEQ K +KRV SL+K++K+ + + +V+ +
Sbjct: 245 FFQKSRKKK-----IQGENDP------ALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQEL 293
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKG 381
+ + WG +A VK+G RLI+LL+++A++QPP DQ DS PDIRPAF H L+ +
Sbjct: 294 ELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLK 353
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
+++ VIECD LV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSY+MRTHG +
Sbjct: 354 KKHWVIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKD 413
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
Q++ I PR QL VF+ALD LGSTKWRVN+R+ V++ +W+ GG +AGLVD+ ++PLP
Sbjct: 414 QKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLP 473
Query: 502 EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
E+P ++D E++KWKW +K AKK N E H++RCD ELKLSVARKM++E+GFYYPHNLDFR
Sbjct: 474 ERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFR 533
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG++KLS+EG++A
Sbjct: 534 GRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLA 593
Query: 622 FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F EN L DIFDSA P++G WW AEDPFQCLA C++LS+ALRSPSP +SH+P+H
Sbjct: 594 FVENQLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIH 651
>gi|34481849|emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/548 (56%), Positives = 411/548 (75%), Gaps = 12/548 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 108 AGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVA 167
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LP + +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + N E NDP L KEQ K +K V SL++++KL
Sbjct: 228 AVEREYKVQAFFQKTRRKTRSKNESE-------NDP-ALDKEQAKCRKLVKSLVRRRKLT 279
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P +Q D+ PD RPAF H L
Sbjct: 280 EAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLR 339
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 340 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 399
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
YVMRTHG + Q+E IK PR QL VF+ALD LG TKWRVN+R+ V++ +W+ GG +AG
Sbjct: 400 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAG 459
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
LVD+E++PLPE+P T+D EI+KW+W VK KK N E H++RCD ELKLSVARKM++E+G
Sbjct: 460 LVDKENIPLPERPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDG 519
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHNLDFRGRAYPMHP+L+HLGSDLCRGVLE+ EG PLGK+GL WLKIHLAN Y GG+
Sbjct: 520 FYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGI 579
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+KL++E ++AF E+ L IFDSA P++G WW+ AED FQCLA CI+LS+AL+S SP +
Sbjct: 580 EKLTHESKLAFVEDRLPAIFDSAANPVDGNCWWINAEDSFQCLAACIDLSDALKSSSPHA 639
Query: 672 TISHIPVH 679
+SH+P+H
Sbjct: 640 AVSHLPIH 647
>gi|125556302|gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
Length = 950
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/573 (54%), Positives = 416/573 (72%), Gaps = 41/573 (7%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA
Sbjct: 89 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 148
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGE
Sbjct: 149 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 208
Query: 253 AIENEAR-------------------------IQSFFKSTKKKNATDNNLEGDSEPLTND 287
A+E E R +Q+FF+ T+KK+A +N+L
Sbjct: 209 AVERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSAGENDL---------- 258
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
L KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL+++A
Sbjct: 259 --ALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSA 316
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
++Q P DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T RH+ I
Sbjct: 317 FVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEI 376
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
PY+PMLV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+ALDTLGS
Sbjct: 377 PYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGS 436
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
TKWRVN+R+ ++ +W+ GG +AGLVD+E++PLPE+P T+D EI+KWKW +K AKK N
Sbjct: 437 TKWRVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKAN 496
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
E H++RCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH +L+HLGSDLCRGVLE+
Sbjct: 497 RELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYA 556
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
EG PLGK+GL WLKIHLAN Y GG++KLS+E +VAF EN L DIFDSA P++G WW+
Sbjct: 557 EGRPLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMN 616
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDPFQCLA C++LS+AL+S SP+ +SH+P+H
Sbjct: 617 AEDPFQCLAACMDLSDALKSSSPQCAVSHLPIH 649
>gi|21425669|emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 715
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/423 (74%), Positives = 367/423 (86%), Gaps = 10/423 (2%)
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
ARI F + TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR I
Sbjct: 1 ARIHRFLEKTKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKI 53
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
VK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E
Sbjct: 54 VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVE 111
Query: 378 ALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRT
Sbjct: 112 TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRT 171
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
HGA+QQRE +K P+ QLEPVFQALDTLG+TKWRVN+++LG++DR+WASGG LA LVD+E
Sbjct: 172 HGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDRE 231
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
DVPLPE P+T+DE EI+KWKWKVK KK+N E+HSQRCDIELKL+VARKMKDE+GFYYPH
Sbjct: 232 DVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPH 291
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
NLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLG +GL WLKIHLAN+Y GGVDKLSY
Sbjct: 292 NLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSY 351
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
EGRVAF+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EALRSPSPE+ IS++
Sbjct: 352 EGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYM 411
Query: 677 PVH 679
P+H
Sbjct: 412 PIH 414
>gi|222636003|gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
Length = 946
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/568 (55%), Positives = 413/568 (72%), Gaps = 41/568 (7%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA+DQ
Sbjct: 90 LRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEV 149
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENE 257
+ K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGEA+E E
Sbjct: 150 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVERE 209
Query: 258 AR-------------------------IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
R +Q+FF+ T+KK+A +N+L L
Sbjct: 210 NRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSAGENDL------------ALE 257
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL+++A++Q P
Sbjct: 258 KEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSP 317
Query: 353 VDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T RH+ IPY+PM
Sbjct: 318 ADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPM 377
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
LV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+ALDTLGSTKWRV
Sbjct: 378 LVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRV 437
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
N+R+ ++ +W+ GG +AGLVD+E++PLPE+P T+D EI+KWKW +K AKK N E H+
Sbjct: 438 NRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHA 497
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
+RCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH +L+HLGSDLCRGVLE+ EG PL
Sbjct: 498 ERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPL 557
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
GK+GL WLKIHLAN Y GG++KLS+E +VAF EN L DIFDSA P++G WW+ AEDPF
Sbjct: 558 GKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPF 617
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA C++LS+AL+S SP+ +SH+P+H
Sbjct: 618 QCLAACMDLSDALKSSSPQCAVSHLPIH 645
>gi|356514404|ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 973
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/548 (56%), Positives = 413/548 (75%), Gaps = 14/548 (2%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ +EY++L +M E+ LAPNLP+VKSL LGWFEP R A+
Sbjct: 134 KYNLLRRRQIEAETEAWEKMVEEYRELEREMREKMLAPNLPHVKSLLLGWFEPFRAAVEA 193
Query: 197 DQAT--AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA-GEVRVVQAACQIGEA 253
+Q A+ K + + AP+ ++LPAD +AVI MHK++ ++M N G V++V AA IG A
Sbjct: 194 EQTAHRARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMENEEGCVQLVHAAVHIGMA 253
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E RI F + K ++ EGD+E + L ++EK + + SL+KK +L++
Sbjct: 254 LEQEVRIHKFVEGNK--SSQSKKTEGDAE------DSLDSDKEKQRNYLNSLLKKNRLRE 305
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ I++ + PW +D K+G RL++LL++TAY+ PV+Q D+PPDIRPAF H K+
Sbjct: 306 VQMILRKE-ECSPWSRDTQAKLGSRLVELLIDTAYVHSPVNQSADTPPDIRPAFRHGFKA 364
Query: 374 FTKEALK--GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ ++YG+I+CDPLV GLEK +HM+IPYMPML+PP W+GY++GGH FLPS
Sbjct: 365 VPWHPGQKFSKKYGIIQCDPLVLVGLEKCAKHMLIPYMPMLIPPKKWKGYDKGGHLFLPS 424
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
Y+MRTHG+++Q++ +K +Q++ VF+ALD LG+TKWRVN+R+LGV++ +WA GG +AG
Sbjct: 425 YIMRTHGSKKQQDVMKNVDGAQMQKVFEALDILGNTKWRVNRRVLGVVESIWAGGGNIAG 484
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
LVD +DVP P+KP +D I++WK V+ AKK N E+HS RCD ELKLSVARKMKDEEG
Sbjct: 485 LVDCKDVPKPDKPLVEDLKLIQEWKCNVRKAKKINLERHSLRCDTELKLSVARKMKDEEG 544
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FYYPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF EG PLGK+GL WLKIHLANLYAGG+
Sbjct: 545 FYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGRPLGKSGLRWLKIHLANLYAGGI 604
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+K SY+GR+ F E+H+ DIFDSAD P+ G RWWL AEDPFQCLA CINLSEALRS SP S
Sbjct: 605 EKQSYDGRLGFIEDHIHDIFDSADHPINGNRWWLTAEDPFQCLAACINLSEALRSSSPNS 664
Query: 672 TISHIPVH 679
ISH+P+H
Sbjct: 665 FISHLPIH 672
>gi|356510622|ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 1043
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/564 (55%), Positives = 418/564 (74%), Gaps = 14/564 (2%)
Query: 121 MLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVK 180
+L ++ + + G KY +L+RRQI+ ETEAWE+ +EY++L +M E+ LAPNLP+VK
Sbjct: 188 LLMQEEEMRQKGKEREKYNLLRRRQIEAETEAWERMVEEYRELEREMREKMLAPNLPHVK 247
Query: 181 SLFLGWFEPLRDAIAKDQAT--AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM-TN 237
+L LGWFEP R A+ +Q A+ K + + AP+ ++LPAD +AVI MHK++ ++M +
Sbjct: 248 ALLLGWFEPFRAAVEAEQTAHHARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMESE 307
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK 297
G V++V AA IG A+E E RI F + K + EGD+E + L ++EK
Sbjct: 308 EGCVQLVHAAIHIGLALEQEVRIHKFIEGNKSNRSKKT--EGDAE------DSLDSDKEK 359
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
+ + SL+KK +L++V+ I++ + PW QD K+G RLI+LL++TAY+ PV+Q
Sbjct: 360 QRNYLNSLLKKNRLREVQMILRKE-ECSPWSQDTQAKLGSRLIELLIDTAYVHSPVNQSA 418
Query: 358 DSPPDIRPAFVHTLKSFTKEALK--GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPP 415
D+PPDIRPAF H K+ + ++YGVI+CDPLV GLEK +HM+IPYMPML+PP
Sbjct: 419 DTPPDIRPAFRHGFKAVPWHPGQKFSKKYGVIQCDPLVLVGLEKCAKHMLIPYMPMLIPP 478
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
W+GY++GGH FLPSY+MRTHG+R+Q++ +K +Q++ VF+ LD LG+TKWRVN+R+
Sbjct: 479 KKWKGYDKGGHLFLPSYIMRTHGSRKQQDVMKNVNGAQMQKVFETLDILGNTKWRVNRRM 538
Query: 476 LGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCD 535
LGV++ +WA GG +AGLVD +DVP P+KP +D I++WK V+ AKK N E+HS RCD
Sbjct: 539 LGVVESIWAGGGNIAGLVDCKDVPKPDKPPVEDLKLIQEWKCSVRKAKKINLERHSLRCD 598
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF EG PLGK+G
Sbjct: 599 TELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGRPLGKSG 658
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIHLANLYAGG++K SY+GR+ F E+H+ DIFDSAD P+ G RWWL AEDPFQCLA
Sbjct: 659 LRWLKIHLANLYAGGIEKHSYDGRLGFIEDHIHDIFDSADHPINGNRWWLTAEDPFQCLA 718
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
CINLSEALRS SP S ISH+P+H
Sbjct: 719 ACINLSEALRSSSPNSFISHLPIH 742
>gi|255574998|ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
Length = 1000
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/556 (56%), Positives = 403/556 (72%), Gaps = 33/556 (5%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ +EY+ L+ +MCE+KLAPNLPYVK LFLGWFEPL++ I
Sbjct: 149 KYNLLRRRQIREETEAWERMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKS 208
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K +AP+ LPAD MAVI MHK+VGLLM G V +VQAA QIG AI
Sbjct: 209 EQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVGLLMVGHEDGCVPLVQAAVQIGMAI 268
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RI +F + TK + ++ E L KE+E L+KRV SLI+++KL +V
Sbjct: 269 EQEVRIHNFLEKTKNYQR--------KKTISGAQESLGKEKEILRKRVNSLIRRKKLIEV 320
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ +VK + KPWG+D K+G RLI+LL ETA++QPPV+Q D PPD+RPAF H +
Sbjct: 321 QKLVKNE-EMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADVPPDVRPAFRHRFRIV 379
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ ++YGVIEC+PLV KGL+ + +HM+IPY PMLVPP W+GYN+GGHFFLPSY
Sbjct: 380 KNNPGQKIVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKKWKGYNKGGHFFLPSY 439
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL 492
+MRTHG+R+Q++ +K PR+ ++ VF+ALDTLG+TKWRVN+R+L V++ +WA GG +AGL
Sbjct: 440 IMRTHGSRKQQDALKNVPRNHMQKVFEALDTLGNTKWRVNRRVLDVVESIWARGGNIAGL 499
Query: 493 VDQEDVPLPEKP---------NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
VD++D + TD +E++ W + AKK N E+H VA
Sbjct: 500 VDRKDAGCHQSALLPVLMLFMKTDRTSEVR---WSARKAKKTNRERHLN--------DVA 548
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
RK+KDEEGFYYPHNLDFRGRAYPMHP+L HL SDLCRG+LEF EG PLGK+GL WLKIHL
Sbjct: 549 RKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGILEFAEGRPLGKSGLRWLKIHL 608
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
ANLY+GGV+KLS++GR+AF E+HL DIFDSA+ P+ G RWWL AEDPFQCLA CINLSEA
Sbjct: 609 ANLYSGGVEKLSHDGRLAFVEDHLADIFDSAENPVNGNRWWLTAEDPFQCLAACINLSEA 668
Query: 664 LRSPSPESTISHIPVH 679
L+S SP + ISH+P+H
Sbjct: 669 LKSSSPHTVISHLPIH 684
>gi|21425673|emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 355/422 (84%), Gaps = 8/422 (1%)
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
RI +F + TKK+ A + + D E +T +EQEKL+K+VT+L+KKQKL+ V IV
Sbjct: 2 RIHNFLEKTKKQKAEKDKQKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIV 54
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
+ DSKPWGQDA KVG RLI+LL++TAYIQPP +QL PPDIRPAF+H++++ KE
Sbjct: 55 RRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET 114
Query: 379 LKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
RRYG+I+CD LV KGLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTH
Sbjct: 115 KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 174
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
GARQQRE +K R+QL+PVF+ALDTLGSTKWR+NKR+L VIDR+WA GG LA LVD++D
Sbjct: 175 GARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDD 234
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
PLPE+P+T+DE KW+WKVK+ KK+N E+HSQRCDIELKL+VARKMKDEEGF+YPHN
Sbjct: 235 APLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHN 294
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
+DFRGRAYPMHP+LNHLGSD+CRGVL F EG PLG++GL WLKIHLANL+AGGV+KLS E
Sbjct: 295 VDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLE 354
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
GR+AFTENH+DDIFDSAD+PLEGRRWWL AEDPFQCLA CINLSEA+RS SPE++ISHIP
Sbjct: 355 GRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIP 414
Query: 678 VH 679
VH
Sbjct: 415 VH 416
>gi|297606283|ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
gi|51534999|dbj|BAD38123.1| putative T7 bacteriophage-type single subunit RNA polymerase [Oryza
sativa Japonica Group]
gi|255677283|dbj|BAF20145.2| Os06g0652000 [Oryza sativa Japonica Group]
Length = 806
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/517 (57%), Positives = 392/517 (75%), Gaps = 16/517 (3%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
M +++LAP LPYVKSLFLGWFEPLRDAIA+DQ + K YA Y LPAD +AVI
Sbjct: 1 MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIV 60
Query: 227 MHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEP 283
MHK++GLLM++ VRVVQAA IGEA+E E ++Q+FF+ T+KK+A +N+L
Sbjct: 61 MHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKTRKKSAGENDL------ 114
Query: 284 LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLL 343
L KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL
Sbjct: 115 ------ALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELL 168
Query: 344 METAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGR 402
+++A++Q P DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T R
Sbjct: 169 LDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTAR 228
Query: 403 HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
H+ IPY+PMLV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+ALD
Sbjct: 229 HVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALD 288
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
TLGSTKWRVN+R+ ++ +W+ GG +AGLVD+E++PLPE+P T+D EI+KWKW +K A
Sbjct: 289 TLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKA 348
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
KK N E H++RCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH +L+HLGSDLCRGV
Sbjct: 349 KKANRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGV 408
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
LE+ EG PLGK+GL WLKIHLAN Y GG++KLS+E +VAF EN L DIFDSA P++G
Sbjct: 409 LEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNC 468
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW+ AEDPFQCLA C++LS+AL+S SP+ +SH+P+H
Sbjct: 469 WWMNAEDPFQCLAACMDLSDALKSSSPQCAVSHLPIH 505
>gi|357516849|ref|XP_003628713.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522735|gb|AET03189.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 727
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 294/426 (69%), Positives = 360/426 (84%), Gaps = 10/426 (2%)
Query: 264 FKSTKKKNATDNNLEGDSEP--------LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
+ TK K AT + + DS P + EKL KE+++L+ +V SLIKKQK QQ
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
GIVKG +KPWGQ+A VKVG RLIQLL+ETAY++PP ++ GD PDI PAF HTLK+ +
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 376 KEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
++ G RRYGVIECDP+++KGLEKT R+M+IPYMPMLVPP NW GY++G + FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD 494
R HGA+QQR+ +K P++QL+ +F+AL+TLG+TKWRVNK +LGVID++WA+GG +A LVD
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVD 240
Query: 495 QEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
++D+PLPE+ +T+DE+EI+KWKWKVK KK+N+E+HSQRCDIELKL+VARK+K+E+GFYY
Sbjct: 241 RDDLPLPEELDTEDESEIRKWKWKVKNVKKENNERHSQRCDIELKLAVARKLKEEDGFYY 300
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA-GGVDK 613
PHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK GL WLKIHLANLYA GGVDK
Sbjct: 301 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKKGLQWLKIHLANLYATGGVDK 360
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
LSY+GRVAFTE+HLDDIFDSADRPLEG+RWWL AEDPFQCLA CINLSEALRSP+PE+T+
Sbjct: 361 LSYDGRVAFTEDHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACINLSEALRSPNPEATL 420
Query: 674 SHIPVH 679
SH+PVH
Sbjct: 421 SHMPVH 426
>gi|18642494|dbj|BAB84520.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 297/627 (47%), Positives = 416/627 (66%), Gaps = 35/627 (5%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA- 238
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 239 -GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE-----GDSEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK + N ++E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V +AL+ LG T WRVN
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVN 554
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
KR+L V++++W +GG +A LV+ +DVP+PE+P+T D+ KWK V AK+ NSE+HS
Sbjct: 555 KRVLEVVEKLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSL 614
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD ELKL VA+K+ DEE FYYPHNLDFRGRAYPMHP+LNHLG+DLCRG+L F +G PLG
Sbjct: 615 RCDTELKLGVAKKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLG 674
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+GL W+KI LANLY G V K+S++ R AF E+ +++I DSA+RPL+G R WL AEDPFQ
Sbjct: 675 PSGLRWIKIQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQ 734
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
LA CI+L +AL S +PE+ +SH+PVH
Sbjct: 735 FLAACIDLRDALASGNPETFVSHLPVH 761
>gi|168052876|ref|XP_001778865.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669734|gb|EDQ56315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1065
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 297/627 (47%), Positives = 415/627 (66%), Gaps = 35/627 (5%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA- 238
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 239 -GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE-----GDSEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK + N ++E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V +AL+ LG T WRVN
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVN 554
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
KR+L V++++W +GG +A LV+ +DVP+PE+P+T D+ KWK V AK+ NSE+HS
Sbjct: 555 KRVLEVVEKLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSL 614
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD ELKL VA K+ DEE FYYPHNLDFRGRAYPMHP+LNHLG+DLCRG+L F +G PLG
Sbjct: 615 RCDTELKLGVANKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLG 674
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+GL W+KI LANLY G V K+S++ R AF E+ +++I DSA+RPL+G R WL AEDPFQ
Sbjct: 675 PSGLRWIKIQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQ 734
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
LA CI+L +AL S +PE+ +SH+PVH
Sbjct: 735 FLAACIDLRDALASGNPETFVSHLPVH 761
>gi|18077583|emb|CAC95164.1| RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 297/627 (47%), Positives = 415/627 (66%), Gaps = 35/627 (5%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA- 238
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 239 -GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE-----GDSEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK + N ++E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V +AL+ LG T WRVN
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVN 554
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
KR+L V++++W +GG +A LV+ +DVP+PE+P+T D+ KWK V AK+ NSE+HS
Sbjct: 555 KRVLEVVEKLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSL 614
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD ELKL VA K+ DEE FYYPHNLDFRGRAYPMHP+LNHLG+DLCRG+L F +G PLG
Sbjct: 615 RCDTELKLGVADKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLG 674
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+GL W+KI LANLY G V K+S++ R AF E+ +++I DSA+RPL+G R WL AEDPFQ
Sbjct: 675 PSGLRWIKIQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQ 734
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
LA CI+L +AL S +PE+ +SH+PVH
Sbjct: 735 FLAACIDLRDALASGNPETFVSHLPVH 761
>gi|168053868|ref|XP_001779356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669272|gb|EDQ55863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1088
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 301/620 (48%), Positives = 415/620 (66%), Gaps = 30/620 (4%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
+Q +++ Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKSTKKKN-------ATDNNLEGDSEPLTNDPEKLIKEQEKLK---KR 301
EA+E E I +S +K + D + D+ + ++ KLK ++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
G+ GG+ L S +MRTHGA++ R+TI T R + + QALD LGST+W++N +L V+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
++MW GG LA LVD EDVPLP+KP +DD EI+ W+ +AK+ NSE+HS RCD ELK
Sbjct: 585 EQMWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L+ ARK++DEEGF+YPHNLDFRGRAYP+HP+LNHLGSD+CRG+L+F EG LG GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KIHLANLY G V K+S++ RVA+ + ++ +FDSADRPL+G RWWL AEDPFQ LATC++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 660 LSEALRSPSPESTISHIPVH 679
+ A++S +PE+ +SH+PVH
Sbjct: 765 IRNAIKSGNPETYVSHLPVH 784
>gi|18642493|dbj|BAB84519.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 301/620 (48%), Positives = 415/620 (66%), Gaps = 30/620 (4%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
+Q +++ Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKSTKKKN-------ATDNNLEGDSEPLTNDPEKLIKEQEKLK---KR 301
EA+E E I +S +K + D + D+ + ++ KLK ++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
G+ GG+ L S +MRTHGA++ R+TI T R + + QALD LGST+W++N +L V+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
++MW GG LA LVD EDVPLP+KP +DD EI+ W+ +AK+ NSE+HS RCD ELK
Sbjct: 585 EQMWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L+ ARK++DEEGF+YPHNLDFRGRAYP+HP+LNHLGSD+CRG+L+F EG LG GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KIHLANLY G V K+S++ RVA+ + ++ +FDSADRPL+G RWWL AEDPFQ LATC++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 660 LSEALRSPSPESTISHIPVH 679
+ A++S +PE+ +SH+PVH
Sbjct: 765 IRNAIKSGNPETYVSHLPVH 784
>gi|18077581|emb|CAC95163.1| RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 300/620 (48%), Positives = 415/620 (66%), Gaps = 30/620 (4%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
+Q +++ Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKSTKKKN-------ATDNNLEGDSEPLTNDPEKLIKEQEKLK---KR 301
EA+E E I +S +K + D + D+ + ++ KLK ++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
G+ GG+ L S +MRTHGA++ R+TI T R + + QALD LGST+W++N +L V+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
+++W GG LA LVD EDVPLP+KP +DD EI+ W+ +AK+ NSE+HS RCD ELK
Sbjct: 585 EQVWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L+ ARK++DEEGF+YPHNLDFRGRAYP+HP+LNHLGSD+CRG+L+F EG LG GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KIHLANLY G V K+S++ RVA+ + ++ +FDSADRPL+G RWWL AEDPFQ LATC++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 660 LSEALRSPSPESTISHIPVH 679
+ A++S +PE+ +SH+PVH
Sbjct: 765 IRNAIKSGNPETYVSHLPVH 784
>gi|168052257|ref|XP_001778567.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670021|gb|EDQ56597.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 861
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/564 (47%), Positives = 369/564 (65%), Gaps = 29/564 (5%)
Query: 134 GTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDA 193
G K L++RQI ETEAW A +Y++ +A+MC +KLAPNLP + L LGW+EPLRDA
Sbjct: 6 GHNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDA 65
Query: 194 IAKDQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAAC 248
IA++Q + + + +Y P+ LP +AVITMH L+ L+M+N G V+V+QAA
Sbjct: 66 IAEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQAAL 125
Query: 249 QIGEAIENEARIQSFFKSTKKKNATD----------NNLEGDSEPLTNDPEKLIKEQEKL 298
IGEA+E E I+ KKN T + +E LT PE L
Sbjct: 126 HIGEAVEQEVLIRKLRIGKAKKNETKRKGITKDDGISTIESGKVELTTSPE--------L 177
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD 358
+ T + K +KL+ R +++ S PWG KVG RL++L META I+ P D
Sbjct: 178 PTQATGMQKLRKLRLWRSMLQKASGSDPWGPTIYAKVGSRLLELFMETAVIRVPSDD-PH 236
Query: 359 SPPDIRPAFVHTLKSFTKEALKGRR---YGVIECDPLVRKGLEKTGRHMIIPYMPMLVPP 415
P F HT K F GR +GV+EC+PLV + ++K+ +++I+PYMPM+ P
Sbjct: 237 VDASFEPVFQHTNKKFV--CTNGRSSTGFGVVECNPLVLEQIDKSVKYVIMPYMPMVSKP 294
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
+W+G++ GG+ FL S +MRTHG+++Q + K TPR ++ +FQAL+ LG T WRVNK +
Sbjct: 295 KHWKGFHDGGYLFLKSSIMRTHGSKEQYDIFKNTPRENMKKIFQALNVLGETGWRVNKPV 354
Query: 476 LGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCD 535
L V++++W GG LA LVD EDV +P KP T++ E+K W+ +V K+ N E++S RCD
Sbjct: 355 LAVLEQIWKEGGRLANLVDAEDVLVPAKPETNNLDELKSWRREVGIVKRTNYERYSLRCD 414
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
+ELKL+VARK+ +E+ FY PHNLDFRGRAYPMHP LNHLGSD+CRGVLEF +G PLG+ G
Sbjct: 415 VELKLAVARKLVNEDAFYLPHNLDFRGRAYPMHPNLNHLGSDMCRGVLEFAKGRPLGETG 474
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIHLANLY G + KLS++ RVA + H+DD+FDSA+ P+ G RWWL AEDPFQ LA
Sbjct: 475 LRWLKIHLANLYGGSISKLSFDARVAHVDTHMDDVFDSAENPMNGNRWWLKAEDPFQFLA 534
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
CI++ A++S +P++ S +PVH
Sbjct: 535 ACIDIRNAVKSGNPKTYNSFLPVH 558
>gi|188529544|emb|CAP70041.1| RNA polymerase [Selaginella moellendorffii]
Length = 1002
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/543 (48%), Positives = 374/543 (68%), Gaps = 20/543 (3%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD 203
RQ K+E +AW+ A +EY+ +L +MC +KLAPNLP+ KSL + WFEP+RD IAK+ +
Sbjct: 175 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 234
Query: 204 KW---KHMTYAPYFNN--LPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEAIEN 256
+ Y P L AD++AVITMH+LV L+M ++G +R+ A IG+A+E
Sbjct: 235 EEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDAVEQ 294
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
E +I+ K K K L ++EP T + EK ++KL++ + ++ + V+
Sbjct: 295 EIKIRRALKKRKPKE-----LAEEAEPPTPEEEKKEYLKDKLRRAII-----ERPRNVKE 344
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
I+K S+PW K+GCRLI ++M ++I PV + +IRPAF H LK
Sbjct: 345 ILKSLDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRHVLKVPKG 404
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
L R YG I CDP +R ++ + + +++PYMPML+PP W+GY+ G + L S +MRT
Sbjct: 405 GLL--RSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRT 462
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
HG++QQRE ++ TPR+QL+ VF+ALDTLG+ W++NK + VI+++W++GG + GLVD++
Sbjct: 463 HGSKQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRK 522
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
DVPLP KPNT+DE E++ W+ K+ NSE++SQRCD+ELKL+VAR +KDEE FYYPH
Sbjct: 523 DVPLPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPH 582
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
NLDFRGRAYPMH +LNHLGSD+CRG+L F +G PLG GL WLKIH+AN++A G DKL +
Sbjct: 583 NLDFRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPF 642
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+GRVAF E++L+ + SA++PL+ RWWL AEDPFQCLA CI+L A+ SP+PE ISH+
Sbjct: 643 DGRVAFAESNLEHVVASANQPLKN-RWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHL 701
Query: 677 PVH 679
PVH
Sbjct: 702 PVH 704
>gi|302766019|ref|XP_002966430.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
gi|302792739|ref|XP_002978135.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300154156|gb|EFJ20792.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300165850|gb|EFJ32457.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
Length = 831
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/546 (48%), Positives = 375/546 (68%), Gaps = 20/546 (3%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L RQ K+E +AW+ A +EY+ +L +MC +KLAPNLP+ KSL + WFEP+RD IAK+
Sbjct: 1 LFNRQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKA 60
Query: 201 AQDKW---KHMTYAPYFNN--LPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEA 253
+ + Y P L AD++AVITMH+LV L+M ++G +R+ A IG+A
Sbjct: 61 IEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDA 120
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E +I+ K K K L ++EP T + EK ++KL++ + ++ +
Sbjct: 121 VEQEIKIRRALKKRKPKE-----LAEEAEPPTPEEEKKEYLKDKLRRAII-----ERPRN 170
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ I+K S+PW K+GCRLI ++M ++I PV + +IRPAF H LK
Sbjct: 171 VKEILKSLDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRHVLKV 230
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV 433
L R YG I CDP +R ++ + + +++PYMPML+PP W+GY+ G + L S +
Sbjct: 231 PKGGLL--RSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVI 288
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
MRTHG++QQRE ++ TPR+QL+ VF+ALDTLG+ W++NK + VI+++W++GG + GLV
Sbjct: 289 MRTHGSKQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLV 348
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
D++DVPLP KPNT+DE E++ W+ K+ NSE++SQRCD+ELKL+VAR +KDEE FY
Sbjct: 349 DRKDVPLPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFY 408
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
YPHNLDFRGRAYPMH +LNHLGSD+CRG+L F +G PLG GL WLKIH+AN++A G DK
Sbjct: 409 YPHNLDFRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADK 468
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
L ++GRVAF E++L+ + SA++PL+ RWWL AEDPFQCLA CI+L A+ SP+PE I
Sbjct: 469 LPFDGRVAFAESNLEHVVASANQPLKN-RWWLKAEDPFQCLAACIDLRNAMHSPNPEYYI 527
Query: 674 SHIPVH 679
SH+PVH
Sbjct: 528 SHLPVH 533
>gi|125562883|gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
Length = 845
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 274/346 (79%), Gaps = 41/346 (11%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
+VG RLI+L++ETAYIQPP Q D PPDIRPAF H +++ +E
Sbjct: 240 EVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE---------------- 283
Query: 394 RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ 453
+ Y++G H FLPSYVMRTHGARQQR+ ++ PR Q
Sbjct: 284 -------------------------QQYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQ 318
Query: 454 LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIK 513
++ VF+AL+TLGSTKWRVNKR+L ++DR+W+SGG LA LVD+ DV LPEKP+T+DE ++K
Sbjct: 319 MQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLK 378
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
KW+W ++ AKK+NSE+HSQRCD+ELKL+VARKMKDE+GFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 379 KWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNH 438
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
LGSDLCRGVLEF EG PLGK+GL WLKIHLANLYAGGVDKLSY+GR+AFTENHL+DIFDS
Sbjct: 439 LGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDS 498
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
ADRPLEG+RWWLGAEDPFQCLA CINL+EALRSPSPE+ ISHIPVH
Sbjct: 499 ADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVH 544
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 109/128 (85%), Gaps = 2/128 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 113 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 172
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 173 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 232
Query: 250 IGEAIENE 257
IGEAIE+E
Sbjct: 233 IGEAIEHE 240
>gi|255585835|ref|XP_002533595.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
gi|223526524|gb|EEF28786.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 589
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 208/259 (80%), Positives = 237/259 (91%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
Y++G H FLPSYVMRTHGARQQRE +K+TPR QL+PVF+ALDTLGSTKWR+NKRILGV+D
Sbjct: 30 YDKGAHLFLPSYVMRTHGARQQREAVKITPREQLQPVFEALDTLGSTKWRINKRILGVVD 89
Query: 481 RMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
R+W SGG L LVD+ DVPLPEKP T+DE ++KWKWK++ AKK+N E+HSQRCD ELKL
Sbjct: 90 RIWNSGGRLGDLVDRNDVPLPEKPETEDEALVRKWKWKLRAAKKENRERHSQRCDTELKL 149
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLK
Sbjct: 150 AVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 209
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
IHLANL+AGGVDKLSY+GR+AFTENHLDDIFDSADRPLEG+RWWL AEDPFQCLA CI+L
Sbjct: 210 IHLANLFAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGKRWWLNAEDPFQCLAVCIDL 269
Query: 661 SEALRSPSPESTISHIPVH 679
+EALRS SPE+ ISH+P+H
Sbjct: 270 TEALRSSSPETFISHVPIH 288
>gi|224127286|ref|XP_002329240.1| predicted protein [Populus trichocarpa]
gi|222870694|gb|EEF07825.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 201/259 (77%), Positives = 233/259 (89%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
Y++G H FLPSYVMR HGA+QQRE +K PR QL+ VF+ALDTLG+T+WRVNKR+L V+D
Sbjct: 1 YDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQAVFEALDTLGNTRWRVNKRVLSVVD 60
Query: 481 RMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
R+W++GGCLA LVD DVPLPEKP T+DE +KKWKWK++ KK+N E+H+QRCDIELKL
Sbjct: 61 RIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKL 120
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLK
Sbjct: 121 AVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
IH+ANL+AGGVDKLSYEGR+AFTENHLDDIFDSAD+PL+G+RWWL AEDPFQ LA CINL
Sbjct: 181 IHIANLFAGGVDKLSYEGRIAFTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINL 240
Query: 661 SEALRSPSPESTISHIPVH 679
+EALRS SPE+ ISHIPVH
Sbjct: 241 TEALRSSSPETYISHIPVH 259
>gi|224116234|ref|XP_002331994.1| predicted protein [Populus trichocarpa]
gi|222832118|gb|EEE70595.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/423 (52%), Positives = 273/423 (64%), Gaps = 51/423 (12%)
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQF 108
T S+LG +N + G SR Y S AEA++S E +SG++EVQEL +
Sbjct: 4 TQLTDFSHSSLGSTNGNRC----GGFCSRGYVSVAEALSSTDVEDNVSGADEVQELQPEM 59
Query: 109 NEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMC 168
++ ++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DMC
Sbjct: 60 RKE-------EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMC 112
Query: 169 EQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
E KLAPNLPY+KSLFLGWFEP RDAIAK+Q + YA YF+ LPAD M+VI MH
Sbjct: 113 EHKLAPNLPYMKSLFLGWFEPFRDAIAKEQELIRTGKSRQGYALYFDLLPADKMSVIAMH 172
Query: 229 KLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+L ++MT G RVV AAC IG+AIE E PL +
Sbjct: 173 QLAAMVMTGGQHGCARVVTAACMIGDAIEQE----------------------KVNPLLS 210
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
+K+VT LIKKQKL VR IVKG DSKPW DA KVG RLI+LL++T
Sbjct: 211 ------------RKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQT 258
Query: 347 AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMI 405
AYIQPP DQL D+ + RPAFVHT ++ + E KG ++YGVI+CDPLV KGLEKT RHM+
Sbjct: 259 AYIQPPCDQLADTSSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVLKGLEKTARHMV 318
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
IPYMPMLVPPL WRGY++G H FLPSYVMR HGA+QQRE +K PR QL+PVF+ALDTLG
Sbjct: 319 IPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQPVFEALDTLG 378
Query: 466 STK 468
+TK
Sbjct: 379 NTK 381
>gi|149940228|emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 179/260 (68%), Positives = 223/260 (85%), Gaps = 2/260 (0%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
Y+ GGHFFLPSY+MRTHG+RQQ++ ++ P SQ++ +++ALDTLGSTKWRVNKR+L V++
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60
Query: 481 RMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
+WA+GG +AGLV+++DV +P+ N++D +EIK+W+W V+ AKK N E HSQRCDIELKL
Sbjct: 61 SIWAAGGDIAGLVNRQDVSIPDL-NSEDSSEIKEWRWSVRKAKKMNQELHSQRCDIELKL 119
Query: 541 SV-ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
SV AR+MKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WL
Sbjct: 120 SVVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 179
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
+IHLANLY GV+KLSY+GR+AF E+H+ +I DSAD PL G RWWL AEDPFQCLA CIN
Sbjct: 180 RIHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTAEDPFQCLAACIN 239
Query: 660 LSEALRSPSPESTISHIPVH 679
L+E L+S SP + ISH+PVH
Sbjct: 240 LAETLKSSSPHTVISHLPVH 259
>gi|224127290|ref|XP_002329241.1| predicted protein [Populus trichocarpa]
gi|222870695|gb|EEF07826.1| predicted protein [Populus trichocarpa]
Length = 543
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 177/226 (78%), Positives = 204/226 (90%)
Query: 454 LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIK 513
E +FQALDTLG+T+WRVNKR+L V+DR+W++GGCLA LVD DVPLPEKP T+DE +K
Sbjct: 18 FELIFQALDTLGNTRWRVNKRVLSVVDRIWSNGGCLADLVDHSDVPLPEKPETEDEALLK 77
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
KWKWK++ KK+N E+H+QRCDIELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNH
Sbjct: 78 KWKWKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNH 137
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
LGSDLCRG+LEF EG PLGK+GL WLKIH+ANL+AGGVDKLSYEGR+AFTENHLDDIFD
Sbjct: 138 LGSDLCRGILEFAEGRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIAFTENHLDDIFDC 197
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
D+PL+G+RWWL AEDPFQ LA CINL+EALRS SPE+ ISHIPVH
Sbjct: 198 TDKPLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVH 243
>gi|357502599|ref|XP_003621588.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355496603|gb|AES77806.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 895
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/261 (72%), Positives = 226/261 (86%)
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
+ +++GG+ FLPSYVMRTHG +QQRE +K PR QLEPVF+ALDTLG+TKWRVN ++L V
Sbjct: 332 QNFDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKVLSV 391
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
+DR+WA GG LAGLVD+ DV +PE+ +DDE E KKWKWKVK+ KK+N E++S RCD EL
Sbjct: 392 VDRIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCDTEL 451
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KL+VARKMKDEE FYYPHNLDFRGRAYPMHP+LNHLGSD+CRG+LEF +G PLGK+GLHW
Sbjct: 452 KLAVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLHW 511
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LKIHLANLY GGVDKLS EGR+ F ENHLD+IFDSA++P+EGRRWWL AEDPFQ LA C+
Sbjct: 512 LKIHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLAACM 571
Query: 659 NLSEALRSPSPESTISHIPVH 679
L+EAL+ +PES ISHIPVH
Sbjct: 572 TLTEALKISTPESFISHIPVH 592
>gi|21425677|emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/259 (70%), Positives = 222/259 (85%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
Y++GG+ FLPSY+MRTHG+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60
Query: 481 RMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
+WA GG +AGLVD++DVP+PE N+DD E+KKWKWKV+ +KK N E HSQRCD ELKL
Sbjct: 61 SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
SVARK+KDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLK
Sbjct: 121 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
IHLA+LYAGGV+KL Y+ R+AF ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINL
Sbjct: 181 IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240
Query: 661 SEALRSPSPESTISHIPVH 679
SEAL+S SP + ISH+P+H
Sbjct: 241 SEALKSSSPHTVISHLPIH 259
>gi|224120774|ref|XP_002330948.1| predicted protein [Populus trichocarpa]
gi|222873142|gb|EEF10273.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 205/446 (45%), Positives = 259/446 (58%), Gaps = 89/446 (19%)
Query: 1 MWRNLARQSSTR------NFKFSPSKVSQTTNFL---KKITSLETQTL--LDSSCPLLGF 49
MWRN+A+Q++ + NF P +T +FL K+ E L+++ P L F
Sbjct: 1 MWRNVAKQATLKSQSKSLNFPSFP----RTYSFLGASKEPIFFEKLKFHSLNNTSPRLSF 56
Query: 50 RRTSFLSSQKSNLGQSNF--------TQSIYPFGVLTSRSYASAAEAIAS---ESELSGS 98
R +S+ + +G+ +F T + G R Y S AEA++S E +SG+
Sbjct: 57 RAIGEISTHEDFMGKPSFIFLRNSSSTNGNWCAG-FCPRGYVSVAEAVSSTDVEDNVSGA 115
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+E +E G+G+ K+ +L+RRQ+KIE EAWE A K
Sbjct: 116 DEEEEATCN-----------------------PGIGSRKHRVLRRRQVKIEAEAWELATK 152
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCE KLAPNLPY+KSLFLGWFEP DAIAK+Q + YAPYF+ LP
Sbjct: 153 EYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRTGKSRQGYAPYFDLLP 212
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
AD M+VI MH+L ++MT G RVV AAC IG+AIE E
Sbjct: 213 ADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDAIEQE------------------- 253
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
EQE L+K+VT LIKKQKL VR IVKG DSKPW DA KVG
Sbjct: 254 -----------------EQENLRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVG 296
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++ + E KG ++YGVI+CDPLV K
Sbjct: 297 SRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVLK 356
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGY 421
GLEKT RHM+IPYMPMLVPPL WRGY
Sbjct: 357 GLEKTARHMVIPYMPMLVPPLRWRGY 382
>gi|290976388|ref|XP_002670922.1| predicted protein [Naegleria gruberi]
gi|284084486|gb|EFC38178.1| predicted protein [Naegleria gruberi]
Length = 933
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 204/559 (36%), Positives = 302/559 (54%), Gaps = 72/559 (12%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ----- 198
+Q ++ET + + A Y+ L + + LP K + L W+EPL I + Q
Sbjct: 130 KQKELETRSMDIAKARYRKDLKSATSRNQSACLPPAKKIMLEWYEPLTKIIREKQDEVNF 189
Query: 199 --------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVV 244
T+QD + Y ++ A+ +A+IT+H+L+ + G V
Sbjct: 190 SCSKKKSSSTNTTTTTSQDNF---AIPLYLTSISAEKLAIITLHELLASCLKERGGSPVS 246
Query: 245 QAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS 304
+ QIG+AI+ E ++ K+ N KLI + + + +
Sbjct: 247 SISYQIGDAIQAEINVEKL----KRTNYF----------------KLIIKNQMIYHNINK 286
Query: 305 LIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR 364
I K KL + K + LV++G LIQL + TA++ L +P +
Sbjct: 287 -ISKLKLNEYVTFTK----------EELVQLGSYLIQLALSTAHVP-----LISNPKETV 330
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKTGRHMIIP-YMPMLVPPLNWRGY 421
PAF+H ++ T+ + + GV+E D L G E + ++ P ++PMLVPP W
Sbjct: 331 PAFIH--RNITRNS---KIIGVVEPDDNLLHLIGREHVAQEILYPNHLPMLVPPNPWTSS 385
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
GG+ L +MRT G+ Q T+K ++L + L+TL T+WR+N + + +
Sbjct: 386 TAGGYIALKVLIMRTRGSHLQAYTLK---SAELNDLLSGLNTLNETRWRINPTVYETVLK 442
Query: 482 MWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS 541
+W SGG L L + D LPE+P TDD KKWK V+ K N HS RCD+ LKL
Sbjct: 443 VWNSGGGLGELPSRFDDTLPEEPETDDPEIKKKWKRTVEKIKTHNRNLHSLRCDMLLKLK 502
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
VA KD FY+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L FE+G P+GK G+ WLKI
Sbjct: 503 VAEDFKDN-TFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKI 561
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
HLANLY G DKL ++ RV F + ++++I DSAD+PLEG RWWL +E+P+Q LA C+ L+
Sbjct: 562 HLANLY--GKDKLPFDERVQFVDEYINEIIDSADQPLEGNRWWLKSENPWQTLAACVELA 619
Query: 662 EALRSPSPESTISHIPVHM 680
E LRSP+PE +SH+P+ M
Sbjct: 620 ECLRSPNPEEFLSHLPIQM 638
>gi|255585837|ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 188/400 (47%), Positives = 244/400 (61%), Gaps = 32/400 (8%)
Query: 1 MWRNLARQSSTR--NFKFSPSKVSQTTNFLK-----KITSLETQTLLDSSCPLLGFRRTS 53
MWRN+A+Q+ +R + S +S T +FL T + L + L+GF R
Sbjct: 1 MWRNVAKQTISRAQSKSLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYACSSLVGFCRLG 60
Query: 54 FLSSQKSNLGQ-----------SNFTQSIYPFGVLTS----RSYASAAEAIASESELSGS 98
+ + +G+ SN + G L S R Y S AEA++S +++
Sbjct: 61 EIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVSSSTDVEED 120
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
V E + + ++ + + + ++K GMG+ KY MLK+RQ+KIETEAWE A K
Sbjct: 121 VSVVEEVQELLQE---MRREEAREKELIRRKERGMGSKKYQMLKKRQVKIETEAWEWAVK 177
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCE+KLAPNLPY+KSLFLGWFEP RDAI K+Q + +APYF+ LP
Sbjct: 178 EYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNRTAFAPYFDQLP 237
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKLV L+MT G RVV AAC IG AIE E RI F + TKK+N+ D+
Sbjct: 238 ADMMAVITMHKLVALVMTGGEHGCARVVAAACLIGAAIEQEVRIHKFLEKTKKRNSNDSK 297
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ E +KEQEKL+K+VT LIKKQKL VR IVKGH DS+ W QD KVG
Sbjct: 298 KNEEDE-----SNGAVKEQEKLRKKVTDLIKKQKLPAVRQIVKGHDDSQSWTQDTKAKVG 352
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
RLI+LL++TAYIQPP DQL D PPDIRPAF HT ++ T+
Sbjct: 353 SRLIELLIQTAYIQPPADQLADGPPDIRPAFAHTFRNVTQ 392
>gi|75706720|gb|ABA25911.1| putative mitochondrial T-odd phage-like single-subunit RNA
polymerase [Naegleria sp. TES-2005]
Length = 968
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 193/562 (34%), Positives = 295/562 (52%), Gaps = 72/562 (12%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ----- 198
+Q ++ET + + A + Y+ L + LP K + L W+EPL I + Q
Sbjct: 159 KQKELETRSMDIAKERYRKDLKSATNRNQGACLPPAKKILLEWYEPLTKLIREKQDEVNF 218
Query: 199 -----------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV 241
T H + + ++ A+ +A+IT+H+L+ +
Sbjct: 219 SAKKKSTISAADSASAANTTSGAVDHFSIPLHLTSISAEKLAIITLHELLASCLRERAGS 278
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
V + +G+AI+ E ++ K+ N KLI + + +
Sbjct: 279 AVSSLSYVVGDAIQAEINMEKL----KRTNHF----------------KLILKNQMVYHN 318
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
+ L K KL + + ++ L+++G LIQL ++TA + L D+P
Sbjct: 319 INKL-SKLKLNEYVS----------FSKEELIRLGSYLIQLTLDTAKVP-----LVDNPK 362
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRK--GLEKTGRHMIIP-YMPMLVPPLNW 418
+ PAF+H K+ ++ G+ G+IE D + + G E + ++ P ++PMLVPP W
Sbjct: 363 ESVPAFIH--KNVSR---AGKVIGMIEPDENLIQLVGREHLTQEILFPNHLPMLVPPNPW 417
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
GG+ L +MRT G+ Q +K ++L + L+TL +KW VN ++
Sbjct: 418 TSSVSGGYIALKVMIMRTRGSHLQSYILK---SAELTDLLSGLNTLNESKWIVNPKVYET 474
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
+ R+W GG L L + D LPE+P TDD KKWK + K+ N HS RCD+ L
Sbjct: 475 VLRVWNEGGGLGELPSRFDDALPEEPETDDPEVKKKWKRTCEKIKQHNRNLHSLRCDMLL 534
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KL VA KD FY+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L FE+G P+GK G+ W
Sbjct: 535 KLKVAEDFKDN-AFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFW 593
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LKIHLANLY G DKL ++ RV F + ++ ++FDSAD PL+G RWWL +E+P+Q LA C+
Sbjct: 594 LKIHLANLY--GKDKLPFDERVQFIDQNMAEVFDSADVPLDGNRWWLQSENPWQTLAACV 651
Query: 659 NLSEALRSPSPESTISHIPVHM 680
L+ LRS PE IS++P+ M
Sbjct: 652 ELTNCLRSEKPEEYISNLPIQM 673
>gi|81373966|gb|ABB71761.1| mitochondrial DNA-directed RNA polymerase [Physarum polycephalum]
Length = 997
Score = 318 bits (815), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 190/568 (33%), Positives = 300/568 (52%), Gaps = 68/568 (11%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
AKY + Q +E A +QA + Y+ L + + +L + + W+ P RD+I
Sbjct: 173 AKYQL----QADLELNAIDQATEYYRKALDGILRARQGASLGPTRRIIDSWYGPFRDSIN 228
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIE 255
+ + L +D + VIT+H+ +G+L+ N V +Q A +G A++
Sbjct: 229 AAVRKMSARASSHSLVANLKLLSSDKLPVITLHQTLGMLLANTEGVPFMQVAFAVGRAVQ 288
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E + K+ + L+K + + + ++ K L++
Sbjct: 289 AEVNFERMKAEDKQAFRS-----------------LLKSKSGITVTLVNIKAKYTLKK-- 329
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----------------QLGDS 359
W +V++G L++ LM +A I+ VD QL D
Sbjct: 330 ---------HDWDSKTIVQLGAFLLKHLMLSAKIEKNVDKVLSKANNLAVSSSERQLADD 380
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-----IPYMPMLVP 414
+ AFVH K F ++ RR G+++C + K ++ H+I +PM+V
Sbjct: 381 --EYVSAFVHYYK-FYRQGSTTRRQGLLKCHENIFKYVDDG--HVIKEVLDARLLPMVVK 435
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
P+ W GG+ ++PS +MR + Q ++ + L VF AL+ LG T WRVN+
Sbjct: 436 PVPWVSPTVGGYLYVPSVLMRAQEHQAQYASLW---NADLTTVFAALNALGETGWRVNEE 492
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVPLPEKPN---TDDETEIKKWKWKVKTAKKQNSEKHS 531
+ ++ ++W GG LA L + D+ P+ P+ T+DE++ + WK + ++ N++ +S
Sbjct: 493 VYHIVKKVWDDGGGLAALPTRTDITFPDPPDDLDTNDESK-RTWKKTERKIRQLNNDLNS 551
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
RCD KLSVA + + FY PHN+DFRGRAYP+ P+LN LGSD+CRG+L F+E PL
Sbjct: 552 LRCDTTYKLSVAETLLHMD-FYLPHNVDFRGRAYPIPPHLNQLGSDMCRGLLVFKEKKPL 610
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G GL WLKIHLANLY GVDK+ ++ RV F + ++D +FDSAD PL+G +WW+GA+DP+
Sbjct: 611 GPTGLRWLKIHLANLY--GVDKVPFDARVNFVDKNIDKVFDSADHPLDGEQWWVGADDPW 668
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCL TC L++ALRSP+PE +S +PVH
Sbjct: 669 QCLGTCFELAKALRSPNPEEFLSCMPVH 696
>gi|412990986|emb|CCO18358.1| predicted protein [Bathycoccus prasinos]
Length = 1109
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 203/638 (31%), Positives = 315/638 (49%), Gaps = 96/638 (15%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
++ + RQ ++E E+ K Y+++ M + NLP V+ L ++EPL + +
Sbjct: 164 EFVARRERQRRVENESVNDEIKRYREMSEQMAQVGAGANLPAVRQLLTSFYEPLMVGVER 223
Query: 197 DQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---------------- 237
+Q + + Y PY L AD +AVI++H ++ +LM
Sbjct: 224 EQNMISEGVPGFDRRVYGPYLQLLGADKIAVISLHTIISMLMRGVEKTRGDVFRDHSREH 283
Query: 238 --AGEVRVVQAACQIGEAIENE---ARIQSFFKS-TKKKNATDNNLEGDSEPLTND---- 287
AG V+ V+ A +G IE E +R+Q+ K + + A N+E E +
Sbjct: 284 GEAGSVKFVRLASSLGRVIEAEVNLSRLQTREKLLSARYRAGLINMEDIVETFNQERHAG 343
Query: 288 PEKLIKEQEKLKK--------RVTSLIKK-------------QKLQQVRGI---VKGHVD 323
++I E+E+ +K R +LIK+ +KL+ VR + K +D
Sbjct: 344 ENEMIAEREREEKIANIDREIREKNLIKESDIRSTMLQRDSTKKLKSVRAVSEQAKKALD 403
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR-PAFVH-------TLKSFT 375
+ WG +KVG +I ++++ I+ P + ++ I PAF H + +
Sbjct: 404 NADWGSVLHLKVGAAIIAIVLDVCKIKVPGPETAETGEKIEVPAFYHDYSLEPNAYQGWK 463
Query: 376 KEALKGRRYGVIECDP----LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
++A R G + V R I + PM+VPP W YN+GG+ S
Sbjct: 464 QKASPNNRSGTVHWHDSFFRFVHSATLARARSAITRHKPMIVPPRPWESYNKGGYLNSNS 523
Query: 432 YVMRTHGARQQRETIKMTPRSQ----LEPVFQALDTLGSTKWRVNKRILGVIDRMW---- 483
VMR + +R +M ++ + VF AL+ LGST W +N IL VI+++W
Sbjct: 524 VVMRGNYSRDGPSDGQMKLLAERVGEYDNVFGALNVLGSTAWVINTDILEVIEQVWREKK 583
Query: 484 ---ASGGCLAGLVDQEDVPLPEKPNTD-----------------DETEIKKWKWKVKTAK 523
GG +A + + ++ LP P+++ E+ ++ AK
Sbjct: 584 YAGGFGGGIANIPPRAELNLPNWPSSEFRLRRERNGPLYATALPSSREVGEFMRAFNRAK 643
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+ N E HSQRCD +KL VAR+MK+EE Y+PHN+DFRGRAY MH +LNH+GSD CRG L
Sbjct: 644 QTNRELHSQRCDFAIKLQVAREMKNEERIYFPHNVDFRGRAYTMHAHLNHIGSDFCRGTL 703
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL--EGR 641
+F + PLG+ GL WL I ANLY GG DKL RV F++ +L+ I SA+ PL EG
Sbjct: 704 KFADAKPLGENGLDWLFIQCANLYGGGADKLPLHQRVEFSKLNLEKIKKSAEDPLGPEG- 762
Query: 642 RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW A+DP+QCLATC+ + +A+ S P + ++PVH
Sbjct: 763 SWWQDADDPWQCLATCMEIIKAINSKDPAKYMCNLPVH 800
>gi|401883409|gb|EJT47618.1| Rpo41 [Trichosporon asahii var. asahii CBS 2479]
Length = 1321
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 279/488 (57%), Gaps = 33/488 (6%)
Query: 213 YFNNLPADMMAVIT---MHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y + LP +A+IT + +++G N G +++++ +G AIE E R +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDG-MKLLRGVMGVGRAIEAEYRADMIRSIAGE 491
Query: 270 KNATDNNLEGDSEPLTNDPEKLI---------KEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
K+ + +P T P +L +E+EK K + Q ++
Sbjct: 492 KSRLWQKV---IDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLR 548
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETA-YIQPPVDQL-GDSPPDIRPAFVHTLKSFTKEA 378
V + PW + +G L++ L++TA ++ D L G+ + +PAF H+ E
Sbjct: 549 AVWTPPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSF-----EY 603
Query: 379 LKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
++GR+ GVI+ +P+V K L R +I P ++PMLVPP +W+ +N+G + +P+ +MR
Sbjct: 604 VRGRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNSWKAWNQGPYLTIPTTMMRF 663
Query: 437 HGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--- 492
+ +Q+ ++ +S LEPVF LD L ST WR+N+ + V+ + W G +A +
Sbjct: 664 KDSVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPAT 723
Query: 493 VDQEDVPLPEKPNT-DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
++ ++ +PEKP+ +D T+ ++ +K Q + H++RC L +AR ++
Sbjct: 724 AEKCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV- 782
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FY PHNLDFRGRAYP+ P+L+ +G DLCRG+L F PLG+ GL WL+IHLANLY G
Sbjct: 783 FYIPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GY 840
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK S++ RV F+++H++DIFDSAD PL+G+RWWL AEDP+QCLA C L+ ALRS P
Sbjct: 841 DKASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSK 900
Query: 672 TISHIPVH 679
S +PVH
Sbjct: 901 FESSLPVH 908
>gi|357516853|ref|XP_003628715.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522737|gb|AET03191.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 251
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 188/244 (77%), Gaps = 9/244 (3%)
Query: 264 FKSTKKKNATDNNLEGDSEP--------LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
+ TK K AT + + DS P + EKL KE+++L+ +V SLIKKQK QQ
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
GIVKG +KPWGQ+A VKVG RLIQLL+ETAY++PP ++ GD PDI PAF HTLK+ +
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 376 KEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
++ G RRYGVIECDP+++KGLEKT R+M+IPYMPMLVPP NW GY++G + FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD 494
R HGA+QQR+ +K P++QL+ +F+AL+TLG+TKWRVNK +LGVID++WA+GG +A LVD
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVD 240
Query: 495 QEDV 498
++DV
Sbjct: 241 RDDV 244
>gi|406698149|gb|EKD01391.1| Rpo41 [Trichosporon asahii var. asahii CBS 8904]
Length = 1321
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 278/488 (56%), Gaps = 33/488 (6%)
Query: 213 YFNNLPADMMAVIT---MHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y + LP +A+IT + +++G N G +++++ +G AIE E R +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDG-MKLLRGVMGVGRAIEAEYRADMIRSIAGE 491
Query: 270 KNATDNNLEGDSEPLTNDPEKLI---------KEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
K+ + +P T P +L +E+EK K + Q ++
Sbjct: 492 KSRLWQKV---IDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLR 548
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETA-YIQPPVDQL-GDSPPDIRPAFVHTLKSFTKEA 378
V + PW + +G L++ L++TA ++ D L G+ + +PAF H+ E
Sbjct: 549 AVWTPPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSF-----EY 603
Query: 379 LKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
++GR+ GVI+ +P+V K L R +I P ++PMLVPP W+ +N+G + +P+ +MR
Sbjct: 604 VRGRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNPWKAWNQGPYLTIPTTMMRF 663
Query: 437 HGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--- 492
+ +Q+ ++ +S LEPVF LD L ST WR+N+ + V+ + W G +A +
Sbjct: 664 KDSVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPAT 723
Query: 493 VDQEDVPLPEKPNT-DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
++ ++ +PEKP+ +D T+ ++ +K Q + H++RC L +AR ++
Sbjct: 724 AEKCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV- 782
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FY PHNLDFRGRAYP+ P+L+ +G DLCRG+L F PLG+ GL WL+IHLANLY G
Sbjct: 783 FYIPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GY 840
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK S++ RV F+++H++DIFDSAD PL+G+RWWL AEDP+QCLA C L+ ALRS P
Sbjct: 841 DKASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSK 900
Query: 672 TISHIPVH 679
S +PVH
Sbjct: 901 FESSLPVH 908
>gi|147865920|emb|CAN83054.1| hypothetical protein VITISV_027927 [Vitis vinifera]
Length = 1299
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/233 (61%), Positives = 160/233 (68%), Gaps = 49/233 (21%)
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS---------------- 541
VPLPEKP+T+D TEI+ WKW + AKK N E+HS RCD E+KLS
Sbjct: 934 VPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSLMIKPGFEDSLAQMKY 993
Query: 542 ---------------------------------VARKMKDEEGFYYPHNLDFRGRAYPMH 568
VARKMKDEEGFYYPHNLDFRGRAYPMH
Sbjct: 994 WRGSVKSRLLWLPSLEELCSFVSFSAKQXHFEQVARKMKDEEGFYYPHNLDFRGRAYPMH 1053
Query: 569 PYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
P+LNHL SDLCRGVLEF EG PLGK+GL WLKI LANLYAGGV+KLSY+GR+AF +NHLD
Sbjct: 1054 PHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLD 1113
Query: 629 DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMV 681
D+FDSAD PL G RWWL AEDPFQCLA CINLSEALRS SP + ISH+P+H +
Sbjct: 1114 DVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQL 1166
>gi|145350935|ref|XP_001419848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580080|gb|ABO98141.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 922
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 188/571 (32%), Positives = 294/571 (51%), Gaps = 55/571 (9%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
R+Q + E A E+ Y++L + LP V+ L ++ PL +A+ ++Q +
Sbjct: 63 RKQREAENLAVEREVMRYKELARKTFAAGIGAQLPVVQKLLASFYVPLVEALTEEQEKIR 122
Query: 203 DKWKHM---TYAPYFNNLPADMMAVITMHKLVGLLMT----NAGEVRVVQAACQIGEAIE 255
+ Y Y L D +AV+T+H + LM N G + + A Q+G A++
Sbjct: 123 GNVPGVDRRVYGHYLGLLEPDKLAVLTLHATLSTLMKGDGRNNGAAKFISVADQVGSAVQ 182
Query: 256 NEA---RIQSFFKSTKK--KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
E R++S K+ K+ + + N EG+ + + + E R+ + K
Sbjct: 183 AEVNLERMRSAEKAAKEAFRRSRLVNTEGNVKEIDDAAEH----------RINLALDTSK 232
Query: 311 LQQVRGIVKGH---VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF 367
+ ++ + K +++ WG++ +K+G L+ LM TA I P D+ G+ PAF
Sbjct: 233 MNTIKSVSKHARQALENAEWGREIRLKIGTVLLTALMNTAKIGVP-DEKGELL--TLPAF 289
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIP--YMPMLVPPLNWRGYNR 423
H K YG++ + + + E R ++P + PM++PP W YN+
Sbjct: 290 YHDYKEAG--------YGMLHWHDSIYRFINTETMTRAALVPVRHFPMVIPPRYWERYNK 341
Query: 424 GGHFFLPSYVMR----THG-ARQQRETIKMTPRS--------QLEPVFQALDTLGSTKWR 470
GG+ + MR G +R Q ++ R Q +PV AL+ LG T W+
Sbjct: 342 GGYLRADNLCMRGKYSNEGPSRAQIAALEEKAREADASGEPVQYQPVLDALNALGQTAWQ 401
Query: 471 VNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD--DETEIKKWKWKVKTAKKQNSE 528
+N +L +++ +WA GG +A + + ++ LP P + E+ + V+ KK N E
Sbjct: 402 INTDVLPIVEEVWARGGGVAEVPLRAELQLPRWPGGGLPGKGEVIDFLQSVRKTKKSNME 461
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
HSQRCD +KL VAR+MK+E Y+PHNLDFRGRAY MH +LNH+GSDLCRG+L F E
Sbjct: 462 LHSQRCDFLIKLQVAREMKNEPNIYFPHNLDFRGRAYTMHVHLNHIGSDLCRGLLRFNEK 521
Query: 589 HPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAE 648
PLG+ GL W+ I A L+ G DKL + RV F ++ ++D+ SA PL WW AE
Sbjct: 522 KPLGERGLRWMHIQCATLFGNGADKLPMDERVQFIKDRIEDVRASAQDPLAKDAWWQEAE 581
Query: 649 DPFQCLATCINLSEALRSPSPESTISHIPVH 679
+P+QCLATCI L +AL P +S++PVH
Sbjct: 582 EPWQCLATCIELDKALELSDPTQFMSNLPVH 612
>gi|46403038|gb|AAS92533.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 182/514 (35%), Positives = 276/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR+
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRI 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSPSP + S +PVH
Sbjct: 729 KAEDPWQCLATCFELAAALRSPSPSAYESSLPVH 762
>gi|443922649|gb|ELU42059.1| Rpo41p [Rhizoctonia solani AG-1 IA]
Length = 1371
Score = 298 bits (764), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 233/369 (63%), Gaps = 16/369 (4%)
Query: 317 IVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPPDIRPAFVHTLKSF 374
IV S P W Q V+VG L+ +M +AYI+ ++ G++ + +PAF+H+
Sbjct: 556 IVANMESSMPEWTQVVRVRVGSFLVDSVMNSAYIKRNGTNESGENLCEEQPAFMHSY--- 612
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSY 432
E ++G++ GVI+ +P+V + + + R + P ++PMLV P W Y++GG+ LP+
Sbjct: 613 --EYVRGKKLGVIKLNPVVGEKMARDPIRETLHPRHLPMLVKPQPWEDYDKGGYLKLPT- 669
Query: 433 VMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
VMR + +Q +K + ++ V++ LD LG T WR+N +IL V+ ++W G +AG
Sbjct: 670 VMRIKDSPEQLSYLKHASAAGHVDFVYECLDALGETPWRINDKILNVVLQVWNEGKGMAG 729
Query: 492 LVD-QEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ Q D+ P KP DD + K+K+ H +RC++ KL VAR + DE
Sbjct: 730 IPPIQLDIEEPPKPEEDDPRARATYLLKLKSILTDKRNNHGERCNVNYKLEVARFVNDE- 788
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
FY PHNLDFRGRAYP+ P+LNH+G DLCRG+L F E PLG+ GL WLKIHLAN++ G
Sbjct: 789 -FYMPHNLDFRGRAYPIPPHLNHIGDDLCRGLLLFAERRPLGERGLRWLKIHLANVF--G 845
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK S++ RV F E HL++I DSA+ PL G++WWL A+DP+QCL+TC+ L+EAL+ P PE
Sbjct: 846 YDKASFDERVLFVEKHLEEIRDSAENPLNGKQWWLKADDPWQCLSTCMELTEALKGPVPE 905
Query: 671 STISHIPVH 679
S++PVH
Sbjct: 906 LYRSNLPVH 914
>gi|25777802|gb|AAN75608.1| RPO41 [Cryptococcus neoformans var. neoformans]
Length = 1202
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 181/514 (35%), Positives = 275/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
V K + + + H D + W + + VG L+ L++ A ++
Sbjct: 384 VG------KNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEMITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WRV
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRV 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GNQKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELASALRSPNPSAYESSLPVH 762
>gi|334362824|gb|AEG78618.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/514 (35%), Positives = 276/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ ++A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KASVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR+
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRI 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELAAALRSPNPSAYESSLPVH 762
>gi|58266658|ref|XP_570485.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110360|ref|XP_776007.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258675|gb|EAL21360.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226718|gb|AAW43178.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1202
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 181/514 (35%), Positives = 275/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
V K + + + H D + W + + VG L+ L++ A ++
Sbjct: 384 VG------KNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEMITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WRV
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRV 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELASALRSPNPSAYESSLPVH 762
>gi|334362790|gb|AEG78585.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/514 (35%), Positives = 276/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ ++A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KASVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR+
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRI 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELAAALRSPNPSAYESSLPVH 762
>gi|58266656|ref|XP_570484.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110362|ref|XP_776008.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|25956307|gb|AAN75721.1| RPO41 [Cryptococcus neoformans var. neoformans]
gi|50258676|gb|EAL21361.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226717|gb|AAW43177.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1180
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 181/514 (35%), Positives = 275/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
V K + + + H D + W + + VG L+ L++ A ++
Sbjct: 384 VG------KNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEMITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WRV
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRV 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELASALRSPNPSAYESSLPVH 762
>gi|25573208|gb|AAN75176.1| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1180
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 275/515 (53%), Gaps = 44/515 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD------SKPWGQDALVKVGCRLIQLLMETAYIQPPVD- 354
V + GI+ + D + W + + VG L+ L++ A ++
Sbjct: 384 VGK-------NEGGGILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKD 436
Query: 355 -QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPM 411
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PM
Sbjct: 437 RNTGEIITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPM 491
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWR 470
LV P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR
Sbjct: 492 LVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWR 551
Query: 471 VNKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQ 525
VN+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 552 VNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQ 611
Query: 526 NSEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L
Sbjct: 612 QRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLT 669
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWW
Sbjct: 670 FGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWW 727
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 728 LKAEDPWQCLATCFELAAALRSPNPSAYESSLPVH 762
>gi|56566235|gb|AAN75149.2| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1202
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 182/514 (35%), Positives = 274/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
V K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 VG------KNEGGRILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WRV
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRV 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELAAALRSPIPSAYESSLPVH 762
>gi|405119910|gb|AFR94681.1| mitochondrial-related RNA polymerase [Cryptococcus neoformans var.
grubii H99]
Length = 1324
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 275/515 (53%), Gaps = 44/515 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+ + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 388 KAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 445
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 446 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 505
Query: 302 VTSLIKKQKLQQVRGIVKGHVD------SKPWGQDALVKVGCRLIQLLMETAYIQPPVD- 354
V + GI+ + D + W + + VG L+ L++ A ++
Sbjct: 506 VGK-------NEGGGILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKD 558
Query: 355 -QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPM 411
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PM
Sbjct: 559 RNTGEIITELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPM 613
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWR 470
LV P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR
Sbjct: 614 LVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWR 673
Query: 471 VNKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQ 525
VN+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 674 VNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQ 733
Query: 526 NSEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L
Sbjct: 734 QRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLT 791
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWW
Sbjct: 792 FGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWW 849
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 850 LKAEDPWQCLATCFELAAALRSPNPSAYESSLPVH 884
>gi|358055118|dbj|GAA98887.1| hypothetical protein E5Q_05575 [Mixia osmundae IAM 14324]
Length = 1375
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 193/570 (33%), Positives = 278/570 (48%), Gaps = 53/570 (9%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADM---CEQKLAPNLPYVKSLFLGWFEPL------- 190
L RQ ++E A + A ++Q M Q+++ ++SL GW E L
Sbjct: 396 LYERQRQLEDSAMQAAVVQFQTEREKMNTEVAQRVSMQQRSLQSLMTGWIEELTVVLTRV 455
Query: 191 ----RDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
R I D T ++ YF LP D +A +T+ L+
Sbjct: 456 QEQMRLLIDSDAVTTKETVIEGCKIFATDRAADDIYFLLLPPDKLAYLTVSVLLSHNTPG 515
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK 297
A +V + IG+A+E E +S + + A D ++E E
Sbjct: 516 AAMQKVTRCVMAIGKAVEVEHYAMKLQESHRLELA--------------DALHAVREAEA 561
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
S + + + VR W ++G + L ETA IQ G
Sbjct: 562 ANGVTESRVVARIWRDVRARQGDSSREVFWSHQTRARIGAMCLHFLCETAKIQRSAVIDG 621
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIP-YMPMLVPP 415
+I+PAFV T + F+ G++ G+I+ + V + L+K + P Y+PMLVPP
Sbjct: 622 QEIIEIQPAFVQTYQ-FSA----GQKIGIIKFNAAVTERLDKDSMLSTLTPRYLPMLVPP 676
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKR 474
W +N+G + P V+R + +Q +K S QL+ F +LD LGST W VN+
Sbjct: 677 RPWTAHNKGAYLMHPVSVLRIKDSMEQTAYLKQASDSGQLDEAFASLDYLGSTAWNVNRD 736
Query: 475 ILGVIDRMWASGGCLAGL-----VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK 529
+ GVI W SG + G+ ++ P P + + +VK A+ Q +
Sbjct: 737 VFGVIASAWNSGLTIGGIPVADPLNAIKDPEPPAGGFTSPRQQDTHRAEVKAAEMQRRQH 796
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
+S RCD+ KL +AR +E FY+PHN+DFRGRAYP+ P L+H+G DLCRG+L F E
Sbjct: 797 YSIRCDLNYKLEIARAYLNER-FYFPHNMDFRGRAYPIPPNLSHIGDDLCRGLLTFAERK 855
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
LG GL WL +HLAN++ G DK S R F ++HL DIFDSAD+PL+G RWWL AE+
Sbjct: 856 RLGATGLRWLHVHLANMF--GFDKASLAAREQFAKDHLTDIFDSADKPLDGARWWLKAEE 913
Query: 650 PFQCLATCINLSEALRSPSPESTISHIPVH 679
P+QCLATC LS+ALRSP PE S +PV
Sbjct: 914 PWQCLATCFELSKALRSPVPEDYRSSLPVQ 943
>gi|54112152|gb|AAV28755.1| RPO41p [Cryptococcus gattii]
Length = 1180
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/514 (34%), Positives = 274/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ ++A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KASVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST WR+
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRI 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLA C L+ ALRSP P + S +PVH
Sbjct: 729 KAEDPWQCLAACFELAAALRSPDPSAYESSLPVH 762
>gi|321262647|ref|XP_003196042.1| RPO41p [Cryptococcus gattii WM276]
gi|54112187|gb|AAV28789.1| RPO41p [Cryptococcus gattii]
gi|317462517|gb|ADV24255.1| RPO41p [Cryptococcus gattii WM276]
Length = 1180
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/514 (34%), Positives = 275/514 (53%), Gaps = 42/514 (8%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ ++A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KASVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVTKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N+GG+ VMR + +Q++ +K + LEPVF LD L ST W++
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWQI 552
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+R+ V+ W G +A + ED PEKP++ D+ + ++ K K Q
Sbjct: 553 NRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQ 612
Query: 527 SEKHSQRCDIELKLSVARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
+ H++RC + +AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 613 RKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTF 670
Query: 586 EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWL 645
PLG+ GL WL+IHLAN+Y G DK S+ R F + H DIFDSAD PL+G+RWWL
Sbjct: 671 GTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHEADIFDSADHPLDGKRWWL 728
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC L+ ALRSP+P + S +PVH
Sbjct: 729 KAEDPWQCLATCFELAAALRSPNPSAYESSLPVH 762
>gi|270358663|gb|ACZ81452.1| Rpo41 [Cryptococcus heveanensis]
Length = 1256
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 174/513 (33%), Positives = 275/513 (53%), Gaps = 60/513 (11%)
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIE 255
+A K K Y LP + +A+IT+ ++ + M+ +G + + ++ +G+A+E
Sbjct: 308 SASSKMKRSVLVMYLQLLPVEKLALITILEV--MRMSGSGGISDGMKALRGMLAVGKAVE 365
Query: 256 NEARIQSFFKSTKKKNATDNNLEG-DS-------EPLTNDPEKLIKEQEKLKKRVTSLIK 307
E R ++ N+ G DS +P T P + + + +R+ +K
Sbjct: 366 TEFRAETI-----------KNIAGVDSHHWLRTIDPQTQKPSRQLVG--SVWRRIGEQVK 412
Query: 308 KQKLQQVRGIVKG--HVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
KL++ + H D + PW Q A + VG L+ L++ A V+++G +P
Sbjct: 413 TSKLEETSDSLSTATHDDLHQVWTPPWSQMAQLGVGSELVDALLKVA----KVERVGRNP 468
Query: 361 P------DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
+ +PAF H E ++G++ GVI+ +P+V L + ++I ++PML
Sbjct: 469 ETGEEVVEEQPAFTHAY-----EYIRGKKLGVIKHNPVVAARLARDSVGVVIHPKHLPML 523
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRV 471
V P W +N GG+ +MR + +Q+ +K + + LEPVF LD L ST W +
Sbjct: 524 VEPKPWTSHNNGGYLLHSVPIMRYKESAEQQSYLKTASEQGHLEPVFHGLDVLSSTAWSI 583
Query: 472 NKRILGVIDRMWASGGCLAGLVDQED---VPLPEKPNTDDETEIKKWKW--KVKTAKKQN 526
N+++ VI +W SG +A + E+ +PEKP+ D+ K+ + ++K+
Sbjct: 584 NRKVFDVILNVWNSGEAIADIPASEEKSTYDVPEKPDPRDQDPQKRSLYIERMKSVMAAQ 643
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ H++RC L +AR ++ FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F
Sbjct: 644 RKDHAERCKFNYNLEIARSYLNDV-FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFG 702
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
LG+ GL WL IHLAN+Y G DK S+E R F + H DIFDSAD PL+G+RWWL
Sbjct: 703 NKKALGETGLKWLHIHLANVY--GFDKASFEERARFAQEHEADIFDSADNPLDGKRWWLQ 760
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AEDP+QCLATC ++ ALRS P S +P+H
Sbjct: 761 AEDPWQCLATCFEIAAALRSSDPTQYESSLPIH 793
>gi|89148146|gb|ABD62816.1| mitochondrial single-subunit RNA polymerase [Polysphondylium
pallidum]
Length = 862
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 170/596 (28%), Positives = 312/596 (52%), Gaps = 76/596 (12%)
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
LD+ ++ + Q +K+ + Y + + E + A K Y+ LL D + +
Sbjct: 14 LDAKTIAELQKQKEEESAKYKELYEKIKLETDFEISVTDTARKAYRQLLNDTSMIQRSTG 73
Query: 176 LPYVKSLFLGWFEPLRD----------------AIAKDQATAQDKWKHMTYAP----YFN 215
L +K++ W++PL +++D + ++ P
Sbjct: 74 LKSIKNVMFQWYDPLIKHTTQELKSFQQANASVLLSEDPEAEAEALNPLSRVPSHVEVLT 133
Query: 216 NLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ-IGEAIENEARIQSFFKSTKKKNATD 274
LP + +I ++++V ++++ ++ + + IGE++ E ++Q
Sbjct: 134 RLPMKKLCLIALNQMVSEILSDPQRGTIMTSIVENIGESVLAEYQMQ------------- 180
Query: 275 NNLEGDSEPLTNDPEKLIKEQEKLK-KRVTSLIKKQ--KLQQVRGIVKGHVDSKPWGQDA 331
L+K+ ++L+ KR+ ++ ++ ++ ++ D
Sbjct: 181 ----------------LLKKYDRLQYKRLMKPFNGAVATVRTIQNYMRRAHNNLEQESDT 224
Query: 332 LVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDP 391
+ KVG +++ +M++ I +D G+ + PAF + + ++YGVI C
Sbjct: 225 ITKVGSFMVKSIMDSCMINKYID--GEDIDEKVPAFYYKYRYNN-----NKKYGVISCHD 277
Query: 392 LVRKGLEKTGRHMIIPYM-----PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
V +++ H ++ M PM+VPP W N+G + P ++MRT+G++ Q+ ++
Sbjct: 278 NVYSLMDEG--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSL 335
Query: 447 KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT 506
+S L +++ L+ LG W+ N++++ ++ W GG +A L + D LPE P+
Sbjct: 336 Y---QSDLTNIYEGLNVLGEVPWKTNEKMMSILLEAWEKGGGIADLPSRYDFELPESPSQ 392
Query: 507 DD---ETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
+D E + + K++ K N++ HS RCD KL+VA++++ E FY+PHN+DFRGR
Sbjct: 393 EDLQDEKVKRDFNKKLRKVKGANNDLHSLRCDTLYKLNVAKQLQ-EYTFYFPHNVDFRGR 451
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
+YP+ P+LNH+GSD CR L+F E LG+ G WLK+ +ANL+ GVDK+S+E RVAFT
Sbjct: 452 SYPIPPHLNHMGSDFCRSTLKFAEEKELGERGFEWLKVQVANLF--GVDKVSFEDRVAFT 509
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
++++I+DSADRPL+G+RWWL A+ P+Q LA CI L++A+RS +P + S +P+H
Sbjct: 510 MENIENIYDSADRPLDGKRWWLKADSPWQTLAACIELTDAIRSGNPTTFKSSLPIH 565
>gi|255080246|ref|XP_002503703.1| predicted protein [Micromonas sp. RCC299]
gi|226518970|gb|ACO64961.1| predicted protein [Micromonas sp. RCC299]
Length = 899
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 198/602 (32%), Positives = 297/602 (49%), Gaps = 96/602 (15%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+ RQ + E A ++ + Y++ + LP + L G+F PL AI +Q
Sbjct: 27 LEERQRRNEILAVDREVERYKEEARITRRRGGGAELPLGRRLLQGFFAPLTSAIRLEQEH 86
Query: 201 AQDKWKHM---TYAPYFNNLPADMMAVITMHKLVGLLM-----------TNAGEVRVVQA 246
+ K + + Y P+ L D +AVIT+H ++ LM AG + V+A
Sbjct: 87 VRLKVRGVDRSNYGPFLLMLNPDKLAVITLHTVISQLMKGEQMFGEPNEAQAGMCKFVRA 146
Query: 247 ACQIGEAIENE---ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+G++++ E AR++ + TKK+ LE + P +D +K +
Sbjct: 147 VEMLGQSVQAEVNLARLRQRARLTKKRY-----LESKNGPHVHD--------RFMKVNME 193
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SL ++ V + + ++ WG KVG L++LL+ TA I+ P PD
Sbjct: 194 SLKTLTTVRGVARLARTALNDSDWGGVTRSKVGAALVKLLLTTARIRVP-------GPDG 246
Query: 364 R----PAFVHTLKSFTKEALKGRRYGVI----------ECDPLVRKGLEKTGRHMIIPYM 409
PAF H + K K RYGVI + + ++R L + YM
Sbjct: 247 ELIEVPAFYH---DYVKH--KAHRYGVISWHDAFFTFMDDEAMIRATLSP------VRYM 295
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMR----THGARQQRETIKMTPR----------SQLE 455
PM+ PP W +N GG+ S VMR THG +R+ + + ++ +
Sbjct: 296 PMVTPPRPWTRFNAGGYLRTESIVMRGHYTTHGP-SKRQMLALHGEQSGAELDGRAAKFQ 354
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD-------- 507
PV AL+ LG T WR+N+ +L V++ +WA+GG A + +E+VP P P
Sbjct: 355 PVLDALNVLGRTAWRINEDVLRVMEEVWATGGGRADVPPRENVPDPTWPANPYGLRRSRG 414
Query: 508 --------DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
++ + + K++N E HSQRCD +KL VA++M+DE+ Y+PHN+D
Sbjct: 415 QLAATALPSRQDVAGFIHSLNRTKQRNRELHSQRCDFLIKLQVAKEMRDEDRIYFPHNID 474
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGRAY MH +LNHLGSD+CRG L F + PLG GL WL I ANLYAGGVDKL + R
Sbjct: 475 FRGRAYTMHVHLNHLGSDICRGALVFADARPLGNDGLDWLYIQAANLYAGGVDKLPMDER 534
Query: 620 VAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
+ E+ + + SA PL +G +WL AEDP+QCLA C + A S P + + +P
Sbjct: 535 RQWIEDRVHLLEQSARDPLGPDG-GFWLDAEDPWQCLACCFEIERARASGDPPAYMCRLP 593
Query: 678 VH 679
VH
Sbjct: 594 VH 595
>gi|395323448|gb|EJF55919.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 1273
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/497 (34%), Positives = 270/497 (54%), Gaps = 52/497 (10%)
Query: 204 KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQ 261
K + + +P+ L + +++IT+ +++ L + + ++ +A +G A+E E + +
Sbjct: 382 KSEEILLSPFLRMLSPEKLSLITIMEMMNLHGSGGVQDGMKTARALLSVGRAVEAEHKAE 441
Query: 262 SFFKSTKKKN------ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
KK N A + G T D K + +RVT+ + ++
Sbjct: 442 I----CKKNNISIPVPAVNAPRAGVQNIFTGDGYK-----DLYARRVTAAKYMEDAEEW- 491
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKS 373
+ W Q VKVG L+ +M+ A + + + G+ + +PAF H+
Sbjct: 492 --------TSDWSQLIRVKVGSFLLDCIMDVATVSRTIQDPRTGEKFTEEQPAFSHSY-- 541
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
E +GR+ GVI+ +P V + K + ++PMLV P W YN GG+ + S
Sbjct: 542 ---EYQRGRKLGVIKFNPAVADRMSKDPIADTLHPRHLPMLVKPKPWLSYNNGGYLYSRS 598
Query: 432 YVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
+ MR +R+Q ++ + +LE VF LD LGST W++N+R+ V+ ++W SG A
Sbjct: 599 WAMRFKDSREQEIYLRHASEAGRLELVFAGLDVLGSTPWQINRRVFDVVLQVWNSGERFA 658
Query: 491 ----GLVDQEDVPLPEKPNTDDETEI----KKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
+ D+ + PE +TD++ ++ ++ +W + + HS RC + K+ +
Sbjct: 659 KIPPAIPDEPEPVRPENMDTDNKAKVVYLERQRQWM-----QNKAANHSDRCSVNYKVEI 713
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
AR + Y PHN+DFRGRAYP+ P+L+H+G DL RG+L FEE PLG GL WLKIH
Sbjct: 714 ARAFLGD-TIYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLIFEEKKPLGTRGLRWLKIH 772
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
LANLY G DK S++ RV + HL+DIFDSAD+PLEGRRWW A+DP+QCLATC+ L+
Sbjct: 773 LANLY--GYDKASFDERVEYVHKHLEDIFDSADKPLEGRRWWTKADDPWQCLATCMELTS 830
Query: 663 ALRSPSPESTISHIPVH 679
ALRSP PE+ +PVH
Sbjct: 831 ALRSPDPEAYECGLPVH 847
>gi|409043331|gb|EKM52814.1| hypothetical protein PHACADRAFT_261459 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1324
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/362 (42%), Positives = 221/362 (61%), Gaps = 19/362 (5%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W Q V+VG L+ LM+ A + + +D+ G+ + +PAF H+ E L+G++ G
Sbjct: 552 WTQTIRVRVGSFLVDALMDVATVSRTAIDKHGELHTEEQPAFYHSY-----EYLRGQKLG 606
Query: 386 VIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR 443
VI+ +P+V L K R + P ++PMLV P W +++GG+ + + VMR +R+Q+
Sbjct: 607 VIKLNPVVADRLAKDQVRETLHPRHLPMLVRPKPWLSHDQGGYLYNKTSVMRYKDSREQQ 666
Query: 444 ETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLP 501
++ + + LE V+ +LD LG T W++N+ I V+ ++W SG L + D P P
Sbjct: 667 SYVREASSQGALELVYASLDVLGGTPWKINRHIFDVVLKVWNSGERLGKIPPAMYDQPEP 726
Query: 502 EKP---NTDDETEIKKW-KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
EKP +TD + ++ + K +KK N+ HS RC+ K+ +AR + Y PHN
Sbjct: 727 EKPADHDTDPKAKVAYLQRHKAYMSKKANN--HSDRCNTNYKIEIARAFLGDT-VYLPHN 783
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
+DFRGRAYP+ P LNHLG DL RG+L+F E PLG+ GL W+KIHLANLY G DK S++
Sbjct: 784 VDFRGRAYPIPPNLNHLGDDLSRGLLKFAEAKPLGERGLRWMKIHLANLY--GYDKASFD 841
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
RV F HLDDIFDSA PLEGR WW A+DP+QCLATC+ + AL SP P S +P
Sbjct: 842 ERVVFVHEHLDDIFDSATNPLEGRGWWKKADDPWQCLATCMEIRAALESPEPTEYASSLP 901
Query: 678 VH 679
VH
Sbjct: 902 VH 903
>gi|258573307|ref|XP_002540835.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901101|gb|EEP75502.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1231
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 197/617 (31%), Positives = 303/617 (49%), Gaps = 58/617 (9%)
Query: 91 SESELSGSEEVQELIDQFNEKGV---SILDSSSMLDK-----QPKKKGTGMGTAKYYMLK 142
SE LS E+ I ++KG+ S+ ++ S+ DK + + +G K L+
Sbjct: 161 SELNLSPPEDAIPEIRSVSQKGLGLQSLKEALSLFDKSKSFRELEAEGEISSVEKQRRLE 220
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATA- 201
+ I E W KE +D + + L P+ + +L W + L +I + +A
Sbjct: 221 QDSIVAAMERWR---KESEDRAS---KTGLGPSEKKMGALLWDWQQCLLTSIQSEMQSAL 274
Query: 202 --QDKWK-------HMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQI 250
Q+K + YAP+ + + A+ ++ IT+ + L + + +R+ + +
Sbjct: 275 RAQEKERKTPEDNDRCEYAPFLSTIGAEKLSAITILATMNALGRSGMDKGIRLTRLIMVL 334
Query: 251 GEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
G+A++ E +S T++ + + EKLI ++ K R
Sbjct: 335 GKAVQEEYLADRIRESAYDSAHTNSANSANRAKMV---EKLIASKDHSKWRYL------- 384
Query: 311 LQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI----RPA 366
VR + H + W K+G L +L + + PV+ ++ +PA
Sbjct: 385 ---VRKYNESH-EPVNWSAATEAKIGALLASMLFSSTKV--PVEHKNPETREVTVSKQPA 438
Query: 367 FVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H + KG G ++ D +V K + H++ ++PM+ PP W Y+ GG
Sbjct: 439 FRHVY-----QLEKGFSIGYVQLHDSIVEKLGREPASHLLAKHLPMVSPPAPWSSYHHGG 493
Query: 426 HFFLPSYVMRTH--GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
PS V+R A Q + + R L+ +F L+ LG T W++N+ + V+ W
Sbjct: 494 FLEQPSLVIRARPDNALQLQYVKAASRRGDLDEIFAGLNVLGKTGWQINRPVFDVMLEAW 553
Query: 484 ASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
SG LA + E ++P PEKP+T D +K + + S HSQRC L+L V
Sbjct: 554 NSGKELADIPAAEPNLPEPEKPDTGDSGSLKAYYRAKAVVDNKRSGFHSQRCFQNLQLEV 613
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
AR E FY PHN+DFRGRAYP+ PY N +GSD+CRG+L F EG LG+ GL WLKIH
Sbjct: 614 ARAYIGET-FYLPHNMDFRGRAYPLPPYFNQMGSDMCRGLLLFSEGRQLGERGLKWLKIH 672
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
LAN+Y G DK S++ R F+ +HLDD+ DSA++ L GRRWWL A DPFQCLA CI L
Sbjct: 673 LANVY--GFDKASFDERAQFSMDHLDDVIDSAEKGLHGRRWWLQAADPFQCLAACIELKN 730
Query: 663 ALRSPSPESTISHIPVH 679
AL P +SH+P+H
Sbjct: 731 ALACADPTKFVSHLPIH 747
>gi|303279985|ref|XP_003059285.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459121|gb|EEH56417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 838
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 184/539 (34%), Positives = 278/539 (51%), Gaps = 65/539 (12%)
Query: 180 KSLFLGWFEPLRDAIAKDQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236
++ + EPL AI K+QA + K Y P+ L D +AVIT+H ++ LM
Sbjct: 22 RNFLHNFLEPLSRAIEKEQAEIRKKVPGADRTNYGPFMLMLNPDKLAVITLHAVISQLMM 81
Query: 237 N------------AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
G+ + V+ ++GEA++ E + + K +
Sbjct: 82 GDDRVKFSGDNGQVGKSKFVRVVERLGEAVQAEVNLSRLKQRGKVR-------------- 127
Query: 285 TNDPEKLIKEQEKLKKRVT--SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQL 342
DP + + + V+ SL K ++ V + ++ WG A VK+G L +L
Sbjct: 128 PKDPSERERRFREETAGVSAKSLSKLTTVRSVAKFARRALNDSDWGMTARVKLGSVLAKL 187
Query: 343 LMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG- 401
L+ETA I+ P + G+ +I+PAF H + ++ +RYG++ P +E
Sbjct: 188 LVETAKIEVPDPESGEL--EIKPAFEHHYEYVNRQ----QRYGMVSWHPAFFDYIEHEDM 241
Query: 402 RHM---IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR-------------QQRET 445
RH ++ YMPM+ PP W +++GG+ ++VMR + R +Q+ +
Sbjct: 242 RHAQMSLVRYMPMVTPPRPWSRFDQGGYLCSETFVMRGNYTRLGPSWGQIMALLGEQKRS 301
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
+ +PV AL+ LG T W VN+R + V+ ++W GG +AG+ + V P P
Sbjct: 302 DSDGECASYQPVLDALNVLGKTPWVVNERTVDVMQKVWDDGGGIAGVPPRRTVDEPVWP- 360
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
D E K +VK ++N E HSQRCD +KL VA++M+DEE ++PHN+DFRGRAY
Sbjct: 361 --DPGEYVNAKVRVK---RENRELHSQRCDFLIKLKVAQEMRDEEKIFFPHNIDFRGRAY 415
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY-AGGVDKLSYEGRVAFTE 624
MH +LNH+GSD+CRG L F+E PLG+ GL WL + ANLY AGGVDKL + R + +
Sbjct: 416 TMHAHLNHIGSDVCRGALLFQEARPLGENGLDWLYVQAANLYAAGGVDKLPLDERREWMK 475
Query: 625 NHLDDIFDSADRPL----EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
LD I SA PL +WL AE+P+QCLAT I ++ A+ S P S +PVH
Sbjct: 476 TRLDRIKASARDPLCADDANCAFWLEAENPWQCLATFIEIAAAVDSGDPASYACRLPVH 534
>gi|340960508|gb|EGS21689.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1394
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 212/692 (30%), Positives = 337/692 (48%), Gaps = 66/692 (9%)
Query: 38 TLLDSSCPLLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIAS----ES 93
+LL SS G + ++L S L Q + T+++ VLT A+ AE S +
Sbjct: 224 SLLTSS----GAKLKTYLERYMSVLPQDSATEALDLGDVLTDDDLAAIAENCPSLSLSQE 279
Query: 94 ELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAK-----YYML-- 141
L+ +E EK + +S S P+ +KGTG+ K +Y L
Sbjct: 280 VLAPAETEDAATTTIAEKFAADRESQSAPKSLPEVLATPQKGTGLEALKSTLALFYELPP 339
Query: 142 ----------KRR--QIKIETEAWEQAAKEYQDLLADMCEQKLAPNL--PYVKSLFLGWF 187
+RR Q ++E + E A +++++ + L P + P + S W
Sbjct: 340 GADVAALPLEQRREFQSRLERDVLEAALQKWREDNESLASMGLNPQISAPSLSSKLYQWH 399
Query: 188 EPLRDAIAKDQATAQ----------DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
+ L IA++QA + + Y P A +A T+ ++ LL +
Sbjct: 400 QALERRIAEEQAKVEASENVPKKSAEDLDRCLYGPLLLQGSATRLAAATIISILSLLSLH 459
Query: 238 AGE--VRVVQAACQIGEAIENEARIQSFFKSTK-KKNATDNNLEGDSEPLTNDPEKLIKE 294
+ V A Q+ + E + R Q K+ K K+ T+ + +K
Sbjct: 460 GADKGVAASLAVQQVAKVAEEDIRFQIAEKTKKLPKHQTELQKRKARRLIRVKGNGSLKT 519
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K + V +L L + ++ W KVG L+ +META I D
Sbjct: 520 TDKKQLGVATL----PLATTGEMAPAITENTRWPTAIRAKVGALLLTAMMETAKIMVVRD 575
Query: 355 Q--LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIPYMPM 411
+ ++PAF H + + KG++ G+I+ +P + + L++ R ++ ++PM
Sbjct: 576 HPVTKEKVHQLQPAFSHAM-----QLRKGKKVGIIQANPELVEILKREPRAELLARHLPM 630
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMR--THGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
LV P W +++GG S ++R H Q+ R +E + + LD LG T W
Sbjct: 631 LVEPEPWTKFDKGGFLECQSPLIRLKNHEIEQKIYAEAAIERGDMEQMMRGLDVLGKTAW 690
Query: 470 RVNKRILGVIDRMWASGGCLAGL-VDQEDVPLPEKPNTDDETEIKK-WKWKVKTAKKQNS 527
R+N+++ V+ +W G A + ++P+P +P++ D+ K+ W +VK + + S
Sbjct: 691 RINRKVFDVMLTVWNEGIAFANIPALHPNIPIPPEPDSSDDPMKKRIWMRQVKAIQNEKS 750
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
HS RC + +L +AR D+ FY+PHNLDFRGRAYP+ PYLNH+G+D RG+L F +
Sbjct: 751 GMHSVRCFMNFQLEIARAFIDQT-FYFPHNLDFRGRAYPLPPYLNHMGADHMRGMLLFAK 809
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G PLG+ GL WLKIHLAN+Y G DK S + R F +++L +I DSA PL G+RWWL
Sbjct: 810 GKPLGENGLRWLKIHLANVY--GYDKASLDDREKFADDNLANIMDSASNPLGGKRWWLQG 867
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDP+QCLATC L+ AL+SP P +SH+PVH
Sbjct: 868 EDPWQCLATCFELAAALQSPDPTQFVSHLPVH 899
>gi|440637074|gb|ELR06993.1| hypothetical protein GMDG_02315 [Geomyces destructans 20631-21]
Length = 1438
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 189/568 (33%), Positives = 291/568 (51%), Gaps = 50/568 (8%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRD-------A 193
RQIK+E ++ A ++ A + + L +L KSL W E L +
Sbjct: 362 RQIKLEEDSIISAVDRWRKESASLSKMGLDTSL-QTKSLGARMWKWQEALEQRLNQELQS 420
Query: 194 IAKDQATAQDKWKHM-----TYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQA 246
I K +AT + + + Y P+ LP D +A +T+ + L ++ + + +
Sbjct: 421 IDKAEATPEKEKSQLDVERCIYGPFLRYLPTDKLAAVTILTSMQCLSSHGTDKGMPLASV 480
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG +E+E+ ++ +T K+ N + S ++IK + ++ SL
Sbjct: 481 IMSIGANLEDESITETIRNNTTKQGWQQLN-KSASAGKGLGLARVIKNKRTRQQLTDSLA 539
Query: 307 KKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP- 360
K VRG D + W KVG L+ L++TA + ++
Sbjct: 540 K-----LVRGDSAAKHDLSDQWNTEWSATIKAKVGSYLLSALIDTAKVPVTMENTKTQEL 594
Query: 361 -PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPLNW 418
I+PAF HT + G++ G+I + + L++ H ++ ++PM+ P W
Sbjct: 595 LTQIQPAFSHT-----HQYKIGKKTGMILANRALVASLKREPVHSLLAKHLPMVAEPEPW 649
Query: 419 RGYNRGGHFFLPSYVMRTHGA----RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
+N+GG P+ +R G RQ +E R +E +F+ LD LG T W +N+
Sbjct: 650 SEFNQGGFISHPAKAVRIKGGDKNQRQYQEA--AIRRGDMEQMFKGLDVLGKTSWVINRP 707
Query: 475 ILGVIDRMWASGGCLAGLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
+ + W +G +A +E + P PE P + D TE +KW +KT + S HS
Sbjct: 708 VFDTMLEAWNTGEAIANFPAEEPKLEYP-PEPPASKDPTERRKWIRSLKTIENTRSGFHS 766
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
RC +L +AR ++ EE FY+PHNLDFRGRAYP+ PYLNH+G+D CRG+L+F +G L
Sbjct: 767 ARCFQNFQLEIARSLR-EEKFYFPHNLDFRGRAYPIPPYLNHMGADHCRGLLKFGKGREL 825
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+AGL WL++HLAN++ G DK S + R +T +H+DDI+DSA PL GRRWWL AEDP+
Sbjct: 826 GEAGLKWLRVHLANIH--GHDKASLKEREQYTVDHIDDIYDSAMNPLNGRRWWLDAEDPW 883
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA C+ L AL S P +SH+PVH
Sbjct: 884 QCLAACLELKNALDSGDPTKFVSHLPVH 911
>gi|367044972|ref|XP_003652866.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
gi|347000128|gb|AEO66530.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
Length = 1408
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/534 (33%), Positives = 270/534 (50%), Gaps = 49/534 (9%)
Query: 177 PYVKSLFLGWFEPLRDAIAKDQAT----------AQDKWKHMTYAPYFNNLPADMMAVIT 226
P + S W L IA +QA +Q+ Y P+ PA +A +T
Sbjct: 397 PSLNSRLYDWHRALEARIAAEQAKVDKSESAPKKSQEDLDRCLYGPHLLQAPAKRLAAVT 456
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK-KKNATDNNLEGDSEP 283
+ + +L + + + V Q+ + E + R Q KS + + + ++
Sbjct: 457 ILSALSILAMHGADKGIPVSNMVQQVAKIAEEDIRSQILAKSLPYARLKLKHRRQQNARQ 516
Query: 284 LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP------WGQDALVKVGC 337
L E+ I+E + + + V + K +S P W K G
Sbjct: 517 LIRQRERKIEEPPSNEPETGA-----RTLSVNAVSKEIGESPPDRLEARWPTVIRAKFGA 571
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIR-------PAFVHTLKSFTKEALKGRRYGVIECD 390
L+ L+++A I + PD + PAF+HT+ + KGR+ GVI+ +
Sbjct: 572 VLLGALIDSAKIV-----VNREHPDTKQMVTQSMPAFIHTV-----QLKKGRKVGVIQPN 621
Query: 391 PLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR--THGARQQRETIK 447
+ +++ R + ++PM+V P+ W +++GG PS ++R H Q+
Sbjct: 622 RALVDLMKREPRGEALARHLPMVVEPVPWSRFDKGGFIGSPSPLIRLKNHEKEQRFYAEA 681
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPN- 505
R +E + + LD LG T WR+N+ + V+ W SG A + +P+P +P+
Sbjct: 682 AIERGDMEQMMRGLDVLGKTAWRINRPVFDVMLEAWNSGEEFANFPALDPKIPIPPEPDS 741
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
TDD + + W VK A+ + S HS RC I +L +AR +D+ FY+PHNLDFRGRAY
Sbjct: 742 TDDPMKRRLWVRAVKAAENEKSGLHSVRCFINFQLEIARAFRDQT-FYFPHNLDFRGRAY 800
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+ YLNH+G+D RG+L F +G PLGK GL WLK+HL+N+Y G DK S + R F
Sbjct: 801 PLPTYLNHMGADHMRGLLIFAKGKPLGKNGLRWLKVHLSNVY--GFDKASLQEREDFANQ 858
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+L++IFDSAD PL G+RWWLGAEDP+QCLA C L AL SP P + +SH PVH
Sbjct: 859 NLENIFDSADNPLTGKRWWLGAEDPWQCLAACFELKAALSSPDPAAFVSHFPVH 912
>gi|45185910|ref|NP_983626.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|44981700|gb|AAS51450.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|374106832|gb|AEY95741.1| FACR224Cp [Ashbya gossypii FDAG1]
Length = 1295
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 169/485 (34%), Positives = 265/485 (54%), Gaps = 44/485 (9%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFK 265
+ YAPY + + M VIT+ +L+ L T +R +A IG+A+E E R ++ K
Sbjct: 441 LEYAPYITLVNPEKMCVITILELLSLNSTGGVSEGMRTTRAVLAIGKAVEMEYRSEALLK 500
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S K + + +S E +KL +R + + ++++ + +
Sbjct: 501 SEK---SIFKEVRANS-----------NEFKKLVQRAKTTFRNTQIEESKVL-------- 538
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPP-VDQLGDSPPDIR-PAFVHTLKSFTKEALKGRR 383
W + KVG LI +L+ A + VD + + + PA HT + G +
Sbjct: 539 -WPHNIKAKVGSLLISMLIHVAKVNVKGVDPVTNKTVYGKAPAICHTF-----QYRMGSK 592
Query: 384 YGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
GV++ + + ++ + ++PMLV P W +N GG+ F S ++R+ + +
Sbjct: 593 VGVLKLHRSLANQMSSDRLSANFQPQHLPMLVKPRPWTSWNSGGYLFTKSTLIRSKDSPE 652
Query: 442 QRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED-VP 499
Q IK +T + ++ V++ L+ LG T W VNK +L +I ++W SG + Q+D +
Sbjct: 653 QSAYIKAVTGKGVVQNVYKGLNVLGETAWTVNKNMLHIISKVWNSGTEFLDIPPQQDELL 712
Query: 500 LPEKPNTDDETE-----IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LP KP +D +E +K+WK + + + + S RCD KL +AR E+ FY+
Sbjct: 713 LPAKPRGEDGSEPEPIVLKRWKQECRFLNAEYQKHRSMRCDANYKLEIARAFIGEK-FYF 771
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGRAYP+ P+ NHLG+D+ R +L F EG LGK GL WLKIH+ NLY G+DK
Sbjct: 772 PHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWEGKRLGKEGLRWLKIHMGNLY--GLDKQ 829
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
++E RVAFTE HL+DI DSA+ PL G+ WW A+ P+QCLATC+ ++ A + +PE +S
Sbjct: 830 TFEARVAFTEAHLEDIKDSAENPLNGKGWWKKADKPWQCLATCMEINNAYKLSNPEDYVS 889
Query: 675 HIPVH 679
H PVH
Sbjct: 890 HQPVH 894
>gi|403413111|emb|CCL99811.1| predicted protein [Fibroporia radiculosa]
Length = 1321
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 223/363 (61%), Gaps = 20/363 (5%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q VKVG L+ LM+ A + + VD+ G++ + +PAF H+ E L+G +
Sbjct: 537 WTQVVRVKVGSFLVDALMDVATVMRTGVDKRTGEAISEEQPAFFHSY-----EYLRGYKL 591
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI+ +PL+ + + K R + P ++PMLV P W +++GG+ + ++VMR +++Q
Sbjct: 592 GVIKLNPLISEKMAKESIRETLHPRHLPMLVKPKPWLSHDQGGYLYNKTWVMRFKESQEQ 651
Query: 443 RETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ ++ + LE ++ +LD LG+T W++N+RI ++ +W SG + D P
Sbjct: 652 QSYLRHASSLGNLELIYASLDVLGNTPWKINRRIFDIVLEVWNSGTRWCKIPPAAFDAPE 711
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQ----NSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
PEKP D + K T +KQ + HS RC + K+ +AR + Y+PH
Sbjct: 712 PEKPENFDTD--PRAKMIYLTRQKQYALGRANNHSDRCSVNYKIEIARAFLGDT-IYFPH 768
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ P+L+H+G DL RG+L F E PLG+ GL WLKIHLANLY G DK ++
Sbjct: 769 NVDFRGRAYPLPPHLSHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GYDKANF 826
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ RV+F +HLDDIFDSAD PLEG++WW A+DP+QCLATCI L AL+SP P + +
Sbjct: 827 DERVSFVHDHLDDIFDSADNPLEGKKWWTKADDPWQCLATCIELKAALQSPDPHTYECAL 886
Query: 677 PVH 679
PVH
Sbjct: 887 PVH 889
>gi|342319535|gb|EGU11483.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1343
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/572 (30%), Positives = 295/572 (51%), Gaps = 33/572 (5%)
Query: 129 KGTGMGTAKYYM-LKRRQIKIETEAWEQAAKEY---QDLLADMCEQKLAPNLPYVKSLFL 184
+G + T + + L RQ +E +++ A + Y ++ LA + + + +++ +
Sbjct: 344 RGLAVNTGRDGLPLSARQRLLEESSYDAARQLYIHSREQLAQIGKDEGGLQSNWIQQIMF 403
Query: 185 GW----FEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTN 237
W + L D A + ++ P+ LP D +A+IT+ ++ G
Sbjct: 404 DWHKKLVKTLEDIAAGKRKDIDSGFRDRELEPFLQLLPVDKLALITIVEVMRMCGSGTFA 463
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK 297
A ++ + +G A+ENE ++ S K + + +S N P+ + + +
Sbjct: 464 ADGMKTTRVVLNVGRAVENEHHAEALRDSLSTKKLQEELAKVESRGTIN-PDGTVTPRRQ 522
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD--Q 355
+ ++ ++ G H + W Q +VG L+ LME A ++ + +
Sbjct: 523 TESLGILWRRELAKREEDGDSTWHPN---WTQTIRARVGSVLVSALMEIAEVERTIKHPK 579
Query: 356 LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLV 413
G+ + +PAF H + ++G + G+I+ +P V + L+K + + ++PMLV
Sbjct: 580 TGEQVSEKQPAFSHAY-----QYMRGTKLGIIKLNPAVSERLDKDPLDITLHPRFLPMLV 634
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVN 472
P W +N G + + +MRT + +Q + ++ + L+ +F LDTLG+ W++N
Sbjct: 635 KPKPWLTWNSGAYLLHQTPMMRTKESEEQVQYLQQASDNHTLDIIFSGLDTLGAVPWKIN 694
Query: 473 KRILGVIDRMWASGGCLAGL---VDQEDVPLPEKPN--TDDETEIKKWKWKVKTAKKQNS 527
+++ + ++W SG A + + ++P E P D ++ +V+ +Q
Sbjct: 695 RKVFDTVVQVWNSGDAFADIPAAAQKLEIPTLEIPKGVMSDPRARDNYRRRVRELMQQKR 754
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
HS RCD+ KL +AR E FY+PHNLDFRGRAYP+ P L+H+G D+ RG+L F E
Sbjct: 755 AAHSMRCDLNYKLEIARAFLGET-FYFPHNLDFRGRAYPIPPNLSHIGDDMSRGLLLFAE 813
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
PLG+ GL WLKIH++NL G DK S++ R AFT HL+D+FDSAD PLEGR+WW A
Sbjct: 814 SKPLGERGLRWLKIHVSNLM--GFDKASFDEREAFTMEHLEDVFDSADNPLEGRKWWTKA 871
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+DP+QCLATCI L+ ALRS P +P+H
Sbjct: 872 DDPWQCLATCIELTNALRSEDPTKYECGLPIH 903
>gi|443897435|dbj|GAC74776.1| mitochondrial/chloroplast DNA-directed RNA polymerase RPO41
[Pseudozyma antarctica T-34]
Length = 1509
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 192/530 (36%), Positives = 280/530 (52%), Gaps = 72/530 (13%)
Query: 186 WFEPLRDAIAKDQATAQDKWK---HMTYA---------PYFNNLPADMMAVITMHKLVGL 233
W+ L+ A+ KD K H + A P+ LP +A+IT+ +L +
Sbjct: 556 WYNKLQTALNKDLDRLDSDLKNDVHTSKAMLPIEQQMLPFLRLLPVSKLALITVLEL--M 613
Query: 234 LMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP- 288
M+ G V + +A Q+G AIE E SE + +P
Sbjct: 614 RMSGNGGVSDGMKTTRALLQVGRAIETEYH---------------------SEVIRKNPK 652
Query: 289 --EKLIKEQEKLKKR------VTSLIKK-QKLQQVRGIVKGHVDSKP-WGQDALVKVGCR 338
+ Q LKKR IK+ QK Q+ +G++ S P W Q +VG
Sbjct: 653 IFQNAQAAQAALKKRGLVDFAARREIKEWQKQQEEQGVIS----SIPKWTQITRARVGSY 708
Query: 339 LIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL 397
L+Q LM+ A + + D+ G + +PAF T + L G++ GVI+ + +V K L
Sbjct: 709 LVQHLMQVATVNRKATDRDGILWEEDQPAFYSTY-----QYLGGKKLGVIKLNEVVAKRL 763
Query: 398 EKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQL 454
+K + P ++PMLVPP W ++ GG++ + MR + +Q ++ + L
Sbjct: 764 DKDSISETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRAASDNGDL 823
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIK 513
+ V ALD LG+T W++NK I V+ +W SG +A + E + P P KP+ D +IK
Sbjct: 824 DTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPMEMETPEPVKPDNYDH-DIK 882
Query: 514 K---WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
+ ++K +Q S HSQRCD+ KL +AR E FY+PHN+DFRGRAYPM P+
Sbjct: 883 ARSVYLQRLKQWNQQRSSNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGRAYPMPPH 941
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G+DLCRG+L F + PLGKAGL WL+IH++N++ G DK S+ R F +H DI
Sbjct: 942 LNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFAIDHEADI 999
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP-SPESTISHIPVH 679
DS +RPL+G RWWL A+DP+QCLA C+ L AL P PE+ S +PVH
Sbjct: 1000 RDSVERPLDGNRWWLKADDPWQCLAACMELRAALDHPEGPEAYESCLPVH 1049
>gi|71013602|ref|XP_758640.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
gi|46098298|gb|EAK83531.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
Length = 1566
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/488 (36%), Positives = 274/488 (56%), Gaps = 52/488 (10%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ LPA +A+IT+ +L + M+ G+V + +A Q+G AIE
Sbjct: 637 PFLRLLPASKLALITILEL--MRMSGNGDVSDGMKTTRAVLQVGRAIE------------ 682
Query: 268 KKKNATDNNLEGDSEPLTNDP---EKLIKEQEKLKKR-VTSLIKKQKLQ--QVRGIVKGH 321
+E S+ + +P + Q L+KR + L +++++ Q + +G
Sbjct: 683 ---------MEYHSDIVRKNPKIFQNAYTAQTTLRKRGLIDLAARREIKAWQKQQEDEGV 733
Query: 322 VDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
+ S P W Q +VG L+Q LM A + + D+ G + +PAF T + L
Sbjct: 734 LSSIPSWTQTVRARVGSYLVQHLMNVATVNRKATDRDGVLWEEDQPAFYSTY-----QYL 788
Query: 380 KGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G++ GVI+ + ++ + L+K + + P ++PMLVPP W ++ GG++ + MR
Sbjct: 789 GGKKLGVIKLNEVIARRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYK 848
Query: 438 GARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
+ +Q +++ + L+ V ALD LG+T W++NK I V+ +W SG +A + E
Sbjct: 849 DSAEQGSYLRVASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPVE 908
Query: 497 -DVPLPEKPNTDDETEIKK---WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
+VP P+KP+ D +IK + ++K +Q + HSQRCD+ KL +AR E F
Sbjct: 909 MEVPEPQKPDNYDH-DIKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYLGER-F 966
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+PHN+DFRGRAYPM P+LNH+G+DLCRG+L F + PLGKAGL WL+IH++N++ G D
Sbjct: 967 YFPHNMDFRGRAYPMPPHLNHIGNDLCRGLLLFADSKPLGKAGLRWLRIHISNVF--GYD 1024
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL-RSPSPES 671
K S+ R F +H DI DS +RPL+G WWL A+DP+QCLA C+ L AL + PE+
Sbjct: 1025 KASFGEREQFAIDHEADIRDSVERPLDGNCWWLKADDPWQCLAACMELKAALEHAEGPEA 1084
Query: 672 TISHIPVH 679
S +PVH
Sbjct: 1085 YESCLPVH 1092
>gi|343427710|emb|CBQ71237.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 1551
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 272/487 (55%), Gaps = 50/487 (10%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ + L +A+IT+ +L + M+ G V + +A +G AIE
Sbjct: 625 PFLHLLSPAKLALITILEL--MRMSGNGGVSDGMKTTRALLAVGRAIE------------ 670
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKE---QEKLKKR-VTSLIKKQKLQ--QVRGIVKGH 321
+E SE + +P+ Q L+KR + L +++++ Q++ +G
Sbjct: 671 ---------MEYHSEVVRKNPKIFSNAHAAQATLRKRGLIDLAARREIKAWQMQQEEEGV 721
Query: 322 VDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
+ S P W Q +VG L+Q LM A + + D+ G + +PAF T + L
Sbjct: 722 LSSIPRWTQPVRARVGSYLVQHLMHVATVNRKATDRDGVLWEEDQPAFYSTY-----QYL 776
Query: 380 KGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G++ GVI+ + ++ K L+K + + P ++PMLVPP W ++ GG++ + MR
Sbjct: 777 GGKKLGVIKLNEVIAKRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFK 836
Query: 438 GARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
+ +Q ++ + L+ V ALD LG+T W++NK I V+ +W SG LA + E
Sbjct: 837 DSAEQGSYLRAASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGEDLADMPPIE 896
Query: 497 -DVPLPEKP-NTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
D P P+KP N D + + + + ++K +Q + HSQRCD+ KL +AR E FY
Sbjct: 897 MDAPEPQKPDNYDHDMKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYVGER-FY 955
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+PHN+DFRGRAYPM P+LNH+G+DLCRG+L F + PLGKAGL WL+IH++N++ G DK
Sbjct: 956 FPHNMDFRGRAYPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDK 1013
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP-SPEST 672
S+ R F +H DI DS +RPL+G RWWL A+DP+QCLA+C+ L AL P PE+
Sbjct: 1014 ASFAEREQFAIDHEADIRDSVERPLDGNRWWLKADDPWQCLASCMELKAALEHPEGPEAY 1073
Query: 673 ISHIPVH 679
S +PVH
Sbjct: 1074 ESSLPVH 1080
>gi|347838129|emb|CCD52701.1| similar to mitochondrial DNA-directed RNA polymerase [Botryotinia
fuckeliana]
Length = 1399
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 182/604 (30%), Positives = 304/604 (50%), Gaps = 50/604 (8%)
Query: 105 IDQFNEKGV---SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQ 161
+ Q ++KG+ S+ + S+ P G M + Q ++E +A + A ++
Sbjct: 318 VRQTDQKGLGLKSLRKTLSLFSSLPSA-GYDMSKMSEEQQRAIQAQLEEDAVQAAIDRWR 376
Query: 162 DLLADMCEQKLAPNLPYVKSLFLG-----WFEPLRDAIAKD----------QATAQDKWK 206
D ++ L+ +L +S LG W L D + ++ Q + +
Sbjct: 377 DESVNLTRLGLSTSL---QSKSLGARMWKWHVALTDTLKEELKAIDEAEMKQHRSTEDIS 433
Query: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFF 264
Y P+ LPA+ +A +T+ + L ++ + + + + QI +++E+E+ ++
Sbjct: 434 RCEYGPFLRYLPAEKLAALTIIAHMHALSSSGIDKGLTLSFSILQIAKSVEDESIFETIQ 493
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
++ K + +D+ + L +++K + +T V + +
Sbjct: 494 QNMAKPSWSDS-VADRVRTL-----RILKAKAHGNSELTDNTNSTSFSP-DAFVSSQIRA 546
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQL----GDSPPDIRPAFVHTLKSFTKEALK 380
W KVG L++ L++ A + PV + ++ ++PAF H ++
Sbjct: 547 HEWSVGIKAKVGSFLLESLLKVAKV--PVTMVHPETNETVTQMQPAFSHA-----QQYRM 599
Query: 381 GRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG- 438
GR+ GVI + ++ + L++ H ++ ++PMLV P W G++ GG P VMR
Sbjct: 600 GRKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPEPWTGFSSGGFLKHPGRVMRVKNG 659
Query: 439 -ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQE 496
A Q+ R L VF+ L+ LG WR+N+ + ++ W SG +A L D+
Sbjct: 660 DADQRNYADAAIDRGNLSTVFKGLNILGEQSWRINQPVFDIMLEAWNSGDAIANLAPDKP 719
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+ P +P T D E ++W VK + S HSQRC +L +AR ++D+ FY+P
Sbjct: 720 KLDYPPEPETSSDPLERRRWVTAVKKVENSKSSFHSQRCFQNFQLEIARALRDKT-FYFP 778
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PYLNH+G+D CRG++ F G LG +GL WLK+HLAN+Y G DK S
Sbjct: 779 HNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGKALGNSGLRWLKVHLANVY--GFDKAS 836
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R F ++D+I+DSA PL G+RWWL AEDP+QCLA C+ AL S P S +S+
Sbjct: 837 LQEREEFASKNIDEIYDSATNPLGGKRWWLQAEDPWQCLAACMEFKNALESGDPASFVSY 896
Query: 676 IPVH 679
+PVH
Sbjct: 897 LPVH 900
>gi|119191788|ref|XP_001246500.1| hypothetical protein CIMG_00271 [Coccidioides immitis RS]
Length = 1363
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 253/508 (49%), Gaps = 40/508 (7%)
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEV 241
G + + A K + T++D YAP+ N++ D +A IT+ +G N G +
Sbjct: 397 GEIQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-I 454
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R+ + +G A++ E ++ K D+ G L D LI K
Sbjct: 455 RLTRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGV 508
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
SLI +K ++ +K W K+G L +L + + V Q
Sbjct: 509 RESLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETG 557
Query: 362 DI----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPL 416
+I +PAF H + KG G + D +V + + ++ ++PM+ PP
Sbjct: 558 EITFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQ 612
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQ---RETIKMTP-RSQLEPVFQALDTLGSTKWRVN 472
W Y GG P+ +MR Q R+ ++ R L+ +F L+ LG T WR+N
Sbjct: 613 PWTSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRIN 672
Query: 473 KRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
K + V+ W SG LA + + ++P P KP TDD +++ + + S HS
Sbjct: 673 KPVFDVMLEAWNSGDELADIAPVDPNLPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHS 732
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRC L+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F +G L
Sbjct: 733 QRCFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGREL 791
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL WLKIH+AN+Y G DK S++ R F +HLDD+ DSA++ L GRRWWL A DPF
Sbjct: 792 GERGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPF 849
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CI L AL P P ISH+P+H
Sbjct: 850 QCLAACIELKNALACPDPTKYISHLPIH 877
>gi|367034009|ref|XP_003666287.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
gi|347013559|gb|AEO61042.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
Length = 1402
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 194/617 (31%), Positives = 316/617 (51%), Gaps = 63/617 (10%)
Query: 96 SGSEEVQELIDQFNEKGV---SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQI--KIET 150
SG+ EV+E +KG+ S+ + S+L + P+ G+ A + +RR++ ++E
Sbjct: 317 SGTPEVRET----PQKGMGLKSLKTALSLLSELPE----GLDIASLPLSQRREVQARLER 368
Query: 151 EAWEQAAKEYQDLLADMCEQKLAPNL--PYVKSLFLGWFEPLRDAIAKDQAT-------- 200
+ + A +++ + L L P + S W + L + ++QA
Sbjct: 369 DCVDAAIARWREENEQLMSMGLNTQLSTPSLNSKLYDWHQALEARLIQEQAKVEASLSAP 428
Query: 201 --AQDKWKHMTYAPYFNNLPAD-MMAVITMHKLVGLLMTNAGE-VRVVQAACQIGEAIEN 256
+++ + Y P+ PA+ + AV + L L M A + + V Q+ + E
Sbjct: 429 RKSREDMERCVYGPHLLQSPANRLAAVAILSALSSLAMHGADKGIPVSNMVQQLAKIAEE 488
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV-TSLIKKQKLQQVR 315
+ R Q+ K+ K S+P +K ++ +L T+ K
Sbjct: 489 DIRAQAIAKNLPK-----------SKPRK---QKSARQLMRLHDAAPTATTKSSPTATAS 534
Query: 316 GIVKGHVDSKP------WGQDALVKVGCRLIQLLMETAYI--QPPVDQLGDSPPDIRPAF 367
+ +S+P W K G ++ LM+TA I + + + ++PAF
Sbjct: 535 PASQPATNSEPSEFASRWPIAIKAKFGAVILGALMDTAKIVVEREHPETKEKVTQVQPAF 594
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGH 426
HT+ + KGRR GVI+ + + + +++ R + ++PM+V P W +++GG
Sbjct: 595 THTV-----QLKKGRRVGVIQPNRSLIELMKREPRGEALARHLPMVVEPEPWSKFDKGGF 649
Query: 427 FFLPSYVMR--THGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
PS ++R H Q+ R +E + + LD LG T W++N+ + V+ W
Sbjct: 650 ITSPSPLVRLKNHEKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINRPVFDVMLEAWN 709
Query: 485 SGGCLAGLVDQE-DVPLPEKPN-TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
+G A L + +P+P +P+ TDD + + W VK A+ + S HS RC + +L +
Sbjct: 710 TGEEFANLPALDPKIPIPPEPDSTDDPMKRRLWLRAVKAAENEKSGLHSVRCFMNFQLEI 769
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
AR +D+ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L F +G PLGK+GL WLK+H
Sbjct: 770 ARAFRDQT-FYFPHNIDFRGRAYPIPTYLNHMGADNMRGLLLFAKGRPLGKSGLAWLKVH 828
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
L+N+Y G DK S + R F + +L++IFDSAD PL G+RWWL AEDP+QCLATC L
Sbjct: 829 LSNVY--GFDKASLKEREEFADRNLENIFDSADNPLTGKRWWLQAEDPWQCLATCFELKA 886
Query: 663 ALRSPSPESTISHIPVH 679
AL SP P + +SH+PVH
Sbjct: 887 ALSSPDPTAYVSHLPVH 903
>gi|392864271|gb|EAS34905.2| mitochondrial DNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1385
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 253/508 (49%), Gaps = 40/508 (7%)
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEV 241
G + + A K + T++D YAP+ N++ D +A IT+ +G N G +
Sbjct: 419 GEIQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-I 476
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R+ + +G A++ E ++ K D+ G L D LI K
Sbjct: 477 RLTRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGV 530
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
SLI +K ++ +K W K+G L +L + + V Q
Sbjct: 531 RESLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETG 579
Query: 362 DI----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPL 416
+I +PAF H + KG G + D +V + + ++ ++PM+ PP
Sbjct: 580 EITFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQ 634
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQ---RETIKMTP-RSQLEPVFQALDTLGSTKWRVN 472
W Y GG P+ +MR Q R+ ++ R L+ +F L+ LG T WR+N
Sbjct: 635 PWTSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRIN 694
Query: 473 KRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
K + V+ W SG LA + + ++P P KP TDD +++ + + S HS
Sbjct: 695 KPVFDVMLEAWNSGDELADIAPVDPNLPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHS 754
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRC L+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F +G L
Sbjct: 755 QRCFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGREL 813
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL WLKIH+AN+Y G DK S++ R F +HLDD+ DSA++ L GRRWWL A DPF
Sbjct: 814 GERGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPF 871
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CI L AL P P ISH+P+H
Sbjct: 872 QCLAACIELKNALACPDPTKYISHLPIH 899
>gi|384499375|gb|EIE89866.1| hypothetical protein RO3G_14577 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 186/558 (33%), Positives = 277/558 (49%), Gaps = 55/558 (9%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKL-------APNLPYVKSLFLGWFEPLR----DA 193
Q+ +E + +E A + L EQ + A +L +K + W + L +
Sbjct: 270 QLSLERQGYEMALQR----LLHTKEQSIERGDTLNAMHLTPLKRIMWTWHQNLTLLIDEE 325
Query: 194 IAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA-GE-VRVVQAACQIG 251
I + + A + Y P+ LP D ++++T+ +L+ L ++ G+ ++ +A +G
Sbjct: 326 IKRCEVAAPRDHERRAYGPFLKVLPKDTLSIVTILELLRLHNSSGIGDGMKTARAILDVG 385
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
+A+E E K K + N L R+ ++ +
Sbjct: 386 KAVEMEHNAVQMKKHAKSQQNIQNVLSSG--------------------RLFNMAVNKAH 425
Query: 312 QQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQPPV--DQLGDSPPDIRPAFV 368
+++ + + P W KVG L LL+E A I P + G + PAF
Sbjct: 426 KKIVNNDENSAEWNPVWPTTTRAKVGSVLTSLLLEAAKIPVPSRDPETGKKIVENIPAFF 485
Query: 369 HTLKSFTKEALKGRRYGVIE-CDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGH 426
HT + + G+R G+I+ D L + R + P +PMLVPP W YN GG+
Sbjct: 486 HTY-----QYVLGKRVGIIKFADQLTEMLSREPIRDTLHPRLLPMLVPPRPWLSYNSGGY 540
Query: 427 FFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
S MR + +Q + K + R L+ V LD LGST+W+VNK + +I W
Sbjct: 541 LQTKSVCMRIKDSAEQLIYLHKASERDLLQDVLAGLDVLGSTRWKVNKNVFKIILEAWNK 600
Query: 486 GGCLAGLVDQED--VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK--HSQRCDIELKLS 541
G +A + + PLP KP K+ W + + Q +EK HS RCD+ K+
Sbjct: 601 GEAIADIPPAVNGPTPLPPKPENYHTDPKAKFNWVNEVKQIQTTEKNNHSLRCDVNYKVE 660
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
AR + Y+PHN+DFRGRAYPM P LNHLG+DLCRG+L FEE PLG+ G WLKI
Sbjct: 661 TARAFLNLP-MYFPHNMDFRGRAYPMPPTLNHLGNDLCRGLLHFEEAKPLGEKGWRWLKI 719
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
HLANLY G DK S+ R FT +++D+I D+ D PL G++WWL A+ P+QCLA C ++
Sbjct: 720 HLANLY--GYDKHSFTEREQFTLDNIDNIIDAVDNPLTGKQWWLKADSPWQCLAACFEVA 777
Query: 662 EALRSPSPESTISHIPVH 679
EA+RS PE S +PVH
Sbjct: 778 EAVRSGKPEEFKSRLPVH 795
>gi|303313347|ref|XP_003066685.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106347|gb|EER24540.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1385
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 253/508 (49%), Gaps = 40/508 (7%)
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEV 241
G + + A K + T++D YAP+ N++ D +A IT+ +G N G +
Sbjct: 419 GEIQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-I 476
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R+ + +G A++ E ++ K D+ G L D LI K
Sbjct: 477 RLTRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGV 530
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
SLI +K ++ +K W K+G L +L + + V Q
Sbjct: 531 RESLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETG 579
Query: 362 DI----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPL 416
+I +PAF H + KG G + D +V + + ++ ++PM+ PP
Sbjct: 580 EITFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQ 634
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQ---RETIKMTP-RSQLEPVFQALDTLGSTKWRVN 472
W Y GG P+ +MR Q R+ ++ R L+ +F L+ LG T WR+N
Sbjct: 635 PWTSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRIN 694
Query: 473 KRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
K + V+ W SG LA + + ++P P KP TDD +++ + + S HS
Sbjct: 695 KPVFDVMLEAWNSGDELADIAPVDPNLPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHS 754
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRC L+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F +G L
Sbjct: 755 QRCFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGREL 813
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL WLKIH+AN+Y G DK S++ R F +HLDD+ DSA++ L GRRWWL A DPF
Sbjct: 814 GERGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPF 871
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CI L AL P P ISH+P+H
Sbjct: 872 QCLAACIELKNALACPDPTKYISHLPIH 899
>gi|320036385|gb|EFW18324.1| DNA-directed RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 1385
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 253/508 (49%), Gaps = 40/508 (7%)
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEV 241
G + + A K + T++D YAP+ N++ D +A IT+ +G N G +
Sbjct: 419 GEIQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-I 476
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R+ + +G A++ E ++ K D+ G L D LI K
Sbjct: 477 RLTRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGV 530
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
SLI +K ++ +K W K+G L +L + + V Q
Sbjct: 531 RESLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETG 579
Query: 362 DI----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPL 416
+I +PAF H + KG G + D +V + + ++ ++PM+ PP
Sbjct: 580 EITFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQ 634
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQ---RETIKMTP-RSQLEPVFQALDTLGSTKWRVN 472
W Y GG P+ +MR Q R+ ++ R L+ +F L+ LG T WR+N
Sbjct: 635 PWTSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRIN 694
Query: 473 KRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
K + V+ W SG LA + + ++P P KP TDD +++ + + S HS
Sbjct: 695 KPVFDVMLEAWNSGDELADIAPVDPNLPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHS 754
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRC L+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F +G L
Sbjct: 755 QRCFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGREL 813
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL WLKIH+AN+Y G DK S++ R F +HLDD+ DSA++ L GRRWWL A DPF
Sbjct: 814 GERGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPF 871
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CI L AL P P ISH+P+H
Sbjct: 872 QCLAACIELKNALACPDPTKYISHLPIH 899
>gi|392575571|gb|EIW68704.1| hypothetical protein TREMEDRAFT_69156 [Tremella mesenterica DSM
1558]
Length = 1229
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 169/483 (34%), Positives = 261/483 (54%), Gaps = 30/483 (6%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTK 268
Y LP + +A+IT+ ++ + M+ +G + + ++ +G+A+E E R ++ K
Sbjct: 293 YLTVLPPEKLALITILEV--MRMSGSGGIVDGMKALRGIMAVGKAVETEYRAETI----K 346
Query: 269 KKNATDNNLEGDS-EPLTNDPEK-LIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
D+ L + +P T P + LI + + K Q ++ V +
Sbjct: 347 SVGGVDSPLWLKTIDPQTQKPSRQLISQVWNQVGQSRHRPNKSTSQDLKDTGLEAVWTPA 406
Query: 327 WGQDALVKVGCRLIQLLMETA-YIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W +G L+ L+ TA ++ D G+ + +PAF H E L G++
Sbjct: 407 WSPLVHASLGGFLVDALLSTAKVVREATDPDTGEKIVEEQPAFAHEY-----EYLYGKKL 461
Query: 385 GVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQ 441
GVI+ +P+V L + H++I ++PMLVPP W + GG+ VMR A Q
Sbjct: 462 GVIKLNPVVAARLARDSLHVVIHPRHLPMLVPPKPWTSQDDGGYLVHRVPVMRYKESAEQ 521
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-VDQE---- 496
Q K LEPVF LD L T W +N+++ V+ W SG +A L QE
Sbjct: 522 QIYLRKAFEAGHLEPVFHGLDVLSGTPWTINRKVFDVVLSAWNSGDAIADLPASQEKAQY 581
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
D P+P P+ + + + ++++ Q + H++RC L +AR ++ FY PH
Sbjct: 582 DFPVPPDPDNSEPQDRTSYVVRIRSVLAQQRKDHAERCKFNYNLEIARSYLNDT-FYLPH 640
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ P+L+ +G DLCRG+L+F E LG+AGL WL+IHLAN+Y G DK S+
Sbjct: 641 NMDFRGRAYPIPPHLSPVGDDLCRGLLQFGEKRTLGRAGLKWLQIHLANVY--GYDKASF 698
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
E R F +H +IF+SAD PL+G+RWWL AEDP+QCLA+C +L+ ALRS +PE+ S +
Sbjct: 699 EERAQFAVDHEKEIFNSADNPLDGQRWWLQAEDPWQCLASCFDLAAALRSENPEAYESAL 758
Query: 677 PVH 679
P+H
Sbjct: 759 PIH 761
>gi|154290650|ref|XP_001545917.1| hypothetical protein BC1G_15645 [Botryotinia fuckeliana B05.10]
Length = 1234
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 182/604 (30%), Positives = 303/604 (50%), Gaps = 50/604 (8%)
Query: 105 IDQFNEKGV---SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQ 161
+ Q ++KG+ S+ + S+ P G M + Q ++E +A + A ++
Sbjct: 153 VRQTDQKGLGLKSLRKTLSLFSSLPSA-GYDMSKMSEEQQRAIQAQLEEDAVQAAIDRWR 211
Query: 162 DLLADMCEQKLAPNLPYVKSLFLG-----WFEPLRDAIAKD----------QATAQDKWK 206
D ++ L+ +L +S LG W L D + ++ Q + +
Sbjct: 212 DESVNLTRLGLSTSL---QSKSLGARMWKWHVALTDTLKEELKAIDEAEMKQHRSTEDIS 268
Query: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFF 264
Y P+ LPA+ +A +T+ + L ++ + + + + QI +++E+E+ ++
Sbjct: 269 RCEYGPFLRYLPAEKLAALTIIAHMHALSSSGIDKGLTLSFSILQIAKSVEDESIFETIQ 328
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
++ K + +D+ + L +++K + +T V + +
Sbjct: 329 QNMAKPSWSDS-VADRVRTL-----RILKAKAHGNSELTDNTNSTSFSP-DAFVSSQIRA 381
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQL----GDSPPDIRPAFVHTLKSFTKEALK 380
W KVG L++ L++ A + PV + ++ ++PAF H ++
Sbjct: 382 HEWSVGIKAKVGSFLLESLLKVAKV--PVTMVHPETNETVTQMQPAFSHA-----QQYRM 434
Query: 381 GRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG- 438
GR+ GVI + ++ + L++ H ++ ++PMLV P W G++ GG P VMR
Sbjct: 435 GRKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPEPWTGFSSGGFLKHPGRVMRVKNG 494
Query: 439 -ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQE 496
A Q+ R L VF+ L+ LG WR+N+ + ++ W SG +A L D+
Sbjct: 495 DADQRNYADAAIDRGNLSTVFKGLNILGEQSWRINQPVFDIMLEAWNSGDAIANLAPDKP 554
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+ P +P T D E +W VK + S HSQRC +L +AR ++D+ FY+P
Sbjct: 555 KLDYPPEPETSSDPLERPRWVTAVKKVENSKSSFHSQRCFQNFQLEIARALRDKT-FYFP 613
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PYLNH+G+D CRG++ F G LG +GL WLK+HLAN+Y G DK S
Sbjct: 614 HNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGKALGNSGLRWLKVHLANVY--GFDKAS 671
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R F ++D+I+DSA PL G+RWWL AEDP+QCLA C+ AL S P S +S+
Sbjct: 672 LQEREEFASKNIDEIYDSATNPLGGKRWWLQAEDPWQCLAACMEFKNALESGDPASFVSY 731
Query: 676 IPVH 679
+PVH
Sbjct: 732 LPVH 735
>gi|363748672|ref|XP_003644554.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888186|gb|AET37737.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1298
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 172/497 (34%), Positives = 266/497 (53%), Gaps = 53/497 (10%)
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIE 255
Q + +DK + M YAPY L + M+VIT+ +L+ L T +R +A IG+A+E
Sbjct: 439 QHSPKDKAR-MEYAPYLTLLNPEKMSVITILELLSLNSTGGVSEGMRTARAVMAIGKAVE 497
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E R ++ KS + + D K E +KL + + + K++Q +
Sbjct: 498 MEFRSEALLKSENQ--------------MFKDVSKKSPEFKKLLQMAKTTFRNTKIEQSK 543
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIRPAFV 368
W K+G LI +L+ A ++ PV + G++P A
Sbjct: 544 VF---------WPYQIRAKIGSLLISMLINVARVEVTGIDPVTKEAVYGEAP-----AIC 589
Query: 369 HTLKSFTKEALKGRRYGVIECDPLV--RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGH 426
HT + T G + GV++ + + G E+ + ++PMLV P W +N GG+
Sbjct: 590 HTFQYRT-----GSKIGVLKLHRSLTYQLGGERLNASVQPQHLPMLVKPRPWTSWNSGGY 644
Query: 427 FFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
++ S ++R+ + +Q IK +T + + ++Q L+ LG T W VNK + ++ ++W S
Sbjct: 645 YYSQSTLIRSKDSPEQLAYIKAVTGKGAVNNIYQGLNVLGDTAWTVNKPLFTILSKIWNS 704
Query: 486 GGCLAGLVDQED---VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
G + QED +P P+ P D E+K+W+ + + + RCD KL +
Sbjct: 705 GEEYLDIPPQEDDCQLP-PKPPRESDPLELKRWRNDCRFKNIEYRGNRAMRCDSNYKLEI 763
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
AR E+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ R +L F +G LG+ GL+WLK+H
Sbjct: 764 ARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRALLIFWQGKKLGEDGLNWLKVH 822
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
LANLY G+DK +E R+ FTE HL+DI DSA+ PL G WW A+ P+QCLATC+ L +
Sbjct: 823 LANLY--GMDKKPFEDRIKFTEEHLEDIKDSAENPLHGNGWWKKADKPWQCLATCMELRD 880
Query: 663 ALRSPSPESTISHIPVH 679
A + +PE ISH PVH
Sbjct: 881 AYKLENPEDFISHQPVH 897
>gi|393232267|gb|EJD39851.1| DNA/RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1218
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 221/366 (60%), Gaps = 27/366 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W Q VK+G L+ LM A I+ PV G+ + + AF HT E +G+
Sbjct: 425 WSQITRVKLGAFLVDQLMAVAKIERTRTHPVT--GEKLTEEQAAFTHTY-----EYQRGQ 477
Query: 383 RYGVIECDPLVRKGL-EKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
+ GVI+ +PLV + L E R ++ P ++PM+V P W ++ GG+ F + VMR ++
Sbjct: 478 KLGVIKLNPLVTECLAEAPVRDLVHPRHLPMVVKPKPWIDHDNGGYLFSRASVMRIKDSQ 537
Query: 441 QQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DV 498
+Q ++ + +E V+ LD LGST W +N+ + V+ +W SG L + + +
Sbjct: 538 EQLTYLRQASVLGNMELVYSGLDVLGSTPWHINRGVFDVVLEVWNSGQGLGSIPPAKLEE 597
Query: 499 PLPEKPNTDDETEIKK-----WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
P P+KP +DET+++ K K+ T K N+ HS+RC + KL +AR E Y
Sbjct: 598 PEPDKP--EDETDMQAKVAYLQKLKIWTTNKGNN--HSERCSVNYKLEIARAFLGET-LY 652
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+PHN+DFRGRAYP+ P+LNH+G DL R +L+F E PLG+ G+ WLKIHL+NLY G DK
Sbjct: 653 FPHNIDFRGRAYPIPPHLNHMGDDLSRALLQFAESRPLGERGVRWLKIHLSNLY--GFDK 710
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S++ RVAFTE HLD++FDSAD PL G +WW AED +QCLA C L+ ALRSP P +
Sbjct: 711 ASFDDRVAFTEKHLDEVFDSADNPLTGNKWWQKAEDQWQCLAACKELTAALRSPDPYAYE 770
Query: 674 SHIPVH 679
S +PVH
Sbjct: 771 SCLPVH 776
>gi|389743216|gb|EIM84401.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 1355
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 262/480 (54%), Gaps = 35/480 (7%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
P+ + L + +++I + +++ L + +G ++ +A +G A+E+E + +
Sbjct: 392 GPFLSLLKPEKLSLIVILEVMRLQSSGGISGGMKTTRALLSVGMAVEHEYKAEMC----- 446
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
KKN G E T+ + +RVT+ R + G + W
Sbjct: 447 KKNKIQMPTVGTRE--TSGFFSKFSYNDLHARRVTAR---------RYMEDGEEWTSQWT 495
Query: 329 QDALVKVGCRLIQLLMETAYIQ---PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
Q +KVG L+ LME A ++ P G+ + +PAF H+ E ++G + G
Sbjct: 496 QPVRIKVGSFLVDRLMECAMVERTAPDPKNPGNILREEQPAFFHSY-----EYIRGNKLG 550
Query: 386 VIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR 443
V++ + +V++ L + G R + P ++PMLV P W YN GG+ + S VMR +++Q
Sbjct: 551 VLKLNQVVQEKLGRDGVRETLHPRHLPMLVKPKPWLNYNDGGYIYNKSLVMRFKESKEQE 610
Query: 444 ETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLP 501
+K + +E V+ LD LGST W++N+ + V+ +W SG L + + P P
Sbjct: 611 TYLKHASGVGNVELVYAGLDVLGSTPWKINRGVFDVVLEVWNSGKGLCKVPSAAFEEPEP 670
Query: 502 EKP-NTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
E+P N + D+ + +++ + + HS RC + K+ +AR + FY PHNLD
Sbjct: 671 ERPANMEVDQNGRTIYLTRLRAWTQAKANHHSDRCSVNYKIEIARAFIGDT-FYLPHNLD 729
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGRAYP+ P+LNH+G+DL RG+L F E PLG GL WLKIHLANLY G DK +++ R
Sbjct: 730 FRGRAYPLPPHLNHIGNDLSRGLLLFGESKPLGARGLRWLKIHLANLY--GYDKATFDER 787
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
V F LD+I+DSAD PL GRRWW+ A+DP+QCLATC L AL SP PE+ +PVH
Sbjct: 788 VEFVHERLDEIYDSADNPLTGRRWWIQADDPWQCLATCKELKAALTSPEPEAYECSLPVH 847
>gi|440790817|gb|ELR12085.1| DNAdependent RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 965
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 193/578 (33%), Positives = 284/578 (49%), Gaps = 92/578 (15%)
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI------------AK 196
ET++ E+A + Y+ + + + LA L + WFEPL AI A
Sbjct: 134 ETKSVEKAVERYKKISKSLKQLGLAFELLQGNQILGHWFEPLCAAIRAEQNAALLKTSAA 193
Query: 197 DQATAQDKWKHMT-------YAPYFNNLPADMMAVITMHK-LVGLLMTNAGEVRVVQA-A 247
D A + K K T + Y +P + +AVIT+H+ + +L ++ E A
Sbjct: 194 DAAASPTKGKKKTQKAEDRELSAYLVTIPPEKLAVITIHETMCEILKSHHPEGAPFAALV 253
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE--QEKLKKRVTSL 305
+G A+E E E+L KE + +L+ R +
Sbjct: 254 VAVGRAVEYEYNC----------------------------ERLAKEGWKPQLRNRSATP 285
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI------------QPPV 353
K+Q +R + + WG K+G L+Q L+ TA I Q
Sbjct: 286 TKQQICSLIRTQSRAQFEDASWGAALHAKIGSLLVQQLLGTATIARKAEEADVAAAQSSP 345
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEA-------LKGRRYGVIECDPLVRKGLEKTGRH--- 403
+L P RPAFV ++ + A L+G+ G + C V +E
Sbjct: 346 ARLLSGAPRKRPAFVTKEEALLEPAFNHHQAMLRGKLTGFLGCHEQVLALMEHEEVQRGV 405
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
M YMPMLV P W N+GG+ + V+R G+R Q E ++ + ++ V++ L+
Sbjct: 406 MQARYMPMLVEPQPWVAPNQGGYLVARTQVLRAKGSRMQTEVLR---SASMDKVYECLNL 462
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIK-KWKWKVKT 521
L ST WR+N R+ VI W +GG +A L + ++P E P + + E+K K+ + K
Sbjct: 463 LSSTPWRINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKK 522
Query: 522 AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 581
AK N HS RCD VA++ +D FYYPHN+DFRGR YP+ P+LNHLG DLCRG
Sbjct: 523 AKIANYNLHSLRCD------VAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRG 575
Query: 582 VLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
+L F EG PLG+ LK+HLAN++ G DK+++E RV F EN+++ I DSA PL G+
Sbjct: 576 LLTFAEGKPLGE-----LKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQ 628
Query: 642 RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
RWWL A+ P+QCLA I L A S PE+ +S +P+H
Sbjct: 629 RWWLKADKPWQCLAASIELINAYNSGQPETYVSTLPIH 666
>gi|308808155|ref|XP_003081388.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
gi|116059850|emb|CAL55557.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
Length = 973
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 186/602 (30%), Positives = 288/602 (47%), Gaps = 82/602 (13%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
R+Q + E A E+ Y++ + LP V+ L ++ PL DAI ++ +
Sbjct: 79 RKQREAENLACEREVARYKEFARKTFAAGIGAQLPVVQKLLASFYVPLVDAIKEEHEKIK 138
Query: 203 DKWKHM---TYAPYFNNLPADMMAVITMHKLVGLLMTN-----------------AGEVR 242
+ Y Y L + +AV+T+H + LM +G +
Sbjct: 139 SNVPGVDRRVYGHYLALLEPEKLAVLTLHTTLSTLMKGDLRLDVPIFRGDDDTAASGSAK 198
Query: 243 VVQAACQIGEAIENEARI------QSFFKSTKKKNATDNNLEGDS-EPLTNDPEKLIKEQ 295
+ A Q+G ++ E + + K KK+ L D + D E+L+++
Sbjct: 199 FITVAEQVGIVVQAEVNLGRMRAAEKIAKEAYKKSRQQTTLTADGGNAASKDVEELVEQ- 257
Query: 296 EKLKKRVTSLIKKQKLQQVRGIVK---GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
R+ + K+ ++ + K +++ WG++ VKVG L+ LM TA I P
Sbjct: 258 -----RINLTLDTSKMNTIKSVSKHARNALENAEWGREIRVKVGTVLLNALMNTAKIGVP 312
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIP--Y 408
+ G V TL +F + +G YG++ + + + E R ++P +
Sbjct: 313 EENGG----------VLTLPAFYHDYREGG-YGMLHWHDSIYRFINTETMTRAALVPVKH 361
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR----THG-ARQQRETIKMTPRSQ--------LE 455
PM+VPP W YN GG+ + MR G +R Q + ++ R +
Sbjct: 362 FPMIVPPREWVRYNNGGYLRANTLCMRGKYSNEGPSRAQVQALEAKAREAELKNEPVLYQ 421
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD-------- 507
PV AL+ LG T W+VN +L +++ +WA GG +A + + ++ LP P
Sbjct: 422 PVLDALNALGRTPWQVNTDVLPIVEEVWARGGGIAEVPLRAELQLPRWPGGSYALRSDKN 481
Query: 508 ----------DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+ E+ ++ V+ KK N E HSQRCD +KL VAR+MK+E Y+PHN
Sbjct: 482 RFQLLASGLPGKGEVIEFLQSVRKTKKSNMELHSQRCDFLIKLQVAREMKNEPNIYFPHN 541
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
LDFRGRAY MH +LNH+GSDLCRG+L F E PLG+ GL W+ I A L+ G DKL +
Sbjct: 542 LDFRGRAYTMHVHLNHIGSDLCRGLLRFSEKKPLGERGLRWMYIQCATLFGNGADKLPMD 601
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
RV F + ++ + SA PL WW AE+P+QCLATCI L +AL P +S++P
Sbjct: 602 ERVQFIVDQIEQVRASAQDPLAKGAWWQDAEEPWQCLATCIELDKALELEDPTQFLSNLP 661
Query: 678 VH 679
VH
Sbjct: 662 VH 663
>gi|406868664|gb|EKD21701.1| DNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1461
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 192/589 (32%), Positives = 293/589 (49%), Gaps = 71/589 (12%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLG 185
+G + TA M + Q ++E A E A ++D + + L +L KSL
Sbjct: 343 EGIDLSTASEEMKREVQQRLEKNAVESAIDRWRDESIHLSKMGLNTSL-QTKSLGARMWK 401
Query: 186 W---FEP-LRDAIAKDQA----TAQDKWKHM--------TYAPYFNNLPADMMAVITMHK 229
W FE L+D IAK A TA+ K M Y P+ LP D +A +T+
Sbjct: 402 WQTVFEQYLKDEIAKVDAAENITAEKVNKKMLPEDLDRVIYGPFLRLLPPDKLAAVTILS 461
Query: 230 LVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
+ + + + + + A I +++E+E + K++KK ++N D L
Sbjct: 462 AMTTMSSMGLDKGIPLSNAIMAIAKSVEDECAFDTIQKASKKNIWPNSNNRPDIGQL--- 518
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQV-RGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
KR T + L + + ++ + W KVG L+ L+E
Sbjct: 519 ------------KRATRFRTSKPLIDLDQSETAEALEDRQWPLAMRAKVGAFLMSALIEV 566
Query: 347 AYIQPPV----DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR 402
A + PV + G+ ++PAF H + G++ GVI + + L++
Sbjct: 567 AKV--PVALTHPETGEIVTQMQPAFCHA-----HQYKLGKKVGVIMANKSLVATLKREPV 619
Query: 403 H-MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMT-PRSQLEPVFQ 459
H ++ ++PMLV P W +++GG PS +MR G + QR + + + F+
Sbjct: 620 HSLLAKHLPMLVEPEPWSDFSKGGFLAHPSKIMRVKTGDKDQRYYAEAAIGQGDMTLTFK 679
Query: 460 ALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN---------TDDET 510
L+ LG T WR+N+++ V+ W +G +A ++P PE PN + D
Sbjct: 680 GLNVLGKTSWRINQQVFDVMLEAWNAGDAIA------NIP-PETPNLKAPPEPEASQDPL 732
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
E ++W VK + S HSQRC +L +AR +K EE FY+PHN+DFRGRAYP+ PY
Sbjct: 733 ERRQWIRAVKNVENHRSGLHSQRCFQNFQLEIARALKHEE-FYFPHNVDFRGRAYPIPPY 791
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G+D CRG+L F +G LG++GL WLKIH AN++ G DK S R AF H+D +
Sbjct: 792 LNHMGADHCRGLLIFGKGRELGESGLRWLKIHAANVF--GFDKASLSEREAFAMKHMDQM 849
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F++A PL G RWWL AEDP+Q LA C+ L A+ SP P +SH+PVH
Sbjct: 850 FEAAKNPLGGTRWWLNAEDPWQFLAACMELKNAMESPDPTRFVSHLPVH 898
>gi|298708570|emb|CBJ30655.1| mitochondrial DNA-directed RNA polymerase [Ectocarpus siliculosus]
Length = 1167
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 300/610 (49%), Gaps = 110/610 (18%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y L + Q+ E ++ ++A ++Y ++ ++ + ++ L W+ L+++I ++
Sbjct: 281 YSTLYQMQLDREDQSHQEACEKYGKMVKELMTMGKGTQMKPIERLLTTWYPALKESIERE 340
Query: 198 Q----ATAQDKWKHM-----------TYAPYFNNLPADMMAVITMHKLVGLLMTNAGE-V 241
Q A D K TY + L AD AV+ MH++V L++ + + V
Sbjct: 341 QEAVWANVTDDNKGTVKTSGSFGGRGTYGAFLVMLKADKQAVLVMHEVVNLILASGNKGV 400
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
V+A ++ E ++ E + K KK + +
Sbjct: 401 STVRACTRVAELVQAEVNLMRMKKDGKKGQ---------------------------RVQ 433
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA-------------- 347
V+SL +++ + ++ W A VK+G LI+LL+ETA
Sbjct: 434 VSSLRHVREVNKQAQDALDMLEDTHWPIGAQVKLGAALIKLLIETACWTYDKESGVVTAW 493
Query: 348 ------YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR--RYGVIECDP-LVRKGLE 398
D G P + AFVH + +KG+ R G + P + K ++
Sbjct: 494 DKGGAERGGGERDTEGFPMP--KAAFVHDI-------IKGKNSRKGSLTMAPEIFSKMVD 544
Query: 399 KTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
+ + P ++PMLVPPL+W NRGG L + +MRT G Q+ ++ R+ L V
Sbjct: 545 EDISRLATPRFVPMLVPPLDWIKPNRGGFLRLRAQIMRTKGEAAQKHALR---RADLRQV 601
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT----------- 506
++AL+ LG +WR+N +L + + L +D+PLP +P+
Sbjct: 602 YKALNCLGKVRWRINGHVLDTVMVCLRDKIAVGDLPVIKDLPLPPRPDGVTVDRLGRLRA 661
Query: 507 ------DDETEIKK-------WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+DE K+ +K ++ K++N+ HS RCD+++K+ +A++ +D Y
Sbjct: 662 PVQGEHEDEEVFKERRQKHYAYKRLLEKTKQKNANMHSLRCDMKIKVDIAQEFRDHV-IY 720
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+P+N+DFRGR YP+ P LN LGSD RGVL F+E PLG+ GL+WLK+HLANLY G DK
Sbjct: 721 FPYNMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLY--GEDK 778
Query: 614 LSYEGRVAFTENHLD----DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
+S++ RVAF E H+D ++ DSA RPLEG WW A+ P+QCLA C +L+ AL SP P
Sbjct: 779 VSFDDRVAFVEKHMDESWREVRDSALRPLEGECWWKDADSPWQCLAVCADLTAALDSPDP 838
Query: 670 ESTISHIPVH 679
+S +PVH
Sbjct: 839 ARYLSRLPVH 848
>gi|365760960|gb|EHN02641.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1357
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/484 (34%), Positives = 252/484 (52%), Gaps = 46/484 (9%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 500 LDYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 559
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 560 SESQT--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 597
Query: 326 PWGQDALVKVGCRLIQLLMETA--YIQPPVDQLGDSPPDIR-PAFVHTLKSFTKEALKGR 382
W Q+ K+G LI +L+ A ++Q VD + + PAF H + G
Sbjct: 598 -WPQNIRAKIGSVLISMLIHVAKVFVQG-VDPITKAKVHGEAPAFAHGYQYHN-----GS 650
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ GV++ + L G +I +PMLV P W + GG+ + S ++RT
Sbjct: 651 KLGVLKIHKTLIHQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKD 708
Query: 439 ARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QE 496
+ +Q +K + ++ V+ L+ LG T W VN+++ V+ ++W G + QE
Sbjct: 709 SPEQVAYLKAASDNGDIDRVYDGLNVLGDTPWTVNRKVFDVVSQVWNRGESFLDIPSAQE 768
Query: 497 DVPLP-EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
++ LP P D + ++ WK +VKT + S S RCD KL +AR E+ Y+P
Sbjct: 769 EMVLPLAPPRNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFP 827
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYP+ P+ NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G DKL
Sbjct: 828 HNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLR 885
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
E RVAFTE+HL+D+ DSA+ PL G RWW A+ P+Q LATC L+E ++ +PE ISH
Sbjct: 886 LEDRVAFTESHLNDVKDSAENPLSGERWWTTADKPWQALATCFELNEVMKMDNPEEFISH 945
Query: 676 IPVH 679
PVH
Sbjct: 946 QPVH 949
>gi|429243230|ref|NP_594459.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe
972h-]
gi|384872627|sp|O13993.2|RPOM_SCHPO RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|347834189|emb|CAB16197.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe]
Length = 1154
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 186/575 (32%), Positives = 292/575 (50%), Gaps = 59/575 (10%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
RV +G + E E + + K K+ D + + L NDP K +
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKD---KKRLKELFNDPRKFRQA-- 446
Query: 297 KLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 447 ---------VKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTY-----QYSNGRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGST 467
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+A+ +LG
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKV 608
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKK 524
WR+N+R+ V+ R+W SG + +E D+P P N+ + + W + K
Sbjct: 609 SWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMP-PYPKNSINPRDKVIWHTRRKELAA 667
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ +L+H+ +D+CRG+LE
Sbjct: 668 LKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLE 726
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F G PLG GL+WLK+HLANL+ G+ K + R AF ++++ ++FDSADRPL+G +WW
Sbjct: 727 FSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWW 784
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A+DPFQ LA C ++EA+RS ES ISHIP+
Sbjct: 785 SKADDPFQALAACFEIAEAVRSGDHESYISHIPIQ 819
>gi|50292665|ref|XP_448765.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528077|emb|CAG61728.1| unnamed protein product [Candida glabrata]
Length = 1326
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 250/487 (51%), Gaps = 56/487 (11%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPYF + + M VIT+ +L+ L T +R +A + +AIE E R + S
Sbjct: 472 YAPYFTLVNPEKMCVITILELLKLNSTGGVIDGMRTARAVISVSKAIELEFRSEQLLNSE 531
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
+ N + + ++ + E K R+ W
Sbjct: 532 NQTFKDINKKSHEFKRYVQSAKRTFRSMEIEKSRII-----------------------W 568
Query: 328 GQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIRPAFVHTLKSFTKEALK 380
Q K+G LI L+ A + PV + GD+P AF HT
Sbjct: 569 PQTVRAKIGSTLISFLIHVAKVSVEGTDPVTKEKVYGDAP-----AFAHTYVYHN----- 618
Query: 381 GRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
G + G+I+ + L G ++ +PMLV P W+G+ GG+ + S ++R+
Sbjct: 619 GSKLGIIKIHKALINRL--NGERLLASVQPQLLPMLVKPRPWKGWKSGGYLYTQSILVRS 676
Query: 437 HGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC---LAGL 492
+ +Q ++ S ++ ++ L+ LG T W VN+++ V+ ++W G + G+
Sbjct: 677 RDSPEQLAYLQAVSDSGAIDKIYDGLNVLGETAWTVNRKVFDVVSKVWNEGTNFLEIPGI 736
Query: 493 VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
D+ + LP P + D T I++WK K K + S S RCD+ KL +AR E+ F
Sbjct: 737 QDELKL-LPPPPRSSDPTVIREWKLKNKELANKYSSDKSVRCDLNYKLEIARAFLGEK-F 794
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+PHNLDFRGRAYP+ P+ NHLG+DL R +L F +G LG GL+WLK+HL+NL+ GVD
Sbjct: 795 YFPHNLDFRGRAYPLSPHFNHLGNDLSRSLLIFWKGKRLGPDGLNWLKVHLSNLF--GVD 852
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
K+ E RV FTE H++DI DSA+ PL G+ WW A+ P+Q LATC+ L+EAL+ +PE
Sbjct: 853 KVPLEDRVKFTECHIEDIKDSAENPLNGKGWWKTADKPWQALATCMELNEALKLDNPEDY 912
Query: 673 ISHIPVH 679
ISH PVH
Sbjct: 913 ISHQPVH 919
>gi|156049831|ref|XP_001590882.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980]
gi|154693021|gb|EDN92759.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1392
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/511 (33%), Positives = 269/511 (52%), Gaps = 42/511 (8%)
Query: 187 FEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVV 244
+ + +A AK +A D Y P+ LPA+ ++ +T+ + L ++ + + +
Sbjct: 416 LKAIDEAEAKQHRSAAD-ISRCEYGPFLRYLPAEKLSALTIISHMHALSSSGIDKGLTLS 474
Query: 245 QAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND-PEKLIKEQEKLKKRV- 302
A QI +++E+E S F+S ++ A +PL D P + LK R
Sbjct: 475 FAILQIAKSVEDE----SIFESIQQNKA---------KPLFRDSPADRARMLRILKSRAR 521
Query: 303 ----TSLIKKQKLQQV-RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD--- 354
S+ + V + S+ W KVG L++ L++ A + PV
Sbjct: 522 GASGESIDENHSTNHSSEEFVLSQIRSREWSIGIRAKVGSFLLESLLKVAKV--PVTLKH 579
Query: 355 -QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPML 412
+ ++ ++PAF H ++ G++ GVI + ++ + L++ H ++ ++PML
Sbjct: 580 PETNETVTQMQPAFSHG-----QQYRLGKKLGVINANKVIVELLKREPVHSLLAKHLPML 634
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMT-PRSQLEPVFQALDTLGSTKWR 470
V P W G++ GG P VMR +G + QR + L VF+ L+ LG W+
Sbjct: 635 VKPEPWTGFSSGGFLRHPGKVMRVKNGDQDQRNYADAAIDQGNLTTVFRGLNILGEQSWK 694
Query: 471 VNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSE 528
+N+ + V+ W SG +A L D+ + P +P T D E ++W VK + +
Sbjct: 695 INQPVFDVMLDAWNSGDAIANLAPDKPRLEYPPEPETSSDPLERRRWVTAVKKVENAKAG 754
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
HSQRC +L +AR ++D+ FY+PHN+DFRGRAYP+ PYLNH+G+D CRG++ F G
Sbjct: 755 FHSQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMIFGVG 813
Query: 589 HPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAE 648
LG +GL WLK+HLAN+Y G DK S R F H+D+I+DSA PL G RWWL AE
Sbjct: 814 KKLGTSGLKWLKVHLANVY--GFDKASLSEREEFASKHIDEIYDSATNPLGGDRWWLQAE 871
Query: 649 DPFQCLATCINLSEALRSPSPESTISHIPVH 679
DP+QCLA C+ L AL S P S +S++PVH
Sbjct: 872 DPWQCLAACMELKNALESGDPASFVSYLPVH 902
>gi|336379013|gb|EGO20169.1| hypothetical protein SERLADRAFT_363576 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1134
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 216/361 (59%), Gaps = 16/361 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V+VG L+ LM+ A + + +D+ ++ + +PAF H E ++G++
Sbjct: 356 WTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAY-----EYVRGQKL 410
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P+V + K G R + P ++PMLV P W Y++GG+ + S MR +++Q
Sbjct: 411 GVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQ 470
Query: 443 RETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ ++ +E V+ LD LGST W++N+ + V+ +W SG L L D P
Sbjct: 471 QSYLQHASELGNVELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPE 530
Query: 501 PEKPN--TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
PEKP+ + D + ++K + + HS RC + K+ +AR + Y PHNL
Sbjct: 531 PEKPDNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNL 589
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYP+ P+LNH+G DL RG+L F E PLG+ GL WLKIHLANLY G DK +++
Sbjct: 590 DFRGRAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDE 647
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
RV + LD+++DSA++PLEGRRWW A+DP+QCLATC+ L AL S PE+ +S +PV
Sbjct: 648 RVEYVMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPV 707
Query: 679 H 679
H
Sbjct: 708 H 708
>gi|336366344|gb|EGN94691.1| hypothetical protein SERLA73DRAFT_114135 [Serpula lacrymans var.
lacrymans S7.3]
Length = 986
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 216/361 (59%), Gaps = 16/361 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V+VG L+ LM+ A + + +D+ ++ + +PAF H E ++G++
Sbjct: 208 WTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAY-----EYVRGQKL 262
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P+V + K G R + P ++PMLV P W Y++GG+ + S MR +++Q
Sbjct: 263 GVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQ 322
Query: 443 RETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ ++ +E V+ LD LGST W++N+ + V+ +W SG L L D P
Sbjct: 323 QSYLQHASELGNVELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPE 382
Query: 501 PEKPN--TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
PEKP+ + D + ++K + + HS RC + K+ +AR + Y PHNL
Sbjct: 383 PEKPDNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNL 441
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYP+ P+LNH+G DL RG+L F E PLG+ GL WLKIHLANLY G DK +++
Sbjct: 442 DFRGRAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDE 499
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
RV + LD+++DSA++PLEGRRWW A+DP+QCLATC+ L AL S PE+ +S +PV
Sbjct: 500 RVEYVMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPV 559
Query: 679 H 679
H
Sbjct: 560 H 560
>gi|256268895|gb|EEU04244.1| Rpo41p [Saccharomyces cerevisiae JAY291]
Length = 1351
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 176/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D T ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPTILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA+ PL
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|302676686|ref|XP_003028026.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
gi|300101714|gb|EFI93123.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
Length = 1086
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 169/488 (34%), Positives = 262/488 (53%), Gaps = 33/488 (6%)
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEA 258
A K++ +PY + A+ ++++T+ +L+ L T ++ +A +G+A+E E
Sbjct: 157 AHLKYQAEMISPYLALVNAERLSLLTIMELMTLHDTGGVTDGMKTARAVIAVGKAVEAEY 216
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
+ Q + N++ S ++D S ++++++ R +
Sbjct: 217 KAQMCKR---------NHIAVPSSTRSSD-------VSVFSNLGYSNLQERRVAAARLME 260
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQL-GDSPPDIRPAFVHTLKSFTK 376
G + PW +VG LI LM+TA +Q VD+ G + +PAF H+
Sbjct: 261 DGEAWTAPWSVHTRARVGGVLIDCLMDTAKVQRTAVDKNDGKILTEEQPAFYHSY----- 315
Query: 377 EALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G+R GVI+ + V + E T + ++PMLV P W YN GG+ + +Y M
Sbjct: 316 EYVQGQRLGVIKLNQEVAAHMANEWTIDTVHPRHLPMLVKPKPWLNYNDGGYLYHKTYAM 375
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
R G+R+Q+ +K + Q E V+ LD LGST W++N++I V+ +W G L
Sbjct: 376 RFKGSREQQAYLKHASDAGQCELVYAGLDVLGSTPWKINRKIFDVVLEVWNRGDRWGKLP 435
Query: 494 DQE-DVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
D P PE + D D + W +K + HS RC + K+ +AR E
Sbjct: 436 PATFDEPEPEALSPDADSRKRADWSHAMKLYNQAKQSNHSHRCSVNYKIEIARTFLGET- 494
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
FY PHNLDFRGRAYP+ P+LNH+G DL RG+L F E PLG+ G WLKIH+ANLY G
Sbjct: 495 FYQPHNLDFRGRAYPVPPHLNHIGDDLSRGLLMFAEKKPLGERGFRWLKIHIANLY--GF 552
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK S++ RV + E+ L D++DSA+ P+ G+RWWL A+DP+QCLA + L +A+ S +P +
Sbjct: 553 DKASFDERVQWVEDRLADVYDSANNPINGKRWWLEADDPWQCLAASMELRDAIESGNPLA 612
Query: 672 TISHIPVH 679
S +PVH
Sbjct: 613 FESSLPVH 620
>gi|190406539|gb|EDV09806.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae RM11-1a]
Length = 1351
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 176/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D T ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPTILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA+ PL
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|259146153|emb|CAY79412.1| Rpo41p [Saccharomyces cerevisiae EC1118]
Length = 1351
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 176/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D T ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPTILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA+ PL
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|365765907|gb|EHN07411.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1351
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 176/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D T ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPTILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA+ PL
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|410730293|ref|XP_003671326.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
gi|401780144|emb|CCD26083.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Length = 1354
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 182/568 (32%), Positives = 288/568 (50%), Gaps = 79/568 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFL---GWFEPLRDAIAKDQAT 200
RQ +E+ A + A + ++ D E K +L KSL + W+E + + K+
Sbjct: 429 RQRALESRAADAAKERWKH---DFEEAKERGDLSIRKSLNVKLWNWYELMLPILKKEIEK 485
Query: 201 AQDK-------WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
AQ K +K + PY + + M VIT+ +L+ L T +R +A +G
Sbjct: 486 AQLKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILELLKLNSTGGVIEGMRTARAVISVG 545
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
+AIE E R + K + + D K E +K+ +R S + +L
Sbjct: 546 KAIEMEFRSEQLLK--------------NESSIFKDINKKSAEFKKIVQRAKSNFRSTQL 591
Query: 312 QQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIR 364
++ + W Q ++G LI L+ A I P+ + G++P
Sbjct: 592 EKSKIF---------WPQAVRAQIGSILISTLIHVAKIDVEGFDPITKTKVYGEAP---- 638
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRG 420
AF H+ + G + GVI+ + L G ++ +PMLV P W+
Sbjct: 639 -AFAHSY-----QYCNGMKLGVIKIHKALINQL--NGERLVASVQPQLLPMLVEPREWKN 690
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG+F+ S ++R+ + +Q +K ++ + ++ V+ L+ LG T W VNKR+ +I
Sbjct: 691 WRSGGYFYTQSTLIRSKESPEQLAYLKAVSDKEAIDDVYNGLNALGKTAWTVNKRLFEII 750
Query: 480 DRMWASGGCLAGLVDQEDVP--------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
++W G ++ D+P +P P D + +++WK + K + S+ S
Sbjct: 751 SKVWNEG------IEFLDIPQIQYDMQLIPPPPRNSDPSILREWKLQNKEIANKISKNRS 804
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
RCD KL +AR E+ FY+PHNLDFRGRAYP+ P+ NHLG+DL RG+L F +G L
Sbjct: 805 IRCDTNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRGLLIFWKGKKL 863
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G GL WLKIH ANLY G+DK+ + R+ F E+H++D+ D+A+ PL+G+ WW A+ P+
Sbjct: 864 GPDGLSWLKIHCANLY--GMDKIPFTERIQFIEDHIEDVKDTAENPLDGKGWWKKADKPW 921
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
Q LATCI L+EAL+ +PE ISH PVH
Sbjct: 922 QLLATCIELNEALKLDNPEDFISHQPVH 949
>gi|388578906|gb|EIM19238.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 1136
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 187/580 (32%), Positives = 292/580 (50%), Gaps = 55/580 (9%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL---PYVKSLFLGWFEPLRDAIAKDQA- 199
RQ +E A+E A ++ + ++ + ++ L P K ++ W + D AK Q
Sbjct: 145 RQRLLEESAYETAKARFEHEMNELEKAGVSTALSGHPLQKLMWDWWKKVSVDIQAKLQKS 204
Query: 200 --TAQDKWKHMTY----APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIG 251
T K K + P+ + L ++ M++IT+ +++ L T A ++ +A +G
Sbjct: 205 METTNPKTKEEKFMNEITPFLSLLSSEKMSLITVLEILRLSGTGGIAEGMKTTRALLSVG 264
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN-----DPEKLIKEQEKLKKRVTSLI 306
+A+ENE + +K + +E D++ + D K KE + T LI
Sbjct: 265 KAVENEHHAEIL---KQKHGISLKGVEADAKQVKRKLRYFDHRKAEKELDLKSPEFTGLI 321
Query: 307 K-------------KQKLQQVRG---IVKGHVD---SKPWGQDALVKVGCRLIQLLMETA 347
+ R +V+ ++ + W Q +KVG L+ LME A
Sbjct: 322 DDAMGTSEQSPEAHSHDIASERAKARVVEERMNKAWTPNWSQIIRIKVGSFLVDSLMECA 381
Query: 348 YIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT--GRH 403
I + G+ + +PAF S + + ++G++ GVI+ + V L+K G
Sbjct: 382 TITRTAKHPESGEEMTEAQPAF-----SQSYQYVRGKKLGVIKVNTAVADRLDKDPLGST 436
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALD 462
+ ++PMLV P W Y+ GG+ F + MR + +Q+ I K + +EPV LD
Sbjct: 437 IHPRHLPMLVKPKPWLRYDSGGYLFHKNSAMRFKDSNEQQSYILKASSEGTMEPVLAGLD 496
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNT--DDETEIKKWKWKV 519
LG+T W +N+++ V+ W +G LA + P P KP D E + +
Sbjct: 497 VLGATPWNINRKVFNVVKEAWNTGEGLAKIPPATTKTPDPVKPANYAIDPKERSNYLQSM 556
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
K + HS RCD KL +AR +E FY+PH LDFRGRAYP+ P+LNH+G DL
Sbjct: 557 KAVVNERRNNHSIRCDTNYKLEIARAFLNET-FYFPHTLDFRGRAYPIPPHLNHIGDDLS 615
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
RG+L F E PLG+ G+ WLKIHLAN+Y G DK S+ R F + H+++I+DSAD PL
Sbjct: 616 RGLLIFAEKRPLGEKGMRWLKIHLANVY--GYDKASFNEREQFADEHMEEIYDSADNPLN 673
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WWL A+DP+QCLA C + A+ SP+P + S +PVH
Sbjct: 674 GRKWWLKADDPWQCLAACYEIQAAMLSPNPLAYESALPVH 713
>gi|392587510|gb|EIW76844.1| DNA/RNA polymerase [Coniophora puteana RWD-64-598 SS2]
Length = 1215
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 215/362 (59%), Gaps = 18/362 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ-PPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V++G L+ LM+ A I+ VD+ G+ + +PAF H E ++G++
Sbjct: 422 WTQQLRVRIGGILVDCLMDVATIERQAVDKRTGEKISEQQPAFYHAY-----EYVRGQKL 476
Query: 385 GVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P V + L K G + ++PMLV P W +GG+ + S MR + +Q
Sbjct: 477 GVIRINPFVAEHLAKDGMQGTLHPRHLPMLVQPKPWVNAEQGGYIYSKSSAMRYKDSIEQ 536
Query: 443 RETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
++ ++ + E V+ LD LGST W+VN+++ ++ ++W SG L + DVP
Sbjct: 537 QKYLQHASALGNCELVYAGLDVLGSTPWKVNEKVFDIVLQVWNSGERLGKMPPAVFDVPE 596
Query: 501 PEKPNTDDETEIKK---WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
PE+P + ET++K + +++ + HS RC + K+ VAR + Y PHN
Sbjct: 597 PERP-ANVETDVKAKTVYGQRMRAWTNDKANAHSDRCSVNYKIEVARAFLGDT-MYLPHN 654
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
LDFRGRAYP+ P+LNHLG DL RG+L F +G PLG GL WLKIH+ANLY G DK +++
Sbjct: 655 LDFRGRAYPIPPHLNHLGDDLSRGLLRFAKGKPLGVRGLRWLKIHIANLY--GFDKANFD 712
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R F +L++I+DSA+ PL G+RWW+ A+DP+QCL CI L AL +P P + +SH+P
Sbjct: 713 EREEFAMKYLEEIYDSAENPLTGKRWWMKADDPWQCLGACIELKAALDAPEPTAYVSHLP 772
Query: 678 VH 679
VH
Sbjct: 773 VH 774
>gi|392563654|gb|EIW56833.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1130
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 257/479 (53%), Gaps = 32/479 (6%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+P+ L + +++IT+ +L+ L + + ++ +A +G A+E E + + K+
Sbjct: 255 SPFLKLLKPEKLSLITVLELMHLHGSGGVQDGMKTARALLAVGRAVEGEHKAEMCKKNNI 314
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
+ GD TN + ++ +RVT+ + ++ + W
Sbjct: 315 SVPNANPARSGDQNVFTN-----LGYRDLHARRVTARKYMEDSEEW---------TSDWS 360
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
Q VK+G L+ LM+ A +Q + + G+ + +PAF H+ E +G + GV
Sbjct: 361 QLVRVKIGSFLVDCLMDVATVQRSIKDPRTGEKLTEEQPAFFHSY-----EYQRGHKLGV 415
Query: 387 IECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
I+ +P V + + K + ++PMLV P W YN GG+ + ++ MR +R+Q
Sbjct: 416 IKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGYLYSRTWAMRFKESREQEL 475
Query: 445 TIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--VDQEDVPLP 501
++ + +LE VF LD L ST WR+N+ + V+ ++W SG A + ++
Sbjct: 476 YLRHASDAGRLELVFAGLDVLSSTPWRINRTVFDVVLKVWNSGERFAKIPPAVPDEPEPE 535
Query: 502 EKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDF 560
PN D + + K + + K+ + + HS RC I K+ +AR + Y PHN+DF
Sbjct: 536 RPPNMDFDNKAKMVYLERQKSWMQTKASNHSDRCSINYKVEIARAFLGDT-IYLPHNVDF 594
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGRAYP+ P+L+H+G DL RG+L F E PLG GL WLKIHLANL G DK S++ RV
Sbjct: 595 RGRAYPIPPHLSHIGDDLSRGLLLFGEAKPLGARGLRWLKIHLANL--AGYDKASFDERV 652
Query: 621 AFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F HLDDI+DSA+RPLEG RWW A+DP+QCLATCI L AL SP PE+ +PVH
Sbjct: 653 EFVHEHLDDIYDSAERPLEGGRWWTKADDPWQCLATCIELKAALTSPDPEAYECALPVH 711
>gi|296806639|ref|XP_002844119.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
gi|238845421|gb|EEQ35083.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
Length = 1375
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/482 (32%), Positives = 246/482 (51%), Gaps = 40/482 (8%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTHIGRAVKDEYIIETTRQSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
+ T+N E L K + + R ++ H + +P
Sbjct: 503 VNEAETEN------------------EAYYLNKTFRQMKVYNSTGKFRSYMQKHTEGRPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR----PAFVHTLKSFTKEALK 380
W +K+G L +L TA I P ++R PAF H + K
Sbjct: 545 VHWPTSTEIKIGALLSSMLFSTAEI--PTSHKDPVTEEVRYVNEPAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ PP W +GG P V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSPPRPWVSNTQGGFLTQPVQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-D 497
Q + + R LE +++ L LG T W++N+ + V+ W SG +A +V +
Sbjct: 658 DAQNQYLQAASERGDLEELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLN 717
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+ PEKP+ DD +K + A + HSQRC + ++ +AR +E FY PHN
Sbjct: 718 ITEPEKPDADDREAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHN 776
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S++
Sbjct: 777 MDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQ 834
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R F+ +H+DDI DSA+ L+GRRWWL A DPFQCLA C+ L AL P P +SH+P
Sbjct: 835 EREQFSIDHVDDILDSANNGLKGRRWWLKAADPFQCLAACVELKNALSLPDPTKYVSHLP 894
Query: 678 VH 679
VH
Sbjct: 895 VH 896
>gi|367000748|ref|XP_003685109.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
gi|357523407|emb|CCE62675.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
Length = 1322
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 178/523 (34%), Positives = 267/523 (51%), Gaps = 62/523 (11%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPYVK E + K + Q++ + M YAPYF + + M VIT+ +L+ L
Sbjct: 438 LPYVKQEIEKCKEVMNSTEKKSTVSRQNRLR-MEYAPYFTLVDPEKMCVITILELLKLNS 496
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + K+ +S K IK
Sbjct: 497 TGGIIEGMRTARAVIAVGKAIEMEFRSEQLLKN-------------ESHIF-----KEIK 538
Query: 294 EQEKLKKRVTSL---IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ 350
+ + LK+ V S + K++Q + I W Q A K+G +I L+ A I+
Sbjct: 539 QSQNLKRFVRSAKSRFRSIKIEQSKII---------WSQPARAKIGSIMISNLINVAKIE 589
Query: 351 PPVDQLGDSPPDIR-------PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH 403
+G P + PAF H+ + G + GV++ + L G
Sbjct: 590 -----VGGMDPVTKEKVYGEVPAFSHSYQYHN-----GLKLGVLKIHKSLVHQL--NGER 637
Query: 404 MIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVF 458
M+ +PMLV P W+ + GG+++ S ++R+ + +Q +K ++ ++ V+
Sbjct: 638 MVAAVQPQLLPMLVAPREWKNWKCGGYYYTQSTLIRSKDSPEQVAYLKAVSDAGAIDRVY 697
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--LPEKPNTDDETEIKKWK 516
L+ LGST W VN++I VI +W +G + ++ LP D + I++WK
Sbjct: 698 HGLNVLGSTPWTVNRKIFNVISEVWNTGKPFLDIPGIQNTLNLLPPPAKDADPSIIRQWK 757
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
K K + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+
Sbjct: 758 LKNKDIANKFSSNRSVRCDSNYKLEIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHLGN 816
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
D+ RG+L F G LG +GL WLK+HL+NLY G DK S E RV F E ++++I DSA+
Sbjct: 817 DMSRGLLIFWRGKQLGASGLKWLKVHLSNLY--GFDKASLEDRVRFAEENMENIKDSAEN 874
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL G+ WW A+ P+Q L+TCI L+EA + +PE ISH PVH
Sbjct: 875 PLNGKGWWKSADKPWQALSTCIELNEAFKLENPEDFISHQPVH 917
>gi|296424611|ref|XP_002841841.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638090|emb|CAZ86032.1| unnamed protein product [Tuber melanosporum]
Length = 1416
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 281/567 (49%), Gaps = 63/567 (11%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD 203
RQ +E A++ A + ++ + E+ + + SL W + L I ++ Q
Sbjct: 355 RQKLLEEHAFDSARERWKRDFESLSERGVIKQDAEINSLLWEWHQALVPLIHEELKRVQH 414
Query: 204 KWKHMT----------YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
+ T Y P+ + + +A IT+ +L+ N ++ +A Q+G
Sbjct: 415 AEESGTKAAGAVDRCFYGPFMRVIEPEKLAAITIIELLRTHTLNGVGAGLKASRAVLQLG 474
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
+E E + Q K + + N + + E + D + +LI K K
Sbjct: 475 REVELEYQAQEVAKQ-RGEGFFANMSKAELETIFRD-----------RSAFRNLISKSK- 521
Query: 312 QQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDI-- 363
+ P W VK+G LI +L+ A I P + + +S I
Sbjct: 522 ----SASDLDFEEIPEWPNTVKVKLGGVLISMLIHVARIPVEAAVPGLTEGTESSEKIVQ 577
Query: 364 -RPAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKTGRHMIIPYMPMLVPPLNWRG 420
PAF H E +GR+ GV++ P + R G + I +PM+V PL W
Sbjct: 578 HLPAFQHCY-----EYQRGRKLGVVKLHPELVKRLGTDDLNFTAIGKSLPMVVRPLPWTD 632
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVI 479
++ GG+F+ S V+R + +QR+ +K R L+ +F LD LG T WR+N+R+ V+
Sbjct: 633 WDEGGYFYTRSKVVRIRESVEQRQYVKAAAERGHLDHLFAGLDVLGRTAWRINRRVFDVV 692
Query: 480 DRMWASGGCLA---GLVDQEDVPLPEKPNTDDETEIKKWKW-----KVKTAKKQNSEKHS 531
+W A L + PL +PN D + +W+W +V TA+K N HS
Sbjct: 693 LEVWNQEKAFAKIPALNPDINFPLEPEPNADPKV---RWEWAREMKRVNTARKNN---HS 746
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
RCD+ K+ +AR EE FY+PHN+DFRGRAYP+ P LNH+G+DL RG+L F E +
Sbjct: 747 TRCDVNFKVEIARAFLFEE-FYFPHNIDFRGRAYPIPPNLNHIGNDLSRGLLMFSEAKEV 805
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL W+KIHLANL G DK S+ RVAFTE ++++I DSA+ PL G RWWL ++DP+
Sbjct: 806 GETGLRWMKIHLANL--AGYDKASFSQRVAFTEENIENIHDSAENPLTGNRWWLKSDDPW 863
Query: 652 QCLATCINLSEALRSPSPESTISHIPV 678
Q LA+C L+EAL +P HIPV
Sbjct: 864 QLLASCFALNEALSLNNPHEYKCHIPV 890
>gi|151940727|gb|EDN59114.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae YJM789]
Length = 1351
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D + ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPSILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA+ PL
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|14318482|ref|NP_116617.1| Rpo41p [Saccharomyces cerevisiae S288c]
gi|308153492|sp|P13433.2|RPOM_YEAST RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|836718|dbj|BAA09203.1| mithochondrial DNA-directed RNA polymerase [Saccharomyces
cerevisiae]
gi|285811859|tpg|DAA12404.1| TPA: Rpo41p [Saccharomyces cerevisiae S288c]
gi|349577881|dbj|GAA23048.1| K7_Rpo41p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299635|gb|EIW10728.1| Rpo41p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1589360|prf||2210408E RNA polymerase
Length = 1351
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/489 (34%), Positives = 253/489 (51%), Gaps = 56/489 (11%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCL--A 490
RT + +Q +K + ++ V+ L+ LG T W VN+++ V+ ++W G G L
Sbjct: 699 RTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIP 758
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
G D+ +P P P D + ++ WK +VKT + S S RCD KL +AR E+
Sbjct: 759 GAQDEMVLP-PAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK 817
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
Y+PHNLDFRGRAYP+ P+ NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G
Sbjct: 818 -LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--G 874
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DKL + RVAFTE+HL DI DSA+ PL G RWW A+ P+Q LATC L+E ++ +PE
Sbjct: 875 FDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPE 934
Query: 671 STISHIPVH 679
ISH PVH
Sbjct: 935 EFISHQPVH 943
>gi|224116192|ref|XP_002331984.1| predicted protein [Populus trichocarpa]
gi|222832108|gb|EEE70585.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 173/272 (63%), Gaps = 47/272 (17%)
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFN 215
A KEY++LL DMCE KLAPNLPY KSLFLGWFEP DAIAK+Q + YAPYF+
Sbjct: 2 ATKEYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFD 61
Query: 216 NLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKK--- 270
LPAD M+VI MH+L ++MT G RVV AAC IG+AIE E RI + + T+KK
Sbjct: 62 LLPADKMSVIAMHQLGAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTRKKKEK 121
Query: 271 -NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQ 329
N + N +EG+S ++KEQE L+K
Sbjct: 122 ANDSKNGVEGES-------PAVMKEQENLRK----------------------------- 145
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIE 388
KVG RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++ + E KG ++YGVI+
Sbjct: 146 ----KVGSRLIELLLQTAYIQPPSDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQ 201
Query: 389 CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRG 420
CDPLV KGLEKT RHM+IPYMPMLVPPL WRG
Sbjct: 202 CDPLVLKGLEKTARHMVIPYMPMLVPPLRWRG 233
>gi|147820783|emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
Length = 1312
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/247 (51%), Positives = 180/247 (72%), Gaps = 12/247 (4%)
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
+ + RI SF + TK N + G S+ + ++E+E L+KRV S I+K+K+
Sbjct: 585 TVNEKVRIHSFLEKTK--NFERHKTVGHSQ-------EGLREKEILRKRVKSFIRKKKII 635
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+V+ +VK + PWG+D K+G RLI+LL ETAY+Q PV Q D PPD+RPAF HT K
Sbjct: 636 EVQKLVKNE-EITPWGRDTQAKLGSRLIELLTETAYVQTPVXQSADCPPDVRPAFRHTFK 694
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
+ TKE+ + R+YGVIECDPLV GL++T +HM+IPY+PML+PP W+GY++GG+ FLP
Sbjct: 695 TVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLP 754
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
SYVMRTHG+R+Q++ +K PR QL+ VF+ALDTLG+TKWR+N+R+L V++ +WA GG L
Sbjct: 755 SYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLG 814
Query: 491 GLVDQED 497
GLVD+E+
Sbjct: 815 GLVDREN 821
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y +L+RRQ+K ETEAWE+ +EY+++ +MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+
Sbjct: 143 YGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKE 202
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIE 255
Q + K + YAP+ LPAD MAVI MHK++GL+M G VRVVQAA QIG AIE
Sbjct: 203 QRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIE 262
Query: 256 NEAR 259
EA+
Sbjct: 263 QEAK 266
>gi|393219634|gb|EJD05121.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 1397
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 186/581 (32%), Positives = 291/581 (50%), Gaps = 58/581 (9%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR---- 191
A Y L ++K E+E E+ Q L++ ++ + W E L+
Sbjct: 369 ASVYDLANERLKHESEKLEEVVGNEQKLMSAQLQKWM-----------FDWHEKLQRRLT 417
Query: 192 ---DAIAKDQATA----QDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VR 242
+ I +D+A+ +D M P+ + L +++IT+ +L+ L T ++
Sbjct: 418 AEIEIIIRDEASVGPSRKDSNTKMRMGPFLSLLKPSKLSLITILELMRLQGTGGVTEGMK 477
Query: 243 VVQAACQIGEAIENEARIQSFFKST------KKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
+A +G+AIE E + Q K+ + T G I
Sbjct: 478 TARALLTVGKAIEMEYKAQILKKNNVHVPVMSSFSLTAAGGAGAGGGGGGAGGGGIGGGG 537
Query: 297 KLKKRVTSLIKKQKLQQVR----GIVKGHVDSKPWGQD----ALVKVGCRLIQLLMETAY 348
+ + ++ +++R K DS+ W D V+V L+ LM+ A
Sbjct: 538 VGRINDSGFFTRRAYEELREWRKAASKHFEDSQEWASDWTHAIRVRVASFLVDCLMDVAT 597
Query: 349 I-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMI 405
+ + V++ G+ + +PAF + E L+G R GVI +P+V + L+K R +
Sbjct: 598 VTRTAVNRRTGEEIFEQQPAFFQSY-----EYLRGHRLGVIRLNPVVAERLQKDDIRATL 652
Query: 406 IP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDT 463
P ++PMLV P W ++ GG+ + + VMR ++Q ++ ++ +E VF +LD
Sbjct: 653 HPRHLPMLVKPKAWINHDEGGYIYNKNSVMRLKDTQEQLTYLRHAAQAGHMEHVFASLDV 712
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV-PLPEKPNTDDETEIKKWK----WK 518
LGST W +N+ I V+ ++W SG + + + P P +P D + K + WK
Sbjct: 713 LGSTPWVINREIFDVVLQVWNSGDRFVKIPEANYLEPEPVRPENYDTDQAAKTRYLMAWK 772
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
K NS HS RC + K+ +AR + Y+PHN+DFRGRAYP+ P+LNH+G DL
Sbjct: 773 QWQTNKANS--HSTRCSVNYKVEIARSFL-ADTMYFPHNIDFRGRAYPIPPHLNHIGDDL 829
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+++F E PLG +GL WLKIHLANL G DK S+E RV F +H+ DI DSA+RPL
Sbjct: 830 SRGLMKFAEKKPLGTSGLRWLKIHLANL--SGFDKGSFEERVQFVTDHMADIIDSAERPL 887
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EG +WW+ A+DP+QCLA C L AL S PE S++PVH
Sbjct: 888 EGNQWWVKADDPWQCLAACKELHHALESSDPEGYESNLPVH 928
>gi|388858367|emb|CCF48096.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial [Ustilago
hordei]
Length = 1536
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 171/490 (34%), Positives = 262/490 (53%), Gaps = 56/490 (11%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ +P +A+IT+ ++ + M+ G V + +A +G AIE
Sbjct: 600 PFLRLVPVSKLALITILEI--MRMSGNGGVADGMKTTRALLAVGRAIE------------ 645
Query: 268 KKKNATDNNLEGDSEPLTNDP---EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK----- 319
+E S+ + +P + Q L+KR LI ++R K
Sbjct: 646 ---------MEYHSDVVRKNPRIFQNAHTAQTVLRKR--GLINLAARNEIRAWQKQQEEE 694
Query: 320 GHVDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
G + S P W Q +VG L+Q LM A + + D+ G + +PAF T +
Sbjct: 695 GVLSSIPKWTQAVRARVGSYLVQHLMHVANVSRKATDRDGVLWEEDQPAFYSTY-----Q 749
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
L G++ GVI+ + ++ + L+K + ++PMLVPP W ++ GG++ + MR
Sbjct: 750 YLGGKKLGVIKLNEVIAQRLDKDSMQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMR 809
Query: 436 THGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-- 492
+ +Q ++ + ++ + ALD LG+T W++NK I V+ +W SG AG+
Sbjct: 810 YKDSAEQGSYLRAASDTGDVDTILAALDVLGNTSWKINKPIFDVMLEIWNSGKDTAGMPP 869
Query: 493 VDQEDVPLPEKPNT--DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
VD E P P+KP+ D + ++K +Q + HSQRCD+ KL +AR E
Sbjct: 870 VDMEQ-PEPQKPDNYNHDMKARSVYLQRLKQWNQQCASNHSQRCDVNYKLEIARAYLGER 928
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
FY+PHN+DFRGRAYPM P+LNH+G+DLCRG+L F + PLGK GL WL+IH++N++ G
Sbjct: 929 -FYFPHNMDFRGRAYPMPPHLNHIGNDLCRGLLMFADAKPLGKTGLRWLRIHISNVF--G 985
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP-SP 669
DK S+ R F +H DI DS +R L+G+RWWL A+DP+QCLA C+ L AL P P
Sbjct: 986 YDKASFGEREQFAIDHEADIRDSVERTLDGQRWWLKADDPWQCLAACMELKAALDHPDGP 1045
Query: 670 ESTISHIPVH 679
E+ S++PVH
Sbjct: 1046 EAYESNLPVH 1055
>gi|281210629|gb|EFA84795.1| DNA-dependent RNA polymerase [Polysphondylium pallidum PN500]
Length = 1010
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 214/349 (61%), Gaps = 27/349 (7%)
Query: 339 LIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE 398
+ Q M YI G+ + PAF + + ++YGVI C V ++
Sbjct: 250 MFQCCMINKYID------GEDIDEKVPAFYYKYRYNN-----NKKYGVISCHDNVYSLMD 298
Query: 399 KTGRHMIIPYM-----PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ 453
+ H ++ M PM+VPP W N+G + P ++MRT+G++ Q+ ++ +S
Sbjct: 299 EG--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSLY---QSD 353
Query: 454 LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD---ET 510
L +++ L+ LG W+ N++++ ++ W GG +A L + D LPE P+ +D E
Sbjct: 354 LTNIYEGLNVLGEVPWKTNEKMMSILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEK 413
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
+ + K++ K N++ HS RCD KL+VA++++ E FY+PHN+DFRGR+YP+ P+
Sbjct: 414 VKRDFNKKLRKVKGANNDLHSLRCDTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPH 472
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+GSD CR +L+F E LG+ G WLK+ +ANL+ GVDK+S+E RVAFT ++++I
Sbjct: 473 LNHMGSDFCRSMLKFAEEKELGERGFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENI 530
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+DSADRPL+G+RWWL A+ P+Q LA CI L++A+RS +P + S +P+H
Sbjct: 531 YDSADRPLDGKRWWLKADSPWQTLAACIELTDAIRSGNPTTFKSSLPIH 579
>gi|390596373|gb|EIN05775.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 968
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 273/496 (55%), Gaps = 37/496 (7%)
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT---NAGEVRVVQAACQIGEAIEN 256
TA+ K P+ + L +++IT+ +L+ L + N+G ++ +A +G+A+E
Sbjct: 100 TAKRSRKDERLGPFLSLLKPSKLSLITILELMHLSGSGGVNSG-MKTARALLTVGKAVEL 158
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL----IKKQKLQ 312
E + + ++ + + SE ++K + T L + +++
Sbjct: 159 EYKAEMCRRNDIQIPQASSTFASKSEI-----------EKKQRGFFTGLGYRELHARRVA 207
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQL-GDSPPDIRPAFVHT 370
R + + + W Q+ V+VG L+ LM+ A ++ ++++ G + PAF H+
Sbjct: 208 AARYVQEAEEWTSEWTQELKVRVGSFLVDTLMDVATVERTAINKVTGQEVTEEHPAFYHS 267
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFF 428
E +KG + G+I +P+V + + K R + P ++PMLV P W +N+GG+ +
Sbjct: 268 Y-----EYMKGHKLGIIRLNPVVAERMAKDNLRDTLHPRHLPMLVKPKPWLDHNQGGYIY 322
Query: 429 LPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ MR +R+Q + + + +E V+ LD LGST W +N+ + ++ ++W SG
Sbjct: 323 NKTSAMRFKESREQEVYLAHASAQGHVELVYAGLDVLGSTPWVINRDVFDIVLQVWNSGE 382
Query: 488 CLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK---HSQRCDIELKLSVA 543
A + D P PE+P + ET+ K + AK+ +K HS+RC++ K+ +A
Sbjct: 383 RFAKIPPAAFDGPEPERPG-EGETDPHKKTIYITRAKQYAQDKASNHSERCNVNYKIEIA 441
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R + FY PHNLDFRGRAYP+ P+LNH+G DL RG+L+F E PLG+ GL WLKIHL
Sbjct: 442 RAFLGDT-FYLPHNLDFRGRAYPIPPHLNHIGDDLARGLLKFGESRPLGERGLRWLKIHL 500
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
ANLY G DK S++ RV + ++ I+DSA +PL+G+RWW A+DP+QCLATC L A
Sbjct: 501 ANLY--GYDKASFDERVNWVHERMEQIYDSATKPLDGQRWWTHADDPWQCLATCKELHAA 558
Query: 664 LRSPSPESTISHIPVH 679
L SP P + S +PVH
Sbjct: 559 LESPDPLAFESSLPVH 574
>gi|378726279|gb|EHY52738.1| DNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1425
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 179/563 (31%), Positives = 280/563 (49%), Gaps = 53/563 (9%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY--VKSLFLGWFEPLRDAIAKD---- 197
RQ K+E +A + A + ++ + +L + + +L W E L + I +
Sbjct: 353 RQRKLERDAIQSALQRWKTEYQKRARSGITGDLAHGKIGALLWQWHEILAEKITNEIKLA 412
Query: 198 --------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EVRVVQA 246
+ TAQ K + +P+ LPA+ +A +T L+ + M+ G + ++V+
Sbjct: 413 REEDATPGKKTAQQKLR-AECSPFLELLPAERLAAVTSVALMQI-MSKVGASKQAKLVRL 470
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
++G+AIE E + +K+NA E +E P K + + R +S
Sbjct: 471 VTELGQAIETE---YDATQVAQKRNAMLKAKEKLAETAPGAPLKWDETLDNTLHRRSS-- 525
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIR 364
+ K W + K+G L +L+ +TA I + G +
Sbjct: 526 --------HHAATPYAYKKNWSKTIHAKLGSVLCELMFDTAKIMITREDKTTGKKVSIAQ 577
Query: 365 PAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNR 423
P F+H+ S+ GRR G + + V+ + + H+I +PM+ PP W+G+
Sbjct: 578 PVFIHS-TSYQN----GRRVGTVSLHEDFVKILVSEPAEHLIAKQLPMVCPPRPWKGFYD 632
Query: 424 GGHFFL----PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
GG FL P ++ + Q+ + R L+ +F +D LG T WR+NK++ V+
Sbjct: 633 GG--FLESSQPFLRVKYNETSQKDYGVAAAERGDLDQLFAGVDILGKTGWRINKQVFSVM 690
Query: 480 DRMWASGGCLAGLVD-QEDVPLPEKPNTDDETEIKKWKW--KVKTAKKQNSEKHSQRCDI 536
W SG +A L + P E+P ++ ++W W K++ + S HS RC
Sbjct: 691 LEAWNSGEEIANLPPLNKQYPEVERP-AENAPPKERWNWFLKMRMIDNERSGIHSNRCFQ 749
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
++ +A+ DE FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+ G LG GL
Sbjct: 750 NFQMEIAKAYLDET-FYLPHNVDFRGRAYPIPPYLNQMGADNARGLLLFDRGRELGADGL 808
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLKIHLAN+Y G DK S R F +H+DD++DS PL+GRRWWL AEDP+QCLAT
Sbjct: 809 RWLKIHLANVY--GYDKASLSDRAQFPMDHIDDVYDSVQNPLKGRRWWLTAEDPWQCLAT 866
Query: 657 CINLSEALRSPSPESTISHIPVH 679
C L+ AL SP P +S +P+H
Sbjct: 867 CYELANALDSPDPTKYVSRLPIH 889
>gi|116195484|ref|XP_001223554.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
gi|88180253|gb|EAQ87721.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
Length = 1414
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 183/601 (30%), Positives = 298/601 (49%), Gaps = 46/601 (7%)
Query: 114 SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLA 173
S+ + SML + P G +G+ + Q ++E + + A +++ + L
Sbjct: 335 SLKTALSMLSELPP--GLDIGSLPIAQRREVQARLEKDCVDAAVARWREENEALMGMGLN 392
Query: 174 PNL--PYVKSLFLGWFEPLRDAIAKDQAT----------AQDKWKHMTYAPYFNNLPADM 221
L P + S W + L A++QA +++ Y P+ PA
Sbjct: 393 TQLSTPTLNSKLYDWHQALEARFAEEQAKVEVSESATKKSKEDMDRCVYGPHLLQSPAKR 452
Query: 222 MAVIT-MHKLVGLLMTNAGE----VRVVQAACQIGEA---IENEARIQSFFKSTKKKNAT 273
+A +T + L L M A + +VQ +I E +N+A+ KS ++ +
Sbjct: 453 LAAVTILSALSSLAMHGADKGIPVSNMVQQLAKIAEEDIRAQNQAKRAPNAKSKPRRQQS 512
Query: 274 DNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH--------VDSK 325
L + +P + + + + + + V + V+++
Sbjct: 513 ARQLIRLYDSTPGEPAAVPEAEPTAAAEAEPAAEPESMPPAPPAVTDNSFAYRADSVEAR 572
Query: 326 PWGQDALVKVGCRLIQLLMETAYI--QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
W KVG L+ LM+TA I Q + + +PAF H + + KGR+
Sbjct: 573 -WPMLIKAKVGAVLLAALMDTAKIVVQREHPETKEKLSQTQPAFTHAV-----QLKKGRK 626
Query: 384 YGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR--THGAR 440
GVI+ + + + +++ R + ++PM+V P+ W +++GG P+ ++R H
Sbjct: 627 IGVIQPNRELIELMKREPRGEALARHLPMVVEPVPWSKFDKGGFISAPTPLIRLKNHEKD 686
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVP 499
Q+ R +E + + LD LG T W++N+ + V+ W +G A L + +P
Sbjct: 687 QRIYAEAAIERGDMEQMMRGLDVLGKTAWKINRPVFDVMLEAWNTGEEFANLPALDPKIP 746
Query: 500 LPEKPN-TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
+P +P+ TDD + + W VK A+ + S HS RC + +L +AR +D+ FY+PHN+
Sbjct: 747 IPAEPDSTDDPMKKRVWLRSVKAAENEKSGLHSVRCFMNFQLEIARAFRDQT-FYFPHNI 805
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPM YLNH+G+D RG+L F +G PLG+ GL WLK+ L+N+Y G DK S +
Sbjct: 806 DFRGRAYPMPTYLNHMGADHMRGLLLFAKGKPLGEKGLAWLKVQLSNVY--GFDKASLQE 863
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R F N+L++IFDSAD PL G+RWWL AEDP+QCL C L AL SP P + +SH+PV
Sbjct: 864 REDFATNNLENIFDSADNPLTGKRWWLQAEDPWQCLGACFELKAALSSPDPAAYVSHLPV 923
Query: 679 H 679
H
Sbjct: 924 H 924
>gi|270356866|gb|ACZ80653.1| putative DNA-dependent RNA polymerase RPO41 [Filobasidiella
depauperata]
Length = 1181
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 266/498 (53%), Gaps = 57/498 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTK 268
Y + LP D +A+IT+ ++ + M +G + +V++ +G+A+E E F++
Sbjct: 411 YLSLLPVDKLALITILEI--MRMAGSGGIIDGMKVLRGMVAVGKAVETE------FRAET 462
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK--- 325
KN ++ T DP+ Q+ ++ ++S+ KK Q G + H+ S
Sbjct: 463 IKNVA--GIDSYHWMRTIDPQT----QKPSRQLISSVWKKIGNQA--GESQRHISSSSNS 514
Query: 326 ---------PWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPAFVHTLKSF 374
W + + VG L+ L++ A ++ G+ + +PAF H
Sbjct: 515 EDMKDLWTPAWSRMIQLGVGSELVDALLKVAKVKREATNAVTGEKVVEEQPAFTHAY--- 571
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFF---L 429
E ++G+ GVI+ +P+V + L ++I ++PMLVPPL WR ++ GG+ L
Sbjct: 572 --EYVRGKCLGVIKLNPVVAERLANDDIGVVIHPKHLPMLVPPLPWRAHDNGGYLMHSGL 629
Query: 430 PSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
VMR + +Q++ +K + LEPVF LD L ST W++N+++ V+ W G
Sbjct: 630 TVPVMRYKESLEQQKWLKAAAEAGHLEPVFHGLDVLSSTPWQINRKVFDVVLEAWNQGHA 689
Query: 489 LAGLV---DQEDVPLPEKP---NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
+A + + D P+KP N D + + + K+K + Q + H++RC + +
Sbjct: 690 IADIPPSKEMADYEFPDKPEPANQDPQLRLL-YVEKMKKVRAQQRKDHAERCKFNYNIEI 748
Query: 543 ARK-MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
AR +KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F PLG GL WLKI
Sbjct: 749 ARSYLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGLTGLKWLKI 806
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
HLAN+Y G DK S+ R F ++ +IFDSA+ PL G RWWL AEDP+QCLA C L+
Sbjct: 807 HLANVY--GYDKASFGERAKFAADNEKEIFDSAENPLTGNRWWLKAEDPWQCLAACFELT 864
Query: 662 EALRSPSPESTISHIPVH 679
ALRS P + S +PVH
Sbjct: 865 AALRSSDPAAYESALPVH 882
>gi|170097643|ref|XP_001880041.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645444|gb|EDR09692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 960
Score = 268 bits (684), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 290/564 (51%), Gaps = 58/564 (10%)
Query: 144 RQIKIETEAWEQAAK------EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD----- 192
RQ +ET +E A + EY + L E +L + ++S W + L+
Sbjct: 1 RQKHLETSVYEIARERMKEEHEYLESLGINAENRLKDST--LQSWMWQWHQNLKSRLESE 58
Query: 193 --AIAKDQATAQDKWKHMT--YAPYFNNLPADMMAVITMHKLVGLLMT---NAGEVRVVQ 245
IA +A ++ T +PY + AD ++ IT+ +L+ L + N G ++ +
Sbjct: 59 IKLIAAFEAKMLNRHDQTTQLLSPYLALVKADRLSYITILELMRLQGSGGVNHG-MKTTR 117
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A IG+A+E E + Q + + + G S TN L S
Sbjct: 118 ALIAIGKAVEMEYKAQM----CRTNDIAIPTMTGHS---TNFFSVL----------GYSN 160
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDI 363
++K+++ R + G + PW Q K+G L++ LM+ AY++ D G S +
Sbjct: 161 LQKRRMAAARHMQDGEAWTTPWSQAVRSKIGGILVECLMDVAYVRRQRDDQVTGKSVTED 220
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGY 421
+PAF H E ++G + G+++ +P V + L R I P ++PMLVPP W
Sbjct: 221 QPAFYHAY-----EYVRGTKLGILKLNPAVAERLSTDRLRETIHPRHLPMLVPPKPWMHI 275
Query: 422 NRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
+GG+ + + VMR + +Q + K ++E V LD LGST WR+NK + V+
Sbjct: 276 RQGGYLYNKTSVMRFKESIEQETYLQKAIDDGKMELVLAGLDVLGSTPWRINKNVYEVVL 335
Query: 481 RMWASGGCLA----GLVDQEDVPLPEKPNTDDETE-IKKWKWKVKTAKKQNSEKHSQRCD 535
++W SG + + DQ +PE D + + + K T K N+ HS+RC+
Sbjct: 336 KVWNSGERMGKIPPAVYDQPAPEIPENYEKDLQARSVHLQRQKSYTQGKANN--HSERCN 393
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
+ K+ +AR +E Y PHNLDFRGRAYP+ P+L+H+G DLCRG+L F + PLG+ G
Sbjct: 394 VNYKIEIARAFLHDE-LYMPHNLDFRGRAYPIPPHLSHIGDDLCRGLLLFADAKPLGERG 452
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIHLANLY G DK S++ R + LDDI DSA PL+G+RWW +DP+Q LA
Sbjct: 453 LWWLKIHLANLY--GYDKASFQERADWVMERLDDIADSATNPLDGKRWWTKGDDPWQVLA 510
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
C+ L AL+S P + +S +PVH
Sbjct: 511 ACMELHAALQSEDPLAYMSTLPVH 534
>gi|325187365|emb|CCA21903.1| DNAdependent RNA polymerase putative [Albugo laibachii Nc14]
Length = 1012
Score = 268 bits (684), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 177/561 (31%), Positives = 274/561 (48%), Gaps = 64/561 (11%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ---AT 200
RQI++E ++ A +++ + D+ + A + ++L +GW EP I+ +Q
Sbjct: 171 RQIRLECAIYDMAVEKHLAVRQDVGKLGRASQVNAAQNLVVGWMEPAIALISNEQRDVLA 230
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+ Y P L A ++A ++++ ++ + ++ R ++ A +G +
Sbjct: 231 GKRSLDSSIYGPALLLLDAKVLAALSINTMLNNCLVDSKGARFIKLALALGNI------V 284
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
Q K+K D EK L + + + + ++ ++ V
Sbjct: 285 QEHICENKRKR--------------KDSEKYFL---SLVRGIQNDVFRKHMENV------ 321
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG-------------DSPPDIRPAF 367
+ + W + +KVG LI + + Y+ + Q + PP AF
Sbjct: 322 YTTAGYWDKRLNLKVGAALIDFIQRSCYVPDRLLQAAGRKVHGTLEEHDPEKPPKKEQAF 381
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHM-IIP----YMPMLVPPLNWRGYN 422
VH + E + RR G+ + + + T M ++P Y+PMLVPP W N
Sbjct: 382 VHC---YYYE--RNRRSGMFKMHDTIFNLILNTDPGMNVLPWTARYLPMLVPPKRWENPN 436
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM 482
GG+ L + +MR Q + +K P L+ VF L+ L W +N+ IL VI R+
Sbjct: 437 NGGYLKLHTKIMRQRDIVWQMDCVKRAP---LQEVFTTLNLLAEVPWVINQEILDVILRI 493
Query: 483 WASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKL 540
W GG L +ED P P+ D+E K+ AK ++N E HS RCD KL
Sbjct: 494 WQEGGGFGDLPSREDFPFPDNKPEDEEDPEKRQALAKAHAKVRQRNRELHSLRCDTLYKL 553
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
VA++ ++E+ Y+P+NLDFRGR YP+ P LNHLGSD+ R +L F + PLGK GL WLK
Sbjct: 554 QVAQEFRNEKEIYFPYNLDFRGRVYPIPPNLNHLGSDMSRSLLLFRDRKPLGKDGLRWLK 613
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP--LEGRRWWLGAEDPFQCLATCI 658
IHLAN++ GVDK S++ RVAFTE++L +F SA P + WW AE PF L C
Sbjct: 614 IHLANVF--GVDKCSFDERVAFTESNLTKVFASARDPHGVGDAVWWKTAEYPFLALGVCF 671
Query: 659 NLSEALRSPSPESTISHIPVH 679
L AL SP PE+ +S+IPVH
Sbjct: 672 ELKRALNSPDPETYLSNIPVH 692
>gi|212530466|ref|XP_002145390.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
gi|210074788|gb|EEA28875.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
Length = 1378
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 180/559 (32%), Positives = 283/559 (50%), Gaps = 45/559 (8%)
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKL--APNLPYVKSLFLGWFEPLRDAIAKDQA 199
++RQ ++E +A + A K +Q + M + + + SL W+ L + ++
Sbjct: 340 RKRQAELEGKAVDTAKKRWQREMETMRSAGIDTSGGGKTIASLLEQWYNDLVIKVKEEIN 399
Query: 200 T--AQDKWKHMT-------YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAAC 248
T + +K ++ YA + LP D +A IT+ ++ L E ++V
Sbjct: 400 TFGSSEKSSKLSPDDKTREYADFLRLLPPDTLAAITVMHIIQLFARAGVEKGLKVPTIMT 459
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+G+ ++NE QS +++ + +K IK+ + +K+ IK
Sbjct: 460 SLGQEVQNEFIAQSMIAKSERDSRH---------------QKFIKQVVENRKKKAGRIKF 504
Query: 309 QKLQQVRGIVKGHVDSK-PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI---R 364
+KL +DS+ W D KVG L+ LL + A P V + ++ I
Sbjct: 505 KKLLTEMKCDSRQIDSELNWPIDVHAKVGGALLSLLFDCAKT-PVVQEDPETKKRITIME 563
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGYNR 423
PAF H+ E +GR++G++ P V + L + + + +MPML P W G+++
Sbjct: 564 PAFQHSY-----EINRGRKFGLLHAHPEVTRRLIREAPNAVHARHMPMLSEPQPWTGFDK 618
Query: 424 GGHFFLPSYVMRTH--GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
GG S ++RT QQ K + L V LD LG T W +N + V+
Sbjct: 619 GGFLAQRSSIIRTTPGDTLQQSYMKKALEKDGLPEVRAGLDILGKTAWTINNDVFDVMLE 678
Query: 482 MWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
W +G + + +P+PEKP DD +K + K++ A+ S HSQRC I ++
Sbjct: 679 AWNTGEAFPKIPPLDPKIPMPEKPADDDIEAMKVYNNKLREAENLRSGLHSQRCFINFQM 738
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+AR K++ FY PHN+DFRGRAYP+ YLN + +D R +L F++G LG+AGL WLK
Sbjct: 739 EIARAYKNQT-FYLPHNMDFRGRAYPLPAYLNQMSADNARSLLLFKKGKALGEAGLRWLK 797
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
IHL+N+Y G DK S + R FT HLDD+ DSA++ L GR+W++ AEDP+QCLA C L
Sbjct: 798 IHLSNVY--GFDKASLQEREEFTMKHLDDVLDSANKGLHGRKWFMEAEDPWQCLAACCEL 855
Query: 661 SEALRSPSPESTISHIPVH 679
AL+ SP +S +PVH
Sbjct: 856 RNALQLESPAEYMSRLPVH 874
>gi|172490|gb|AAA35007.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae]
Length = 1351
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 174/521 (33%), Positives = 264/521 (50%), Gaps = 56/521 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 567
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 619 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 666
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 667 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 726
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D + ++ WK +
Sbjct: 727 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPSILRAWKLQ 785
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
VKT + S S RCD KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+
Sbjct: 786 VKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDM 844
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI DSA++ L
Sbjct: 845 SRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAEKSL 902
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 903 TGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 943
>gi|448089097|ref|XP_004196715.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|448093284|ref|XP_004197746.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359378137|emb|CCE84396.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359379168|emb|CCE83365.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
Length = 1317
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 257/488 (52%), Gaps = 56/488 (11%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFF- 264
+ YAPY +P M VIT+ +L+ L T +R +A +G A+E E + Q
Sbjct: 463 LYYAPYLILVPPKKMCVITILELLKLNSTGGIIDGMRTARAVISVGRALELEYKSQRLMQ 522
Query: 265 ---KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+S KK T TN ++ +++++ K +
Sbjct: 523 AEGRSLSKKLKT-----------TNQWKRFLRQRKDYNK------------------EDP 553
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKE 377
+ + W KVG L LL+ A + PV G + ++PAF HT + F
Sbjct: 554 IANNEWDYPIYAKVGSVLASLLIHVAKV--PVKGTDPTTGKTVRGMQPAFHHTYQFF--- 608
Query: 378 ALKGRRYGVIEC-DPLVRK-GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
+G++ GV++ LVR+ + G + +PMLVPP WR YN GG+ F + ++R
Sbjct: 609 --QGQKLGVLKVHKSLVRQLAGNELGNSVQPQLLPMLVPPRPWRSYNDGGYLFSQNNIVR 666
Query: 436 THGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG---CLAG 491
+ + ++ + + L+P++ L+ LG+T W VN+++ VI ++W +G +
Sbjct: 667 IKDSAETTAYLRAASDMNNLDPIYDGLNVLGNTAWTVNRKVFDVISKVWNTGEEYLDIPP 726
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
++++ D+P P P + +E ++ +V+ A + SQRCD KL +AR E+
Sbjct: 727 IIEEPDLPSP-LPLNAEPSEKADYQRRVRKAVNDAASARSQRCDTNYKLEIARGFIGEK- 784
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
++PHN+DFRGRAYP+ P+ NHLG+D+ R + F +G LG+ GL WLKIHLAN+Y GV
Sbjct: 785 LFFPHNVDFRGRAYPISPHFNHLGNDMTRSLFLFWDGKKLGEQGLRWLKIHLANVY--GV 842
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK + RV F E++LD+IFDSA PL+GR+WW + P+Q L+ C LSEA + P
Sbjct: 843 DKAPLDERVKFVEDNLDNIFDSAKNPLDGRKWWEKGDKPWQVLSVCFELSEAYKLDDPTE 902
Query: 672 TISHIPVH 679
+SHIPVH
Sbjct: 903 YVSHIPVH 910
>gi|219127811|ref|XP_002184121.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404352|gb|EEC44299.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1188
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 182/625 (29%), Positives = 303/625 (48%), Gaps = 104/625 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+ Q+ +E EA +++ YQ ++ +K +L V+ L W++PL+ I Q
Sbjct: 260 LEELQLWLECEAQQESITRYQHVIDSARTRKDYASLSLVQRHVLQWYQPLKHEIESLQKA 319
Query: 201 ----AQD-------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG-----EVRVV 244
QD K Y P+ +LP + +AVI H+ + ++N G
Sbjct: 320 YIFKEQDPEGVVLTKRAANVYGPFICSLPPEKLAVICAHEAIMSGLSNPGVDGRDGTAFT 379
Query: 245 QAACQIGEAIENEARIQSF----FKSTKKKNAT----------DNNLEGDSE-------- 282
A +IG+A+E E IQ FK ++ +++T + +EGD E
Sbjct: 380 AVARRIGDAVEQEVVIQRMLHRRFKESQARHSTQDPNRILPKPEEEVEGDVELSTDKIDE 439
Query: 283 ----------------------------PLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
L N +++ + +KKR L+ + +++
Sbjct: 440 DMNDGNATTRSKSSTGTEDVHKWAYAASHLKNYLDEISYRKPSVKKR---LVIEYAIRRA 496
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
R I++ + + W + +++G L Q+L+ A ++ +D + ++ K
Sbjct: 497 RTILE---NDEAWTESQKIQLGAVLFQVLLNKANVR--IDGKQEKAFTYEKFWISKQKVQ 551
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
+ ++ R + ++ D L G T + PM+VPP W + GG+ L + ++
Sbjct: 552 SIVSMNDRLHKMLVSDKLQSFGTTTTRQK------PMIVPPKPWSRPDEGGYKMLRTELL 605
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD 494
R HG Q+E ++ L VF L+ LG WR+N+R+L V R W + L +
Sbjct: 606 RYHGCNMQKEVLQNV---DLSIVFDGLNALGRVPWRINQRVLTVAQRCWDNNIPLGDIPS 662
Query: 495 QEDVPLPEKP------------------NTDDETEIKKWKW-KVKTAKKQNSEKHSQRCD 535
++D PLPE+P + +E + + W K + K++N + S RC
Sbjct: 663 KDDNPLPEEPLHPKRQEQFWEPETPGYESYVEEYRLYRESWNKFRRVKQRNMDLRSLRCS 722
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
LKL A K K+ E ++P+N+DFRGRAYP+ P+L+++GSDLCRGVL+F E PLG G
Sbjct: 723 AMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAKPLGPRG 782
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L+WLK+HLAN G DK+S++ RV F +++L+ + SA+ P G RWW+ EDPFQ LA
Sbjct: 783 LYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLEDPFQGLA 840
Query: 656 TCINLSEALRSPSPESTISHIPVHM 680
TC+ + +A+ +PES + +PVHM
Sbjct: 841 TCLEIIDAIDCGNPESFLCSLPVHM 865
>gi|164655881|ref|XP_001729069.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
gi|159102958|gb|EDP41855.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
Length = 1358
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 289/564 (51%), Gaps = 54/564 (9%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKD 197
L RQ +E A E A K + + E L + K+L W++ L A+ KD
Sbjct: 402 LYERQRWLEHSALEAARKRLEHDTEKLQELGLDSSRFQSKTLQAWMWDWYQKLEVALRKD 461
Query: 198 QATAQDKWKHMTYA-------PYFNNLPADMMAVITMHKLVGL--LMTNAGEVRVVQAAC 248
+ +H + P+ LPA MA+I + +++ + + A ++ +A
Sbjct: 462 IERLGRQTRHAVASSMDAQLYPFLCLLPASKMAMIVILEIMRMQGISGVADGIKTTRALI 521
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE---QEKLKKR-VTS 304
+G+AIE E + L PE ++ Q+ L KR +
Sbjct: 522 TVGKAIETEY---------------------SAVMLNKHPEIFVQARAAQQMLGKRSLID 560
Query: 305 LIKKQKLQ--QVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSP 360
L ++ L+ Q R + + P W Q +VG L+Q L++ A + + D+ G+
Sbjct: 561 LAARRDLKAWQERCREENIETNVPKWTQIIRARVGSFLVQHLLDVATVHRKAYDRDGELW 620
Query: 361 PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNW 418
+ +PAF E ++G++ GVI + +V + L+K R + P ++PMLVPP W
Sbjct: 621 EEDQPAFYSAY-----EYIQGKKLGVIRLNEVVSQRLDKESVRETLHPRHLPMLVPPRPW 675
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILG 477
++ GG++ + + MR + +Q ++ + LE V LD LG+T W VNK +
Sbjct: 676 LSHDSGGYYSMKTSAMRYKDSVEQSSYLRAASENHGLEVVLAGLDVLGNTAWNVNKEVFD 735
Query: 478 VIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDI 536
V+ ++W SG L L E + D+ + K + +++ S HSQRCDI
Sbjct: 736 VVLQIWNSGEALGDLPPAEMTDPEPERPPPDDIKAKGIYLQRLRQWNTIRSSNHSQRCDI 795
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
KL +AR +E FY+PHN+DFRGRAYP+ P+LNH+G+DLCRG+L+F E PLG+ GL
Sbjct: 796 NYKLEIARSFLNER-FYFPHNMDFRGRAYPIPPHLNHIGNDLCRGLLKFAEAKPLGEKGL 854
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WL+IHLAN++ G DK S+ R FT +H DI DSA G+RWWL A+DP+QCLAT
Sbjct: 855 RWLRIHLANVW--GYDKASFAEREQFTIDHEADIRDSATNAYHGKRWWLQADDPWQCLAT 912
Query: 657 CINLSEALRSPS-PESTISHIPVH 679
CI L++A P PE+ S +PVH
Sbjct: 913 CIELTKAWDYPDGPEAFPSQLPVH 936
>gi|410077803|ref|XP_003956483.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
gi|372463067|emb|CCF57348.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
Length = 1284
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 250/486 (51%), Gaps = 45/486 (9%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSF 263
K + YAPY + + M VI + +++ L T +R +A +G+AIE E R +
Sbjct: 424 KRLEYAPYLALVNPEKMCVIAILEILKLNSTGGIIEGMRTARALISVGKAIEMEFRSEQL 483
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
K + + D K E + ++ + K++Q + +
Sbjct: 484 LK--------------NESYIFKDVNKKSPEFKTYLRKAKKSFRSSKIEQAKIV------ 523
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPP-DIRPAFVHTLKSFTKEALKG 381
W Q KVG L+ +L+ A ++ +D + PAF H+ + G
Sbjct: 524 ---WPQSIRAKVGSILVSILIHVAKVEIEGIDPITHQKIFGTAPAFSHSYQYHN-----G 575
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
+ GVI + + L+ G ++ +PMLV P W + GG+++ S ++R+
Sbjct: 576 SKLGVIRIHKSLVQQLD--GERLMASVQPQLLPMLVEPRPWVNWKSGGYYYTQSTLVRSK 633
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--VD 494
+ +Q ++ Q L+ V+ L+ LG T W VN+RI +I ++W GG + +
Sbjct: 634 DSPEQIAYLEAASNVQALDKVYDGLNVLGDTAWTVNRRIFEIISKVWNKGGSFLEIPGIQ 693
Query: 495 QEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
QE LP P D + I +WK K K + S S RCD+ KL +AR E FY+
Sbjct: 694 QESEFLPPPPKNADPSVINEWKNKNKILANKYSSNRSMRCDLNYKLEIARAFLGER-FYF 752
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGRAYP+ P+ NHLG+D+ RG+L F +G LGK GL WLK+HL+NLY GVDK+
Sbjct: 753 PHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGKEGLSWLKVHLSNLY--GVDKV 810
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRR-WWLGAEDPFQCLATCINLSEALRSPSPESTI 673
R F ++HL++I DSA+ PL G+ WW A+ P+Q LATCI L+EAL+ +PE I
Sbjct: 811 PLLERENFIDDHLEEIKDSAENPLNGKYLWWQKADKPWQALATCIELNEALKLENPEDFI 870
Query: 674 SHIPVH 679
SH PVH
Sbjct: 871 SHQPVH 876
>gi|444322297|ref|XP_004181804.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
gi|387514849|emb|CCH62285.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
Length = 1352
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 181/562 (32%), Positives = 276/562 (49%), Gaps = 62/562 (11%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------ 197
RQ +ET + E A + ++ D + AP + W+ + I K+
Sbjct: 423 RQRVLETRSTEAAKERWKHDFMDAKSRGEAPFEKKLNVKLWEWYSQMLPLIKKEVEQANE 482
Query: 198 --QATAQDKWK----HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQ 249
Q + DK K YAPY N + + M VIT+ +L+ L T +R +A
Sbjct: 483 LLQDSLIDKRKAGGISSDYAPYLNLVDPEKMCVITILELLKLNSTGGVFEGMRTARAVIS 542
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL-IKK 308
+G+AIE E R + + N + ++ P K KKR+ I+K
Sbjct: 543 VGKAIELEFRSEQLIR----------NEMHTFKNVSTKPHVFKKYVWSAKKRLRDHNIEK 592
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR---- 364
K++ W Q A ++G +I L+ A V+ G P +
Sbjct: 593 SKIE--------------WPQAARAQIGSIMISTLLHVA----KVNVRGHDPKTNKYVYG 634
Query: 365 --PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRG 420
PAF H+ + G + GV++ + K L E+ + MPM+V P W
Sbjct: 635 ELPAFSHSYQYHN-----GAKIGVLKIHKSLIKQLNGERLATSVQPQQMPMIVKPRKWVS 689
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP-VFQALDTLGSTKWRVNKRILGVI 479
+N GG+ + S ++RT + +Q +K L P ++ L+ +G T W VN+++ V+
Sbjct: 690 WNSGGYHYSQSILIRTRDSPEQVAYLKAVSEENLIPTIYSGLNVIGLTGWTVNRKVFNVL 749
Query: 480 DRMWASGGCLAGLVDQED--VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
+W +G + +D V LP P+ + E+++WK K K + S S RCD
Sbjct: 750 SEVWNTGKQFLDIPGIQDDMVVLPPLPSNAEPEEVREWKLKNKEIANKISSDRSVRCDSN 809
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+D+ RG+L F +G LG GL
Sbjct: 810 YKLEIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGRRLGPQGLK 868
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLK+HLANL+ G DK S + R+AF H++D+ DSA+ PL+G+ WW A+ P+Q LATC
Sbjct: 869 WLKVHLANLF--GYDKASLDDRIAFANQHIEDLKDSAEHPLDGKGWWQSADKPWQALATC 926
Query: 658 INLSEALRSPSPESTISHIPVH 679
+ L+EA + +PE ISH PVH
Sbjct: 927 MELNEAFKLENPEDFISHQPVH 948
>gi|401625948|gb|EJS43925.1| rpo41p [Saccharomyces arboricola H-6]
Length = 1351
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 252/484 (52%), Gaps = 46/484 (9%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQT--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPP-VDQLGDSPPDIR-PAFVHTLKSFTKEALKGRR 383
W Q+ ++G LI +L+ A + VD + + PAF H + G +
Sbjct: 592 -WPQNIRAQIGSVLISMLIHVAKVSVQGVDPITKAKVHGEAPAFAHGYQYHN-----GSK 645
Query: 384 YGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
GV++ + L G +I +PMLV P +W + GG+ + S ++RT +
Sbjct: 646 LGVLKIHKTLIHQL--NGERLIASVQPQLLPMLVEPKSWINWRSGGYHYTQSTLLRTKDS 703
Query: 440 RQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS-GGCL--AGLVDQ 495
+Q +K + ++ V+ L+ LG+T W VN+++ V+ ++W G L G D+
Sbjct: 704 PEQVAYLKAASENGDIDRVYDGLNVLGNTPWTVNRKVFDVVSQVWNKREGFLDIPGAQDE 763
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+P P P D + ++ WK +VKT + S S RCD KL +AR E+ Y+P
Sbjct: 764 MVLP-PAPPRNSDPSILRTWKLEVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFP 821
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYP+ P+ NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G DKL
Sbjct: 822 HNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLR 879
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
E RV+FTE+HL+DI DSA+ PL G+ WW A+ P+Q LATC L+E ++ +PE ISH
Sbjct: 880 LEDRVSFTESHLEDIKDSAENPLTGQGWWKTADKPWQALATCFELNEVMKMDNPEDFISH 939
Query: 676 IPVH 679
P+H
Sbjct: 940 QPIH 943
>gi|402220117|gb|EJU00189.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 988
Score = 265 bits (676), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 179/556 (32%), Positives = 284/556 (51%), Gaps = 50/556 (8%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAP-NLPY--VKSLFLGWFEPLRDAIAKDQAT 200
RQ +E A+ AA+ ++ +M +A N + +K W++ L++ + + T
Sbjct: 22 RQRLMEESAYMVAAQRWRHQAEEMTHHNVAGWNTQHMKLKKWMWNWYQALKERLDNEIPT 81
Query: 201 AQDKWKHM---------TYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIG 251
+++ K P+ L + MA +T+ +L+ ++ G VR + A +G
Sbjct: 82 LEEEEKLAQRRKPTDGDAIGPFLRLLSTEKMATMTISELLRYGTSDGG-VRTARTAITLG 140
Query: 252 EAIENEARIQ-SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
+E E + + + ++ + EG L I++Q + + T I
Sbjct: 141 RVVEQEYNAEVALAQRSRGPDPVVLTSEGSLTELAA-----IRQQARDSEDFTMAIPPDW 195
Query: 311 LQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHT 370
Q +RG V G + +A++ V + I+P G+ + +PAF H
Sbjct: 196 TQVIRGRVGGFL------LNAVIDVAT------ITRRGIRPST---GEEVSEEQPAFAHC 240
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
E L GR+ G+I+ +P + + L E + +PML+PP W RG + +
Sbjct: 241 Y-----EFLHGRKIGLIKFNPELTEQLSSEPIKDALHPRQLPMLIPPRPWIDVERGAYMY 295
Query: 429 LPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ VMR + +Q ++ + LE ++ ALD LGST W +N+ I V+ +W SG
Sbjct: 296 SRTSVMRYKDSLEQSSFLRSASSAGHLESMYAALDVLGSTPWTINRPIFDVVIAVWNSGK 355
Query: 488 CLAGL----VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
A + ++ ED P+ TD + + + + + T+ ++ E HS RCD KL +A
Sbjct: 356 QFAKIPPAGLEGEDPVKPDNYETDPKAK-RDFVRAMSTSIQKRHENHSMRCDTNYKLEIA 414
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R E FY+PHN+DFRGRAYP+ P LNH+G DLCRG+L F + LG+ GL WLKIH
Sbjct: 415 RAFLGER-FYFPHNVDFRGRAYPVPPNLNHMGDDLCRGLLTFADKKALGERGLRWLKIHA 473
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN + G DK S+E RV +T HLD+I+DSA +PL+G+RWWL A+DP+Q LA+CI L A
Sbjct: 474 ANKF--GYDKASFEERVTWTMEHLDEIYDSAKKPLDGQRWWLKADDPWQFLASCIELHNA 531
Query: 664 LRSPSPESTISHIPVH 679
L SP+P S +PVH
Sbjct: 532 LESPNPAEFESSLPVH 547
>gi|213406824|ref|XP_002174183.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
gi|212002230|gb|EEB07890.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
Length = 1169
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 176/560 (31%), Positives = 282/560 (50%), Gaps = 51/560 (9%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKDQAT 200
RQ +E +A E + E++ ++ + N P+ +SL W+E L I ++
Sbjct: 294 RQRLMEKKALESSIAEWRHSYNEILRR--GENPPHSRSLNALLYVWYEKLEALIQEEFRQ 351
Query: 201 AQDK-------WKHMT---YAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAAC 248
+D +K T YA Y L +A IT+ +++ + VR A
Sbjct: 352 IEDSENNKASPYKSRTRAEYAQYLKLLSPSKLAAITVLEMLTFVTNKRYCTGVRSTFALM 411
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+G A E E +F +K + NL P + D +KL + S +KK
Sbjct: 412 SVGRAFEKE-----YFSEQLQKIEAEGNL-----PKSVDSKKLFSS----PRLFNSFVKK 457
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
+ + GIV+ + +PW + LVKV + LL+ +A I+ D D P+ +
Sbjct: 458 IRDNEDNGIVQSSL-YQPWSPNILVKVASVTVSLLINSAKIR---DSALD--PETKSTVF 511
Query: 369 HTLKSFTK--EALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRG 424
+F L GR+ GVI P++ L E +G H+ +PMLV P W +N G
Sbjct: 512 QDSSAFQHGYRYLAGRKVGVIVAHPVLYDILASELSGAHLPPYRLPMLVKPRPWLMWNSG 571
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
G+++ V+R + +Q +K S QL+ + + L LG+ W+VN+++ ++ ++W
Sbjct: 572 GYYYSSESVLRFKESHEQLLYLKAASDSGQLKDLLEGLTALGNVGWKVNRKVYDMLVKIW 631
Query: 484 ASGGCLAGLVDQEDV----PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
+G + +PEK + D + +W +K + +HSQRC+
Sbjct: 632 NTGESFLSIPSANTTLDIQEMPEK--SIDPSARAEWLRMLKERSLDFASQHSQRCEFNYT 689
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L +A+ E FY+PHN+DFRGRAYP+ +L+H+ SD CR +L F EG PLG+ G WL
Sbjct: 690 LEIAKAFL-HETFYFPHNVDFRGRAYPIPSHLHHVNSDFCRSLLIFAEGKPLGEEGFQWL 748
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
K+ LANL+ G +K + + R+ F +NHL DIF+S D+PL+G ++W A+DPFQ LA C
Sbjct: 749 KVQLANLF--GKNKSTIQERIDFVDNHLQDIFNSVDKPLDGEQFWTKADDPFQALAVCFE 806
Query: 660 LSEALRSPSPESTISHIPVH 679
+++A+RS P S ISH+PV
Sbjct: 807 IADAIRSGDPSSFISHVPVQ 826
>gi|409082678|gb|EKM83036.1| hypothetical protein AGABI1DRAFT_69188 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 967
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 257/482 (53%), Gaps = 40/482 (8%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + + + +++IT+ +++ L ++ A ++ +A +G+A+E E + Q K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKAQMI---KK 146
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
N D+ G + L + K V ++G S W
Sbjct: 147 PDNVADSKSAGGN----------------LYSHAAYKNLRDKRLAVSKEIEGEERSLGWS 190
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
Q K+G L+ LME A ++ + G+ +++PAF H E L+G R GVI
Sbjct: 191 QVTRSKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSRLGVI 245
Query: 388 ECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
+P+V + L + + P ++PMLV P W +N GG+ + + VMR + +Q+
Sbjct: 246 RLNPVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIY 305
Query: 446 IK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEK 503
+K + Q+E V+ LD L ST W++NK++ V+ R W SG L + D P P +
Sbjct: 306 LKEASKHGQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPEPVQ 365
Query: 504 PNTDDETEIKKWKWKVKTAKKQNSEK---HSQRCDIELKLSVARKMKDEEGFYYPHNLDF 560
P ++ ++KK + + K N K HS RC + KL +AR ++E FY+PHNLDF
Sbjct: 366 PQVEELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDF 424
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGRAYP+ +LNH+G DLCRG+L F E PLG GL WLKIH+ANLY G DK +++ RV
Sbjct: 425 RGRAYPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRV 482
Query: 621 AFTENHLDDIFDSADRPLEG---RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
+ + HLD I+ +A R L+ + WWL A DP+Q LA I L +AL S +PE+ S +P
Sbjct: 483 NWVDEHLDQIYQTATRLLDDPATKAWWLEASDPWQFLAASIELHDALESGNPEAFESSLP 542
Query: 678 VH 679
VH
Sbjct: 543 VH 544
>gi|403216073|emb|CCK70571.1| hypothetical protein KNAG_0E03120 [Kazachstania naganishii CBS
8797]
Length = 1276
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 250/485 (51%), Gaps = 52/485 (10%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
YAPY + + M VIT+ +++ L T +R +A +G+A+E E R + K+
Sbjct: 421 YAPYLTLVTPEKMCVITILEILKLNSTGGITEGMRTARAVISVGQAVEMEFRSEQLLKNE 480
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
+ N + + + + E I+KQKL W
Sbjct: 481 SRMFKEVNKKSNTFKKIVRSAKSAFRAME---------IEKQKLL--------------W 517
Query: 328 GQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
Q KVG L+ +L+ A + P+ + + PAF H+ + G +
Sbjct: 518 PQAIRAKVGSILVSMLIRIADVTVEGTDPITK--EKVYGKTPAFSHSYQYHN-----GVK 570
Query: 384 YGVIECDPLVRKGL--EKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G+++ + K L + G ++ +PMLV P W+ + GG+F+ S ++R+
Sbjct: 571 LGIVK----IHKSLINQLNGERLVASVQPQLLPMLVKPREWKNWKSGGYFYSQSTLVRSR 626
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
+Q ++ S ++ V+ L+ LG+T W VN+ I V+ ++W G + +
Sbjct: 627 DCPEQLAYLEAASNSNAIDKVYDGLNVLGNTAWTVNRNIFNVVSKVWNEGKPFLEIPGTQ 686
Query: 497 DVP--LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
++ LP P D I +W+ K + + S S RCD+ KL +AR E+ FY+
Sbjct: 687 EILELLPPPPKGSDPAVINEWRTKNRYLSNEYSANRSMRCDLNYKLEIARAFLGEK-FYF 745
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F +G LG GL WLK+HL+NLY GVDK+
Sbjct: 746 PHNVDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKKLGSLGLKWLKVHLSNLY--GVDKV 803
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S + RVAF E+ LD++ DSA+ PL GR WW A+ P+Q LATC+ L+EAL+ +PE +S
Sbjct: 804 SLDDRVAFIESQLDEVKDSAEDPLNGRGWWKKADKPWQALATCMELNEALKLDNPEDFVS 863
Query: 675 HIPVH 679
H PVH
Sbjct: 864 HQPVH 868
>gi|449541840|gb|EMD32822.1| hypothetical protein CERSUDRAFT_57977 [Ceriporiopsis subvermispora
B]
Length = 966
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 261/489 (53%), Gaps = 49/489 (10%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKS 266
+ +P+ L + +++IT+ +L+ L T + ++ +A +G A+E E + Q
Sbjct: 85 SLSPFLTLLKPEKLSLITILELMNLHGTGGVSDGMKTARALLGVGRAVELEHKAQM---- 140
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHVD 323
KK N + Q + ++ TSL + + LQ R + +++
Sbjct: 141 CKKNN-------------------IAIPQSQFARQDTSLFTRLGYRDLQARRVAARKYME 181
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSP-PDIRPAFVHTLKSFTK 376
+ W Q VKVG L+ LM+ A I + D G+ + +PAF H+
Sbjct: 182 DAEDWTSDWSQLVRVKVGGFLVDCLMDVATITRSMTDPNGEEIYSEEQPAFFHSY----- 236
Query: 377 EALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G + GVI+ +P+V + + K ++ + P ++PMLV P W G ++GG+ + + M
Sbjct: 237 EYVRGHKLGVIKLNPVVAERMAKDRIKNTLHPRHLPMLVKPKPWLGPDQGGYMYNRTTAM 296
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
R + +Q ++ + LE V+ ALD LGST W +N+RI ++ +W SG + +
Sbjct: 297 RYKDSVEQANYLRHASAAGNLELVYAALDVLGSTPWNINRRIFDIVLTVWNSGKRMCKMP 356
Query: 494 DQ-EDVPLPEKPNT--DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
D+P PE+P D+ + + K +Q + HS RC + K+ +AR +
Sbjct: 357 PVVSDIPEPERPENYETDQQARAIYLQRHKLYAQQKANNHSDRCSVNYKIEIARAFLGDT 416
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
+ PHN+DFRGRAYP+ P+L+H+G DL RG+L F E PLG+ G WLK+HLANLY G
Sbjct: 417 -IFMPHNVDFRGRAYPVPPHLSHIGDDLSRGLLLFGEAKPLGERGFWWLKVHLANLY--G 473
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK S+ R+AF E HLDDIFDS D PL+GR WW A+DP+QCLATC+ L A+ S P
Sbjct: 474 YDKGSFPERIAFVEAHLDDIFDSVDHPLDGRMWWTKADDPWQCLATCMELKAAIESGDPH 533
Query: 671 STISHIPVH 679
+P+H
Sbjct: 534 KYECALPIH 542
>gi|255719121|ref|XP_002555841.1| KLTH0G18744p [Lachancea thermotolerans]
gi|238937225|emb|CAR25404.1| KLTH0G18744p [Lachancea thermotolerans CBS 6340]
Length = 1289
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 181/568 (31%), Positives = 283/568 (49%), Gaps = 68/568 (11%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG---WF--------EPLRD 192
RQ ++E A + A + ++ D E K +L K L + WF E +R
Sbjct: 353 RQHQLENRATDAAKERWRH---DFEEAKSRGDLSIQKKLNIKLWEWFNLMLPLVKEEVRR 409
Query: 193 AIAKDQATAQD----------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GE 240
A TAQD Y PY + + M VIT+ +L+ L T
Sbjct: 410 CAAVANKTAQDTSLSPQEKKQNKARQEYGPYLTLVDPEKMCVITILELLKLNSTGGIIEG 469
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK 300
+R +A +G+AIE E R + K + + D K E + + +
Sbjct: 470 MRTARAVISVGKAIEMEFRAEMLLK--------------NESHVFKDVNKKSHEFKLMVQ 515
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP-VDQLGDS 359
R + + K+++ + + W Q+A K+G LI +L+ A ++ VD + +
Sbjct: 516 RARATFRSIKIEESKVL---------WPQEARAKIGSILISMLIHVAKVKVEGVDPVTNE 566
Query: 360 P-PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVP 414
PAF H + G + GV++ + L G ++ +PMLV
Sbjct: 567 KIKGEAPAFSHGYQYHN-----GSKLGVLKIHRSLIHQL--NGERLVAAVQPQLLPMLVK 619
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNK 473
P W +N GG+++ S ++R+ + +Q +K ++ ++ V++ L+ LG T W VN+
Sbjct: 620 PRAWNSWNSGGYYYTQSTLIRSKDSPEQVAYLKAVSDAGAIDNVYRGLNVLGETPWTVNR 679
Query: 474 RILGVIDRMWASGGCLAGLVD-QEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
++ V+ ++W SG + QE + L P+ P D + ++WK K K + S S
Sbjct: 680 KMFNVMSQVWNSGKPFLDIPGIQEKLTLTPQPPRDADPSVHREWKLKNKELANEFSGNRS 739
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
RCD KL +AR E+ FY+PHNLDFRGRAYP+ P+ NHLG+D+ RG++ F G L
Sbjct: 740 ARCDANYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLMTFWHGKRL 798
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G GL WLK+HL+NL+ G DK E RV F E+H+DDI DSA+ PL+G+ WW A+ P+
Sbjct: 799 GSTGLRWLKVHLSNLF--GFDKAPLEDRVRFAEDHIDDIRDSAEHPLDGKCWWKEADKPW 856
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
Q LATC+ L+EAL+ +P+ +SH PVH
Sbjct: 857 QALATCMELNEALKMSNPDDFVSHQPVH 884
>gi|426200546|gb|EKV50470.1| hypothetical protein AGABI2DRAFT_200200 [Agaricus bisporus var.
bisporus H97]
Length = 967
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 257/482 (53%), Gaps = 40/482 (8%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + + + +++IT+ +++ L ++ A ++ +A +G+A+E E + Q K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKAQMI---KK 146
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
N D+ G + L + K V ++G S W
Sbjct: 147 LDNVADSKSAGGN----------------LYSHAAYKNLRDKRLAVSKEIEGEERSLGWS 190
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
Q K+G L+ LME A ++ + G+ +++PAF H E L+G R GVI
Sbjct: 191 QVTRSKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSRLGVI 245
Query: 388 ECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
+P+V + L + + P ++PMLV P W +N GG+ + + VMR + +Q+
Sbjct: 246 RLNPVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIY 305
Query: 446 IK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEK 503
+K + Q+E V+ LD L ST W++NK++ V+ R W SG L + D P P +
Sbjct: 306 LKEASKHGQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPEPVQ 365
Query: 504 PNTDDETEIKKWKWKVKTAKKQNSEK---HSQRCDIELKLSVARKMKDEEGFYYPHNLDF 560
P ++ ++KK + + K N K HS RC + KL +AR ++E FY+PHNLDF
Sbjct: 366 PQVEELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDF 424
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGRAYP+ +LNH+G DLCRG+L F E PLG GL WLKIH+ANLY G DK +++ RV
Sbjct: 425 RGRAYPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRV 482
Query: 621 AFTENHLDDIFDSADRPLEG---RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
+ + HLD I+ +A R L+ + WWL A DP+Q LA I L +AL S +PE+ S +P
Sbjct: 483 NWVDEHLDQIYQTATRLLDDPATKAWWLEASDPWQFLAASIELHDALESGNPEAFESSLP 542
Query: 678 VH 679
VH
Sbjct: 543 VH 544
>gi|430811134|emb|CCJ31388.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1054
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 195/327 (59%), Gaps = 12/327 (3%)
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL-EKTGRHMIIP-YMPMLVP 414
GD+ PAF HT + KGR+ GVI+ + V K L + R I P +PMLV
Sbjct: 366 GDTISQKAPAFYHTY-----QYQKGRKLGVIKLNDQVMKQLGSQPLRGNIHPRLLPMLVE 420
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNK 473
P W ++ GG++ S VMR+ + +Q + +K+ + R+ L+ +F+ LD LGST W +N
Sbjct: 421 PKPWISWDSGGYYLSKSTVMRSRDSIEQIQYLKIASERNNLKSIFEGLDVLGSTAWAINI 480
Query: 474 RILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ V+ +W SG AG+ E ++ P +P + D + W+ + + + K S
Sbjct: 481 PVFNVVIEVWNSGLEFAGIPPAESNIAFPPRPTSKDPADKISWQIQCRQIARDAQNKQSI 540
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCDI KL +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG+DLCRG+L F E +G
Sbjct: 541 RCDINYKLEIARAFLHEK-MYFPHNLDFRGRAYPIPPHFNHLGNDLCRGLLTFHEAKEIG 599
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
++GL WLKIHLAN+ G DK S+ R AFT +L +IFDSAD PL+G WWL +DP+Q
Sbjct: 600 ESGLRWLKIHLANI--CGFDKESFLEREAFTVENLKNIFDSADNPLKGSGWWLKFDDPWQ 657
Query: 653 CLATCINLSEALRSPSPESTISHIPVH 679
LA C L+ ALR P P S +P+H
Sbjct: 658 TLAACFELTAALRFPDPHKFKSRLPIH 684
>gi|328869087|gb|EGG17465.1| DNA-dependent RNA polymerase [Dictyostelium fasciculatum]
Length = 1078
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 207/353 (58%), Gaps = 23/353 (6%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD--- 390
++G +++ +ME+ +I Q+ D + PAF + ++G R +
Sbjct: 446 RIGTFILRCIMESCFINKY--QINDGESEQVPAFYIDYR-----FVRGVRVSSLHLHQNV 498
Query: 391 -PLVRKG--LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
L++ G L + + +PM+V P W N G + P+++MRT+G++ Q +I
Sbjct: 499 LSLIQDGHDLREVANARL---LPMVVTPEPWDSPNNGCYLHYPTFIMRTNGSKLQTSSI- 554
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD 507
+ L +++ L+ LG W +N+ +L +I W SGG + L + D LP
Sbjct: 555 --ISADLSKIYEGLNILGEVPWNINRPVLDIILAAWESGGGIGDLPSRFDYELPLAAEYS 612
Query: 508 DETEIKKWKWK-VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 566
+ E +K K VK K+ N + HS RCD+ KL V ++++ E FY+PHN+DFRGR+YP
Sbjct: 613 ESAEQRKKHAKLVKKVKQLNHDLHSLRCDLSYKLDVGKQLR-EHDFYFPHNVDFRGRSYP 671
Query: 567 MHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
+ P+LNHLGSD CR +L F E PLG GL WLK+HLANL GVDK+S++ R+AF ++H
Sbjct: 672 IPPHLNHLGSDFCRAMLTFAEKKPLGARGLMWLKVHLANL--SGVDKVSFDDRIAFVDSH 729
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+ D++DSAD PL G RWWL A+ P+Q LATCI L+ A+RS P + +S +P+H
Sbjct: 730 MADVYDSADNPLNGARWWLAADKPWQALATCIELANAVRSGDPANFMSSLPLH 782
>gi|254566053|ref|XP_002490137.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
gi|238029933|emb|CAY67856.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
Length = 1321
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 165/494 (33%), Positives = 256/494 (51%), Gaps = 52/494 (10%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFK 265
+ YA Y + D M+ +T+ +L+ ++ T N +R +A +G+A+E E R +
Sbjct: 450 LEYANYLILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLL- 508
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHV 322
+K+ + N + +K ++ K+ VT+ K + LQQ R +
Sbjct: 509 -SKEIDVFKNF-------------RNMKNSKEFKRLVTTGSKNTFTKLLQQSRS---ASI 551
Query: 323 DSK------PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHT 370
D++ W + K+G LI LL+++A I D G P PA H
Sbjct: 552 DTELEETLFNWPNEIKAKIGSVLISLLLQSAKI----DVQGKDPITNEEVHGQVPAIFHQ 607
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFF 428
+ G + G+++ L K + Y+PMLV P W +N GG+++
Sbjct: 608 Y-----QYANGNKIGILKFHHDFTSKLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYY 662
Query: 429 LPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ ++RT + +Q +K + + ++ V+Q L LG+T W +N I VI +W SG
Sbjct: 663 TETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGN 722
Query: 488 CLAGLVDQEDVPL--PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
+ +D P+ P+ P+ D + I+ WK++V+ + S S RCD KL AR
Sbjct: 723 QFLDIPAIQDSPIYPPQPPSDADPSVIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARG 782
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
E Y+PHNLDFRGRAYP+ P+LNHLG+D+ RG+L F EG LG+ GL WLKIHLAN
Sbjct: 783 FIGER-IYFPHNLDFRGRAYPISPHLNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLAN 841
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LY G+DK + + R FT+ + +I DSA +PL G+ WW +E P+Q L+ CI L+EA +
Sbjct: 842 LY--GLDKETLDKREQFTDLNKANIIDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWK 899
Query: 666 SPSPESTISHIPVH 679
+P +SHIPVH
Sbjct: 900 LKNPNMFVSHIPVH 913
>gi|328350537|emb|CCA36937.1| DNA-directed RNA polymerase,mitochondrial [Komagataella pastoris
CBS 7435]
Length = 1329
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 165/494 (33%), Positives = 256/494 (51%), Gaps = 52/494 (10%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFK 265
+ YA Y + D M+ +T+ +L+ ++ T N +R +A +G+A+E E R +
Sbjct: 458 LEYANYLILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLL- 516
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHV 322
+K+ + N + +K ++ K+ VT+ K + LQQ R +
Sbjct: 517 -SKEIDVFKNF-------------RNMKNSKEFKRLVTTGSKNTFTKLLQQSRS---ASI 559
Query: 323 DSK------PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHT 370
D++ W + K+G LI LL+++A I D G P PA H
Sbjct: 560 DTELEETLFNWPNEIKAKIGSVLISLLLQSAKI----DVQGKDPITNEEVHGQVPAIFHQ 615
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFF 428
+ G + G+++ L K + Y+PMLV P W +N GG+++
Sbjct: 616 Y-----QYANGNKIGILKFHHDFTSKLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYY 670
Query: 429 LPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ ++RT + +Q +K + + ++ V+Q L LG+T W +N I VI +W SG
Sbjct: 671 TETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGN 730
Query: 488 CLAGLVDQEDVPL--PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
+ +D P+ P+ P+ D + I+ WK++V+ + S S RCD KL AR
Sbjct: 731 QFLDIPAIQDSPIYPPQPPSDADPSVIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARG 790
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
E Y+PHNLDFRGRAYP+ P+LNHLG+D+ RG+L F EG LG+ GL WLKIHLAN
Sbjct: 791 FIGER-IYFPHNLDFRGRAYPISPHLNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLAN 849
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LY G+DK + + R FT+ + +I DSA +PL G+ WW +E P+Q L+ CI L+EA +
Sbjct: 850 LY--GLDKETLDKREQFTDLNKANIIDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWK 907
Query: 666 SPSPESTISHIPVH 679
+P +SHIPVH
Sbjct: 908 LKNPNMFVSHIPVH 921
>gi|299740865|ref|XP_001834061.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404445|gb|EAU87753.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1341
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 173/519 (33%), Positives = 276/519 (53%), Gaps = 42/519 (8%)
Query: 179 VKSLFLGWFEPLRDAIA-------KDQATAQDKWK-HMTYAPYFNNLPADMMAVITMHKL 230
++ + GW E L+ +A K++A + + K APY + + +++IT+ +
Sbjct: 383 LQEMMYGWHEKLKKRVAELVSQIEKEEAAGKYRLKPKAELAPYLALVQPERLSMITILEA 442
Query: 231 VGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+ L + A ++ +A IG+A+E E + + +KN P + P
Sbjct: 443 MRLCGSGGVASGMKSTRALVSIGKAVEMEYKAR-----VCRKNRI-------VIPDVSRP 490
Query: 289 EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
+ Q+ S + +++L + + G + PW Q ++G L+++LM+ A
Sbjct: 491 DT----QDVFSSLGYSNLHERRLAAAKQMTAGESWTAPWSQTTRAQIGALLMEVLMQVAT 546
Query: 349 I-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEK-TGRHMI 405
+ Q V++ G+ + PAF H+ E ++G + GVI+ + V + + K + I
Sbjct: 547 VPQTAVNEETGEVLTEEHPAFFHSY-----EYMRGTKLGVIKVNHAVSERIAKDVLKGTI 601
Query: 406 IP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR-SQLEPVFQALDT 463
P ++PML PP W N GG+ + + +MR +Q + + R +E V L+
Sbjct: 602 HPRHLPMLHPPKPWVRANEGGYLYTKTPLMRYKECVEQEKYLHEAIRKGNMEAVMAGLNV 661
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LG T W++NK+I V+ +W SG + L + +P + E +++ ++ K
Sbjct: 662 LGRTPWKINKKIFDVVLTIWNSGEGVGKLPPAKLDEPEPQPPPEGENDVRARAIYLQHHK 721
Query: 524 K--QN-SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
+ QN + HS+RC K+ +AR DE Y+PHNLDFRGRAYP+ P+LNH+G DL R
Sbjct: 722 QWSQNVANNHSERCSTNYKIEIARAFLDET-IYFPHNLDFRGRAYPLPPHLNHIGDDLSR 780
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
G+L F+E PLG+ GL W+KIHLANLY G DK ++ RV + + LDDI DSA PL G
Sbjct: 781 GLLLFQEAKPLGERGLRWMKIHLANLY--GFDKADFDERVHWVHDRLDDIKDSAKNPLTG 838
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
R WW A+DPFQCLATC+ L+EAL SP P + S +PVH
Sbjct: 839 RGWWKKADDPFQCLATCMELTEALESPDPLAYKSCLPVH 877
>gi|429848594|gb|ELA24058.1| DNA-directed RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1383
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 206/363 (56%), Gaps = 19/363 (5%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
PW VK+G L+ L+ETA I + PV Q +PAF H L+ +G
Sbjct: 541 PWPVAVKVKLGAMLLTALLETAKIKVVQEQPVTQTLIH--QYQPAFSHALR-----LKRG 593
Query: 382 RRYGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
++ G+I + + ++ R + ++PM+VPP W +N+GG S V+R G
Sbjct: 594 KKIGMILLNKTLVTIMKSEPRGDYLAKHLPMVVPPEPWTDFNKGGFLESSSAVVRVKQGD 653
Query: 440 RQQRETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QED 497
++Q+ + R ++ VF+ LD LG T WR+N + V+ W +G A + D
Sbjct: 654 KEQKLYAEAAITRGDMDQVFKGLDILGKTAWRINTPVFNVMLEAWNTGKAFANFPELSPD 713
Query: 498 VPLPEKPN-TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+ P +P +DD + W VK + + HSQRC + +L +AR +++ FY+PH
Sbjct: 714 IAYPPEPELSDDPMARRNWIRTVKAIENKKGALHSQRCFMNFQLEIARAFRNQ-SFYFPH 772
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ YLNH+G+D RG+L F +G LG+ GL WLK+HLAN+Y G DK S
Sbjct: 773 NVDFRGRAYPLPTYLNHMGADHVRGLLRFAKGKELGERGLQWLKVHLANVY--GFDKASL 830
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R +F +L +IFDSA+ PL G WWL AEDP+QCLATC L AL SP P +SH+
Sbjct: 831 KDRESFAMENLVNIFDSANNPLTGNMWWLKAEDPWQCLATCYELKAALESPEPTKYVSHL 890
Query: 677 PVH 679
PVH
Sbjct: 891 PVH 893
>gi|50306641|ref|XP_453294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642428|emb|CAH00390.1| KLLA0D05247p [Kluyveromyces lactis]
Length = 1263
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/509 (32%), Positives = 266/509 (52%), Gaps = 61/509 (11%)
Query: 191 RDAIAKDQ-ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQ 245
+D + K+Q A + + Y PY + + M VIT+ +L+ L ++G V R +
Sbjct: 390 QDLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKL--QSSGGVTEGMRTAR 447
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A +G +IE E R SE L K+ KE K
Sbjct: 448 AVLSVGRSIEMEFR---------------------SEKLLRSENKMFKEVNKRSHEFKMF 486
Query: 306 IKKQKLQQVRGIVKGHVDSK--PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---L 356
++ K + HV+ W D K+G LI +L+ + + P+ + +
Sbjct: 487 VQNAKT----ALRNMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVV 542
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVP 414
G++P AF HT + + G + G+++ + L E+ ++ ++PMLV
Sbjct: 543 GEAP-----AFCHTFQYRS-----GTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVR 592
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNK 473
P W +N GG+ + S ++R+ + +Q IK ++ + ++ V++ L+ LG+T W +N+
Sbjct: 593 PRPWTNWNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINE 652
Query: 474 RILGVIDRMWASGGCLAGL---VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
++ ++ +W +G + +D + P P+ ++D +K+W+ K + +
Sbjct: 653 KLFNIVSEVWNTGEGFLDIPPVLDNFEFP-PQPARSEDPLILKEWRNKCRQMSNEFKGFK 711
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S RCD KL +AR E+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ R +L F G
Sbjct: 712 SYRCDSNYKLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKK 770
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
LG +GL WLKIHLANLY G+DK S+E RV F + HL +I +SA+ PL+G RWW A+ P
Sbjct: 771 LGTSGLQWLKIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKP 828
Query: 651 FQCLATCINLSEALRSPSPESTISHIPVH 679
+Q LATCI L+EAL+ +PE+ ISH PVH
Sbjct: 829 WQFLATCIELNEALKLDNPENFISHQPVH 857
>gi|367011305|ref|XP_003680153.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
gi|359747812|emb|CCE90942.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
Length = 1321
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 196/669 (29%), Positives = 320/669 (47%), Gaps = 78/669 (11%)
Query: 30 KITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNFT--QSIYPFGVLTSRSYASAAE 87
K+T+++T + LLG + Q+ N+ Q +F +++ S +
Sbjct: 306 KLTAVDTLGMRVVRHTLLGL---NLNEQQRQNIAQFHFKADENLLNLDQKKSIDFFEVYR 362
Query: 88 AIASESELSGSEEVQELIDQFNEKGVSILDSSSM-LDKQPKKKGTGMGTAKYYMLKRRQI 146
++ S++E S E ++ +DQFN++ L+S + K+ K A+ + +++
Sbjct: 363 SLKSDAERS---EFEKSLDQFNQERQRALESRATDAAKERWKHDFEEARARGDISIEKRL 419
Query: 147 KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK 206
++ W A C + ++ P + L K T QD
Sbjct: 420 NVKLWKWYNAMLPLLKEEVKFCSEVMSGKPPSRR---------LSSGEIKQNKTRQD--- 467
Query: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFF 264
Y Y + + + M VIT+ +L+ L T +R +A +G+AIE E R +
Sbjct: 468 ---YGAYLSLVDPEKMCVITILELLKLNSTGGVIEGMRTARAVIAVGKAIEMEFRSEQLL 524
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
KS + + D + E +K +R + + K+++ + +
Sbjct: 525 KSELQ--------------IFKDVNRKSHEFKKYVQRAKNSFRSIKIEESKVV------- 563
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHTLKSFTKEA 378
W Q A K+G +I +L+ A VD G P + PAF H +
Sbjct: 564 --WPQAARAKIGSIMISMLIHVA----KVDLEGIDPVTKQKVHGEAPAFSHGYQYHN--- 614
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + L G ++ +PMLV P W+ +N GG+++ S ++
Sbjct: 615 --GSKLGVLKIHRSLIHQL--NGERLVASVQPQLLPMLVKPRPWKSWNSGGYYYTQSSLI 670
Query: 435 RTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC---LA 490
R+ + +Q +K + ++ V+Q L+ LG T W VN+R+ V+ +W SG +
Sbjct: 671 RSKDSPEQMAYLKAVSNAGAIDTVYQGLNVLGETAWTVNRRVFDVMSEVWNSGKDFLEIP 730
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
G+ ++ D+ LP P D + ++WK K K + S S RCD KL +AR E+
Sbjct: 731 GIQEKLDL-LPAPPRESDPSVHREWKLKNKEIANKFSSNRSVRCDSNYKLEIARAFLGEK 789
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
FY+PHNLDFRGRAYP+ P+ NHLG+D+ RG+L F +G LG GL WLK+HL+NL+ G
Sbjct: 790 -FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGPRGLKWLKVHLSNLF--G 846
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK R+A+ E HL D+ SA+ PL G WW+ A+ P+Q LATCI ++EA + P+PE
Sbjct: 847 FDKAPLADRIAYAEAHLKDVKRSAEDPLAGDGWWMKADKPWQALATCIEINEAYKLPNPE 906
Query: 671 STISHIPVH 679
ISH PVH
Sbjct: 907 DFISHQPVH 915
>gi|323456523|gb|EGB12390.1| hypothetical protein AURANDRAFT_20280 [Aureococcus anophagefferens]
Length = 902
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 178/552 (32%), Positives = 260/552 (47%), Gaps = 66/552 (11%)
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKH---MTYAP 212
A +Y+ ++ D+ L V+ L W+EPL I ++ D K Y P
Sbjct: 88 ACADYEAMIEDLLSLGKGAELKPVQRLMAQWYEPLVTRITAERKATLDGDKGGDLRIYGP 147
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAG-EVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
LP + +AV+TMH +GL + + + +GE ++ EAR+ +++
Sbjct: 148 LLLLLPPEQLAVLTMHTTIGLCLKHGPLGAKYSNLVTTLGETVQAEARVLKLRNLRRERL 207
Query: 272 ATDNNLEG---------DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
+ EG D+ L P ++ + K R + +G
Sbjct: 208 KAAEDAEGKRAVPKTFLDARALARLPTHVVNSRAK-----------------RALEEG-- 248
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D W K+G L+ L++ A D G P HT+ R
Sbjct: 249 DDTDWPTITRAKLGSALVMALLDVAK-----DDAGS------PLLEHTIVYSN-----AR 292
Query: 383 RYGVIEC-DPLVRKG-LEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ G+I D L+ +T R +P ++PMLV P WR Y+ GG L + MRTHG
Sbjct: 293 KIGIIRAKDELLSHARCPETIRRAAMPRFLPMLVEPRRWRAYDEGGFLRLRAVAMRTHGC 352
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP 499
Q E + R V LD +G W VN + ++ WASGG L QED+
Sbjct: 353 ALQMEAFR-NARGIEGGVLAGLDAMGKVPWAVNGPVFDLVKAAWASGGKWPDLPSQEDLA 411
Query: 500 LPE---------KPNTDDETEIKKWKWKVKTA---KKQNSEKHSQRCDIELKLSVARKMK 547
LPE + + D++ K + ++ + K++N+E HS RCD LKLS+A + K
Sbjct: 412 LPEPMDLAEALARADGDEDGGKKLYDAHLRRSARLKRRNAELHSLRCDTLLKLSIAEQFK 471
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
DE FY+P+N+DFRGRAYP+ P LNHLGSD+CR +L F E LG GL WL+IHLANL+
Sbjct: 472 DEAAFYFPYNVDFRGRAYPVPPNLNHLGSDVCRAMLTFAEAKRLGDDGLFWLRIHLANLF 531
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G+ K S + R AF H DI D+ +RP++G WWL A++P+Q LA C L+ A
Sbjct: 532 --GLSKKSLDDRAAFAVAHEADIRDAYERPMDGNMWWLEADEPWQALAACRELARAAELD 589
Query: 668 SPESTISHIPVH 679
P +PVH
Sbjct: 590 DPRDYECALPVH 601
>gi|449016962|dbj|BAM80364.1| single subunit mitochondrial RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 1252
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 171/548 (31%), Positives = 267/548 (48%), Gaps = 57/548 (10%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--- 200
R+ +E A E A Y+ E+ +L + L L WF P+ AI ++Q
Sbjct: 420 REFNLEERAVEAAVARYRSFTQSALERGDINSLQPSQRLLLSWFFPVTMAIHQEQERIRR 479
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+ + P+ L +++AVI +H+ +G ++ + V ++ A +G +++ E +
Sbjct: 480 GELSYDGNVCGPHLLRLKPEVLAVIALHETLGRVLQDRAGVAFIRVASAVGRSVQAEINL 539
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
Q ++ ++ + + + L + V ++ K +
Sbjct: 540 QRL----RELHSEQRHRQLPQDRALRRTLALASTGSGGSRAVAAINLAAK--------RM 587
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP--AFVHTLKSFTKEA 378
+D+ W +KVG LI +M+ A I D+P + AF H + +E
Sbjct: 588 ELDTATWDDSVTIKVGSVLISFVMKHALIHI------DTPTGKQAVQAFRHGYRPLQREP 641
Query: 379 LKGRRYGVIECDPLVRKGL---EKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVM 434
R+ GVIE V L E R I+P + PMLVPP W YN GG+ VM
Sbjct: 642 ---RKVGVIELHKSVLNLLLANESDLRETILPRFQPMLVPPRPWTAYNSGGYLRPRGLVM 698
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD 494
R G+R Q E +K + L VF L+ LG+T WR+N+ +L V++++W +GG +AGLV
Sbjct: 699 RVRGSRLQLEALK---KGDLSEVFAGLNALGATPWRINRPVLDVVEKLWRAGGDIAGLVA 755
Query: 495 QEDVPLPE------KPNTDDET----------EIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
+ D+ LP P D + E ++ W+++ K N E+H+ RC++
Sbjct: 756 RADLQLPALAESVVDPAPDGKESAASTESLSREQRRAIWRIR---KTNRERHALRCELHY 812
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE-EGHPLGKAGLH 597
+L AR+ D FY PHNLDFRGRAYPM +L+H+ SD+CRG+L F G +G+ GL
Sbjct: 813 RLETAREFADVSRFYLPHNLDFRGRAYPMPSHLHHMSSDVCRGLLTFAGPGLRVGERGLF 872
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLA 655
W+K+HLANL G+DKL ++ RVAF E+ + + A P WW EDPFQ LA
Sbjct: 873 WMKVHLANLC--GMDKLPFDERVAFAESVMPKVLAVAAAPTADSNLEWWAQQEDPFQLLA 930
Query: 656 TCINLSEA 663
C L+ A
Sbjct: 931 ACFELAAA 938
>gi|242818630|ref|XP_002487156.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713621|gb|EED13045.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1377
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 165/484 (34%), Positives = 255/484 (52%), Gaps = 34/484 (7%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
K+ +A + LP D +A IT+ ++ L E ++V +G+ ++NE QS
Sbjct: 418 KNREHADFLRILPPDTLAAITVMHVIQLFARAGVEKGLKVPTIMTSLGQEVQNEFIAQSM 477
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+++ + K IK+ + +K+ IK +KL V+
Sbjct: 478 IAKSERDSRH---------------HKFIKQVVENRKKKAGRIKFKKLLTEMKSNSRDVE 522
Query: 324 SK-PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF--TKEALK 380
S+ W D KVG L+ +L + A + PV Q PD + + +F + E +
Sbjct: 523 SEFTWPVDVHAKVGGALLSVLFDCA--KAPVIQ---EDPDTKKRIMVMESAFQHSYEINR 577
Query: 381 GRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-G 438
GR++G++ P V + L + + + +MPML P W +++GG S +MRT G
Sbjct: 578 GRKFGLLHAHPEVTRRLIREAPNAVQARHMPMLSEPQPWTAFDKGGFLAQRSPIMRTTPG 637
Query: 439 ARQQRETIKMTPRSQLEPVFQA-LDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--VDQ 495
Q +K + P +A LD LG T W +N + V+ W +G A + +D
Sbjct: 638 DTLQHSYMKKALENNGLPEVRAGLDILGKTAWTINNDVFDVMLEAWNTGEAFAKIPPLDP 697
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+ +P+PEKP D+ IK + K++ + S HSQRC I ++ +AR K++ FY P
Sbjct: 698 Q-IPMPEKPADDNPEAIKVYNNKLREVENLRSGLHSQRCFINFQMEIARAYKNQT-FYLP 755
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ YLN + +D R +L F++G PLG+AGL WLKIHL+N+Y G DK S
Sbjct: 756 HNMDFRGRAYPLPAYLNQMSADNARSLLLFKKGKPLGEAGLRWLKIHLSNVY--GFDKAS 813
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R FT HL+D+ DSA++ L GR+W+L AEDP+QCLA C L AL+ +P +S
Sbjct: 814 LKEREEFTMQHLEDVLDSANKGLHGRKWFLEAEDPWQCLAACCELRNALKLENPTEYVSR 873
Query: 676 IPVH 679
+PVH
Sbjct: 874 LPVH 877
>gi|346973344|gb|EGY16796.1| DNA-directed RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1409
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 259/512 (50%), Gaps = 60/512 (11%)
Query: 193 AIAKDQATAQDKWKHMTYAPYFN-NLPADMMAVITMHKL--VGLLMTNAGEVRVVQAACQ 249
A AK + T +D + TY P+ + P+ + AV + L +L + G + + A
Sbjct: 418 AEAKPRKTPED-YDRCTYGPFLRLSTPSRLAAVTILGTLSSTAILGVDKG-MPLSAALSS 475
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+ + E + R Q +++K K TN + K ++ V K
Sbjct: 476 LAKLAEEDIRAQLTVQNSKTK--------------TN--------KSKRRRVVQVASKSS 513
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGC------------RLIQLLMETAYIQ-----PP 352
KL VR + + KP +D + L+ L++TA I+ P
Sbjct: 514 KLDAVRAELGAEGEVKPLAKDTEPRADTPWPVAVKAKVAAALLSALIDTAKIKVVKEHPE 573
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDP-LVRKGLEKTGRHMIIPYMPM 411
L +PAF H + +G++ G++ + LV + + ++PM
Sbjct: 574 TKTLISQ---YQPAFSHA-----TQLRRGKKIGMVLLNKELVNIMKREPQGDFLAKHLPM 625
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKW 469
+V P W +++GG S ++R HG + QR T R ++ +F+ LD LG T W
Sbjct: 626 VVKPEPWSKFDKGGFLESTSNLVRVKHGDKDQRIYTEAAIARGDMDQIFKGLDVLGQTAW 685
Query: 470 RVNKRILGVIDRMWASGGCLAGL-VDQEDVPLPEKPN-TDDETEIKKWKWKVKTAKKQNS 527
R+N IL V+ W SG LA + DV +P +P ++D TE + W VK A+ +
Sbjct: 686 RINAPILEVMLAAWNSGTALANIPALNPDVHVPTEPAASEDPTERRLWLRAVKAAENERG 745
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
HS RC + +L +AR +++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L F +
Sbjct: 746 GLHSVRCFMNFQLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFAD 804
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G LG+ GL WLK+HLAN+Y G DK S R +F ++L +IFDSA +P+EG RWWL A
Sbjct: 805 GKELGEKGLKWLKVHLANVY--GFDKASLRDRESFAMDNLVNIFDSASKPMEGNRWWLKA 862
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDP+QCLA C L AL SP P +SH+PVH
Sbjct: 863 EDPWQCLAACFELKAALESPEPTKFVSHLPVH 894
>gi|366991923|ref|XP_003675727.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
gi|342301592|emb|CCC69362.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
Length = 1326
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 251/484 (51%), Gaps = 52/484 (10%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTK 268
APY + + M VI + +L+ L T +R +A +G+AIE E R + KS
Sbjct: 475 APYLLLVNPEKMCVIAILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKSES 534
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
+ + K E +KL +R + +++Q + + W
Sbjct: 535 N--------------IFKEVNKKSPEFKKLVQRARQSFRSNQVEQSKIV---------WP 571
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHTLKSFTKEALKGR 382
Q K+G LI L+ A VD G P + PAF H + KG
Sbjct: 572 QAIRAKIGSTLISTLIHVA----KVDVKGFDPVTKQEVYGKAPAFSHGY-----QYCKGS 622
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ GVI+ + L G +I +PMLV P WR + GG+F+ S ++R+
Sbjct: 623 KLGVIKIHRSLINQL--NGERLIASVQPQLLPMLVKPRPWRNWRSGGYFYSQSTLIRSKE 680
Query: 439 ARQQRETIKMTPRSQLEP-VFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QE 496
+ +Q +K + + P V+ L+ LG T W +NK++ VI ++W +G + + Q
Sbjct: 681 SPEQLAYLKAVSDADVIPDVYTGLNALGETAWTINKKVFDVISQVWNTGDEFLEIPEIQH 740
Query: 497 DVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
D+ L P P D +E +KWK + K + S+ S RCD KL +AR E+ FY+P
Sbjct: 741 DMNLLPPPPRDSDPSEFRKWKLQNKELANKISKNRSVRCDTNYKLEIARAFLGEK-FYFP 799
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYP+ P+ NHLG+DL RG+L F +G LG GL WLKIHL+NLY G+DK
Sbjct: 800 HNLDFRGRAYPLSPHFNHLGNDLSRGLLIFWKGKKLGPHGLVWLKIHLSNLY--GMDKAP 857
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
++ RV F E+HL +I +SA+ PL +WW A+ P+QCLATCI L+EAL+ +PE ISH
Sbjct: 858 FDERVRFVEDHLQEIKESAENPLTTGKWWKDADKPWQCLATCIELTEALKLDNPEEFISH 917
Query: 676 IPVH 679
PVH
Sbjct: 918 QPVH 921
>gi|310796543|gb|EFQ32004.1| DNA-dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1395
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 173/503 (34%), Positives = 265/503 (52%), Gaps = 49/503 (9%)
Query: 193 AIAKDQATAQDKWKHMTYAPYFN-NLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIG 251
A A + T +D + Y P+ + P+ + AV ++G L + A + V I
Sbjct: 422 AEATPKKTPED-YDRCVYGPFLRLSTPSRLSAVT----ILGTLSSTA--IAGVDRGMPIS 474
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
AI N AR+ + + + A + L+ S+P + ++I + ++R TS + KL
Sbjct: 475 IAISNLARLAE--EDIRAQLAANQKLK--SKPKS---RRVIMTK---RERKTSPEEPAKL 524
Query: 312 QQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDIRPA 366
+ PW KVG L+ L+ETA I+ P L +PA
Sbjct: 525 LSDSEAKASPIPDTPWPPAVKAKVGAALLSALIETAKIKVVKEHPETKTLISQ---FQPA 581
Query: 367 FVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYN 422
F H + +G++ G++ E L+++ E G ++ ++PM+V P W+ ++
Sbjct: 582 FSHV-----SQLKRGKKIGMMLLNKELVNLMKR--EPQGDYLA-KHLPMVVEPEPWQAFD 633
Query: 423 RGGHFFLPSYV----MRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
+GG FL S ++ G Q+ + R ++ VF+ LD LG T WRVN +L V
Sbjct: 634 KGG--FLESRANLVRIKQGGKDQKLYSEAAIARGDMDQVFKGLDVLGKTAWRVNTPVLNV 691
Query: 479 IDRMWASGGCLAGL-VDQEDVPLPEKPN-TDDETEIKKWKWKVKTAKKQNSEKHSQRCDI 536
+ W +G LA L D+P+P +P +DD + W VK A + HS RC +
Sbjct: 692 MLEAWNTGEALANLPALNPDIPVPPEPEASDDPMAHRNWVRAVKAADNERGGLHSVRCFM 751
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
+L +AR +++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L F G LG+ GL
Sbjct: 752 NFQLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGILRFARGKELGEDGL 810
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLK+HLAN++ G DK S + R +F ++L +IFDSA++PL+G RWWL AEDP+QCLA
Sbjct: 811 KWLKVHLANVF--GFDKASLKDRESFAMDNLVNIFDSANKPLDGNRWWLKAEDPWQCLAV 868
Query: 657 CINLSEALRSPSPESTISHIPVH 679
C L AL SP P +SH+P+H
Sbjct: 869 CYELKAALESPEPTKFVSHLPIH 891
>gi|302655337|ref|XP_003019459.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
gi|291183183|gb|EFE38814.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
Length = 1305
Score = 258 bits (659), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 155/483 (32%), Positives = 250/483 (51%), Gaps = 42/483 (8%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 373 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 432
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 433 VEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 474
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 475 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 527
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 528 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 587
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-D 497
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V +
Sbjct: 588 DAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLN 647
Query: 498 VPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+ EKP+ DD +K + ++ KT A + HSQRC + ++ +AR +E FY PH
Sbjct: 648 LAELEKPDADDHEAVKAY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPH 705
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S+
Sbjct: 706 NMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASF 763
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R F +H+DDI DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH+
Sbjct: 764 QEREQFAIDHVDDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSLPDPTQYVSHL 823
Query: 677 PVH 679
PVH
Sbjct: 824 PVH 826
>gi|453081581|gb|EMF09630.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 1450
Score = 258 bits (659), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 169/494 (34%), Positives = 252/494 (51%), Gaps = 49/494 (9%)
Query: 208 MTYAPYFNNLPADMMAVIT----MHKLVG----LLMTNAGEVRVVQAACQIGEAIENE-- 257
+ Y PY LP +A T M ++ G + E ++ A + +A+E+E
Sbjct: 462 LVYGPYLELLPVKKVAANTILHVMTRMAGDKNTITEQFESETKLGTLAINLSKALESEWL 521
Query: 258 ARIQS-FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQV 314
A + KS KK + NL + I+ EK K R +K+++Q
Sbjct: 522 ATVAGKGGKSASKKPHSTANLR----------RRAIRALEKGIEKSRPGKSKRKKEIQAA 571
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----LGDSPPDIRPAFVHT 370
V+ W VK+G L+ LMETA Q PV + + ++PAF+H
Sbjct: 572 LAQVE-------WPVSVKVKLGAMLVSKLMETA--QLPVTREHPRTKEQVTQMQPAFMHR 622
Query: 371 LKSFTKEALKGRRYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+K + G+R GV +P L++K + ++ MPM+VPPL W G+ +GG+
Sbjct: 623 MKYY-----HGKRVGVFMPNPALIQKIKSEPVGSLLAKRMPMVVPPLPWTGWAKGGYLHY 677
Query: 430 PSYVMRTHGARQQRETIKMTP--RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ ++R + + M + L +++ L L W++++ + V W SG
Sbjct: 678 SNPILRLAAGDKSGKDYFMAADEKQDLSTLYKGLTALSKVPWKIHRGVFNVQLEAWNSGE 737
Query: 488 CLAGLVD-QEDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
+A ++P+P +P++ D + +W+ K + S HS+RC +L +AR
Sbjct: 738 EIANFAPLNPELPVPPEPDSSADPVQRLQWQQKCRDIANSRSGNHSKRCFQNFQLEIART 797
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
M +E Y+PHN+DFRGRAYP+ PYLNH+G+D RG+L F EG LG++GL WLKIH+A
Sbjct: 798 MLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRGLLVFGEGKELGESGLRWLKIHMAT 856
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
+ G DK S E R+ FT HLDDI+DSA PL GRRWWL AED +Q LA C L AL
Sbjct: 857 V--AGYDKASMEERIEFTMQHLDDIYDSAKNPLSGRRWWLQAEDAWQTLAACFELVAALD 914
Query: 666 SPSPESTISHIPVH 679
SP P ISH+PV
Sbjct: 915 SPDPTKYISHLPVQ 928
>gi|225680077|gb|EEH18361.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb03]
Length = 1319
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 245/482 (50%), Gaps = 32/482 (6%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
K + +PY + D +A +T+ L N + V++ +G++I +E F
Sbjct: 326 KRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKSIHDEFMAMQF 385
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ + K++++ + + + K V +K ++Q R I K
Sbjct: 386 -RELENKSSSNG-----------------RTSKFIDKLVHKGTRKAQVQWKRLIAKFEHS 427
Query: 324 SKP--WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
+P W K+G L +L+ +A + P + + R + + + E +G
Sbjct: 428 QRPVEWSPIVQAKIGACLALMLLSSATV-PVFSKDPKTNKTKRSDQMAFRRVYQLE--RG 484
Query: 382 RRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
R G + D +V K + ++ ++PM+ PP W GG PS V+R G
Sbjct: 485 FRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARDGGFLKTPSPVLRVKEGD 544
Query: 440 RQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQED 497
Q ++ R L+ VF L LG T W++N+ +L V+ W SG +A L + D
Sbjct: 545 VSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMFEAWNSGEEIANLAPETPD 604
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+P PE+PNT+D + + A S HSQRC +L +AR ++E FY PHN
Sbjct: 605 IPEPERPNTEDRDALTDYYRAKMHAANTRSSYHSQRCFQNFQLEIARAYRNET-FYLPHN 663
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
LDFRGRAYPM PY N +G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++
Sbjct: 664 LDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSGLRWLKIHLANVF--GFDKASFQ 721
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R F+ +HL+DI DSA L+G++WWL A DPFQCLA CI L+ A++ P +SH+P
Sbjct: 722 EREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLAACIELTNAMQLEDPTKFVSHLP 781
Query: 678 VH 679
VH
Sbjct: 782 VH 783
>gi|344232068|gb|EGV63947.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1279
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/502 (32%), Positives = 260/502 (51%), Gaps = 50/502 (9%)
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAA 247
+++A ++D+A +++ YAPY + + M +T+ +L+ L T A +R +A
Sbjct: 413 IQNAKSEDRALVKER---SYYAPYLTLVTPEKMCAVTILELLRLNSTGGIADGMRTARAL 469
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
+G+AIE E + Q +S KK + + +E K+ + + + K
Sbjct: 470 ISVGKAIELEYKSQKLMESEKKSISK--------------KSRSAREWNKIFRVMNNYSK 515
Query: 308 KQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDI 363
Q W K+G L LL+ A + PV G +
Sbjct: 516 DSDNQA----------HNEWDNTLHAKIGSILTSLLIHVAKV--PVKGTDPATGKTVTGS 563
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGY 421
+PAF HT + L+G++ GV++ + K L + G + ++PML PP W Y
Sbjct: 564 QPAFFHTY-----QYLQGQKLGVLKLHKNIIKQLSVDVDGSLLQPHFLPMLTPPRKWSSY 618
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
N GG+ F + ++RT + + +K + R L+ V+ L+ LG+T W VN+++L V+
Sbjct: 619 NEGGYLFSQNTLVRTRDSPETLAYLKAASQRGDLDKVYDGLNVLGNTPWTVNRKVLEVMT 678
Query: 481 RMWASGGCLAGL---VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
+ W +G + VD+ ++P P P+ + +++++ KV+ A ++ SQRCD
Sbjct: 679 KFWNTGDEFLDIPPVVDEPELPEP-VPSNAEPNVLREYQRKVRLAINISASAKSQRCDTN 737
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
KL +AR E+ F+ PHN+DFRGRAYPM P+ NHLG+DL R + F +G LG+ GL
Sbjct: 738 YKLEIARAFLGEKMFF-PHNIDFRGRAYPMSPHFNHLGNDLTRSLFLFWDGKQLGERGLW 796
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLK+HLANLY GVDK+ E R FTE HLD I +SA+ P + WW E P+Q LA C
Sbjct: 797 WLKVHLANLY--GVDKIPLEERAQFTETHLDKIRESAETPFDKDAWWTKGEKPWQVLACC 854
Query: 658 INLSEALRSPSPESTISHIPVH 679
L+EA + P +SH+PVH
Sbjct: 855 FELNEAYKLEDPTQYVSHVPVH 876
>gi|380495438|emb|CCF32395.1| DNA-dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1400
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 212/373 (56%), Gaps = 31/373 (8%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDIRPAFVHTLKSFTK 376
V KPW KVG L+ L+ETA I+ P L +PAF H +
Sbjct: 539 VADKPWPVAVRAKVGAALLSALIETAKIKVVKEHPETKALVSQ---YQPAFSHVSR---- 591
Query: 377 EALKGRRYGVIECDPLVRKGL------EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
KG++ G+I L+ K L E G ++ ++PM+V P W+ +++GG
Sbjct: 592 -LKKGKKTGMI----LLNKELVNIMKREPQGDYLA-KHLPMVVEPEPWQAFDKGGFLESR 645
Query: 431 SYVMRT-HGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
+ ++R G + Q+ + R ++ VF+ LD LG T WRVN +L V+ W +G
Sbjct: 646 ANLVRIKQGDKDQKLYSEAAIARGDMDQVFKGLDVLGKTPWRVNTPVLNVMLAAWNTGEA 705
Query: 489 LAGL-VDQEDVPLPEKPN-TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM 546
LA L ++P+P +P T+D + W V+ A+ + HS RC + +L +AR
Sbjct: 706 LANLPALNPNIPIPREPEATNDPLAHRAWVRAVRAAENERGGMHSVRCFMNFQLEIARAF 765
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
+++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L F G LG+ GL WLK+H+AN+
Sbjct: 766 RNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFANGKELGEEGLKWLKVHVANV 824
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
+ G DK S + R +F ++L +IFDSA+ PL+G RWWL AEDP+QCLATC L AL S
Sbjct: 825 F--GFDKASLKERESFAMDNLVNIFDSANNPLDGTRWWLKAEDPWQCLATCFELKAALES 882
Query: 667 PSPESTISHIPVH 679
P P +SH+PVH
Sbjct: 883 PEPTKFVSHLPVH 895
>gi|406603686|emb|CCH44839.1| DNA-directed RNA polymerase, mitochondrial [Wickerhamomyces
ciferrii]
Length = 1332
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/569 (32%), Positives = 289/569 (50%), Gaps = 71/569 (12%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFE---PL-RDAIA- 195
RQ +E ++ E A ++++ + E K +L KSL GWFE PL RD I
Sbjct: 363 RQTALENKSIEAAQEKWKH---EYEEIKKRGDLGMSKSLNARLWGWFEQMMPLVRDEIER 419
Query: 196 ------------KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEV 241
K++A AQ + YAPY L + VIT+ +++ T + +
Sbjct: 420 CKNVDDIQIKTLKNEAFAQHS-ERKKYAPYLRLLDPKKVTVITILEMLKNNSTGGISEGM 478
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R +A + +A+E E R + + +KN N D+ L+N P+ L K L
Sbjct: 479 RTARAVLSVSKALELEFRSEQILNT--EKNFVKN---FDNSKLSN-PKNLKKYSMSLSNF 532
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQL 356
+I K+ W QD VK+G LI +LM A ++ P QL
Sbjct: 533 KNDVISDMKVY--------------WPQDIKVKIGSVLISILMHVAKVEVSGVDPSTKQL 578
Query: 357 --GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPML 412
G++P AF H+ + G + G+++ ++ L +K + +PML
Sbjct: 579 VRGEAP-----AFYHSFQYHN-----GAKIGILKIHKVLSSQLSADKLVGAVQPQSLPML 628
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
+ P W +N G +++ + ++R + +Q IK + +L+ V+ L+ LG+T W VN
Sbjct: 629 IQPRPWTSWNNGAYYYSQNQIIRLRDSPEQLAYIKASS-DKLDKVYDGLNVLGNTAWTVN 687
Query: 473 KRILGVIDRMWASGGCLAGLVD-QEDVPLPE-KPNTDDETEIKKWKWKVKTAKKQNSEKH 530
+R+ V+ ++W +G + E + LPE P + D + + +WK KVK + + +
Sbjct: 688 ERVFKVMSKIWNTGDEFLDIPKAHESLELPEVPPRSSDPSVLNEWKIKVKALQDKYATDR 747
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S RCD KL +AR E+ FY+PHNLDFRGRAYP+ P NH+GSDL RG+L F +G
Sbjct: 748 STRCDANYKLEIARAFLGEK-FYFPHNLDFRGRAYPISPNFNHMGSDLSRGLLLFWKGKE 806
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
+G+ GL WLKIHLANL+ G+DK R AF ++++ + +A+ P+ + WW A+ P
Sbjct: 807 IGEEGLRWLKIHLANLF--GIDKAPLNEREAFVNDNIELVKRAAEDPMANQEWWTKADKP 864
Query: 651 FQCLATCINLSEALRSPSPESTISHIPVH 679
+Q LAT I+L++AL+ P P ISH PVH
Sbjct: 865 WQALATIIDLADALKLPDPTKHISHQPVH 893
>gi|67477377|sp|P38671.2|RPOM_NEUCR RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
Length = 1423
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 216/372 (58%), Gaps = 21/372 (5%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
V+R +G R+QR T R ++ VF+ LD LG T W++N + V+ +W SG +A
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNSGKQVA 711
Query: 491 GLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ + D+P PE +T+D T + W ++K + + S HSQRC + +L +AR +
Sbjct: 712 NIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNFQLEIARAYR 770
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN+Y
Sbjct: 771 DQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLKVHLANVY 829
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G DK S + R F + ++++I DS + PL G +WWL AEDP+QCLATC L+ AL
Sbjct: 830 --GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFELAAALELE 887
Query: 668 SPESTISHIPVH 679
P +SH+P+H
Sbjct: 888 DPTKYVSHLPIH 899
>gi|164425173|ref|XP_962570.2| hypothetical protein NCU06308 [Neurospora crassa OR74A]
gi|157070818|gb|EAA33334.2| predicted protein [Neurospora crassa OR74A]
Length = 1443
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 216/372 (58%), Gaps = 21/372 (5%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
V+R +G R+QR T R ++ VF+ LD LG T W++N + V+ +W SG +A
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNSGKQVA 711
Query: 491 GLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ + D+P PE +T+D T + W ++K + + S HSQRC + +L +AR +
Sbjct: 712 NIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNFQLEIARAYR 770
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN+Y
Sbjct: 771 DQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLKVHLANVY 829
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G DK S + R F + ++++I DS + PL G +WWL AEDP+QCLATC L+ AL
Sbjct: 830 --GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFELAAALELE 887
Query: 668 SPESTISHIPVH 679
P +SH+P+H
Sbjct: 888 DPTKYVSHLPIH 899
>gi|345571061|gb|EGX53876.1| hypothetical protein AOL_s00004g535 [Arthrobotrys oligospora ATCC
24927]
Length = 1466
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 264/496 (53%), Gaps = 38/496 (7%)
Query: 203 DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEAIENEARI 260
D ++ Y PY L + +A IT+ ++ L ++ ++ + +G +E+E
Sbjct: 483 DNFERCQYGPYLRLLSPEKLAGITITSIIKLASGWQDSTAMKASASIISVGRNVEHEYIS 542
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK--KRVTSLIKKQ-KLQQVRGI 317
+ K+ + K EP + L K+ ++K K + LI +Q + ++
Sbjct: 543 EQLQKAFETKAG---------EPEYYKKKALQKQLAEVKNEKDLAMLIYRQNRRAEMEKD 593
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQP-PVDQ--LGDSPPDI---RPAFVHTL 371
G + ++ W Q KVG L+ LL + A I+ P ++ L D+ +PA VH
Sbjct: 594 GTGLLLNERWSQPVRAKVGSVLVSLLFQVAKIKVRPTNKKVLKHMDKDLAIDQPALVHGY 653
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+ + G++ GVI K L E + +PM+ P W +N G ++F
Sbjct: 654 -----QFVGGKKIGVIRLHDEFSKKLMTEPLKGTTLAKQLPMIAKPRPWCAWNDGAYYFT 708
Query: 430 PSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
P+ ++R + +Q +K + L+ +F LD LGST W +N+++ VI ++W +G
Sbjct: 709 PTRMVRVKDSLEQTMYVKEASKHGNLDRLFTGLDVLGSTAWTINQKVFDVILQVWNTGDK 768
Query: 489 LAGL--VDQEDVPLPEKPNTDDETEIKKWK---WKVKTAKKQNSEKHSQRCDIELKLSVA 543
A + ++DV +PE P + + K ++ ++N HSQRCD+ KL +A
Sbjct: 769 FADIPPTFEKDVNMPEMPQPNADAAAKAAFKIAYQEMALIRKN--HHSQRCDVNFKLEIA 826
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R +E FY+PHN+DFRGRAY M P+LNHLG+DLCRG+L+F E PLG++GL WLKIHL
Sbjct: 827 RAFYNEV-FYFPHNVDFRGRAYAMPPHLNHLGNDLCRGLLKFSEKKPLGESGLRWLKIHL 885
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
+NL GG DK S R + E+ ++D+FDSA PL G+RWWL +EDP+Q LATC+ L A
Sbjct: 886 SNL--GGYDKASLMAREEWAESRMEDVFDSARDPLGGKRWWLESEDPWQMLATCMELEAA 943
Query: 664 LRSPSPESTISHIPVH 679
+ S P S++PVH
Sbjct: 944 MSSKDPLKYESNMPVH 959
>gi|226291871|gb|EEH47299.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb18]
Length = 1408
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 163/482 (33%), Positives = 244/482 (50%), Gaps = 32/482 (6%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
K + +PY + D +A +T+ L N + V++ +G++I +E F
Sbjct: 439 KRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKSIHDEFMAMQF 498
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ K ++ K I +KL + T +K ++Q R I K
Sbjct: 499 RELENKSSSNGRT------------SKFI---DKLAHKGT---RKAQVQWKRLIAKFEHS 540
Query: 324 SKP--WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
+P W K+G L +L+ +A + P + + R + + + E +G
Sbjct: 541 QRPVEWSPIVQAKIGACLALMLLSSATV-PVFSKDPKTNKTKRSDQMAFRRVYQLE--RG 597
Query: 382 RRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
R G + D +V K + ++ ++PM+ PP W GG PS V+R G
Sbjct: 598 FRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARDGGFLKTPSPVLRVKEGD 657
Query: 440 RQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQED 497
Q ++ R L+ VF L LG T W++N+ +L V+ W SG +A L + D
Sbjct: 658 VSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGEEIANLAPETPD 717
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+P PE+PNT+D + + A S HSQRC +L +AR ++E FY PHN
Sbjct: 718 IPEPERPNTEDRDALTDYYRAKVHAANTRSSYHSQRCFQNFQLEIARAYRNET-FYLPHN 776
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
LDFRGRAYPM PY N +G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++
Sbjct: 777 LDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSGLRWLKIHLANVF--GFDKASFQ 834
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R F+ +HL+DI DSA L+G++WWL A DPFQCLA CI L+ A++ P +SH+P
Sbjct: 835 EREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLAACIELTNAMQLEDPTKFVSHLP 894
Query: 678 VH 679
VH
Sbjct: 895 VH 896
>gi|302498776|ref|XP_003011385.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
gi|291174935|gb|EFE30745.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
Length = 1305
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 153/483 (31%), Positives = 250/483 (51%), Gaps = 42/483 (8%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 373 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 432
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 433 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 474
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 475 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 527
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 528 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 587
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-D 497
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V +
Sbjct: 588 DAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLN 647
Query: 498 VPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+ EKP+ +D +K + ++ KT A + HSQRC + ++ +AR +E FY PH
Sbjct: 648 LAELEKPDAEDHEAVKAY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPH 705
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S+
Sbjct: 706 NMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASF 763
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R F +H++DI DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH+
Sbjct: 764 QEREQFAIDHVEDILDSANNGLKGKRWWLKAADPFQCLAACVELKNALSLPDPTKYVSHL 823
Query: 677 PVH 679
PVH
Sbjct: 824 PVH 826
>gi|347976143|ref|XP_003437401.1| unnamed protein product [Podospora anserina S mat+]
gi|170940259|emb|CAP65486.1| unnamed protein product [Podospora anserina S mat+]
Length = 1346
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 168/583 (28%), Positives = 275/583 (47%), Gaps = 76/583 (13%)
Query: 142 KRRQI--KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA---- 195
+RR+I ++E + + A ++ M E L + P + + W L+ I+
Sbjct: 266 ERREIQSRLEKDTIDAAVDRWRKESQAMSEMGLGLSSPGLNARLFEWHTDLQRRISQEIK 325
Query: 196 ------KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAA 247
K Q D PY D +A + + L+ L+ T + V + +
Sbjct: 326 LAVESEKRQKKTSDDLVRSQLTPYLLQSTPDRLAAVVILSLLSLVSTYGVDKGVPLTRVV 385
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
+ ++E + R+ +K+T+ + P+++ + Q+ +++ +L+K
Sbjct: 386 HHLASSVEEDIRV---YKATQ-----------------SIPKEMARTQKAREQKAKTLLK 425
Query: 308 KQKLQQVRGIVKGHVDSKP---------------------WGQDALVKVGCRLIQLLMET 346
K + +G + W K G L+ ++T
Sbjct: 426 VAKARDYYAAKRGGQEEPAQAANDGKVFSSDLPLPILEPRWPATTKTKFGALLLGAFLDT 485
Query: 347 AYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG 401
A + P +L ++PAF H+ + +G++ GVI + + L+
Sbjct: 486 AKVTVVREHPETKELVSQ---MQPAFSHS-----TQLRRGKKVGVIVPNRALVDILKTEP 537
Query: 402 R-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR--QQRETIKMTPRSQLEPVF 458
R ++ ++PM+V P W + +GG P+ V+R QQ T R +E +
Sbjct: 538 RVEVLARHLPMVVEPEPWTKWEKGGFIEYPTSVVRAKAQEKDQQIYTEAAIERGDMEQMM 597
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-VDQEDVPLPEKP-NTDDETEIKKWK 516
+ LD LG T WR+N+++ V+ W +G +A + ++P+P +P N DD + W
Sbjct: 598 KGLDVLGQTAWRINRKVFDVMLEAWNNGAEVANIPAVNPNLPMPPEPENLDDPLARRVWL 657
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
VK + + HSQRC + +L +AR +D+ F++PHNLDFRGRAYP+ YLNH+G+
Sbjct: 658 KAVKAVENEKGGLHSQRCFMNFQLEIARAFRDQT-FFFPHNLDFRGRAYPVPTYLNHMGA 716
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
D RG+L+F +G PLG GL WLKIHLAN+Y G DK S R F +L + DS
Sbjct: 717 DHMRGLLKFAKGKPLGTNGLRWLKIHLANVY--GFDKASLAEREEFANENLQNALDSVRN 774
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL G WWL AEDP+QCLATC L++AL P P +SH+P+H
Sbjct: 775 PLNGNGWWLKAEDPWQCLATCFELTDALEHPDPTKFVSHLPIH 817
>gi|320582765|gb|EFW96982.1| mitochondrial RNA polymerase [Ogataea parapolymorpha DL-1]
Length = 1327
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 39/503 (7%)
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAA 247
L D + D+ +K KH PY L A+ T+ +++ +++ A V +
Sbjct: 452 LEDTSSFDKERYSEKLKH---GPYLTLLKPSKSAITTILEVIKTCVSSDLAHGAPVSKVV 508
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE--KLIKEQEKLKKRVTSL 305
IG A+E E + Q A D ++ + + PE K ++ + + L
Sbjct: 509 MAIGRAMELEFKAQRLL-------AADIDVNKNFRAIRKTPEFKKFVR-----GAKASQL 556
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPP 361
I++ + ++ + W D+ +VG ++ LL++ A + P+ GD+
Sbjct: 557 IREAE-KRAESSAGQSIAFVSWDTDSRCRVGSVMLSLLLQVAKVDVEGTDPI--TGDTKT 613
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
+ PAF HT + G + GVI+ + + G E+ + +MPM+ P W
Sbjct: 614 ALAPAFYHTY-----DYQNGSKVGVIKLNTKFASKLGTERVDNTLQPHFMPMIAKPRPWT 668
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGV 478
+N GG++ S V++ + +Q + + +++ V QAL+ LGST W VNK +L V
Sbjct: 669 THNDGGYYLKKSAVLKAKNSPEQAAYARTAAIKGKMDTVLQALNNLGSTAWTVNKEVLKV 728
Query: 479 IDRMWASGGCLAGLVD-QEDVPLPEKPNTDDE-TEIKKWKWKVKTAKKQNSEKHSQRCDI 536
+ ++W +G + +E + LP +P+TD E K K K + ++ S+ S RCD
Sbjct: 729 MIQVWNTGEEFLDIPKFRETLNLPPQPSTDASLEEFFKHKRKCQLICREFSKDRSMRCDT 788
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
KL +AR E Y+PH+LDFRGRAYPM PY NHLG+DL RG+L+F G LG+ GL
Sbjct: 789 NYKLEIARAYVGER-IYFPHSLDFRGRAYPMPPYFNHLGNDLSRGLLKFWNGKQLGEEGL 847
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLKIH+ NL G DKLS RV + ++HLD+IF+SA PL G R W+ A+ P+Q LA+
Sbjct: 848 RWLKIHVCNLM--GFDKLSLNDRVKYVDDHLDEIFESARDPLGGSRMWVNADKPWQFLAS 905
Query: 657 CINLSEALRSPSPESTISHIPVH 679
+ L A R P P ISH PVH
Sbjct: 906 AMELERAYRLPDPTQFISHQPVH 928
>gi|327305697|ref|XP_003237540.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
gi|326460538|gb|EGD85991.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
Length = 1375
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 153/483 (31%), Positives = 250/483 (51%), Gaps = 42/483 (8%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-D 497
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V +
Sbjct: 658 DAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLN 717
Query: 498 VPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+ EKP+ +D +K + ++ KT A + HSQRC + ++ +AR +E FY PH
Sbjct: 718 LAELEKPDAEDHEAVKAY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPH 775
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S+
Sbjct: 776 NMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASF 833
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R F +H++DI DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH+
Sbjct: 834 QEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSLPDPTQYVSHL 893
Query: 677 PVH 679
PVH
Sbjct: 894 PVH 896
>gi|326484447|gb|EGE08457.1| DNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1375
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 252/484 (52%), Gaps = 44/484 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YTPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHAKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
W +K+G L +L TA I P +++ + PAF H +
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAK---EPAFQHVY-----QLQ 596
Query: 380 KGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
KG G ++ + +V K ++ +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 597 KGHNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRH 656
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE- 496
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V
Sbjct: 657 DDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANL 716
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
++ EKP+ +D +K + ++ KT A + HSQRC + ++ +AR +E FY P
Sbjct: 717 NLAELEKPDAEDHEAVKAY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLP 774
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S
Sbjct: 775 HNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKAS 832
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
++ R F +H++DI DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH
Sbjct: 833 FQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSLPDPTQYVSH 892
Query: 676 IPVH 679
+PVH
Sbjct: 893 LPVH 896
>gi|336471080|gb|EGO59241.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2508]
gi|350292162|gb|EGZ73357.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2509]
Length = 1416
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 21/372 (5%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 535 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 590
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 591 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 647
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
V+R +G R+QR T R ++ VF+ LD LG T W++N + V+ +W SG +A
Sbjct: 648 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNSGKKVA 707
Query: 491 GLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ + D+P PE +T+D T + W ++K + + S HSQRC + +L +AR +
Sbjct: 708 NIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNFQLEIARAYR 766
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN+Y
Sbjct: 767 DQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLKVHLANVY 825
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G DK S + R F + ++++I DS PL G +WWL AEDP+QCLATC L+ AL
Sbjct: 826 --GFDKASLQERQDFADENIENIRDSVINPLNGNQWWLQAEDPWQCLATCFELAAALELE 883
Query: 668 SPESTISHIPVH 679
P +SH+P+H
Sbjct: 884 DPTQYVSHLPIH 895
>gi|326471406|gb|EGD95415.1| DNA-directed RNA polymerase 1A [Trichophyton tonsurans CBS 112818]
Length = 1375
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 252/484 (52%), Gaps = 44/484 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YTPFLLAVGPSKLAAVTILSVLGSIGSSGIDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHAKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
W +K+G L +L TA I P +++ + PAF H +
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAK---EPAFQHVY-----QLQ 596
Query: 380 KGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
KG G ++ + +V K ++ +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 597 KGHNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRH 656
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE- 496
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V
Sbjct: 657 DDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANL 716
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
++ EKP+ +D +K + ++ KT A + HSQRC + ++ +AR +E FY P
Sbjct: 717 NLAELEKPDAEDHEAVKAY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLP 774
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S
Sbjct: 775 HNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GFDKAS 832
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
++ R F +H++DI DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH
Sbjct: 833 FQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSLPDPTQYVSH 892
Query: 676 IPVH 679
+PVH
Sbjct: 893 LPVH 896
>gi|438813|gb|AAA33587.1| mitochondrial RNA polymerase [Neurospora crassa]
gi|1589165|prf||2210334A cyt-5 gene
Length = 1422
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 253/489 (51%), Gaps = 34/489 (6%)
Query: 202 QDKWKHMTYAPYF-NNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+D Y P+ + P + AV + L L M + + I + E + R+
Sbjct: 433 KDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMRSHKGSTIASLITHIAKFAEEDIRV 492
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
Q K+N ++ ++P +++ + +S + V
Sbjct: 493 QKAEALISKRNLRK------AKSKQHNPRSVLRFKNSTASAGSSDMADS------NNVAV 540
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTK 376
+D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 541 EMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM----- 593
Query: 377 EALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
+ KG++ G +I +V + + + ++PM+ PP W + +G + + V+R
Sbjct: 594 QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTPVLR 653
Query: 436 -THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
+G R+QR T R ++ VF+ LD LG T W++N + V+ +W SG +A +
Sbjct: 654 LKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNSGKQVANIP 713
Query: 494 DQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ D+P PE +T+D T + W ++K + + S SQRC + +L +AR +D+
Sbjct: 714 PLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGFDSQRCFMNFQLEIARAYRDQT 772
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN+Y G
Sbjct: 773 -FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLKVHLANVY--G 829
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK S + R F + ++++I DS + PL G +WWL AEDP+QCLATC L+ AL P
Sbjct: 830 FDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFELAAALELEDPT 889
Query: 671 STISHIPVH 679
+SH+P+H
Sbjct: 890 KYVSHLPIH 898
>gi|315046832|ref|XP_003172791.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311343177|gb|EFR02380.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1375
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 250/483 (51%), Gaps = 42/483 (8%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E +++ +S
Sbjct: 443 YIPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIVETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ +N E L K + + R ++ H +P
Sbjct: 503 IEEAQNEN------------------EVYYLNKTFRQMKVYNTTGKFRSYMQKHTKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVAETVTYA--MEPAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W +GG P+ V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNTQGGFLTQPTQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-D 497
Q + + R L+ +++ L LG T W++N+ + V+ W SG +A +V +
Sbjct: 658 DAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLN 717
Query: 498 VPLPEKPNTDDETEIKKWKWKVKT-AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+P EKP+ +D IK + ++ KT A + HSQRC + ++ +AR +E FY PH
Sbjct: 718 LPELEKPDAEDREAIKTY-YRAKTRADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPH 775
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ PY N +G+D CRG+L F EG LG++GL WL+IHL+N++ G DK S+
Sbjct: 776 NMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNVF--GYDKASF 833
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R F+ +H+++I DSA+ L+G+RWWL A DPFQCLA C+ L AL P P +SH+
Sbjct: 834 QEREQFSIDHVEEILDSANNGLKGKRWWLKAADPFQCLAACVELKNALSLPDPTQYVSHL 893
Query: 677 PVH 679
PVH
Sbjct: 894 PVH 896
>gi|325094325|gb|EGC47635.1| DNA-directed RNA polymerase [Ajellomyces capsulatus H88]
Length = 1397
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 218/406 (53%), Gaps = 28/406 (6%)
Query: 292 IKEQEKLKKRVTSLI--------KKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQ 341
++++ K K++++LI +K ++Q R I + +P W K+G L
Sbjct: 501 LEKKSKPTKKISALIDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLAS 560
Query: 342 LLMETAYIQPPVD--QLGDSPPDIRPAF--VHTLKSFTKEALKGRRYGVIEC-DPLVRKG 396
+L+ TA + P + + AF V+ L+ +G R G + D +V K
Sbjct: 561 MLLSTATVPVPTKDPKTNQQKQTDQAAFRRVYQLE-------RGFRVGYVHANDYIVEKL 613
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTP-RSQL 454
+ ++ ++PM+ PP W GG PS VMR G Q ++ R L
Sbjct: 614 RREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDL 673
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNTDDETEIK 513
+ VF L LG T W++N+ +L V+ W SG +A L + ++ PEKP+TDD +K
Sbjct: 674 DTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILK 733
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+ A + HSQRC +L +AR ++E FY PHNLDFRGRAYPM PY N
Sbjct: 734 DYYRARMHATNARTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQ 792
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
+G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++ R F +HL+DI DS
Sbjct: 793 MGADHCRGLLLFSKGRELGASGLRWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDS 850
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A L+G+RWWL A DPFQCLA CI L+ A+ P +SH+PVH
Sbjct: 851 AINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDPTKYVSHLPVH 896
>gi|240274975|gb|EER38490.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces capsulatus
H143]
Length = 1265
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 218/406 (53%), Gaps = 28/406 (6%)
Query: 292 IKEQEKLKKRVTSLI--------KKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQ 341
++++ K K++++LI +K ++Q R I + +P W K+G L
Sbjct: 388 LEKKSKPTKKISALIDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLAS 447
Query: 342 LLMETAYIQPPVD--QLGDSPPDIRPAF--VHTLKSFTKEALKGRRYGVIEC-DPLVRKG 396
+L+ TA + P + + AF V+ L+ +G R G + D +V K
Sbjct: 448 MLLSTATVPVPTKDPKTNQQKQTDQAAFRRVYQLE-------RGFRVGYVHANDYIVEKL 500
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTP-RSQL 454
+ ++ ++PM+ PP W GG PS VMR G Q ++ R L
Sbjct: 501 RREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDL 560
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNTDDETEIK 513
+ VF L LG T W++N+ +L V+ W SG +A L + ++ PEKP+TDD +K
Sbjct: 561 DTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILK 620
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+ A + HSQRC +L +AR ++E FY PHNLDFRGRAYPM PY N
Sbjct: 621 DYYRARMHATNARTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQ 679
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
+G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++ R F +HL+DI DS
Sbjct: 680 MGADHCRGLLLFSKGRELGASGLRWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDS 737
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A L+G+RWWL A DPFQCLA CI L+ A+ P +SH+PVH
Sbjct: 738 AINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDPTKYVSHLPVH 783
>gi|154286378|ref|XP_001543984.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407625|gb|EDN03166.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1397
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 206/389 (52%), Gaps = 14/389 (3%)
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQLLMETAYIQPPV-D 354
+ K V +K ++Q R I + +P W K+G L +L+ TA + P D
Sbjct: 515 IDKLVHKGTRKAQIQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKD 574
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLV 413
Q + A + + G R G + D ++ K + ++ ++PM+
Sbjct: 575 QKTNQQKQTDQAAFRRVYQLER----GFRVGYVHANDYIIEKLRREPLGELLAKHLPMVC 630
Query: 414 PPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRV 471
PP W GG PS VMR G Q ++ R L+ VF L LG T W++
Sbjct: 631 PPRPWTSSRGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKI 690
Query: 472 NKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
N+ +L V+ W SG +A L + ++ PEKP+TDD +K + A + H
Sbjct: 691 NRGVLNVMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYH 750
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
SQRC +L +AR ++E FY PHNLDFRGRAYPM PY N +G+D CRG+L F +G
Sbjct: 751 SQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRE 809
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
LG +GL WLKIHLAN++ G DK S++ R F +HL+DI DSA L+G+RWWL A DP
Sbjct: 810 LGASGLRWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDP 867
Query: 651 FQCLATCINLSEALRSPSPESTISHIPVH 679
FQCLA CI L+ A+ P +SH+PVH
Sbjct: 868 FQCLAACIELTNAMALEDPTKFVSHLPVH 896
>gi|254583510|ref|XP_002497323.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
gi|238940216|emb|CAR28390.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
Length = 1311
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 170/527 (32%), Positives = 266/527 (50%), Gaps = 64/527 (12%)
Query: 176 LPYVKS-------LFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
LP VK +F G+ ++A +D A+ + + Y PY + + + M VIT+
Sbjct: 420 LPLVKEEVKLCSQVFDGYANEKKNASKED---AKQERARLDYGPYLSLVDPEKMCVITIL 476
Query: 229 KLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+L+ L T +R +A +G+AIE E R + KS +
Sbjct: 477 ELLKLNSTGGIIEGMRTARAVISVGKAIEMEFRSEQLLKSESQA--------------FR 522
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
D K E +K +R S + K+++ + + W Q A K+G LI +L+
Sbjct: 523 DLGKNSHELKKYLQRAKSTFRSMKIEENKIM---------WPQAARAKIGSILISMLIHV 573
Query: 347 AYIQ----PPVDQ---LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEK 399
+ ++ PV + G++P AF H + G + GV++ + L
Sbjct: 574 SKVEVEGVDPVTKQKVYGEAP-----AFAHGYQYHN-----GSKLGVLKIHRSLVHQL-- 621
Query: 400 TGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQL 454
G ++ +PMLV P W+ + GG+++ S ++R+ + +Q +K ++ + +
Sbjct: 622 NGERLVASVQPQLLPMLVKPRPWKNWKSGGYYYTQSTLIRSKDSPEQIAYLKAVSDATAI 681
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--VDQEDVPLPEKPNTDDETEI 512
V+ L+ LG T W VN+ + V+ ++W SG + V ++ LP P D +
Sbjct: 682 NTVYDGLNVLGETPWTVNRPLFEVMSKVWNSGKPFLDIPGVQEKLTLLPPPPREADPSVH 741
Query: 513 KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLN 572
++WK K K + S S RCD KL +AR E+ FY+PHNLDFRGRAYP+ P+ N
Sbjct: 742 REWKLKNKELANRFSSNRSTRCDSNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFN 800
Query: 573 HLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFD 632
HLG+D+ RG+L F G LG GL WLK+HL+NL+ G DK S RV F + H+DDI
Sbjct: 801 HLGNDMSRGLLLFWNGKRLGPQGLKWLKVHLSNLF--GFDKASLLERVQFADEHIDDIKQ 858
Query: 633 SADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
SA PL+ WW+ AE P+Q LATC+ L++A++ +PE ISH PVH
Sbjct: 859 SAQDPLKEDAWWMKAEKPWQALATCMELNDAMKLDNPEDFISHQPVH 905
>gi|150865988|ref|XP_001385433.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
gi|149387244|gb|ABN67404.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
Length = 1251
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 244/483 (50%), Gaps = 50/483 (10%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P + M VIT+ +L+ L T +R +A +G+A+E E + QS KS
Sbjct: 405 YAPYMVLVPPEKMCVITILELLKLNSTGGIVDGMRAARALISVGKAVELEYKSQSLLKSE 464
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K + K +K + K+ +++ + I++ DS W
Sbjct: 465 IKAFS-----------------KKVKSTNQWKRILSN--------KKNNIIENPDDSTDW 499
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L LL+ A + PV G + +PAF HT + L G++
Sbjct: 500 SYTVYAKLGAVLTNLLLFVAKV--PVKAHNPTTGKTITGSQPAFFHTY-----QFLNGQK 552
Query: 384 YGVIECDPLVRKGLEKTGRHM---IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
GVI+ + K L GR + + P +PMLV P W YN GG+ + S ++R +
Sbjct: 553 LGVIKLHKEIIKQL--AGRSLSNAVQPQLLPMLVAPREWHSYNDGGYLYSRSTLVRIKDS 610
Query: 440 RQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+ + K L V+ L+ LG T W VN+R+ +I R W SG + +
Sbjct: 611 AETTAYLRKAADLGNLNEVYDGLNVLGKTPWTVNRRVFEIITRYWNSGEEFLDIPPIMEE 670
Query: 499 P-LPEKPNTDDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
P LPE D E K +++ K+++A + + SQRCD KL +AR E+ F+ PH
Sbjct: 671 PNLPEPLPVDAEPAQKFEYQRKLRSALNEAASLRSQRCDTNYKLEIARGFLGEKVFF-PH 729
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGRAYP+ P+ NHLG+DL R + F EG LG+ GL WLKIHLAN+Y GVDK
Sbjct: 730 NVDFRGRAYPISPHFNHLGNDLTRSLFLFWEGRELGERGLEWLKIHLANVY--GVDKAPL 787
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
RV F ++L+++F+SA P + WW AE P+Q L C L EA + +P +SHI
Sbjct: 788 NERVQFVNDNLENVFESARNPYDTDAWWKKAEKPWQALGVCFELEEAYKLENPTQYVSHI 847
Query: 677 PVH 679
P+H
Sbjct: 848 PIH 850
>gi|328769272|gb|EGF79316.1| hypothetical protein BATDEDRAFT_35464 [Batrachochytrium
dendrobatidis JAM81]
Length = 1404
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 201/360 (55%), Gaps = 16/360 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ---PPVDQLGDSPPDIRPAFVH-TLKSFTKEALKGR 382
WG++A VK+G L+ LL++ I P ++ G PAF H L S+ G+
Sbjct: 598 WGEEAKVKIGTFLLHLLVQAGKIAVQVPDPNKPGHKMSMDVPAFEHKVLSSY------GK 651
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
YG I V + +E ++ ++PMLV P W NRGG+ S ++R +
Sbjct: 652 TYGYIIRHAAVMEMMENGCASVLPLHLPMLVQPRPWLSCNRGGYLQHGSQLVRILNNPEH 711
Query: 443 RETIKMTPRSQLEP-VFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
RE +K + P V +A+D LGST W +N I V W + +P
Sbjct: 712 REYLKAADEANHLPLVLRAVDKLGSTAWVINPIIYKVASTFWNKKESAPSIPKPIVIPEI 771
Query: 502 EKPNTDDETEIKKWKWKVKTAKK--QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
KP+ D +WK+ K K+ Q S HSQRCD+ K+ +ARK E ++PHNLD
Sbjct: 772 PKPSDYDTNPDARWKYIKKNTKRLQQISNNHSQRCDLNYKMEIARKYLGE-TIFFPHNLD 830
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGRAYPM P LNH+G+DLCRG+L+F+ PLG+ G+ WLKI ++NL G DK S + R
Sbjct: 831 FRGRAYPMPPNLNHIGNDLCRGLLKFKVAKPLGENGMRWLKIQVSNL--AGNDKASLDNR 888
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F E+H DI DSA+ PL+G+RWWL +E+P+Q LATCI L++A + +P +S I +H
Sbjct: 889 AKFAEDHRKDIIDSAEHPLDGKRWWLKSENPWQLLATCIELNQAWKCDNPLEFMSSIHIH 948
>gi|295667525|ref|XP_002794312.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286418|gb|EEH41984.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1405
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 243/484 (50%), Gaps = 36/484 (7%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
K + +PY + D +A +T+ L N + V++ +G++I +E
Sbjct: 439 KRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKSIHDE------ 492
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
F + + + L N + + + K V +K ++Q R I +
Sbjct: 493 FMAMQLRE------------LENKSRSNGRTSKFIDKLVHKGTRKAQVQWKRLIARFEQS 540
Query: 324 SKP--WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EAL 379
+P W K+G L +L+ +A + PV + P +F + +
Sbjct: 541 QRPVEWSPIVQAKIGACLALMLLSSATV--PV---FSNDPKTNKTKRSDQMAFRRVYQLE 595
Query: 380 KGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
+G R G + D +V K + ++ ++PM+ PP W GG PS V+R
Sbjct: 596 RGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARNGGFLESPSPVLRVKE 655
Query: 438 GARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQ 495
G Q ++ R L+ VF L LG T W+VN+ +L V+ W SG +A L +
Sbjct: 656 GDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKVNRGVLEVMLEAWNSGEEIANLAPET 715
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
D+P PE+PNT+D + + A S HSQRC +L +AR ++E FY P
Sbjct: 716 PDIPEPERPNTEDRDALIDYYRAKMHAANTRSSYHSQRCFQNFQLEIARAYRNET-FYLP 774
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HNLDFRGRAYPM PY N +G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S
Sbjct: 775 HNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANVF--GFDKAS 832
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
++ R F+ +HL+DI DSA L+G++WW+ A DPFQCLA CI L+ A++ P +SH
Sbjct: 833 FQEREQFSMDHLEDIRDSAINGLKGKKWWVDAADPFQCLAACIELTNAMQLEDPTKFVSH 892
Query: 676 IPVH 679
+PVH
Sbjct: 893 LPVH 896
>gi|428185822|gb|EKX54674.1| RNA polymerase, single subunit, mitochondrial [Guillardia theta
CCMP2712]
Length = 1194
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 257/478 (53%), Gaps = 55/478 (11%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKK 270
P +LPA +AVIT+H+L+ L++ G+V V+AA +GE I+ E ++ K+ +
Sbjct: 457 GPILMSLPASKIAVITIHELLSSLLSGGGQVHFVRAARTVGEGIQAELGLEHVKKAKNRF 516
Query: 271 NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-WGQ 329
+ +R+++L K ++++ ++ ++S+P W
Sbjct: 517 LLS-------------------------SRRLSALCKAHDVRKLNKLL-SRLESQPLWDA 550
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIE 388
VKVG +LIQ+LM +A + A H +++ + + KG R+ G +
Sbjct: 551 RMQVKVGAKLIQILMNSAKYKGSA------------AVTHVVQA--QMSNKGMRKKGFLA 596
Query: 389 CDPLVRKGLEK----TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
D + + LEK H + +PM++ P W ++ G + + VMR Q E
Sbjct: 597 LDQEILQDLEKQHDSVAAHNPL-LLPMIIRPFPWMSFDVGCYIQARTKVMRIVDKGLQEE 655
Query: 445 TIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE-K 503
+ + L ++ ALD L T W +N+R+L V+ W L + ++D +PE
Sbjct: 656 SCR---NHDLSRIYAALDVLSGTGWCINRRLLNVVQHAWLDDMILGEIPQKDDFAVPELD 712
Query: 504 PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
P+ D E + K +++N + HS RC + +L VA M D + F++PHNLDFRGR
Sbjct: 713 PDCIDAAESYSQYREKKRVEQRNKDLHSLRCSLINQLHVATTMSDFKEFFFPHNLDFRGR 772
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
AYP+ P+LNHLGSD+CRG+L+F + PLGK G +WLK+HLANL+ G +K+SY+ RV +T
Sbjct: 773 AYPIPPHLNHLGSDICRGLLKFSKKKPLGKKGFYWLKVHLANLF--GENKISYDDRVKWT 830
Query: 624 ENHLDDIFDSADRPLE--GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
E + I SA PL+ R++WL A+DP+Q LAT + + EA+ S P + +S++PVH
Sbjct: 831 EERMSQILHSAKNPLDSASRKFWLSADDPWQALATSMEIQEAIESGDPSTYLSNLPVH 888
>gi|225558540|gb|EEH06824.1| mitochondrial RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1397
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 209/392 (53%), Gaps = 20/392 (5%)
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQLLMETAYIQPPVD- 354
+ K V +K ++Q R I + +P W K+G L +L+ TA + P
Sbjct: 515 IDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKD 574
Query: 355 -QLGDSPPDIRPAF--VHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMP 410
+ + AF V+ L+ +G R G + D +V K + ++ ++P
Sbjct: 575 PKTNHQKQTDQAAFRRVYQLE-------RGFRVGYVHANDYIVEKLRREPLGELLAKHLP 627
Query: 411 MLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTP-RSQLEPVFQALDTLGSTK 468
M+ PP W GG PS VMR G Q ++ R L+ VF L LG T
Sbjct: 628 MVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTG 687
Query: 469 WRVNKRILGVIDRMWASGGCLAGLV-DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
W++N+ +L V+ W SG +A L + ++ PEKP+TDD +K + A +
Sbjct: 688 WKINRGVLNVMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNART 747
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
HSQRC +L +AR ++E FY PHNLDFRGRAYPM PY N +G+D CRG+L F +
Sbjct: 748 GYHSQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSK 806
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G LG +GL WLKIHLAN++ G DK S++ R F +HL+DI DSA L+G+RWWL A
Sbjct: 807 GRELGASGLRWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDA 864
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DPFQCLA CI L+ A+ P +SH+PVH
Sbjct: 865 GDPFQCLAACIELTNAMALEDPTKFVSHLPVH 896
>gi|322694289|gb|EFY86123.1| DNA-directed RNA polymerase [Metarhizium acridum CQMa 102]
Length = 1414
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 21/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP--DIRPAFVHTLKSFTKEALKGR 382
+PW +VG L++ L++ A+++ ++ P +PAF H ++ +G+
Sbjct: 562 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKEPISQKQPAFTHM-----QQPRRGK 616
Query: 383 RYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ GV+ + + + L+K G + I ++PM+V P WR N GG FL S +++
Sbjct: 617 KVGVLHFNSNLVQQLKKEPVGDY-IAKHLPMIVEPKPWRQLNEGG--FLDSRTTFVRVKS 673
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-Q 495
Q+ T + VF+ LD LG T WR+NK +L V+ W SG +A +
Sbjct: 674 GDVEQKLYTEAAIKTGDMTQVFKGLDVLGKTAWRINKNVLNVMMEAWNSGEEIANMPPLN 733
Query: 496 EDVPLPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
+ +PE+P++ + +++ W VK + + S HSQRC + L+L +AR +++ Y+
Sbjct: 734 PEFDIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFMNLQLEIARAFRNQT-MYF 792
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+D+RGRAYPM YLNH+G+D R +L+F G LG+ GL WLKIHLANLY G+DK
Sbjct: 793 PHNIDYRGRAYPMPTYLNHMGADHARAILKFARGKELGERGLRWLKIHLANLY--GLDKS 850
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
+++ R AFT +++ +I DSA PL G RWWL AED +QCLA C L AL P P +S
Sbjct: 851 NFDEREAFTNDNISNIIDSATNPLNGSRWWLKAEDAWQCLAACFELKAALELPDPTKFVS 910
Query: 675 HIPVH 679
+PVH
Sbjct: 911 QLPVH 915
>gi|402076916|gb|EJT72265.1| hypothetical protein GGTG_09131 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1501
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 205/353 (58%), Gaps = 15/353 (4%)
Query: 334 KVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDP 391
+VG L+Q +++TA I + + G + +PAFVH ++ +G++ GV+ +
Sbjct: 612 QVGAALLQAIIQTATITVVKEHPETGSLVSESQPAFVHN-----QQYKRGKKVGVLVVNK 666
Query: 392 LVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMT 449
+ + L++ R + ++PM+ P W ++RGG P+ ++R G R Q+ +
Sbjct: 667 TLVEMLKREPRADFLARHLPMVCEPEPWTRFDRGGFIESPAQMVRVKPGERDQKIYAEAA 726
Query: 450 -PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKP-NT 506
+E + + LD+LG T W++NK + GV+ +W SG LA + + +P+PE+P T
Sbjct: 727 IENGHMEQIMKGLDSLGKTAWKINKNVFGVMLDVWNSGEALANIPPLDPKIPVPEEPVAT 786
Query: 507 DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 566
+D +KW VK A+ S H RC + +L +AR ++D+ Y+PHN+DFRGRAYP
Sbjct: 787 EDPVARRKWLNAVKMAENLKSSLHGVRCFMNFQLEIARAVRDQT-IYFPHNVDFRGRAYP 845
Query: 567 MHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
+ Y NH+G+D RG++ F +G LG+ G WLK+HLAN++ G DK S R F +
Sbjct: 846 LPTYFNHMGADHVRGLMLFAKGKELGEEGFRWLKVHLANVF--GFDKASLREREKFAMEN 903
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L++I DSA PL GRRWWL EDP+QCLATC L A SP ISH+PVH
Sbjct: 904 LENIMDSATNPLTGRRWWLKGEDPWQCLATCYELKAAFESPDATKFISHLPVH 956
>gi|89148144|gb|ABD62815.1| mitochondrial single-subunit RNA polymerase [Vermamoeba
vermiformis]
Length = 992
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 172/566 (30%), Positives = 267/566 (47%), Gaps = 53/566 (9%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPL------------ 190
+ Q+ +E EA E+ AK++++L+ D+ + L L WF+PL
Sbjct: 149 KEQLYLEMEAVEREAKKFKELVDDVLKLNRGACLDPGTEFLLQWFQPLVKLLDLEKQLSL 208
Query: 191 ---------RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV 241
R ++ +++ H Y + N + +D +AVI +H+L+G +
Sbjct: 209 ADPGVHQELRASVEALGVLYNEQYLH-EYHAHTNEVASDKLAVIVIHELIGAAAGLKEQS 267
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLT-NDPEKLIKEQEKLKK 300
V QI EA++ E Q K+ +N E + P + +P + K KK
Sbjct: 268 PVRSVVQQISEAVQGEVNWQDL------KDELENPAESRATPDSAENPSGTVPA--KKKK 319
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI--QPPVDQLGD 358
RV + +L R +K W + +G RL+ LL+ A + + PV +
Sbjct: 320 RVVNFTSVNRLN--RRALKVLGSEALWSRGLKEFMGARLLALLLSVAQLREEDPVTGIFH 377
Query: 359 SPPDIRPAF-VHTLKSFTKEALKGRRYGV---IECDPLVRKGLEKTGRHMI--IPYMPML 412
+ RPAF V KE + + VR + H I PM
Sbjct: 378 A----RPAFEVSHRTQHRKEGMDSTHNPSRLSVSASEAVRARFDAMMTHFFHFIRQYPMQ 433
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
+PP W +RGG+ + + R +Q + L +++ L+ LG T WR+
Sbjct: 434 IPPRPWDSPDRGGYLAVQVPIFRYQSYEEQFRPL-FRKSDDLAVIYEGLNALGETPWRIY 492
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+R+ V+ R W GG LA + D+ D P P ++ +W ++K + N + S
Sbjct: 493 QRVYHVVKRAWEQGGDLADIPDRRDKPYPMPTALGKDS---RWYRQLKKIDQLNYDLVSL 549
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
R D LK+ VA K D+ Y+PHN+DFRGR YP+ P+LNH+GSD+ RG+L F +G PLG
Sbjct: 550 RADFLLKMEVAEKFMDK-TLYFPHNMDFRGRVYPVPPHLNHMGSDMSRGLLWFADGKPLG 608
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+ GLHWL+I LANLY G DK+ + R+ F + D I+ A RPLE RWW+ A+ P+Q
Sbjct: 609 ERGLHWLRIQLANLY--GFDKVPFSDRLDFVSKNQDKIYSCAQRPLED-RWWVAADSPWQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPV 678
LA C A+ S P S +SH+P+
Sbjct: 666 FLAACFEYYNAMHSADPHSYVSHLPI 691
>gi|327353367|gb|EGE82224.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1393
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 162/479 (33%), Positives = 234/479 (48%), Gaps = 36/479 (7%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + D +A +T+ L + + V++ +G+AI +E + K
Sbjct: 444 SPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMYLGKAIYDEYLAMQLRELEK 503
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-- 326
K + P + +KL + T KK ++Q R I + +P
Sbjct: 504 K---------------SKSPRRTSALIDKLVHKGT---KKAQVQWQRIIARFEESQRPVD 545
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W K+G L +L+ TA + PV P +F + + +G R
Sbjct: 546 WSPVVQAKIGACLASMLLSTATV--PV---STKDPSTNRTQRTDQAAFRRVYQLERGFRV 600
Query: 385 GVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA--RQ 441
G + D +V K + ++ ++PM+ PP W GG PS VMR Q
Sbjct: 601 GYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEYPSAVMRVKAGDISQ 660
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPL 500
R L+ VF L LG T W++N+ +L V+ W SG +A L + ++
Sbjct: 661 LSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGEEIANLAPENPNIIE 720
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDF 560
PEKP TDD +K + A + HSQRC +L +AR ++E FY PHNLDF
Sbjct: 721 PEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDF 779
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGRAYPM PY N +G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++ R
Sbjct: 780 RGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANVF--GYDKASFQERE 837
Query: 621 AFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F +HL+DI DSA L+G++WWL A DPFQCLA CI L+ A+ P +SH+PVH
Sbjct: 838 QFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMALEDPTKFVSHLPVH 896
>gi|322708298|gb|EFY99875.1| DNA-directed RNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1326
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 210/365 (57%), Gaps = 21/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPAFVHTLKSFTKEALKGR 382
+PW +VG L++ L++ A+++ ++ + +PAF H ++ +G+
Sbjct: 482 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKQTISQKQPAFTHM-----QQPRRGK 536
Query: 383 RYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ GV+ + + + L+K G + I ++PM+V P WR N GG FL S +++
Sbjct: 537 KVGVLHYNSNLVQQLKKEPIGDY-IAKHLPMIVEPKPWRQLNEGG--FLDSRTTFVRVKS 593
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-Q 495
Q+ T + VF+ LD LG T WR+NK +L V+ W SG +A +
Sbjct: 594 GDVEQKLYTEAAIKTGDMAQVFKGLDVLGKTAWRINKNVLNVMMEAWNSGEEIANMPPLN 653
Query: 496 EDVPLPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
+ +PE+P++ + +++ W VK + + S HSQRC + L+L +AR +++ Y+
Sbjct: 654 PEFHIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFMNLQLEIARAFRNQT-MYF 712
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+D+RGRAYPM YLNH+G+D R VL+F G LG+ GL WLKIHLANLY G+DK
Sbjct: 713 PHNIDYRGRAYPMPTYLNHMGADHARAVLKFARGKELGERGLRWLKIHLANLY--GLDKS 770
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S++ R AFT +++ +I DSA PL G RWWL AED +QCLA C L AL P P +S
Sbjct: 771 SFDEREAFTNDNIPNIIDSASNPLNGSRWWLKAEDAWQCLAACFELKAALELPDPTKFVS 830
Query: 675 HIPVH 679
+PVH
Sbjct: 831 QLPVH 835
>gi|261193289|ref|XP_002623050.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239588655|gb|EEQ71298.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239614020|gb|EEQ91007.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
ER-3]
Length = 1382
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 162/479 (33%), Positives = 234/479 (48%), Gaps = 36/479 (7%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + D +A +T+ L + + V++ +G+AI +E + K
Sbjct: 444 SPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMYLGKAIYDEYLAMQLRELEK 503
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-- 326
K + P + +KL + T KK ++Q R I + +P
Sbjct: 504 K---------------SKSPRRTSALIDKLVHKGT---KKAQVQWQRIIARFEESQRPVD 545
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W K+G L +L+ TA + PV P +F + + +G R
Sbjct: 546 WSPVVQAKIGACLASMLLSTATV--PV---STKDPSTNRTQRTDQAAFRRVYQLERGFRV 600
Query: 385 GVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA--RQ 441
G + D +V K + ++ ++PM+ PP W GG PS VMR Q
Sbjct: 601 GYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEYPSAVMRVKAGDISQ 660
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV-DQEDVPL 500
R L+ VF L LG T W++N+ +L V+ W SG +A L + ++
Sbjct: 661 LSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGEEIANLAPENPNIIE 720
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDF 560
PEKP TDD +K + A + HSQRC +L +AR ++E FY PHNLDF
Sbjct: 721 PEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDF 779
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGRAYPM PY N +G+D CRG+L F +G LG +GL WLKIHLAN++ G DK S++ R
Sbjct: 780 RGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANVF--GYDKASFQERE 837
Query: 621 AFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F +HL+DI DSA L+G++WWL A DPFQCLA CI L+ A+ P +SH+PVH
Sbjct: 838 QFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMALEDPTKFVSHLPVH 896
>gi|336270782|ref|XP_003350150.1| hypothetical protein SMAC_01041 [Sordaria macrospora k-hell]
gi|380095545|emb|CCC07018.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1407
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 212/374 (56%), Gaps = 33/374 (8%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDIRPAFVHTLKSFTK 376
++ + W KVG L+ L++TA I+ P L +PAF H +
Sbjct: 534 MEEEAWTTLIRTKVGAALLSALLDTAKIKLVREDPATKTLVTQN---QPAFSHVM----- 585
Query: 377 EALKGRRYGVI-----ECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ +G++ G I D LVR+ + + ++PM+ P W + RG + +
Sbjct: 586 QLRRGKKVGTIIPNKAVVDLLVREPVPD----FLARHLPMVTAPDPWVSFERGAYLETKT 641
Query: 432 YVMR-THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL 489
V+R +G R+Q+ T R ++ +F+ LD LG T W++N + V+ +W SG +
Sbjct: 642 PVLRLKNGEREQKLYTEAAIARGDMDQIFKGLDVLGKTGWKINHPVFKVMLEVWNSGEQV 701
Query: 490 AGLVDQEDVPLPEKP----NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
A + P+ E+P +T+D T + W +K + + S HSQRC + +L +AR
Sbjct: 702 ANIPPLN--PVFEQPAEPASTEDPTIKRSWLKALKAIENERSGLHSQRCFMNFQLEIARA 759
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
+D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN
Sbjct: 760 YRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHLRGLMLFSKGKPLGESGLRWLKVHLAN 818
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
LY G DK S + R F E +++++ +SA PL G RWWL AEDP+QCLATC L+EAL
Sbjct: 819 LY--GFDKASLQERQEFAEENIENVRESARNPLNGNRWWLKAEDPWQCLATCFELAEALE 876
Query: 666 SPSPESTISHIPVH 679
P +SH+PVH
Sbjct: 877 LEDPTKYVSHLPVH 890
>gi|400595675|gb|EJP63467.1| DNA-dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1393
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 175/559 (31%), Positives = 268/559 (47%), Gaps = 48/559 (8%)
Query: 141 LKRRQIKIETEAWEQAAKEYQD--LLADMCEQKLAPNLPYVKSLFLGWFEP-LRDAIA-- 195
L+R I E W +K+ Q + + K +L S +L E ++D IA
Sbjct: 361 LERDSISAALEKWRSQSKQLQKVGITPGLTGSKKEGSLSSYTSSWLSAMEVRIQDEIAQV 420
Query: 196 -----KDQATAQDKWKHMTYAPYFNNL-PADMMAVITMHKL-VGLLMTNAGEVRVVQAAC 248
KD T +D + Y P+ PA + AV + L G L+ + + +
Sbjct: 421 DVSEGKDVKTERD-IERCIYGPFIRQADPARLAAVTILSTLNAGALLGVDKGIAIQKIIN 479
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
I + + +Q K T ++ + N ++ + QE K+ S
Sbjct: 480 TIAKQAHEDIELQKKQKKTTRRRKVTYDASKAKPKEANSVPQITESQEATKRIEDSA--- 536
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPA 366
SKPW +VG L++ L+++A + G+ +PA
Sbjct: 537 ---------------SKPWSIQIKAQVGSFLLKALIDSAKVNVITRHPTTGERVSQYQPA 581
Query: 367 FVHTLKSFTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H ++ KG++ G +I + LV + + + ++PM+V P W+ + GG
Sbjct: 582 FTHI-----QQPRKGKKVGMLIMHNTLVEQLKREPMGDFLAKHLPMIVEPKPWKSMHHGG 636
Query: 426 HFFLPSYVMRTH-GARQQRETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
+ V+R G +QR K ++ VF+ LD LG T W++N+ +L V+ W
Sbjct: 637 FLESKTSVIRVQPGNVEQRLYAKAAVECGDMKQVFKGLDVLGQTAWQINRDVLNVMMEAW 696
Query: 484 ASGGCLAGLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
+G +A + E D+P E +T + KKW VK + + S HSQRC + L+L
Sbjct: 697 NTGEEIANMPALEPKFDIP-AEPDSTVNPALHKKWIRDVKAIENERSGLHSQRCYMNLQL 755
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+AR +++ Y+PHN+D+RGRAYPM YLNH+G+D R VL F +G PLG GL WLK
Sbjct: 756 EIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARAVLSFAKGKPLGVTGLRWLK 814
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
IHLAN+Y G+DK S+E R AF +I +SA PL G RWWL AEDP+QCLA C L
Sbjct: 815 IHLANVY--GLDKASFEEREAFANESASNIIESATNPLHGSRWWLKAEDPWQCLAACFEL 872
Query: 661 SEALRSPSPESTISHIPVH 679
AL+ P + +SH+P+
Sbjct: 873 KGALQLEDPTTYVSHLPIQ 891
>gi|448517808|ref|XP_003867858.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis Co
90-125]
gi|380352197|emb|CCG22421.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis]
Length = 1291
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 160/496 (32%), Positives = 240/496 (48%), Gaps = 58/496 (11%)
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEAI 254
D T +D+ YAP+ + A+ AVIT+ +L+ L +N G +R V+A +G AI
Sbjct: 439 DTTTTKDR---AFYAPFLTKVGAEKAAVITILELLKLNASGSNNGGMRAVKAITSVGRAI 495
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E R S + K + + G S Q+
Sbjct: 496 EMEYRT-SNLADQEYKMSVSRKVAGSS-------------------------------QM 523
Query: 315 RGIVKGHVDSK-----PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
+ IV+ +DS+ W +VG L+ LM A ++ + D PAF H
Sbjct: 524 KKIVRNSIDSQEEADPEWDHATRSRVGGVLVSFLMAIAKVKVRRQTPKGTIEDYHPAFFH 583
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHF 427
++ + + G+R+GVI+ + K L T I +PMLV P W + G
Sbjct: 584 SM-----QFVGGQRFGVIKIHNEISKNLSGTSFMETIQPQSLPMLVKPKPWDSFYGGIGL 638
Query: 428 FLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG 486
+ + ++R A + +K R L+ VF L+ LG+T W +NK++ VI W G
Sbjct: 639 YSKNALVRMKDAPETEAYVKAAAKRGNLQEVFDGLNVLGTTAWTINKKVFDVISHYWNKG 698
Query: 487 G---CLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
+ +++ P P+ D K +K ++ +S + SQRCD KL +A
Sbjct: 699 DEFLTIPPVLESAQFPPKLSPDADPSERYDHTKATIKAVREFSSSR-SQRCDYNYKLEIA 757
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R E+ Y+PHNLDFRGRAYP+ P+LNHLG DL R + F EG LG+ GL WLK+ L
Sbjct: 758 RGFIGEK-LYFPHNLDFRGRAYPISPHLNHLGGDLTRSLFLFWEGKELGERGLEWLKVQL 816
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN+Y GVDK R+ F +H+++ SA+ PLE +WW AE P+Q L+ C L+EA
Sbjct: 817 ANVY--GVDKAPISERIQFATDHIEEAIKSAEDPLE-YKWWTKAEKPWQALSVCFELAEA 873
Query: 664 LRSPSPESTISHIPVH 679
+ P P +S++PVH
Sbjct: 874 YKLPDPTKFVSYLPVH 889
>gi|342888051|gb|EGU87468.1| hypothetical protein FOXB_02053 [Fusarium oxysporum Fo5176]
Length = 1450
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 200/361 (55%), Gaps = 18/361 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W +VG L++ L+ETA I + P+ + + ++PAF H + KG+
Sbjct: 579 WSVQVRARVGSILLKSLIETAKINVVKEHPISR--ERISQLQPAFSHM-----QAPKKGK 631
Query: 383 RYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA-- 439
+ G++ +P LV + + + ++PM+ P W N GG + ++R
Sbjct: 632 KVGMLTINPELVERLKREPMGDFLAKHLPMIAEPRPWTRINEGGFLVSKASLIRVKSGDV 691
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QEDV 498
Q+ R ++ VF+ LD LG T WRVN +L V+ W SG +A + + D+
Sbjct: 692 EQKLYANAAIKRGDMDQVFKGLDVLGKTPWRVNNSVLDVMIEAWNSGDAIANMPELTPDL 751
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
+P +P D + W VK + + HSQRC + L+L +AR + ++ Y+PHN+
Sbjct: 752 QIPAEPTNSDPLLRRAWIRNVKQVENERGALHSQRCYMNLQLEIARAFR-KQVIYFPHNM 810
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
D+RGRAYP+ YLNH+G+D R +L+F EG LG+ GL WLKIHLAN+Y G DK S++
Sbjct: 811 DYRGRAYPIPTYLNHMGADHTRALLKFAEGKRLGEQGLRWLKIHLANVY--GFDKASFDE 868
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R AF ++L +I +S + PL G RWWL AEDP+QCLATC L A P P +S++PV
Sbjct: 869 REAFATDNLANITESVENPLNGSRWWLKAEDPWQCLATCFELKAAYDLPDPTEFVSNLPV 928
Query: 679 H 679
H
Sbjct: 929 H 929
>gi|452838720|gb|EME40660.1| hypothetical protein DOTSEDRAFT_74265 [Dothistroma septosporum
NZE10]
Length = 1467
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 275/582 (47%), Gaps = 71/582 (12%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A+ L++ + I + W +A +E + + Q + +L W++ L A+
Sbjct: 376 ARQERLEKTSVDIAIDRWRKADEELKKIGIHTAMQSRP-----IGALMWQWYDSLLPALE 430
Query: 196 KDQ------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLL---MTNAG- 239
K+ T + +H TY PY LP +A T+ + + N+G
Sbjct: 431 KELEEVKKTLGESVLGTPGEHDRH-TYGPYLELLPLKKVAANTILYTMAQMARGQRNSGD 489
Query: 240 -----EVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
E + Q + AIE+E K +K+ + +P +L K+
Sbjct: 490 TWKEQEAALGQITVGLANAIEDECTADMSSKQQGRKSVQN----------ARNPARLRKQ 539
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGH--------VDSKPWGQDALVKVGCRLIQLLMET 346
+ SL QK KG + W VK+G L L+ET
Sbjct: 540 A------LRSLQVAQKADSASKKKKGRSKETNQQILSQLEWPVSMKVKLGAMLTSKLIET 593
Query: 347 AYIQPPVDQ----LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKT 400
A Q PV + ++PAF+H +K KG+R G++ +P LV+ E
Sbjct: 594 A--QLPVTREHPRTKQKITQMQPAFLHRMK-----WQKGKRVGMVTPNPALLVKMQSEPL 646
Query: 401 GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTP--RSQLEPVF 458
G ++ MPM+V P W+G+ GG+ + ++R + + M R +L+ V+
Sbjct: 647 G-SLLAKRMPMVVEPKPWQGWKDGGYLHYSNDILRLPAGDKSGKDYFMAADRRKELDTVY 705
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QEDVPLPEKPNTDDETEIKKWKW 517
+ L L W+VN + V W SG +A + LP +P++ D +KW
Sbjct: 706 KGLTALSKVPWKVNHDVFKVQLEAWNSGDAIANFAPLHPIISLPPEPDSSDAVARRKWLS 765
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+VK + + S HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ PYLNH+G+D
Sbjct: 766 EVKELENKKSGLHSKRCFQNFQLEIARTVLNET-LYFPHNMDFRGRAYPIPPYLNHMGAD 824
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
R +L F EG LG+ GL WLKIHLA + G DK S RVAFTE HLDDI+DS P
Sbjct: 825 NVRSLLTFAEGRELGENGLRWLKIHLATV--AGHDKASMSERVAFTEEHLDDIYDSVRNP 882
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L+GR+WWL AED +Q LA C L++AL S P +S++PV
Sbjct: 883 LDGRKWWLEAEDAWQTLAACFELTKALDSLDPTKFVSYLPVQ 924
>gi|66827985|ref|XP_647347.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
gi|13991700|gb|AAK51466.1|AF361480_1 DNA-dependent RNA polymerase RpmA [Dictyostelium discoideum]
gi|15004256|gb|AAK73754.1| T3/T7 bacteriophage-like mitochondrial RNA polymerase
[Dictyostelium discoideum]
gi|60475225|gb|EAL73160.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
Length = 950
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 173/555 (31%), Positives = 282/555 (50%), Gaps = 69/555 (12%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++ Q +E EA + A Y+DL+ D + + ++ + + W E L + + KD AT
Sbjct: 150 LRKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNEGLTEKVQKDLAT 209
Query: 201 A-QDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEAR 259
QD A +T+ K V + + ++ +G+++ +
Sbjct: 210 KDQDA------------------AWVTILKTVSVQKCILKSLNII-----VGKSVLKD-- 244
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI--KEQEKLKKRVTSLIKKQKLQQVRGI 317
+ AT+ +E + + + LI K++ K K+++ LI L++ +
Sbjct: 245 --------RYDFATNIIIETIGVSVYAEYKSLIVKKKEPKTYKKISKLIPNSALKKFYNL 296
Query: 318 VKGHVDS---KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
++D P +D + +G L+ + + IQ + LG+ PAF T++S
Sbjct: 297 STDNLDVIVLPPESKD-IFSIGEFLVSQVFKHCTIQ---ESLGEDGSKQSPAF--TIQSH 350
Query: 375 TKEALKGRR-------YGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
++ + + +IE +R E G + PM++ PL W G +
Sbjct: 351 YANGVRTTKVIPHKNIFKLIEAGHEIR---ETGGARL----FPMVIKPLPWITPTEGPYL 403
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+MRT+G+ Q T+ S + +++AL+ LG T W +N+ + VI WA+GG
Sbjct: 404 HYKVPIMRTNGSAMQLRTL---VDSDMSLIYRALNILGETPWVINRDLYNVILEAWANGG 460
Query: 488 CLAGLVDQEDVPLPEKPNT---DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
+ + + D PE + D E + +K K + K N HS RCD KL VAR
Sbjct: 461 NIGDIPKRTDFEYPEISDDMLFDHEARKELYK-KEQRIKSLNFNLHSLRCDTNYKLEVAR 519
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
K D Y+PHN+DFRGR+YP+ P+LNHLGSD CR +L+FE+ PLG+ GL WLKIH+A
Sbjct: 520 KFLDHT-LYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVA 578
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
NLY GVDK+ R+AFTE ++++IFDS D PL G +WWL A++P+Q LA C+ L++A+
Sbjct: 579 NLY--GVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLKADNPWQTLAACMELTKAI 636
Query: 665 RSPSPESTISHIPVH 679
RS P +S++P+H
Sbjct: 637 RSGKPAEFLSNLPIH 651
>gi|255730283|ref|XP_002550066.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
gi|240132023|gb|EER31581.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
Length = 1293
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/620 (30%), Positives = 288/620 (46%), Gaps = 72/620 (11%)
Query: 90 ASESELSGSEEVQELIDQFNEKGV---------SILDSSSMLDKQPKKKGTGMGTAKYYM 140
++ES + S +V+E+ID +++ V + + S L ++ +
Sbjct: 317 STESVVQFSRQVKEIIDGLDDEQVKEDIKAGKFNHFEVYSKLQTDEQRSAFSEALETFNY 376
Query: 141 LKRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKSLFLGWF 187
+++QI+I E W+ +E Q DL L C + + +P ++
Sbjct: 377 ERQKQIEIRGIEGAKEKWKHDFEEQQKRGDLNLTKGLNAQCYEWVQEMVPIIQKELEACK 436
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQ 245
E L D D+A+ K + YAP+F + + AVIT+ +L+ L T R +
Sbjct: 437 ELLNDG---DKAS-DAKSERALYAPFFIKVDPEKAAVITILELLKLHSTGGVVNGFRAYK 492
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A +G+AIE E R+ + K +++ NN +LK +
Sbjct: 493 AVVGVGKAIEGEFRMNLQVQQENKLSSSKNN------------------SPRLKNLIRET 534
Query: 306 IKKQKLQQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR 364
IKK + D P W +VG L+ LM + ++ D+
Sbjct: 535 IKKDE------------DEIPEWDNVTRSRVGGVLVSALMTVSKVRVVKKTPEGVIKDLH 582
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYN 422
PAF H + + + G+R GVI+ + K L T + P Y+PML+ P W ++
Sbjct: 583 PAFYHGV-----QFIGGQRVGVIKVHAEISKLLTGTSFAESVQPQYLPMLIRPKPWTSFH 637
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
GG F S ++R A + +K + R L+ VF L+ LG+T W VNKR+ VI
Sbjct: 638 GGGSLFSKSPLVRMKDAPETEAYVKAASKRGNLDQVFDGLNVLGNTAWTVNKRVFDVISH 697
Query: 482 MWASGGCLAGLVD-QEDVPLPEKPNTDDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELK 539
W G + E+ LPEK D + + K + ++ + SQRCD K
Sbjct: 698 YWNKGEEFLSIPPVMEEARLPEKLPADADPQAKLDNSIALYKGLREFAGNRSQRCDYNYK 757
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L +AR E Y+PHNLDFRGRAYP+ P+ NHLG DL R + F EG LG+ GL WL
Sbjct: 758 LEIARGFIGER-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWEGKQLGEEGLRWL 816
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
K+ LAN+Y GVDK S +GRV F +++++++ SA P WW AE P+Q L+ C
Sbjct: 817 KVQLANVY--GVDKESIDGRVKFIDDNIENVIASAKDPYAPDAWWQRAEKPWQALSVCFE 874
Query: 660 LSEALRSPSPESTISHIPVH 679
L EA + P +SH+PVH
Sbjct: 875 LGEAYQLDDPTKFVSHLPVH 894
>gi|19547987|gb|AAL87357.1| At1g68990/T6L1_17 [Arabidopsis thaliana]
Length = 305
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 145/316 (45%), Positives = 197/316 (62%), Gaps = 21/316 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKK 308
KE EK +K+VT L++K
Sbjct: 288 KETEKARKQVTVLMEK 303
>gi|425767195|gb|EKV05770.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425769079|gb|EKV07586.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1288
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 255/484 (52%), Gaps = 44/484 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y + L D +A +T+ ++ + +++ A +G+ +++E +F K
Sbjct: 329 YGVFLQALDPDRLAALTLLSVMSTFSRQGMDKGIKLSILASVVGKELQDELIADTFLKRN 388
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K +++ L+ + L N +K Q +L+ R SL++K + +S W
Sbjct: 389 KSMDSS--RLKALKQTLANRKDK----QGRLRWR--SLVEK---------INAENESILW 431
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLK-SFTKEALK 380
G + VK+G L+ +L+E + + PV + P ++PAF H+ + +F
Sbjct: 432 GSRSQVKIGAVLMSMLVEVS--KAPV--WTEDPATKKRILTMQPAFDHSYQINF------ 481
Query: 381 GRRYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-G 438
G+R G I + LV + ++ ++PM+ P W G GG+ S ++RT G
Sbjct: 482 GKRSGHIHMNSKLVEIVAREPPAELLARHLPMVCKPRPWTGPRSGGYKVYESNLVRTTPG 541
Query: 439 ARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QE 496
Q +K + L+ + LD LG+T W++N+++ V+ W GG + L
Sbjct: 542 ELLQPAYLKAVLKDDGLKEIRAGLDVLGATGWKINQQVFDVMLEAWNDGGAVGKLAPLNP 601
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
D+ +PE+P+ D D K+W KV+ + S HS RC +L VAR + +E FY P
Sbjct: 602 DLQVPEQPSPDADYATQKQWHHKVREIENLRSGFHSVRCFQNFQLEVARAFR-KEVFYLP 660
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PY+N +G+D RG+L F++G LG++G+ WLKI +ANL+ G DK S
Sbjct: 661 HNMDFRGRAYPLPPYMNQMGADNSRGLLLFDKGKALGESGMRWLKIQIANLF--GFDKAS 718
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R FT NHLDD+ DSA+ L GRRWWL AEDP+Q LA C L AL+ P +SH
Sbjct: 719 MSEREQFTMNHLDDVLDSANAGLHGRRWWLQAEDPWQLLAACCELRNALQLSKPTEYVSH 778
Query: 676 IPVH 679
+P+H
Sbjct: 779 LPIH 782
>gi|294656558|ref|XP_002770286.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
gi|199431562|emb|CAR65641.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
Length = 1312
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 265/552 (48%), Gaps = 58/552 (10%)
Query: 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQA 199
M KR I + Q K Y DLL + E+ + L +P + KD+A
Sbjct: 400 MQKRGAINLHKSLNVQLFKWYSDLLPYVEEEVNQCKKILDGEISLDNVKPDAKNLMKDRA 459
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENE 257
YAPY +P M VIT+ +L+ L T +R +A +G+A+E E
Sbjct: 460 Y---------YAPYLTLIPPKKMCVITILELLKLNSTGGIVDGMRTARAVISVGKALELE 510
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
+ Q+ K+ EG S KK T+ K+ L+Q R
Sbjct: 511 YKSQNLMKA-----------EGRSLS---------------KKLKTTSQWKKLLRQRRDY 544
Query: 318 VKGH-VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLK 372
K + + W KVG L LL+ A + PV G ++PAF HT
Sbjct: 545 NKQDPIANNEWDYPIYAKVGSVLTSLLIHVAKV--PVKGTDPTTGKEVKGMQPAFHHTY- 601
Query: 373 SFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYM-PMLVPPLNWRGYNRGGHFFLP 430
+ L+G+R GV++ LVR+ + + P M PMLVPP W YN GG+ F
Sbjct: 602 ----QYLQGQRLGVLKVHKSLVRQLAGNVLGNSVQPQMLPMLVPPRPWTSYNDGGYLFSQ 657
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
+ ++R + + +K ++ L+ LG T W VN+ + +I + W +G
Sbjct: 658 NSLVRIKDSAETNAYLKAASDLDNLEIYDGLNVLGDTAWTVNRNVFNIISKFWNTGEKFL 717
Query: 491 GL---VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ V++ ++P + P + E +++ KV+ A + + SQRCD KL +AR
Sbjct: 718 DIPPIVEEPELP-KQLPMNAEPFEKAEYQRKVRKAMNEAASARSQRCDTNYKLEIARGFL 776
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
E+ ++PHN+DFRGRAYP+ +LNHLG+D+ R + F EG +G GL+WLKIHLAN+Y
Sbjct: 777 GEK-LFFPHNVDFRGRAYPLSAHLNHLGNDMTRSLFLFWEGREVGDEGLNWLKIHLANVY 835
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G+DK R+ F +++L++I + A P+ G WW E P+Q L+ C L+EA +
Sbjct: 836 --GIDKAPLNERIQFVDDNLENILECARNPINGSGWWKKGEKPWQVLSVCFELNEAFQLD 893
Query: 668 SPESTISHIPVH 679
P +SHIPVH
Sbjct: 894 DPTKFVSHIPVH 905
>gi|189206131|ref|XP_001939400.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975493|gb|EDU42119.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1430
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 174/572 (30%), Positives = 263/572 (45%), Gaps = 68/572 (11%)
Query: 144 RQIKIETEAWEQAAKEYQ---DLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD--- 197
RQ+++E + + A ++ + LAD+ + P ++++ W++ L A K
Sbjct: 368 RQLQMEQDGVDAAVNRWKHENEKLADIGIHGVMNTKP-IQAMMYSWYKALVPAFKKRIEH 426
Query: 198 -----QATAQDKWKH--MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE----VRVVQA 246
+++D K +Y + + +A IT+ + + N GE ++V
Sbjct: 427 AKQVLSESSKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSAL 486
Query: 247 ACQIGEAI------ENEARIQSFFKSTKKKNATD--NNLEGDSEPLTNDP--EKLIKEQE 296
+ IG I E++AR +F K +K+ D N L + L +P + + +
Sbjct: 487 STSIGSEIQDYLDSESQARRDAFLKKQRKQTRLDLFNKLSKNPPVLQTEPGQRESVASLD 546
Query: 297 KLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+K L+ + KL G ++ L+ A +
Sbjct: 547 SFEKTTIPLVARTKL------------------------GAMCLENLLSCATLTVTAKDP 582
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-MPMLV 413
+ G+ AF H + +G++ G I V L H I +PM++
Sbjct: 583 RTGEEKSRSMAAFHHQVGFH-----QGKKLGFIVPHHEVLTKLRTESVHSIHNVRLPMVI 637
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTP--RSQLEPVFQALDTLGSTKWRV 471
P W + GG++ LP V+R G + + + V LD LG W++
Sbjct: 638 EPKPWSSFEDGGYYTLPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQI 697
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT--DDET--EIKKWKWKVKTAKKQNS 527
N + V+ R W +G L L+ ++ V E+P D T E KW +K Q
Sbjct: 698 NAPVFDVMARAWNAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNQIG 757
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
HSQRC +L AR +E+ Y+PH++DFRGRAYP+ P LNH+GSD+ RG+L+F
Sbjct: 758 GLHSQRCFQNFQLETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAH 817
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G LG GL WLKIHLANLY G DK S R F ++LD+I DSA PL+GRRWW A
Sbjct: 818 GKELGTVGLQWLKIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKA 875
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
EDP+QCLA CI L AL SP P IS +PVH
Sbjct: 876 EDPWQCLACCIELKNALDSPDPARFISQLPVH 907
>gi|449295533|gb|EMC91554.1| hypothetical protein BAUCODRAFT_38669 [Baudoinia compniacensis UAMH
10762]
Length = 1478
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 238/489 (48%), Gaps = 52/489 (10%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAG--------EVRVVQAACQIGEAIENEARIQ 261
YAPY LP D +A T+ +V E+++ +G+ +E EA
Sbjct: 462 YAPYLELLPMDKVAANTILFVVSRFAGGKDRHTKKYEVEMKLSHLTTSLGKQLEAEADAS 521
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+ K++ + K KR + K L+ +G
Sbjct: 522 RSVEQMKERRQGG--------------------KIKASKRRQGMFAK-GLKHKKGANSTL 560
Query: 322 VDSK-PWGQDALVKVGCRLIQLLMETAYIQPPVDQ----LGDSPPDIRPAFVHTLKSFTK 376
V+S W DA VK+ LIQ L E+A Q PV + ++PAF+H +K
Sbjct: 561 VESDDKWPLDAKVKLCAMLIQKLKESA--QLPVTREHPRTKQKITQLQPAFLHRIKYVL- 617
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
G++ G++ +P + LE +I MPM+V P W G++ GG+ + V+R
Sbjct: 618 ----GKKVGIVAPNPALIDKLESEPMGSVIAKRMPMIVEPKPWTGWSVGGYIHYANDVLR 673
Query: 436 TH-GARQQRETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG---GCLA 490
G + R+ + + ++ L LG W+V+ + V W SG A
Sbjct: 674 LGPGDKSGRDYFHAAHNKGDMTQLYAGLTALGKVPWKVHPDVFRVQIEAWNSGEEIANFA 733
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
L Q DVP PE P D E + W V + + S HS+RC ++ VAR M +E
Sbjct: 734 PLHPQIDVP-PEPP-AGDMAERRNWLKAVDDVENKRSGAHSKRCFQNFQMEVARAMLNET 791
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
Y+PHN+DFRGRAYP+ PYLNH+G+D RGVL F EG PLG GL WLKIHLA + G
Sbjct: 792 -IYFPHNMDFRGRAYPIPPYLNHMGADNVRGVLVFAEGKPLGDKGLRWLKIHLATV--AG 848
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK S R+ +TE+HLDDI+DS PL GRRWWL AED +Q LA C L++AL SP P
Sbjct: 849 YDKASMSERLQYTEDHLDDIYDSVRNPLNGRRWWLKAEDSWQTLAACFELTKALDSPDPT 908
Query: 671 STISHIPVH 679
+S +P+
Sbjct: 909 KFLSTLPIQ 917
>gi|330812904|ref|XP_003291356.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
gi|325078456|gb|EGC32106.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
Length = 862
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 207/355 (58%), Gaps = 27/355 (7%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH------TLKSFTKEALKGRRYGVI 387
K+G I ++E I+ +D D + PAF+ ++++F A + Y +I
Sbjct: 223 KIGNFFINGILENCKIRESLD---DENSPLVPAFISEARYSKSVRTFVINAHENV-YKLI 278
Query: 388 ECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
R E G + PM++ PL W G + ++R +G + Q I
Sbjct: 279 NDGHSAR---EAGGARL----YPMVIKPLPWISPFEGPYLHYKVPILRANGNKSQ---IT 328
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL---VDQEDVPLPEKP 504
+S L +++AL+ LG+T W +NK+ +I+ W +GG +A + ++ E PLPE
Sbjct: 329 SLLKSDLSQIYRALNVLGNTPWVINKKAYDIINEAWEAGGDIADMPRKINYEYPPLPEDV 388
Query: 505 NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRA 564
T + K + + K +K N + HS R D + KL VA K D Y+PHNLDFRGR+
Sbjct: 389 LTSLSSRKKHFLLEKKISK-LNKDLHSLRSDCKYKLEVAEKFLDH-TIYFPHNLDFRGRS 446
Query: 565 YPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTE 624
YP+ P+LNHLGSDLCR +L+FE+ PLGK GL WLKI ++NLY GVDK+S+ R+ FT
Sbjct: 447 YPIPPHLNHLGSDLCRSLLKFEKSKPLGKRGLDWLKIQISNLY--GVDKVSHADRIKFTT 504
Query: 625 NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
++++I DSAD PL+G+RWWL A+ P+Q LA CI L+EALRSP+PE S++P+H
Sbjct: 505 ENIENIMDSADNPLKGKRWWLNADYPWQALAACIELTEALRSPNPEEFCSNLPIH 559
>gi|89148154|gb|ABD62820.1| mitochondrial single-subunit RNA polymerase [Stygamoeba sp.
ruffled]
Length = 661
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 188/323 (58%), Gaps = 19/323 (5%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIECDP----LVRKG-LEKTGRHMIIPYMPMLVPPLNWRG 420
AF HT TK R+ G I C P +R G L + H + +PM+VPP W
Sbjct: 55 AFKHTYTYTTK-----RKVGAITCAPSVLQTIRDGHLAQEANHARM--LPMVVPPKPWTA 107
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
+ GG+ + S VMR +R Q + + T + L V+++LD L + W++NKR+L V
Sbjct: 108 PDVGGYLVVKSNVMRVRDSRLQWDMLSKT-GTDLSNVYRSLDELSAVPWKINKRVLRVAQ 166
Query: 481 RMWASGGCLAGLVDQEDVPLPEKPNTD---DETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
+W GG + L + D+PLPE P+ D E + ++ ++ N++ HS RCD
Sbjct: 167 ELWQRGGGIGDLPSRTDLPLPEAPDNYKDMDPAERSAYYRHLRRQQRANADLHSLRCDTT 226
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
LKL VA + ++ + FY+PHN+DFRGR YP+ P+LNHLGSDLCRG+L F EG LG GL
Sbjct: 227 LKLGVAEQFQNLDRFYFPHNMDFRGRTYPIPPHLNHLGSDLCRGLLCFSEGRELGPNGLG 286
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLK+ LANL+ G +K S+ R F + ++ + +A P WW A+DP+Q L+TC
Sbjct: 287 WLKVQLANLF--GNNKCSFADRQRFADENMARVLATAADP-ATETWWHAADDPWQALSTC 343
Query: 658 INLSEALRSPSPESTISHIPVHM 680
L++AL SP P +S++P+HM
Sbjct: 344 YELTDALASPDPARHVSYLPIHM 366
>gi|346319151|gb|EGX88753.1| mitochondrial DNA-directed RNA polymerase, putative [Cordyceps
militaris CM01]
Length = 1392
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 204/366 (55%), Gaps = 21/366 (5%)
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQP----PVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
S+PW +VG L++ L+++A ++ P G+ +PAF H ++
Sbjct: 537 SQPWSMQIKAQVGAFLVKALIDSAKVKAIKRHPTS--GELVSQYQPAFTHI-----QQPR 589
Query: 380 KGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
KG++ G +I + LV + + + ++PM+V P WR N GG + V+R
Sbjct: 590 KGKKVGMLIMHNTLVEQLKREPLGDFLAKHLPMIVEPKPWRNMNDGGFLESKTSVIRVQP 649
Query: 438 GARQQRETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G +QR K ++ VF+ LD LG T W++N+ +L V+ W SG +A + E
Sbjct: 650 GNVEQRLYAKAAVDCGDMKQVFKGLDVLGQTAWQINRGVLNVMMEAWNSGEEIANMPALE 709
Query: 497 ---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
DVP E +T + KKW +K + + S HSQRC + L+L +AR +++ Y
Sbjct: 710 PKFDVP-AEPDSTANPALHKKWIRDIKAIENERSGLHSQRCYMNLQLEIARAFRNQT-VY 767
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+PHN+D+RGRAYPM YLNH+G+D R +L FE+G PLG+ GL WLKIHLAN+Y G+DK
Sbjct: 768 FPHNVDYRGRAYPMPTYLNHMGADHARALLSFEKGKPLGETGLRWLKIHLANVY--GLDK 825
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S+E R AF I +SA PL G RWWL AEDP+QCLA C L AL P + +
Sbjct: 826 ASFEEREAFANESASHIIESATNPLNGSRWWLKAEDPWQCLAACFELKGALELEDPTTYV 885
Query: 674 SHIPVH 679
S +P+
Sbjct: 886 SRLPIQ 891
>gi|255953185|ref|XP_002567345.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589056|emb|CAP95178.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1353
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 251/481 (52%), Gaps = 38/481 (7%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y + L D +A +T+ ++ + +++ A +G+ +++E ++ K
Sbjct: 416 YGVFLQALDPDRLAALTLLSVMSCFSRQGMDKGLKLSAIASIVGKELQDEIIADTYLK-- 473
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K K+ + L+ E L N +K Q +L+ R SL++K + +S W
Sbjct: 474 KNKSVDPSRLKALKETLANRKDK----QGRLRWR--SLVEKMNAED---------ESIIW 518
Query: 328 GQDALVKVGCRLIQLLMETA----YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
G + VKVG L+ +L+E A + + PV + +++PAF H+ + G+R
Sbjct: 519 GSRSQVKVGGVLMSMLVEVAKAPVWTEDPVTK--KRTLNMQPAFDHSYQIHF-----GKR 571
Query: 384 YGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQ 441
G I +V ++ ++ ++PM+ P W G GG+ S ++RT G
Sbjct: 572 SGHIHMHSKIVDIVAKEPPAEVLARHLPMVCKPKPWTGPRSGGYKIYESSLVRTTPGELL 631
Query: 442 QRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QEDVP 499
Q +K + L+ + LD LG T WR+N+++ V+ W G + L D+
Sbjct: 632 QPAYLKAVLKDDGLKEIRAGLDVLGGTGWRINQQVFEVMLEAWNDGKAVGKLAPLNPDLQ 691
Query: 500 LPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
PEKP+ D + I++ W KV+ + S HS RC +L VAR + +E FY PHN+
Sbjct: 692 APEKPSPDADYAIQREWNRKVRETENLRSGFHSVRCFQNFQLEVARAFR-KETFYLPHNM 750
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYP+ PYLN +G+D RG+L F++G LG +G+ WLKI +ANL+ G DK S
Sbjct: 751 DFRGRAYPLPPYLNQMGADNSRGLLLFDKGKALGPSGMRWLKIQIANLF--GFDKASMSE 808
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R FT +HLDD+ DSA+ L GRRWWL AEDP+Q LA C L AL+ P +SH+P+
Sbjct: 809 REQFTMDHLDDVLDSANTGLRGRRWWLQAEDPWQLLAACCELRNALQLSEPTEYVSHLPI 868
Query: 679 H 679
H
Sbjct: 869 H 869
>gi|320593395|gb|EFX05804.1| mitochondrial DNA-directed RNA polymerase [Grosmannia clavigera
kw1407]
Length = 1496
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 205/354 (57%), Gaps = 15/354 (4%)
Query: 333 VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRYGVIECD 390
KVG L+ +L+ETA + + P+ + +F++ + +G++ G++ +
Sbjct: 565 AKVGAALLSMLLETAKVTAVKEH-----PETKTLISQQQPAFSRLNQLKRGKKVGMLIAN 619
Query: 391 PLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMT 449
P + + +++ R + ++PM+V P W + +GG P+ ++R +R+ ++
Sbjct: 620 PTLVELMKREPRADFLARHLPMVVEPAPWTRFYKGGFLESPAPLVRVKDSRKDQKMYAEA 679
Query: 450 P--RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QEDVPLPEKPNT 506
R ++ V + LD LG T W+VN+ + V+ W +G +A + D+ +P +P++
Sbjct: 680 AIQRGDMDQVLRGLDVLGRTAWKVNRPVFAVMLEAWNTGEEIAEIPPLTPDISVPAEPDS 739
Query: 507 -DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
+D + ++W VK A+ Q S HS RC ++ +AR +D+ FY+PHN+DFRGRAY
Sbjct: 740 SEDPMKRRQWLKAVKAAENQRSGLHSVRCFTNFQMEIARAFRDQT-FYFPHNVDFRGRAY 798
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+ PY NH+G+D RG+L F +G LG++GL WL++HLAN++ G DK S R AF
Sbjct: 799 PIPPYFNHMGADNVRGLLTFAKGKQLGESGLRWLQVHLANVF--GYDKASLSDRAAFAME 856
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+LD I DSA PL G+RWWL AEDP+QCLA C L AL P + SH+PVH
Sbjct: 857 NLDKIRDSATAPLTGQRWWLEAEDPWQCLAACFELKAALDLEDPTTYESHLPVH 910
>gi|302902552|ref|XP_003048669.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
gi|256729603|gb|EEU42956.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
Length = 1342
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 201/363 (55%), Gaps = 18/363 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQP-PVDQLG-DSPPDIRPAFVHTLKSFTKEALKGR 382
K W +++G L++ LMETA + +QL + ++PAF H KG+
Sbjct: 500 KVWSTTVRIRIGSILVKSLMETAEVNVIKQNQLTREKISQVQPAFSHM-----HAMRKGK 554
Query: 383 RYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRTH 437
+ GV +P LV + + + ++PM+ P W+ N GG FL S V +++
Sbjct: 555 KIGVFALNPFLVEQFKREPVGDFLAKHLPMIAEPQPWKNMNTGG--FLQSKVSLVRIKSG 612
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
Q+ T R ++ VF+ LD LG T WR+N ++L V+ W +G +A +
Sbjct: 613 DDEQKLYTKAAIQRGDMDQVFKGLDVLGKTPWRINDKLLDVMVEAWNTGHEIANIPALNP 672
Query: 498 V-PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
V P +P T D + W +K+ + S HSQRC + L+L +AR + ++ Y+PH
Sbjct: 673 VLQSPPEPETPDPLVRRTWMRALKSVENHRSALHSQRCFMNLQLEIARAFR-KQVIYFPH 731
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+D+RGRAYP+ YLNH+G+D R +L+F G LG+ GL WLKIH+AN+Y G DK S+
Sbjct: 732 NVDYRGRAYPLPTYLNHMGADHMRSLLKFANGKELGETGLRWLKIHMANVY--GFDKASF 789
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R AF ++LD I +SA PL G RWWL EDP+QCLA C L A P P +S++
Sbjct: 790 DEREAFATDNLDKIIESATNPLHGSRWWLKGEDPWQCLAACFELKAAHDLPDPTKFVSNL 849
Query: 677 PVH 679
PVH
Sbjct: 850 PVH 852
>gi|328851510|gb|EGG00664.1| hypothetical protein MELLADRAFT_50335 [Melampsora larici-populina
98AG31]
Length = 854
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 247/484 (51%), Gaps = 36/484 (7%)
Query: 215 NNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATD 274
N+L A + V + ++ +T+ + + +G++IENE QS KS + N
Sbjct: 24 NSLLAKVAVVEVIREMTNSTITDGA--KSIGLFIAMGKSIENEWYAQSV-KSIPELNKKL 80
Query: 275 NNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVK 334
+ S+P D K L K V L K++ + + + W + K
Sbjct: 81 LHTIKSSQPEVGDVPK------SLDKIVRQLWKREIGKYAGDLAAVQGEHTDWTINQRAK 134
Query: 335 VGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
VG L++ L++TA I + V G + +PAF T + F G+R GV + + V
Sbjct: 135 VGAMLMKGLLQTAKITRSQVMPDGSIYKEEQPAFYQTTQYF-----DGKRVGVTKLNEAV 189
Query: 394 RKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR 451
+ L++ ++ + Y+PM+ PPL W G + + MRT + +Q + R
Sbjct: 190 AERLDRDPANVTLHPRYLPMISPPLPWTSPKNGAYLVHAAPFMRTKDSPEQHLHVMEAHR 249
Query: 452 -SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--------VDQEDVP--- 499
+ L+ +FQALD LG T W +N+ + V+ +W SG LAG+ +D D+
Sbjct: 250 LNGLDDIFQALDKLGQTAWAINRPVFDVMAVVWNSGKELAGIPVRDPHLNLDVSDLQSEL 309
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQ----NSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
L P D E + + + K + + QRC + +L +AR +E FY+P
Sbjct: 310 LKNDPLEDGSQESPRMEGERKEIYRSLLATRRSAYGQRCSVNYQLEIARAYLNET-FYFP 368
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ LNH+G D+ RG+L F E LG+ GL WLK+HLAN G DK S
Sbjct: 369 HNVDFRGRAYPLPANLNHIGDDISRGLLTFAERKELGERGLFWLKVHLAN--KAGYDKAS 426
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R+AFTE HL DI DSAD PL+G WWL +EDP+Q LA CI L+EALRS P S
Sbjct: 427 LDERLAFTEGHLKDINDSADHPLDGPGWWLKSEDPWQTLAACIELTEALRSDDPTKYKSR 486
Query: 676 IPVH 679
+PVH
Sbjct: 487 LPVH 490
>gi|149244242|ref|XP_001526664.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449058|gb|EDK43314.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1307
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 182/616 (29%), Positives = 285/616 (46%), Gaps = 77/616 (12%)
Query: 98 SEEVQELIDQFNEKGVSILDSSSM--------LDKQPKKKGTGMGTAKYYMLKRRQIKIE 149
++EV+++++ +E S ++S + L+ +KK ++ ++RQI E
Sbjct: 332 AKEVEKIVEDLDEDVKSEINSGKLDYYEIYNKLETAEQKKQFNRALDEFNHDRQRQI--E 389
Query: 150 TEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPL-----------RDAIA 195
E A ++++ D E +L K L WF+ L RD I
Sbjct: 390 VRGMEGAREKWKH---DFEEATKRGDLNMSKGLNAKCYEWFQELMPLIKREQDLCRDLIN 446
Query: 196 KD----QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D Q + +D + YAPY +PA+ AVIT+ ++ N +R+ Q
Sbjct: 447 GDKSAKQGSTEDARERALYAPYLIQVPAERAAVITILDVLRQHAANTSNKGMRISQTMAG 506
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G++ E E+++ K K A+ K +L++ + ++KQ
Sbjct: 507 VGKSFEAESKVSKLAKKDAKLFAS----------------KKFAGSTQLQRVIRKSLEKQ 550
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
+G+V W K+G L+ LM +A ++ D G I PAF H
Sbjct: 551 ---DDKGLV--------WDPLIRSKIGGVLLSFLMSSAKVKVTRDVDGKKESAIHPAFFH 599
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGYNRGGHF 427
++ + G + G+ VRK L I+P MPMLV P W Y GG
Sbjct: 600 SVTVNS-----GSKSGMFNIHSEVRKVLSGNQFSDTIMPQSMPMLVEPKPWSSYYGGGSL 654
Query: 428 FLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG 486
+ ++R + + +K R L VF L+ LGST W +N++I V+ W +G
Sbjct: 655 YSEESLIRLKESPETSAYVKAAAKRGNLTEVFDGLNVLGSTPWTMNRKIFDVVSHYWNTG 714
Query: 487 G---CLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
+ + DQ + LP +P T D +I ++ A ++ + S+RCD KL +A
Sbjct: 715 EEYLTIPPVSDQAN--LPARPETMDPRQIFEYDKAFNKAAREFASNRSRRCDYNYKLEIA 772
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R E+ Y+P NLDFRGRAYP+ P+LNHLG D+ R + F +G LGK GL WLK+ L
Sbjct: 773 RAYLGEK-LYFPCNLDFRGRAYPITPFLNHLGGDITRSLFLFWDGKELGKRGLEWLKVQL 831
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN+Y G+DK R+ F E L+D SA+ P +WW AE P+Q L+ C L+EA
Sbjct: 832 ANVY--GIDKAPLSERIQFVEERLEDAIKSAEDPY-NNKWWTKAEKPWQALSVCFELAEA 888
Query: 664 LRSPSPESTISHIPVH 679
+ P +SH+PVH
Sbjct: 889 YKLEDPTKFVSHLPVH 904
>gi|407919789|gb|EKG13012.1| DNA-directed RNA polymerase bacteriophage type [Macrophomina
phaseolina MS6]
Length = 1456
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 189/367 (51%), Gaps = 29/367 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVD--------QLGDSPPDIRPAFVHTLKSFTKEA 378
W KVG + ++E A I PV QL + P A V++
Sbjct: 558 WAPLIKAKVGALCLSKILEAAKI--PVTREEKETRRQLTSNEPAFYHATVYS-------- 607
Query: 379 LKGRRYGVIECDPLVRKGLEKTG-RHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
GR+ G+I V L + R PM+V PL W GY RGG+ P +++
Sbjct: 608 -AGRKSGMIRLHQQVLDKLRREPMRGSFGTKYPMIVEPLPWTGYRRGGYLRYPEPIIKEK 666
Query: 438 GARQQRETIKMTP--RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
+ M + ++ V L LG T W+VN+ + V+ W +G + G +
Sbjct: 667 KQDDAQRIYAMAAIEKGDMDQVLAGLSVLGKTAWKVNRDVFKVVVEAWNTGEPI-GKIAP 725
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK---HSQRCDIELKLSVARKMKDEEGF 552
E+ + P E K + K+ ++ K HSQRC +L VAR KDE F
Sbjct: 726 ENPKMEYPPEPGPEASKKDKALYLNEKKRIDNAKMSYHSQRCFQNFQLEVARAFKDEV-F 784
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+PHN+DFRGRAYP+ P LNHLG+DL RG+L F +G LG GL WLKIHLAN+Y G D
Sbjct: 785 YFPHNMDFRGRAYPIPPLLNHLGADLARGLLTFAKGKQLGPVGLSWLKIHLANVY--GYD 842
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
K S + R AF H+ DI+DS + PL GR+WWL AEDP+QCLATC L A SP P
Sbjct: 843 KASLKDREAFAMEHIQDIYDSCENPLTGRKWWLKAEDPWQCLATCFELKHAFDSPDPSQY 902
Query: 673 ISHIPVH 679
ISH+PVH
Sbjct: 903 ISHLPVH 909
>gi|389643156|ref|XP_003719210.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
gi|351638979|gb|EHA46843.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1422
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 202/360 (56%), Gaps = 15/360 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W + +G L+ L++ A I + P+ R +F + + +G++Y
Sbjct: 532 WPASIRLTIGSVLLSSLVDVATIT-----VTKEHPETRETISAEQPAFARSIQYKQGKKY 586
Query: 385 GVIECD-PLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQ 442
G + + LV+ + + + + ++PM+ P W +++GG+ P++++R G + Q
Sbjct: 587 GTLAPNKSLVQLMMREPRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQ 646
Query: 443 RETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ + R +E V + LD LG W +NK +L V+ ++W SG + G+ D+
Sbjct: 647 KLYAEAAMARGDMEQVAKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKA 706
Query: 501 PEKPNTDDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
PE+P+ ++ ++ +W ++K + + HSQRC +L +A +D+ Y+PHN+D
Sbjct: 707 PEEPSPSEDPMVRFRWIRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVD 765
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGRAYP+ YLNH+G+DL R +L F++ PLG+ GL WLK+HLAN+Y G DK S R
Sbjct: 766 FRGRAYPLPIYLNHIGADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSER 823
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F +H++DI DSA PL G+RWWLGAEDP+QCLATC L A P P +PVH
Sbjct: 824 AQFALDHIEDIVDSATNPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVH 883
>gi|340516609|gb|EGR46857.1| predicted protein [Trichoderma reesei QM6a]
Length = 1298
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 204/362 (56%), Gaps = 17/362 (4%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI---RPAFVHTLKSFTKEALKGR 382
PW +VG L+Q+LME+A I V++ +S I +PAF H +S + KG+
Sbjct: 466 PWSLQIKAQVGSILLQMLMESAKINVVVER-SESKELISQYQPAFNH--QSVLR---KGK 519
Query: 383 RYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH--GA 439
+ G + + LV + + I ++PM+V P W+ + GG + +R
Sbjct: 520 KVGALFFNTRLVEQLKREPVGDFIAKHIPMVVEPKPWQSFTEGGFLDSTTSFVRVKPGDV 579
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD-QEDV 498
Q+ + R + VF+ LD LG T W +NK L V+ W SG +A + ++
Sbjct: 580 EQKLYSNAAIKRGDMTQVFKGLDVLGKTPWIINKDTLNVMMEAWNSGEEIANIPPLNPNL 639
Query: 499 PLPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+P +P++ + ++K W VK + + S HSQRC + L+L +AR +++ Y+PHN
Sbjct: 640 TIPPEPDSSADPLVRKNWIRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFPHN 698
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
+D+RGRAYPM YLNH+G+D R +L+F G LG GL WLKIHLAN+Y G+DK S++
Sbjct: 699 VDYRGRAYPMPTYLNHMGADHARAILKFARGKELGVRGLRWLKIHLANVY--GLDKASFD 756
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R AF + ++ +I DSA PL G RWWL EDP+QCL+ C L AL P P +SH+P
Sbjct: 757 EREAFADENVANIIDSATNPLNGSRWWLKGEDPWQCLSACFELKAALELPDPTKFVSHLP 816
Query: 678 VH 679
VH
Sbjct: 817 VH 818
>gi|67901244|ref|XP_680878.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|40742605|gb|EAA61795.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|259483938|tpe|CBF79737.1| TPA: Putative DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q70TF3] [Aspergillus
nidulans FGSC A4]
Length = 1391
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 160/496 (32%), Positives = 244/496 (49%), Gaps = 51/496 (10%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
+ + Y PY + + +A +T+ + L N + +++ A IG + E +Q
Sbjct: 424 ERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQRM 483
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI-----V 318
+ KK+ + + + KLIK+ + ++ +++GI +
Sbjct: 484 VERRKKEMNSAHRV------------KLIKQ---------IFLGRKDRDKLKGINWKNAL 522
Query: 319 KGHVDSKP---WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR-------PAFV 368
K +P W KVG L+ LL + A + PV++ + R P F
Sbjct: 523 KSMEQEEPDIVWATAIKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQ 582
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHF 427
H+ + GRR G I +P + K L + ++ +PML P W+GY G +F
Sbjct: 583 HSY-----QITWGRRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYF 637
Query: 428 FLPS-YVMRTHGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
+ + +V T G Q +K + L+ + + LD LG T W +N+ + V+ W +
Sbjct: 638 YHQNLFVRSTPGESLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNT 697
Query: 486 GGCLAGLVDQEDVPLPE-KPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
G +A L + KP+ ++ E +K W KV+ + Q HSQRC ++ VA
Sbjct: 698 GEPIADLAPLDPDLPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVA 757
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R +E FY PHN+DFRGRAYP+ PYLN + +D RG+L F E PLG++GL WLKI +
Sbjct: 758 RSYLNET-FYLPHNMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQI 816
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
ANL G DK S R F +HLDD+ DSA+ L GRRWWL AEDP+QCLA C L A
Sbjct: 817 ANL--AGFDKASLSEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNA 874
Query: 664 LRSPSPESTISHIPVH 679
L+ P+P S +P+H
Sbjct: 875 LQHPNPTEYASRLPIH 890
>gi|350636444|gb|EHA24804.1| hypothetical protein ASPNIDRAFT_48810 [Aspergillus niger ATCC 1015]
Length = 1367
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 195/365 (53%), Gaps = 25/365 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAY-----QINWGRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRTTP 642
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G Q +K + LE + Q LD LG+T W +N+ + V+ W SG +A L E
Sbjct: 643 GETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNSGEPVADLAPLE 702
Query: 497 DVPLPE-KPNTDDETEI-KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
KP+ ++ E KKW ++ + + + HSQRC ++ VAR ++E FY
Sbjct: 703 PELPHPPKPSPEEGYEAEKKWDNDMREIENRRAGFHSQRCFQNFQMEVARAYRNET-FYL 761
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGRAYP+ PYLN +G+D RG+L F + PLG++GL WLK+ +ANL G DK
Sbjct: 762 PHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQIANL--SGFDKA 819
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R FT +HLDD+ DSA+ L GRRWWL A+DP+QCLA C L AL+ P P S
Sbjct: 820 SLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRNALQHPDPTQFAS 879
Query: 675 HIPVH 679
+PVH
Sbjct: 880 RLPVH 884
>gi|358373876|dbj|GAA90472.1| mitochondrial DNA-directed RNA polymerase [Aspergillus kawachii IFO
4308]
Length = 1367
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 195/365 (53%), Gaps = 25/365 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAY-----QINWGRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRTTP 642
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G Q +K + LE + Q LD LG+T W +N+ + V+ W SG +A L E
Sbjct: 643 GETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNSGEPVADLAPLE 702
Query: 497 DVPLPE-KPNTDDETEI-KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
KP+ ++ E KKW ++ + + + HSQRC ++ VAR ++E FY
Sbjct: 703 PELPHPPKPSPEEGYEAEKKWDNDMREIENRRAGFHSQRCFQNFQMEVARAYRNET-FYL 761
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGRAYP+ PYLN +G+D RG+L F + PLG++GL WLK+ +ANL G DK
Sbjct: 762 PHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQIANL--SGFDKA 819
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R FT +HLDD+ DSA+ L GRRWWL A+DP+QCLA C L AL+ P P S
Sbjct: 820 SLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRNALQHPDPTQFAS 879
Query: 675 HIPVH 679
+PVH
Sbjct: 880 RLPVH 884
>gi|134082638|emb|CAK42532.1| unnamed protein product [Aspergillus niger]
Length = 1367
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 195/365 (53%), Gaps = 25/365 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAY-----QINWGRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRTTP 642
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G Q +K + LE + Q LD LG+T W +N+ + V+ W SG +A L E
Sbjct: 643 GETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNSGEPVADLAPLE 702
Query: 497 DVPLPE-KPNTDDETEI-KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
KP+ ++ E KKW ++ + + + HSQRC ++ VAR ++E FY
Sbjct: 703 PELPHPPKPSPEEGYEAEKKWDNDMREIENRRAGFHSQRCFQNFQMEVARAYRNET-FYL 761
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGRAYP+ PYLN +G+D RG+L F + PLG++GL WLK+ +ANL G DK
Sbjct: 762 PHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQIANL--SGFDKA 819
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R FT +HLDD+ DSA+ L GRRWWL A+DP+QCLA C L AL+ P P S
Sbjct: 820 SLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRNALQHPDPTQFAS 879
Query: 675 HIPVH 679
+PVH
Sbjct: 880 RLPVH 884
>gi|398392013|ref|XP_003849466.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
gi|339469343|gb|EGP84442.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
Length = 1299
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 276/573 (48%), Gaps = 66/573 (11%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+R +++ E W++A +E + Q + S+ W + L A+ ++
Sbjct: 255 LERTSVEVAVERWKKADEELRKKGISTAMQT-----KDMSSMMWQWHQQLLPALKQELEE 309
Query: 201 AQDKW--------KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG----------EVR 242
Q + +H+ Y P+ LP + +A T+ +V + G +V+
Sbjct: 310 VQKEMADPGREHDRHL-YGPFLELLPLEHIAATTI--MVAMSSIAHGKKDTSGQYETDVK 366
Query: 243 VVQAACQIGEAIENEARIQSF----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298
+ +G IE++ + + + KK + + + P P+ K
Sbjct: 367 LSHLVSALGNTIESDCKAEKAGSQSRRGAKKARSAGRLKKSAANPALEAPDADKTSASKG 426
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI-----QPPV 353
K + S K+ L ++ W K+G LI L+ETA + P
Sbjct: 427 KPKKPS--NKELLAELE-----------WSNPVKFKLGAMLISKLVETAKLACRREHPRT 473
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD-PLVRKGLEKTGRHMIIPYMPML 412
++ + ++PA +H +K ++G+R G I + LV+K + +I MPM+
Sbjct: 474 KEMIEQ---MQPALLHQMK-----WIRGKRQGTIAPNVELVKKLSSEPIPALIAKRMPMV 525
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET--IKMTPRSQ---LEPVFQALDTLGST 467
V P W+G+ GG+ PS ++R +Q ++ + R++ LE V++ L L S
Sbjct: 526 VRPKPWKGWEDGGYLRFPSPILRLPVGDKQGKSYFLAAAERNEGKDLETVYRGLTALSSV 585
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVD-QEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
WRV+ + V W SG +A + LP +P + D E +KW + + +
Sbjct: 586 PWRVHPGVFKVQLDAWNSGEEIANFAPLRPATDLPPEPESTDFAERRKWLAQCHEIRNKA 645
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ HS+RC +L +AR + +E Y+PHNLDFRGRAYP+ PYLNH+G+D RG+L F
Sbjct: 646 TGLHSKRCFQNFQLEIARTIVNET-IYFPHNLDFRGRAYPIPPYLNHMGADNVRGLLVFA 704
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+G LG+ GL WLK HLA + G DK S + R+ FTE HLDDI+DS PL GRRWWL
Sbjct: 705 DGKELGEKGLRWLKTHLATV--AGHDKASMQERLDFTEAHLDDIYDSVRNPLTGRRWWLE 762
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A+D +Q LA C L+ AL SP P +SH+PV
Sbjct: 763 ADDAWQTLAACFELTAALDSPDPTKFVSHLPVQ 795
>gi|452978725|gb|EME78488.1| hypothetical protein MYCFIDRAFT_205064 [Pseudocercospora fijiensis
CIRAD86]
Length = 1345
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 248/496 (50%), Gaps = 53/496 (10%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
Y PY LP +A T + +MT R+ + +EA++ S +
Sbjct: 336 VYGPYLEMLPIKKVAANT----ILFIMT-----RMANGKDRSTGVYASEAKLNSLTVTLS 386
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR-GIVKGHVDSKP- 326
K ++E L + + + K TS I++Q + ++ GI K + K
Sbjct: 387 KSI--------EAECLASVARQKASAPQNRKTNTTSHIRRQAVSALKKGIDKANTSPKTK 438
Query: 327 -------------WGQDALVKVGCRLIQLLMETAYIQPPVDQ----LGDSPPDIRPAFVH 369
W K+G L+ ++E A++ PV + + ++PAF+H
Sbjct: 439 AKKASQAMLAEVEWPLVVHAKLGAMLVSKVLECAHL--PVTRQHPRTKEMITQMQPAFLH 496
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
LK KG++ G+I +P + L E G +I MPM+V P W G++ GG+
Sbjct: 497 RLKYE-----KGKKTGIISPNPALLDKLQSEPVG-SLIAKRMPMVVEPKPWTGWSDGGYL 550
Query: 428 FLPSYVMR-THGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
+ V+R G + +E ++ L+ +++ L LG W+V++ + V W S
Sbjct: 551 HYSNPVLRLQQGDKSSKEYFMAADQNNDLDTLYKGLTALGKVPWKVHQEVFKVQLEAWNS 610
Query: 486 GGCLAGLVD-QEDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
G +A ++ +P +P++ D E +KW +++ + HS+RC +L +A
Sbjct: 611 GEAIANFAPLNPEMKMPPEPDSSADPLERRKWLAEIRALDNKKGGYHSKRCFQNFQLEIA 670
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R + +E Y+PHN+DFRGRAYP+ PYLNH+G+D RG+L F +G LG+ GL WLKIH+
Sbjct: 671 RTLLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRGLLVFADGKELGENGLRWLKIHM 729
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
A + G DK S E RV FT HLDDI+DS PL GRRWWL AED +Q LA C L+ A
Sbjct: 730 ATV--AGHDKASLEERVEFTMGHLDDIYDSVRDPLGGRRWWLQAEDAWQTLAACFELTAA 787
Query: 664 LRSPSPESTISHIPVH 679
L SP P +SH+PV
Sbjct: 788 LDSPDPTKFVSHLPVQ 803
>gi|317035455|ref|XP_001397108.2| DNA-dependent RNA polymerase family protein [Aspergillus niger CBS
513.88]
Length = 1640
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 195/365 (53%), Gaps = 25/365 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 806 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAYQINW-----GRRA 860
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 861 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRTTP 915
Query: 438 GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G Q +K + LE + Q LD LG+T W +N+ + V+ W SG +A L E
Sbjct: 916 GETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNSGEPVADLAPLE 975
Query: 497 DVPLPE-KPNTDDETEI-KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
KP+ ++ E KKW ++ + + + HSQRC ++ VAR ++E FY
Sbjct: 976 PELPHPPKPSPEEGYEAEKKWDNDMREIENRRAGFHSQRCFQNFQMEVARAYRNET-FYL 1034
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGRAYP+ PYLN +G+D RG+L F + PLG++GL WLK+ +ANL G DK
Sbjct: 1035 PHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQIANL--SGFDKA 1092
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R FT +HLDD+ DSA+ L GRRWWL A+DP+QCLA C L AL+ P P S
Sbjct: 1093 SLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRNALQHPDPTQFAS 1152
Query: 675 HIPVH 679
+PVH
Sbjct: 1153 RLPVH 1157
>gi|344304552|gb|EGW34784.1| hypothetical protein SPAPADRAFT_47865 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1287
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/596 (30%), Positives = 280/596 (46%), Gaps = 78/596 (13%)
Query: 100 EVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAK------YYMLKRRQIKIETEAW 153
E QE DQFN + LD+Q + + G+ AK Y K+R + T
Sbjct: 353 ETQEQRDQFNHALANF-----NLDRQKQMEIRGVEGAKEKWKHEYEETKKRDSIMST--- 404
Query: 154 EQAAKEYQDLLADMCE--QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYA 211
++L A + E QKL P L + L L D A +Q ++++K + YA
Sbjct: 405 -------KNLNAQLYEWYQKLVPLLQKERQECLD----LIDDKATNQKSSENK-ERAVYA 452
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
P+F + + A+ T+ +++ L T + +R + A +G+A+E + Q K K
Sbjct: 453 PFFVKIDPEKAAMTTILEVMKLQSTGGISNGMRALTALQSVGKALEYDYITQKLSKKDLK 512
Query: 270 KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK-PWG 328
+ T K + + L+ L VR +G + W
Sbjct: 513 RTQTS------------------------KHKGSRLL----LNLVRNAAEGDPNEDFGWS 544
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIE 388
QD +++G + LME A ++ + + AF H++ + + G+R G I+
Sbjct: 545 QDISIRLGAVFVSFLMEVAKVRVSRHTVETE----QSAFFHSI-----QYIGGQRIGAIK 595
Query: 389 CDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
+ K + ++ + +MPM V P +W GY G P ++R + + +
Sbjct: 596 LHSDLVKSINRSSLDSCVQPQHMPMPVKPKDWDGYYGRGQVMSP--LVRVRDSPETAAYV 653
Query: 447 KMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP-LPEKP 504
K R+ L+ V+ L+ LG+T W VNK I VI W +G + D P LP KP
Sbjct: 654 KTAARNGNLDQVYAGLNVLGNTAWTVNKDIFKVISHYWNTGKEFLDIPGVLDKPILPPKP 713
Query: 505 NTDDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
D+ IK K++ V K + S SQRCD KL +AR E+ Y+PHNLDFRGR
Sbjct: 714 ERSDDPSIKYKYRKLVTQLKSEFSTMRSQRCDANYKLEIARAFIGEK-LYFPHNLDFRGR 772
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
AYP+ P+ NHLG D+ R + F +G LG+ GL WLKI LANLY G DK ++ RV F
Sbjct: 773 AYPISPHFNHLGGDMTRSLFLFWDGKELGERGLRWLKIQLANLY--GFDKAPFDERVKFV 830
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
E++L ++F+SA P WW A+ P+Q L C +L A + P P +SH+ VH
Sbjct: 831 EDNLQNVFESAKNPYSEDAWWKKADKPWQALGVCFDLRRAYKLPDPTKYVSHMAVH 886
>gi|440472069|gb|ELQ40956.1| DNA-directed RNA polymerase [Magnaporthe oryzae Y34]
gi|440485237|gb|ELQ65213.1| DNA-directed RNA polymerase [Magnaporthe oryzae P131]
Length = 2046
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 202/360 (56%), Gaps = 15/360 (4%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W + +G L+ L++ A I + P+ R +F + + +G++Y
Sbjct: 532 WPASIRLTIGSVLLSSLVDVATIT-----VTKEHPETRETISAEQPAFARSIQYKQGKKY 586
Query: 385 GVIECD-PLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQ 442
G + + LV+ + + + + ++PM+ P W +++GG+ P++++R G + Q
Sbjct: 587 GTLAPNKSLVQLMMREPRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQ 646
Query: 443 RETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ + R +E V + LD LG W +NK +L V+ ++W SG + G+ D+
Sbjct: 647 KLYAEAAMARGDMEQVAKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKA 706
Query: 501 PEKPNTDDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
PE+P+ ++ ++ +W ++K + + HSQRC +L +A +D+ Y+PHN+D
Sbjct: 707 PEEPSPSEDPMVRFRWIRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVD 765
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGRAYP+ YLNH+G+DL R +L F++ PLG+ GL WLK+HLAN+Y G DK S R
Sbjct: 766 FRGRAYPLPIYLNHIGADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSER 823
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F +H++DI DSA PL G+RWWLGAEDP+QCLATC L A P P +PVH
Sbjct: 824 AQFALDHIEDIVDSATNPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVH 883
>gi|301106056|ref|XP_002902111.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
gi|262098731|gb|EEY56783.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
Length = 1070
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/671 (27%), Positives = 294/671 (43%), Gaps = 121/671 (18%)
Query: 78 TSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAK 137
T +A + E S E+V + ++ F + S+ + Q ++
Sbjct: 110 TEEEFADSVELAKSARSFMSDEDVDKWLESFEIPNDELAKCSTPEETQNMRRRYA----- 164
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
RQ+++E +E A +Y + + + + K L W + I +
Sbjct: 165 ------RQLRLECSVYEMAMDKYSASHDKVRQLGRSTSTNAAKDLITKWMPQAQKYIESE 218
Query: 198 QATAQDKWKHMT----YAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEA 253
Q + H T Y P L D++A I M+ ++ + + + + ++ A +G+A
Sbjct: 219 QKKIKSG-THSTDSNIYGPALMLLRHDILAAIGMNIMLNMCLMESKGPKFIKLALAMGKA 277
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
++ E + + E + K + K + K KL+
Sbjct: 278 VQEE--------------------------IISKKETISKRYQDDDKFYLQVSKNIKLES 311
Query: 314 VRGIVKGHVDS-KPWGQDALVKVGCRLIQLLMETAYIQPPVDQL---------GDSPPDI 363
++ +K +VDS W + +KVG ++ + T Y+ ++ G PP+
Sbjct: 312 LKMRMKEYVDSVGGWDKRLQLKVGAAVVDCIQRTCYVPNEYGEVSTPELCAAKGLPPPE- 370
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHM-IIP----YMPMLVPPLNW 418
PAF+H F + RR GVI+ + + T ++P Y+PMLVPP W
Sbjct: 371 -PAFIHNY-VFDR----NRRAGVIQIHQRMADTVLATNPDANVLPWTARYLPMLVPPRPW 424
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
GG+ L + +MR + Q + ++ R +++ + +AL+ + W +NK +L V
Sbjct: 425 TSVINGGYLKLRTKIMRQRDSAWQMDCVQ---RGEMDGILKALNLMAEVPWVINKEVLDV 481
Query: 479 IDRMWASGGCLAGLVDQEDVPLPE--KPNTDDE--------------------------- 509
+ ++W GG L + DVPLP+ P D+
Sbjct: 482 VLQIWEDGGNFGDLPTRTDVPLPDPDSPEFADDPALYHKNVRKNQAHMMTISTSCGFKLI 541
Query: 510 -------TEIKKW------------KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
E+ W +W + ++ N E HS RCD KL VA + KDE
Sbjct: 542 ATVSGHCLEVVGWIFLSLEPSERLLRWSL--IEQLNREFHSLRCDTLYKLQVAEEFKDEP 599
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
YYP+N+DFRGR YP+ P LNHLGSDL R +L F + PLG+ GL W+KIHLAN++ G
Sbjct: 600 ELYYPYNMDFRGRVYPIPPNLNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--G 657
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPL-EGR-RWWLGAEDPFQCLATCINLSEALRSPS 668
VDK S++ RV F + HLD + SA PL EG WW GA+ PF L C L A+ SP
Sbjct: 658 VDKCSFDERVEFADAHLDKVVASASDPLGEGDCAWWKGADYPFLALGVCFELKRAIESPD 717
Query: 669 PESTISHIPVH 679
P +S+IP+H
Sbjct: 718 PTQYMSNIPIH 728
>gi|241948027|ref|XP_002416736.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223640074|emb|CAX44320.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1300
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 191/626 (30%), Positives = 285/626 (45%), Gaps = 82/626 (13%)
Query: 91 SESELSGSEEVQELIDQFNEKGV---------SILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L S +V+++I+ +++ + + + S L ++ Y +
Sbjct: 319 SEAALEFSNQVEKIIEDMDDEALKHDIMNGQMNYFEMYSKLKTDEQRHAFNEALNVYNLD 378
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKSLFL---G 185
+++QI+I E W+ +E DL L C + L LP ++ +
Sbjct: 379 RQKQIEIRGIEGAKEKWKHDFEESHKRGDLNLSKGLNAQCYEWLQDMLPVLEKEYKQCEA 438
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRV 243
I KD A+D+ YAP+ L D ++T+ +L L T R
Sbjct: 439 LINGNNAVIEKDDPNAKDR---AMYAPFLLKLSPDKAIIVTILELFKLHATGGVISGFRA 495
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+A +G+AIE E RI L+ K++ KL R
Sbjct: 496 YKAIQSVGKAIEAEYRI---------------GLQA-------------KKENKLFSRKH 527
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
+ QKL + R + KG+ + W ++G L+ +LM A ++ + D
Sbjct: 528 LSPQLQKLMR-RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKLKVTRETPQGLIEDS 586
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGY 421
PAF H++ + + G R GVI+ + L T I P +PMLV P W Y
Sbjct: 587 HPAFFHSM-----QFIGGNRVGVIKVHTEISNILSGTSLTESIQPQALPMLVEPKPWNSY 641
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
GG + + ++R + + IK R L+ VF+ L+ LG T W VNK++ VI
Sbjct: 642 YGGGGLYSKTPLVRVRDSPETEAYIKAANERGNLKAVFEGLNVLGKTAWTVNKKVFNVIS 701
Query: 481 RMWASGGCLAGL--VDQE-----DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR 533
W SG + V +E DVP N+D E + K + + S K SQR
Sbjct: 702 HYWNSGEEFLSIPPVSEEPRLPKDVP----DNSDPEVLLNYTMSKFRALDEYMSNK-SQR 756
Query: 534 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK 593
CD +L +AR E+ Y+PHNLDFRGRAYP+ P+ NHLG DL R + F +G LG+
Sbjct: 757 CDNNYRLEIARAFIGEK-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGE 815
Query: 594 AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC 653
GL WLKI LAN+Y GVDK S RV F + +L+ +F SA PL WW AE P+Q
Sbjct: 816 EGLRWLKIQLANVY--GVDKESLTKRVEFVDANLEKVFASAADPLASNAWWQKAEKPWQA 873
Query: 654 LATCINLSEALRSPSPESTISHIPVH 679
L+ C L+EA + P +SH+PVH
Sbjct: 874 LSVCFELAEAYKLDDPTKFVSHLPVH 899
>gi|121716567|ref|XP_001275845.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
gi|119404002|gb|EAW14419.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
Length = 1375
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 280/592 (47%), Gaps = 70/592 (11%)
Query: 117 DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIET-----EAWEQAAKEYQDLLADMCE-- 169
+SSS + P++K A Y L++RQ++ ++ + W Q + Q + D+
Sbjct: 333 ESSSAIPTDPEQK------AVYDELRQRQLESDSIRSAMDRWRQEFDDRQKMGLDVTAGG 386
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT---AQDKWKHMTYAPYFNNLPADMMAVIT 226
+KL + S + + D +A+ +A +D+ Y Y +L D +A +T
Sbjct: 387 KKLGSVMNQWHSSLVARIKEELDLVAEAEANPIRTRDQKGRCEYGVYLRSLDTDTLAALT 446
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
+ ++ E ++V IG+ +++E ++ K K+ A + E L
Sbjct: 447 ILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK--KQAGADARRAKALKEML 504
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
+ Q+ + R +++ K + Q+ IV W + KVG L+ LL
Sbjct: 505 AQ------RRQKDGRTRWQAMVYKMQ-QEDSTIV--------WPPRVIAKVGAVLMSLLF 549
Query: 345 ETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE 398
E + PV + P + ++PAF H + GRR G + P + K +
Sbjct: 550 EVG--KAPVTM--EDPENKKKMVTMQPAFQHAY-----QITWGRRTGYLHLHPAIVKIIA 600
Query: 399 KT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMTPR 451
K GRH+ PM+ P W+G GG S ++RT G Q IK
Sbjct: 601 KEPTADLLGRHL-----PMVCKPRPWKGSKDGGFLLYQSDLVRTTPGESLQPTYIKTALE 655
Query: 452 SQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-- 508
+ LE + + LD LGST W VN+ +L V+ W SG A + E +
Sbjct: 656 NNGLEEIRRGLDNLGSTGWVVNRDVLNVMLEAWNSGEATANIAPLEPDLPLPPKPAPEAG 715
Query: 509 -ETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 567
E E K+W V+ + + S HS RC ++ +AR ++ FY PHN+DFRGRAYP+
Sbjct: 716 YEAE-KEWDVLVRDIENRRSGLHSMRCFQNFQMELARAYRNST-FYLPHNMDFRGRAYPL 773
Query: 568 HPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHL 627
PYLN +G+D RG+L F E PLG +GL WLKI +ANL G DK S R F +HL
Sbjct: 774 PPYLNQMGADNSRGLLLFSEAKPLGASGLKWLKIQIANL--SGFDKASLSEREQFAMDHL 831
Query: 628 DDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DD+ DSAD+ L G+RWWL AEDP+QCLA C L ALR P P S +P+H
Sbjct: 832 DDVLDSADKGLHGKRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
>gi|169621404|ref|XP_001804112.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
gi|111057416|gb|EAT78536.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
Length = 1542
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 181/343 (52%), Gaps = 14/343 (4%)
Query: 344 METAYIQPPVDQL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG 401
M+TA I + L G + AF H L E ++G++ G + P + L K
Sbjct: 582 MQTATITFTANDLKSGKQLTSTQAAFHHGL-----EYVQGKKIGYLSPHPELVGKLRKDS 636
Query: 402 RHMIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA--RQQRETIKMTPRSQLEPVF 458
I P +PM+V P W + GG++ P V+R Q+ + V
Sbjct: 637 VANIQPVNLPMIVEPKPWTSFQDGGYYTQPQRVVRQKAGDPAQRAYAESAIENGDMAKVL 696
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED--VPLPEKPNTDDETEIKKWK 516
LD LG W++N IL V+ + W G +AGL+ + P E P E KW
Sbjct: 697 AGLDVLGKVPWQINAPILEVMLQAWNKGEGIAGLIPENHGLEPPVEPPADAPRVERAKWA 756
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
K++ + S HSQRC +L +AR E+ Y+PH++DFRGRAYP+ P LNH+G+
Sbjct: 757 KKLQEHENLKSGLHSQRCFQNFQLEIARAFAAEKKIYFPHSVDFRGRAYPLSPVLNHIGA 816
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL RG+L+F G LG GLHWLKIHLANLY G DK S + R F ++L DI+DSA
Sbjct: 817 DLARGLLKFANGKELGTVGLHWLKIHLANLY--GYDKASLKEREQFAMDNLSDIYDSATN 874
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL+GRRWWL AEDP+QCLA C+ L A S P S PVH
Sbjct: 875 PLDGRRWWLNAEDPWQCLACCMELKNAFDSADPTRYKSQFPVH 917
>gi|358396537|gb|EHK45918.1| hypothetical protein TRIATDRAFT_292168 [Trichoderma atroviride IMI
206040]
Length = 1435
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 19/363 (5%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI---RPAFVHTLKSFTKEALKGR 382
PW +VG L+Q+L+E+A I V + S I +PAF H ++ + KG+
Sbjct: 588 PWTLQIKAQVGSILLQMLIESAKINV-VAESSTSKELISQYQPAFSH--QTLLR---KGK 641
Query: 383 RYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA-- 439
+ G + + L+ + + I ++PM+V P W + GG + +R
Sbjct: 642 KVGALFFNNHLIEQLKREPVGDFIAKHLPMVVEPKPWSSFTEGGFLDCKTSFVRVKPGDI 701
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG---LVDQE 496
Q+ + R +E VF+ LD LG T W +NK L V+ W SG +A L +
Sbjct: 702 EQKLYSTAAIKRGDMEQVFKGLDVLGKTAWVINKDTLNVMMEAWNSGEEIANIPPLHPKF 761
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
DVP PE ++ D K W VK + + S HSQRC + L+L +AR +++ Y+PH
Sbjct: 762 DVP-PEPDSSADPLARKSWIRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFPH 819
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+D+RGRAYPM YLNH+G+D R +L+F +G LG GL WLKIHLAN+Y G+DK S+
Sbjct: 820 NVDYRGRAYPMPTYLNHMGADHARSILKFAKGKELGVRGLRWLKIHLANVY--GLDKASF 877
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R AF +++ +I DSA PL+G RWWL EDP+QCL+ C L AL P P +S++
Sbjct: 878 DEREAFANDNVANIIDSATNPLKGSRWWLKGEDPWQCLSACFELKAALELPDPTKFVSNL 937
Query: 677 PVH 679
PVH
Sbjct: 938 PVH 940
>gi|330914797|ref|XP_003296788.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
gi|311330907|gb|EFQ95107.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
Length = 1430
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 174/568 (30%), Positives = 263/568 (46%), Gaps = 60/568 (10%)
Query: 144 RQIKIETEAWEQAAKEYQ---DLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD--- 197
RQ+++E + + A K ++ + L D+ + P ++++ W++ L A K
Sbjct: 368 RQLQMEQDGMDAAVKRWKQENEKLQDLGVHGVMNTKP-IQAMMYSWYKALVPAFKKRIEH 426
Query: 198 -----QATAQDKWKH--MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE----VRVVQA 246
+A+D K +Y + + +A IT+ + + N GE ++V
Sbjct: 427 AKKVLSESAKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSSL 486
Query: 247 ACQIGEAI------ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK 300
+ IG I E++AR +F K +K+ D + P + E +E
Sbjct: 487 STSIGGEIQDYLDSESQARRDAFLKKQRKQTRLDLFSKLSKNPSVSQTESGQRES----- 541
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGD 358
+ SL +K + P A K+G ++ L+ A + + G+
Sbjct: 542 -IASLDSFEKT------------TIPL--QARTKLGAMCLENLLSCATLTVTAKDPRTGE 586
Query: 359 SPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-MPMLVPPLN 417
AF H + +G++ G I V L H I +PM++ P
Sbjct: 587 EKSRSMAAFHHQVGFH-----QGKKLGFIVPHHEVLAKLRTESVHSIHNVRLPMVIEPKP 641
Query: 418 WRGYNRGGHFFLPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
W + GG++ +P V+R G + Q+ + V LD LG W++N +
Sbjct: 642 WSSFEDGGYYTIPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPV 701
Query: 476 LGVIDRMWASGGCLAGLVDQEDVPLPEKPNT--DDET--EIKKWKWKVKTAKKQNSEKHS 531
V+ R W +G L L+ ++ V E+P D T E KW +K HS
Sbjct: 702 FDVMARAWNAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNHIGGLHS 761
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRC +L AR +E+ Y+PH++DFRGRAYP+ P LNH+GSD+ RG+L+F G L
Sbjct: 762 QRCFQNFQLETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKEL 821
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G GL WLKIHLANLY G DK S R F ++LD+I DSA PL+GRRWW AEDP+
Sbjct: 822 GTVGLQWLKIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPW 879
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
QCLA CI L AL SP P +S +PVH
Sbjct: 880 QCLACCIELKSALDSPDPTRFLSQLPVH 907
>gi|358383250|gb|EHK20918.1| hypothetical protein TRIVIDRAFT_171102 [Trichoderma virens Gv29-8]
Length = 1317
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 31/370 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI----RPAFVHTLKSFTKEALK 380
+PW +VG L+Q+L+E+A + V G + ++ +PAF H ++ + K
Sbjct: 467 EPWSIQIKAQVGSILLQMLIESAKVN--VVAEGSTSKELISQYQPAFNH--QTLLR---K 519
Query: 381 GRRYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-- 437
G++ G + + LV + + I ++PM+V P W ++ GG + ++R
Sbjct: 520 GKKVGALFFNTHLVEQLKREPMGDFIAKHLPMVVEPKPWTSFSEGGFLDSKTSLVRVKPG 579
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
Q+ + R + VF+ LD LG T W +NK L V+ W SG +A D
Sbjct: 580 DVEQKLYSNAAIKRGDMTQVFKGLDILGKTAWIINKDTLNVMMEAWNSGEEIA------D 633
Query: 498 VP-------LPEKPNTDDETEIKK-WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
+P P +P++ + ++K W VK + + S HSQRC + L+L +AR +++
Sbjct: 634 IPPLNPKLEAPTEPDSSADPLVRKNWIRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQ 693
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
Y+PHN+D+RGRAYPM YLNH+G+D R +L+F +G LG GL WLKIHLAN+Y
Sbjct: 694 T-IYFPHNVDYRGRAYPMPTYLNHMGADHARAILKFAKGKELGVRGLRWLKIHLANVY-- 750
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
G+DK S++ R AF++ ++ +I DSA PL G RWWL EDP+QCL+ C L AL P P
Sbjct: 751 GLDKASFDEREAFSDENVANIIDSATNPLGGSRWWLKGEDPWQCLSACFELKAALELPDP 810
Query: 670 ESTISHIPVH 679
ISH+PVH
Sbjct: 811 TKFISHLPVH 820
>gi|353240452|emb|CCA72321.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 1283
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 159/475 (33%), Positives = 238/475 (50%), Gaps = 50/475 (10%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKK 270
+ LP + + +I M +L+ +L + E R + IG AIE E F+ KK
Sbjct: 379 FLRLLPPEKLTLICMLELLNMLASGGYEDGARTTRVLLSIGAAIEAE----HHFQMAKKH 434
Query: 271 NATDNNLEGDSE-PLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD-SKPWG 328
+ + + SE P + L +E++K R+ ++G + PW
Sbjct: 435 DIPVPDFKSKSELPTYSVAGYLELHKERVKARLE--------------LEGRENWMPPWT 480
Query: 329 QDALVKVGCRLIQLLMETA-YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
Q+ +VG + LME A IQ V + D + + + + G + GVI
Sbjct: 481 QEVRARVGAFVADALMEQAKVIQTKV--INDVVHEEEQQAFYNAYRYER----GFKIGVI 534
Query: 388 ECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
+ + ++ L E + ++PM+V P W +N GG+ + VMR + +Q
Sbjct: 535 KMNDMIIDKLSREPPRERLHARHLPMVVRPRPWLRHNAGGYLYSNLSVMRMKESNEQTSY 594
Query: 446 IK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP 504
++ R +E V+ LD LG T W+ L L + + +P
Sbjct: 595 LREADSRGAMELVYAGLDVLGKTAWKATLAFLL--------------LTSNKRIQIPPLD 640
Query: 505 NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRA 564
+TD + + +K + + HS RC K+ +AR E+ FY PHN+DFRGRA
Sbjct: 641 HTDMRAK-ADYAVAMKKLALEQAANHSDRCSTNYKMEIARTFLGEK-FYLPHNVDFRGRA 698
Query: 565 YPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTE 624
YP+ P+LNHLG DL RG+L F EG PLGK G+ WLKIHLANLY G DK +++ R F+
Sbjct: 699 YPIPPHLNHLGDDLSRGLLLFAEGKPLGKRGIRWLKIHLANLY--GYDKATFDDRETFST 756
Query: 625 NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
HL++I+DSA+ PL GR+WWL A+DP+QCLATC+ L AL SP+PE S +PVH
Sbjct: 757 EHLEEIYDSAENPLTGRQWWLKADDPWQCLATCMELRNALESPNPEMYESCLPVH 811
>gi|307103643|gb|EFN51901.1| hypothetical protein CHLNCDRAFT_27382 [Chlorella variabilis]
Length = 599
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 172/289 (59%), Gaps = 17/289 (5%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-------QLEPVFQA 460
Y+PML+PP+ W N GGH L + VMR G+R Q+E + + L V+ A
Sbjct: 9 YLPMLIPPVPWLRNNLGGHLTLRNTVMRIRGSRLQQEMLDAADQEWGEGRGPGLSRVYDA 68
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE--KPNTDDETE------- 511
L++LGST W +N+ + V++ +WA GG + + + ++PLP KP
Sbjct: 69 LNSLGSTAWAINQDVFRVVETVWAWGGGVCDIPPKVNLPLPRDLKPGFRQHRHAPGQLQF 128
Query: 512 -IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ + + +K+N E HS RCD+E KL++AR+ E FY+PHN+DFRGRAYPMHP+
Sbjct: 129 YLRTRRADISRMQKKNRELHSLRCDMEYKLAIAREFVKEPRFYFPHNVDFRGRAYPMHPH 188
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNHLG+DL RG+L+F EG PLG+ GL WL + ANL+ GVDKL GRV + E+HL I
Sbjct: 189 LNHLGADLSRGLLQFAEGRPLGEHGLFWLYVQAANLWGQGVDKLPLWGRVKWVEDHLAQI 248
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+ +W AE+PFQ L+TC + +A S P +SH+PVH
Sbjct: 249 LMTTRGSHGQVAYWWQAENPFQFLSTCFEIHKANASGDPARFVSHVPVH 297
>gi|119481989|ref|XP_001261023.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
gi|119409177|gb|EAW19126.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
Length = 1376
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 228/484 (47%), Gaps = 44/484 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+QQ + W
Sbjct: 488 -------NETGADSRRLKALKE-LLAGRKKKDGRAKWHALVQKMQQEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
KVG L+ LL E ++ + ++PAF H + GRR G
Sbjct: 533 SPRVTAKVGAVLMSLLFEVGKAPVTIEDPETKKKTVTMQPAFQHAY-----QITWGRRTG 587
Query: 386 VIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-G 438
+ P + + + K GRH+ PM+ P W+G GG S ++RT G
Sbjct: 588 YLHLHPAIVQIIAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRTTPG 642
Query: 439 ARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
Q IK + LE + + LD LGST W +N+ +L V+ W SG +A L E
Sbjct: 643 ESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINRDVLNVMLEAWNSGEAVANLAPLEP 702
Query: 498 VPLPEKPNTDDET--EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+ K+W V+ + + S HS RC ++ +AR ++ FY P
Sbjct: 703 DLPLPPKPAPEAGYHAEKEWDTLVREVENRRSGLHSMRCFQNFQMELARAYRNVT-FYLP 761
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGRAYP+ PYLN +G+D RG+L F E PLG +GL WLKI +ANL G DK S
Sbjct: 762 HNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKAS 819
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R FT +HLDD+ DSAD+ L GRRWWL AEDP+QCLA C L ALR P P S
Sbjct: 820 MSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSR 879
Query: 676 IPVH 679
+P+H
Sbjct: 880 LPIH 883
>gi|115388207|ref|XP_001211609.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
gi|114195693|gb|EAU37393.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
Length = 1382
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 214/416 (51%), Gaps = 40/416 (9%)
Query: 289 EKLIKEQEKLKKRVTSLIK------KQKLQQVR--GIVKGHVDSKP---WGQDALVKVGC 337
EK +++Q R +K KQK + R IV+ P W K+G
Sbjct: 483 EKTLQKQSGADARRVKAVKEMLAGRKQKDGRARWQNIVRSLEQEDPTVVWPPRVKAKIGA 542
Query: 338 RLIQLLMETAYIQPPV----DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
L+ LL E + PV Q ++PAF H+ + GR+ G I P +
Sbjct: 543 VLMSLLFEVG--KAPVAMQHSQSKKQEVTMQPAFQHSY-----QISWGRKGGYIHLHPEI 595
Query: 394 RKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETI 446
K + K GRH+ PM+ P W G GG+F + ++R T G Q +
Sbjct: 596 VKIITKEPTADLLGRHL-----PMICKPKPWGGMKDGGYFLYQNNIVRSTPGETLQPSYM 650
Query: 447 KMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKP 504
K ++ L+ + + LD LGST W +N+ + V+ W G +A L E D+P P +P
Sbjct: 651 KAALQNDGLKQIREGLDILGSTGWTINRDVFDVMLEAWNLGEPIANLSPLEPDLPHPPRP 710
Query: 505 NTDDETEI-KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
++ E KKW ++ + + + HS RC ++ VAR ++E FY PHN+DFRGR
Sbjct: 711 APEEGYEAEKKWDNAMRDIENRRAGMHSNRCFQNFQMEVARAYRNET-FYLPHNMDFRGR 769
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
AYP+ PYLN +G+D RG+L F E PLG GL WLKI +ANL G DK S R F
Sbjct: 770 AYPLPPYLNQMGADNARGLLLFSEAKPLGTTGLKWLKIQIANL--AGFDKASLSEREKFA 827
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
++HLDDI DSA++ L GRRWWL AEDP+QCLA C L AL+ +P S +P+H
Sbjct: 828 DDHLDDILDSANKGLHGRRWWLNAEDPWQCLAACCELRNALQYQNPAEYPSRLPIH 883
>gi|301620987|ref|XP_002939816.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Xenopus
(Silurana) tropicalis]
Length = 1242
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 203/367 (55%), Gaps = 28/367 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-SPPDIRPAFVHTLKSFTKEALKGRRYG 385
W LV++G L+ L+++ I+ P D L P + P H + SF ++ G
Sbjct: 575 WPNSLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYH-MYSFRS----TKQIG 627
Query: 386 VIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQ 441
+I+ P+ + G + MPML PP+ W G + P+ +MR GA Q
Sbjct: 628 LIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQ 687
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP-- 499
+ ++ +P QL PV +L+ LG WR+N+ IL +I ++ G ++ D+P
Sbjct: 688 HQLLLEKSPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKG-----NEKLDIPPP 742
Query: 500 ------LPEKPNTDDETEIKKWKWK-VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
LPE+P+ D + K + + +K++SE HS R D KLS+A ++D+ F
Sbjct: 743 LSEAPKLPEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK-IF 801
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
++PHN+DFRGR YP PY NHLGSD+ R +L F EG PLG GL WLK HL NL G
Sbjct: 802 WFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINL-TGLKK 860
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
+ S + R + ++ +DDI DSAD PL+G+RWW+ A++P+Q LA C+ ++ A RSP P
Sbjct: 861 RNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIANASRSPDPTKY 920
Query: 673 ISHIPVH 679
ISH PVH
Sbjct: 921 ISHFPVH 927
>gi|384250319|gb|EIE23799.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 591
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 173/295 (58%), Gaps = 26/295 (8%)
Query: 411 MLVPPLNWRGYNRGGHFFLPSYVMRTH----GARQQRETIKMTPRSQLEPVFQALDTLGS 466
ML+PPL WR ++ GGH + +MR H G + ET + L V+ AL+ +G
Sbjct: 1 MLIPPLPWRSHDSGGHLIMRGSIMRVHTYPKGVSRAIETAQERTPYGLSRVYDALNAVGE 60
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGL----VDQEDVPLPEKPN--------------TDD 508
W +NK +L V++R WA+ + GL VDQ+ P T
Sbjct: 61 VPWAINKPMLAVVERAWAAQLPICGLPVKYVDQKPQPKSTAKRFRTHHHRHQLQLLLTSQ 120
Query: 509 ETEIKKWKWKVKTAK---KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
ET ++ K ++K + K+ E HS RCD+ LKL VA + KDE FY+PHNLDFRGRAY
Sbjct: 121 ETGAERTK-RMKGNRLLNKRIRETHSLRCDLNLKLGVANEFKDELRFYFPHNLDFRGRAY 179
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+HP+LNH+G D+CRG+L F E PLG G+ WL + +AN + +DK+ +EGR F +
Sbjct: 180 PLHPHLNHMGPDVCRGLLTFAEARPLGPDGIGWLYVLIANSWGKSIDKMDFEGRRQFAQR 239
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
+L+ + DSA+RPL+G RWW E P+Q LA C+ + +AL S +P + +S +PV +
Sbjct: 240 NLEAVLDSAERPLDGHRWWTKGEKPWQLLAACMEVRDALASGNPAAYLSRLPVQI 294
>gi|148235669|ref|NP_001080987.1| polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
gi|6625742|gb|AAF19376.1|AF200705_1 RNA polymerase [Xenopus laevis]
gi|213626594|gb|AAI69686.1| Polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
Length = 1235
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 208/368 (56%), Gaps = 30/368 (8%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-SPPDIRPAFVHTLKSFTKEALKGRRYG 385
W LV++G L+ L+++ I+ P D L P + P H + SF ++ G
Sbjct: 568 WPNTLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYH-MYSFRS----TKQIG 620
Query: 386 VIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
+I+ P+ + ++ R + + MPML PP+ W G + P+ +MR GA
Sbjct: 621 LIKPHPIFSQ-IQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGAV 679
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP- 499
Q + ++ +P QL PV +L+ LG WR+N+ IL +I ++ G ++ D+P
Sbjct: 680 QHQLLLEKSPPGQLYPVLDSLNQLGMCAWRINQTILDIIVSIFNLKGN-----EKLDIPP 734
Query: 500 -------LPEKPNTDDETEIKKWKWK-VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
+PE+P+ D ++ K + + +K++SE HS R D KLS+A ++D+
Sbjct: 735 PISEAPKMPEQPHGDVNSKDKLMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK-I 793
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
F++PHN+DFRGR YP PY NHLGSD+ R +L F EG PLG GL WLKIHL NL G
Sbjct: 794 FWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKIHLINL-TGLK 852
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+ S + R + + +DDI DSAD PL+G+RWW+ A++P+Q LA C+ +++A RSP P
Sbjct: 853 KRNSLKERKEYADAIMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAKASRSPDPTK 912
Query: 672 TISHIPVH 679
ISH PVH
Sbjct: 913 YISHFPVH 920
>gi|46121275|ref|XP_385192.1| hypothetical protein FG05016.1 [Gibberella zeae PH-1]
Length = 1357
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 193/364 (53%), Gaps = 24/364 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W +VG L++ L+ETA + + P+ + + I+PAF H KG+
Sbjct: 511 WSVQVRARVGSILVKSLIETAKVKVVREHPISK--ERISQIQPAFSHM-----HAPRKGK 563
Query: 383 RYGV--IECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ G+ I D + R E G + ++PM+ P WR N GG FL S ++T
Sbjct: 564 KVGMLFINADLVERLKREPMG-DFLAKHLPMVSEPQPWRRINEGG--FLSSKATLVRLKT 620
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-VDQ 495
Q+ T R ++ VF+ LD LG T WR+N +L V+ W SG +A +
Sbjct: 621 GDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNSGDAIANMPTLT 680
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
++ P +P D + W VK + + + HSQRC + L+L +AR + ++ Y+P
Sbjct: 681 PNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIARAFR-KQVIYFP 739
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+D+RGRAYP+ YLNH+G+D R +L F G LG+ GL WLKIHLANLY G DK S
Sbjct: 740 HNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLANLY--GYDKAS 797
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R AF +L +I +S PL G RWWL AEDP+QCLA C L A P +S
Sbjct: 798 FTEREAFATENLPNIVESVTNPLGGSRWWLKAEDPWQCLAACFELKAAHDLEDPTKYVSS 857
Query: 676 IPVH 679
+PVH
Sbjct: 858 LPVH 861
>gi|219127813|ref|XP_002184122.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217404353|gb|EEC44300.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 576
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 168/271 (61%), Gaps = 8/271 (2%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PM+VPP W + GG+ L + ++R HG Q+E ++ L VF L+ LG W
Sbjct: 19 PMIVPPKPWSRPDEGGYKMLRTELLRYHGCNMQKEVLQ---NVDLSIVFDGLNALGRVPW 75
Query: 470 RVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK 529
R+N+R+L V R W + L + ++D PLPE+P E W+ +T ++ +
Sbjct: 76 RINQRVLTVAQRCWDNNIPLGDIPSKDDNPLPEEPLHPKRQE---QFWEPETPGYESYDL 132
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
S RC LKL A K K+ E ++P+N+DFRGRAYP+ P+L+++GSDLCRGVL+F E
Sbjct: 133 RSLRCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAK 192
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
PLG GL+WLK+HLAN G DK+S++ RV F +++L+ + SA+ P G RWW+ ED
Sbjct: 193 PLGPRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLED 250
Query: 650 PFQCLATCINLSEALRSPSPESTISHIPVHM 680
PFQ LATC+ + +A+ +PES + +PVHM
Sbjct: 251 PFQGLATCLEIIDAIDCGNPESFLCSLPVHM 281
>gi|408395694|gb|EKJ74870.1| hypothetical protein FPSE_04906 [Fusarium pseudograminearum CS3096]
Length = 1353
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 193/364 (53%), Gaps = 24/364 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W +VG LI+ L+ETA + + P+ + + ++PAF H KG+
Sbjct: 511 WSVQVRARVGSILIKSLIETAKVKVVREHPISK--ERISQVQPAFSHM-----HAPRKGK 563
Query: 383 RYGV--IECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ G+ I D + R E G + ++PM+ P WR N GG FL S ++T
Sbjct: 564 KVGMLFINADLVERLKREPMG-DFLAKHLPMVSEPQPWRRINEGG--FLSSKATLVRLKT 620
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-VDQ 495
Q+ T R ++ VF+ LD LG T WR+N +L V+ W SG +A +
Sbjct: 621 GDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNSGDAIANMPTLT 680
Query: 496 EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
++ P +P D + W VK + + + HSQRC + L+L +AR + ++ Y+P
Sbjct: 681 PNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIARAFR-KQVIYFP 739
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+D+RGRAYP+ YLNH+G+D R +L F G LG+ GL WLKIHLANLY G DK S
Sbjct: 740 HNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLANLY--GYDKAS 797
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R AF +L +I +S PL G RWWL AEDP+QCLA C L A P +S
Sbjct: 798 FSEREAFATENLPNIVESVANPLGGSRWWLKAEDPWQCLAACFELKAAHDLEDPTKYVSS 857
Query: 676 IPVH 679
+PVH
Sbjct: 858 LPVH 861
>gi|432853790|ref|XP_004067873.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Oryzias
latipes]
Length = 1366
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 170/283 (60%), Gaps = 21/283 (7%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGST 467
MPML PP+ W G + P+ +MRT GA Q + ++ + LEPVF +L+ LG+
Sbjct: 778 MPMLCPPVPWTSVKFGAYVLTPTKLMRTVEGATQHEQLLEKS--QHLEPVFDSLNQLGNC 835
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP--EKP-----NTDD----ETEIKKWK 516
W++NK +L +I ++ G D+ D+P P E P N D ++ K
Sbjct: 836 AWKINKPLLDIIISIFNDRGS-----DKLDIPPPMSEAPKIPHFNPQDPAYTASQKALMK 890
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+V AKK+ SE HS R D KLS+A M+ EE F++PHN+DFRGR YP PY NHLGS
Sbjct: 891 REVINAKKKGSEMHSLRMDALYKLSIAHHMR-EETFWFPHNMDFRGRTYPCPPYFNHLGS 949
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
D+ R +L F EG PLG GL WLKIHL NL G + S +GR+ + + ++DI DSAD
Sbjct: 950 DVTRAMLVFAEGKPLGPKGLDWLKIHLVNL-TGLKKRSSLQGRLQYANSIMEDILDSADN 1008
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL GR+WW+ A++P+Q LA C+ ++ A RSP P +SH PVH
Sbjct: 1009 PLHGRKWWMNADEPWQALACCMEIARAARSPDPAKFVSHFPVH 1051
>gi|354543834|emb|CCE40556.1| hypothetical protein CPAR2_105920 [Candida parapsilosis]
Length = 1292
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 241/523 (46%), Gaps = 58/523 (11%)
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKL P + L + + D TA+++ YAP+ + + AVIT+ +
Sbjct: 413 QKLIPLIKKEHELCKALLREEKVNVQDDTTTAKER---AFYAPFLIKVDVEKAAVITILE 469
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+ L G +R +A +G AIE E R S + + K + + G S
Sbjct: 470 LLKLNANRGSLGGMRAAKAVGSVGRAIELEYRT-SNLAAQEYKMSISRKVVGSS------ 522
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS-----KPWGQDALVKVGCRLIQL 342
Q++ IV+ +DS W ++G L+
Sbjct: 523 -------------------------QMKRIVRKSIDSLDETDPQWDHATRSRIGGVLVSF 557
Query: 343 LMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG- 401
LM A ++ D PAF H++ + + G+R GVI+ + K L T
Sbjct: 558 LMAIAKVKVVRQSPNGVIQDYHPAFFHSM-----QFVNGQRIGVIKVHNEISKNLSGTSF 612
Query: 402 RHMIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQ 459
I P +P+LV P W + G + ++R A + ++ R L+ VF
Sbjct: 613 MESIQPQSLPLLVKPKPWESFYGGVGLYSKKALVRMKDAPETEAYVRAAAKRGNLKEVFD 672
Query: 460 ALDTLGSTKWRVNKRILGVIDRMWASGG---CLAGLVDQEDVPLPEKPNTDDETEIKKWK 516
L+ LG+T W +NK++ +I W G + +++ P P+ D T + K
Sbjct: 673 GLNVLGTTAWTINKKVFDIISHYWNKGEEFLSIPPVLETAQFPAKLSPDADPSTRFEHAK 732
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
K + +S + SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ P+LNHLG
Sbjct: 733 ATTKAVRDFSSSR-SQRCDYNYKLEIARGFIGEK-LYFPHNLDFRGRAYPISPHLNHLGG 790
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL R + F EG LG+ GL WLK+ LAN+Y GVDK R+ F +HL + SA+
Sbjct: 791 DLTRSLFLFWEGTKLGERGLEWLKVQLANVY--GVDKAPISERIQFATDHLQEAIKSAED 848
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL +WW AE P+Q L+ C L+EA + P P +S++PVH
Sbjct: 849 PL-NHKWWTKAEKPWQALSVCFELAEAYKLPDPTEFVSYLPVH 890
>gi|359322171|ref|XP_542220.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Canis lupus
familiaris]
Length = 1210
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 197/369 (53%), Gaps = 27/369 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G RL +LL+ET I P + P H + +SF R
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVYSFRSF-------R 603
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
Q + + P ++L AL LG+ WRVN R+L ++ ++A+ GC L
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 497 DVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ P LP + + E+++ ++ K E HS R D +LS+A+ ++
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRR---ELARCLKVAREMHSLRSDALYRLSLAQHLR-HR 779
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL G
Sbjct: 780 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-TGL 838
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
+ R+ F + +DDI DSADRP+ GR+WW+ ++P+Q LA C+ ++ A+RSP P
Sbjct: 839 KKHEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPT 898
Query: 671 STISHIPVH 679
+ +SH PVH
Sbjct: 899 AFVSHFPVH 907
>gi|334326802|ref|XP_001375862.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Monodelphis domestica]
Length = 1196
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 200/369 (54%), Gaps = 27/369 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
K W LV++G +LI++L+++ Y+ + SP F+ L L ++
Sbjct: 526 KVWPDVLLVRLGTQLIEILVQSIYMPNSL-----SPSQATKRFIPVL-YHVYSFLSIKQI 579
Query: 385 GVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G I+ P + +++ + + MPML PP+ W N G + P+ +MR G
Sbjct: 580 GFIKPHPSFIQLVDEAAYTTLTFDVSVMPMLCPPIPWTSPNFGAYVLHPTKLMRCLDGTV 639
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL 500
Q ++ ++ P+ QL V AL LG+ W+VN+ +L ++ ++ + G + DVP
Sbjct: 640 QHQQLLESCPQGQLNAVLDALTQLGNCAWKVNQPVLDLVISIFNAKGN-----KKLDVPP 694
Query: 501 P----------EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
P E +E K + ++ K E +S R D KLS+A ++D+
Sbjct: 695 PVSEAPTPPSYELSKGASSSEKAKLRREIAQCHKTAREMYSLRMDALYKLSIAHHLRDQ- 753
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F++PHN+DFRGRAYP P+ NHLGSD+ R +L F EG PLG GL WLKIHL NL G
Sbjct: 754 IFWFPHNMDFRGRAYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLINL-TGL 812
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
K S + R+A+ L+DI DSAD PL GR+WW+ ++P+Q LA C+ ++ A+RSP P
Sbjct: 813 KKKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIANAIRSPDPT 872
Query: 671 STISHIPVH 679
+ ISH P+H
Sbjct: 873 AYISHFPIH 881
>gi|71002430|ref|XP_755896.1| mitochondrial DNA-directed RNA polymerase [Aspergillus fumigatus
Af293]
gi|66853534|gb|EAL93858.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus Af293]
Length = 1375
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 229/486 (47%), Gaps = 48/486 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+Q+ + W
Sbjct: 488 -------NEAGTDSRRLKALKE-LLAGRKKKGGRAKWHALVQKMQKEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L+ LL E + PV + ++PAF H + GRR
Sbjct: 533 SPRVTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAY-----QITWGRR 585
Query: 384 YGVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + P + + + K GRH+ PM+ P W+G GG S ++RT
Sbjct: 586 TGYLHLHPAIVQIVAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRTT 640
Query: 438 -GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
G Q IK + LE + + LD LGST W +N+ +L V+ W SG +A L
Sbjct: 641 PGESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPL 700
Query: 496 EDVPLPEKPNTDDET--EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
E + K+W V+ + + S HS RC ++ +AR ++ FY
Sbjct: 701 EPDLPLPPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FY 759
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGRAYP+ PYLN +G+D RG+L F E PLG +GL WLKI +ANL G DK
Sbjct: 760 LPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDK 817
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R FT +HLDD+ DSAD+ L GRRWWL AEDP+QCLA C L ALR P P
Sbjct: 818 ASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYP 877
Query: 674 SHIPVH 679
S +P+H
Sbjct: 878 SRLPIH 883
>gi|159129951|gb|EDP55065.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus A1163]
Length = 1376
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 229/486 (47%), Gaps = 48/486 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+Q+ + W
Sbjct: 488 -------NEAGTDSRRLKALKE-LLAGRKKKGGRAKWHALVQKMQKEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L+ LL E + PV + ++PAF H + GRR
Sbjct: 533 SPRVTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAY-----QITWGRR 585
Query: 384 YGVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + P + + + K GRH+ PM+ P W+G GG S ++RT
Sbjct: 586 TGYLHLHPAIVQIVAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRTT 640
Query: 438 -GARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
G Q IK + LE + + LD LGST W +N+ +L V+ W SG +A L
Sbjct: 641 PGESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPL 700
Query: 496 EDVPLPEKPNTDDET--EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
E + K+W V+ + + S HS RC ++ +AR ++ FY
Sbjct: 701 EPDLPLPPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FY 759
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGRAYP+ PYLN +G+D RG+L F E PLG +GL WLKI +ANL G DK
Sbjct: 760 LPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDK 817
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R FT +HLDD+ DSAD+ L GRRWWL AEDP+QCLA C L ALR P P
Sbjct: 818 ASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYP 877
Query: 674 SHIPVH 679
S +P+H
Sbjct: 878 SRLPIH 883
>gi|432101125|gb|ELK29409.1| DNA-directed RNA polymerase, mitochondrial [Myotis davidii]
Length = 1219
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 212/369 (57%), Gaps = 27/369 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW +V++G +L ++L++T + + Q D+ I + V++ +SF R+
Sbjct: 554 QPWPLTVVVQLGKQLAEVLVQTVKMPSNLAQQQDTQKLIPVLYHVYSFQSF-------RQ 606
Query: 384 YGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G+++ P + L++T + + +PML PPL W + G P+ +MR+ G
Sbjct: 607 IGILKPHPAFIQ-LQETAAERTMTFESAEVPMLCPPLPWTSPHSGAFLLSPTKLMRSLEG 665
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
Q + ++ P ++L AL LG+ WRVN R+L ++ ++ + GC L
Sbjct: 666 TIQHQRLLEGCPPTELHGALDALTQLGNCAWRVNGRVLDLVLTIFNAKGCPRLGVPSPAS 725
Query: 497 DVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ P LP + + +TE+++ ++ K E HS R D +LS+A+ ++
Sbjct: 726 EAPRPSKHRLPANASPERKTELRR---ELARCLKVAREMHSLRTDALYRLSLAQHLR-HR 781
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL+WLKIHL NL G
Sbjct: 782 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLNWLKIHLVNL-TGL 840
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
+ S + R+AF + +DDI DSAD+P+ GR+WW+ A++P+Q LA C+ +++A+R+P+P
Sbjct: 841 KKRESLQARLAFADEIMDDILDSADQPMTGRKWWMEADEPWQALACCMEIAKAVRAPNPA 900
Query: 671 STISHIPVH 679
+ +SH PVH
Sbjct: 901 AYVSHFPVH 909
>gi|396464712|ref|XP_003836965.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
gi|312213521|emb|CBX89951.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
Length = 1425
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 190/354 (53%), Gaps = 14/354 (3%)
Query: 333 VKVGCRLIQLLMETAYIQP-PVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRYG-VIEC 389
K+G ++LL+ A + VD + G+ AF H + SF + G++ G ++
Sbjct: 557 TKLGAMCLELLLRAATMTVVAVDPKTGEEVSTNIAAFHHQV-SFHQ----GKKVGYIVPH 611
Query: 390 DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIK- 447
L+ K + R + +PM+V P W Y GG++ P V+R G QR +
Sbjct: 612 HDLMAKLRNDSVRAIANVKLPMVVEPKKWTSYEDGGYYTTPQKVVRQKLGDSAQRAYAQS 671
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNT 506
++ V LD LG W++N + V+ + W +G +AGLV +E V P +P
Sbjct: 672 AIDNGDMQKVLSGLDVLGKVPWQINNAVFDVMAQAWNNGESIAGLVSEELRVQRPPEPPA 731
Query: 507 DDETEIK-KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
D + +W K++ + + HSQRC +L AR E+ Y+PH++DFRGRAY
Sbjct: 732 DAPYRDRAEWSKKLQEYENEKGGLHSQRCFQNFQLETARAFAREKAIYFPHSVDFRGRAY 791
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+ P LNH+GSD+ RG+L+F G LG GL WLKIHLANLY G DK S R F +
Sbjct: 792 PIPPILNHIGSDISRGLLKFAHGKELGPVGLQWLKIHLANLY--GFDKASLREREQFALD 849
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+D+I DSA PL GRRWW AEDP+QCLA C+ L A P P +S +PVH
Sbjct: 850 KMDEIRDSATNPLTGRRWWASAEDPWQCLACCMELKSAFDLPDPTRYVSQLPVH 903
>gi|238879434|gb|EEQ43072.1| hypothetical protein CAWG_01309 [Candida albicans WO-1]
Length = 1280
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 182/628 (28%), Positives = 285/628 (45%), Gaps = 86/628 (13%)
Query: 91 SESELSGSEEVQELIDQFNEK---------GVSILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L +++V+++I+ +++ ++ + S L + +++ + +
Sbjct: 299 SEAALKFADQVEKIIEDVDDEVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLE 358
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLG 185
+++QI+I E W+ +E Q DL L C + L LP ++ L
Sbjct: 359 RQKQIEIRGIEGAKEKWKHDFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEA 418
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--- 242
I KD A+D+ YAP+ + D +IT+ +L L T G VR
Sbjct: 419 LINGNNSVIEKDDPNAKDR---AMYAPFILKISPDKAIIITILELFKLHST-GGVVRGFR 474
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
+A +G+AIE E RI L E + Q+ L ++
Sbjct: 475 AYKAIQSVGKAIEAEYRI----------------------GLQAKKENKLFSQKHLSPQL 512
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L++ R + KG+ + W ++G L+ +LM A + + D
Sbjct: 513 QKLMR-------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIED 565
Query: 363 IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRG 420
PAF H + + + G R GVI+ + L T I P +PMLV P W
Sbjct: 566 FHPAFYHGM-----QFIAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNS 620
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG + + ++R + + +K R L VF+ L+ LG+T W VNK++ VI
Sbjct: 621 FYGGGSLYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVI 680
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKP--------NTDDETEIKKWKWKVKTAKKQNSEKHS 531
W SG + P+ E+P N+D + + K + + S K S
Sbjct: 681 SHYWNSGEEFLSIP-----PVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNK-S 734
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRCD +L +AR E+ ++PHNLDFRGRAYP+ P+ NHLG DL R + F +G L
Sbjct: 735 QRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKEL 793
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL+WLKI LAN+Y GVDK S RV F +L+ + +SA P WW AE P+
Sbjct: 794 GEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPW 851
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
Q L+ C L+EA + P +SH+PVH
Sbjct: 852 QALSVCFELAEAYKLDDPTKFVSHLPVH 879
>gi|68473800|ref|XP_719003.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
gi|68474009|ref|XP_718901.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440694|gb|EAK99997.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440800|gb|EAL00102.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
Length = 1300
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 182/628 (28%), Positives = 285/628 (45%), Gaps = 86/628 (13%)
Query: 91 SESELSGSEEVQELIDQFNEK---------GVSILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L +++V+++I+ +++ ++ + S L + +++ + +
Sbjct: 319 SEAALKFADQVEKIIEDVDDEVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLE 378
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLG 185
+++QI+I E W+ +E Q DL L C + L LP ++ L
Sbjct: 379 RQKQIEIRGIEGAKEKWKHDFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEA 438
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--- 242
I KD A+D+ YAP+ + D +IT+ +L L T G VR
Sbjct: 439 LINGNNSVIEKDDPNAKDR---AMYAPFILKISPDKAIIITILELFKLHST-GGVVRGFR 494
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
+A +G+AIE E RI L E + Q+ L ++
Sbjct: 495 AYKAIQSVGKAIEAEYRI----------------------GLQAKKENKLFSQKHLSPQL 532
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L++ R + KG+ + W ++G L+ +LM A + + D
Sbjct: 533 QKLMR-------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIED 585
Query: 363 IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRG 420
PAF H + + + G R GVI+ + L T I P +PMLV P W
Sbjct: 586 FHPAFYHGM-----QFIAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNS 640
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG + + ++R + + +K R L VF+ L+ LG+T W VNK++ VI
Sbjct: 641 FYGGGSLYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVI 700
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKP--------NTDDETEIKKWKWKVKTAKKQNSEKHS 531
W SG + P+ E+P N+D + + K + + S K S
Sbjct: 701 SHYWNSGEEFLSIP-----PVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNK-S 754
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRCD +L +AR E+ ++PHNLDFRGRAYP+ P+ NHLG DL R + F +G L
Sbjct: 755 QRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKEL 813
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G+ GL+WLKI LAN+Y GVDK S RV F +L+ + +SA P WW AE P+
Sbjct: 814 GEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPW 871
Query: 652 QCLATCINLSEALRSPSPESTISHIPVH 679
Q L+ C L+EA + P +SH+PVH
Sbjct: 872 QALSVCFELAEAYKLDDPTKFVSHLPVH 899
>gi|403169890|ref|XP_003329308.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168465|gb|EFP84889.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1409
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 247/497 (49%), Gaps = 54/497 (10%)
Query: 222 MAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDS 281
+AV+ + + +G N G + + +G+AIENE Q+ K + N + +
Sbjct: 498 VAVVEVIREMGNSTINDG-AKSIGLFIALGKAIENEWYAQTI------KAIPELNQKLLA 550
Query: 282 EPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG-HVDSKPWGQDALVKVGCRLI 340
T + E L + I K +L+ + ++ H D+ W KVG ++
Sbjct: 551 AIKTLNQENLDATASRSVDHTVRKIWKSELKNYQADLQAIHGDNFDWTIQQRSKVGALVM 610
Query: 341 QLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV--RKGL 397
+ L+ET+ I + V + G +++PAF T + F G+R GV + + V R L
Sbjct: 611 RGLLETSKITRSTVLEDGSVYEEVQPAFYQTTQYF-----DGKRVGVTKMNEAVAERLDL 665
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ-LEP 456
+ + Y+PM+ P+ W G + + +MRT + +Q + R LE
Sbjct: 666 DPANVSLHPRYLPMVCRPMPWTHPKNGAYLVHGAPLMRTRDSPEQALHLLEAHRFHGLEN 725
Query: 457 VFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL----------VDQED------VPL 500
V++ALD LG+T W +N+ + + +W G LAG+ DQ + P
Sbjct: 726 VYKALDKLGNTPWNINRPVFDTMSTVWNQGIQLAGIPIRDPHLNLKPDQIEKLFFSPPPS 785
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQNSEK------------------HSQRCDIELKLSV 542
P +DDE + +++ +N + QRC + +L +
Sbjct: 786 STTPASDDEHHDQLENQSSSSSQLENPRSEGEKKEIYRSLLASRRSAYGQRCSVNYQLEI 845
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
AR +E FY+PHN+DFRGRAYP+ LNH+G D+ RG+L+F E LG+ GL WLKIH
Sbjct: 846 ARAYLNET-FYFPHNIDFRGRAYPIPANLNHIGDDISRGLLKFAEEKELGEDGLRWLKIH 904
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
L+N Y G DK S + R F E L+ +FDSADRPLEG+RWWL +EDP+Q LA C+ L+
Sbjct: 905 LSNKY--GNDKASLDDRAKFIEERLELVFDSADRPLEGKRWWLESEDPWQTLAGCMELTA 962
Query: 663 ALRSPSPESTISHIPVH 679
ALRSP P + S +PVH
Sbjct: 963 ALRSPDPTAYRSSLPVH 979
>gi|395750053|ref|XP_003779053.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Pongo abelii]
Length = 1169
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 203/366 (55%), Gaps = 17/366 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK +I +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLIFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + + +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPAEAHLPHSAAPARKAEVRRGLAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ +++A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVAKAVRASDPAAYVSH 916
Query: 676 IPVHMV 681
+PVH V
Sbjct: 917 LPVHQV 922
>gi|402903464|ref|XP_003914585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Papio
anubis]
Length = 1226
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 202/365 (55%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
+PW +++G +L ++L++ + +D Q G S + P H + SF ++
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLDSQHGSS--RLVPVLYH-VYSFRNV----QQ 610
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P + LE + +PML PPL W + G P+ +MRT GA
Sbjct: 611 IGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGA 670
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQED 497
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 671 TQHQELLETCPPAALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPASE 730
Query: 498 VPLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P + + + ++ +K E HS R + +LS+A+ ++ F+
Sbjct: 731 APQPAEAHLPQSAAPARKAELRRELARCQKMAREMHSLRAEARYRLSLAQHLRGRV-FWL 789
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL+WLKIHL NL G +
Sbjct: 790 PHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLNWLKIHLVNL-TGSKKRE 848
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
R+AF E +DDI DSAD+P+ GR+WW+GAE+P+Q LA C+ ++ A+RS P + +S
Sbjct: 849 PLRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRSSDPAAYVS 908
Query: 675 HIPVH 679
H+PVH
Sbjct: 909 HLPVH 913
>gi|300120043|emb|CBK19597.2| unnamed protein product [Blastocystis hominis]
Length = 595
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 170/282 (60%), Gaps = 9/282 (3%)
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
+ G I Y PMLVPP W + GG + MRTHG++ Q + + ++ L V
Sbjct: 16 DSRGEISFIRYKPMLVPPRPWLSVDSGGFISQKTVFMRTHGSKLQTDCLY---QADLTSV 72
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKW 517
F++L+ LG W +NK +L V + +W +GG + + D+ +P+ + E + +K
Sbjct: 73 FRSLNILGKVGWVINKDVLKVAEAVWENGGGELDIPSRTDLKMPDPSEFESEKKYRKAMM 132
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
K+K ++N + HS RCD+ KL +AR+ +++ Y+P NLDFRGR YP+ P+LNHLG+D
Sbjct: 133 KIK---QKNYDLHSLRCDLGYKLDIAREFQNDT-IYFPMNLDFRGRVYPIPPHLNHLGND 188
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
LCRG+L F PLG+ GL WLKI +ANLY G DK+S++ R + + HL I +S P
Sbjct: 189 LCRGLLSFARKKPLGERGLFWLKIQVANLY--GNDKISFDDRSKWVDEHLPAIRESVRNP 246
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L WW +DP+Q LATC+ A+ SP PE+ +S+IPVH
Sbjct: 247 LAPNAWWKEGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVH 288
>gi|410209414|gb|JAA01926.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410265918|gb|JAA20925.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410349645|gb|JAA41426.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
Length = 1230
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + +V +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 916
Query: 676 IPVH 679
+PVH
Sbjct: 917 LPVH 920
>gi|119581581|gb|EAW61177.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Homo
sapiens]
Length = 1021
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 202/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H + SF ++
Sbjct: 457 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYH-VYSFRN----VQQI 510
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 511 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 570
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 571 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 630
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 631 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLP 689
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 690 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 748
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 749 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 808
Query: 676 IPVH 679
+PVH
Sbjct: 809 LPVH 812
>gi|451993672|gb|EMD86144.1| hypothetical protein COCHEDRAFT_1198114 [Cochliobolus
heterostrophus C5]
Length = 1432
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 166/570 (29%), Positives = 262/570 (45%), Gaps = 64/570 (11%)
Query: 144 RQIKIETEAWEQAAKEYQ---DLLADMCEQKLAPNLPYVKSLFLGWFEPL--------RD 192
RQI++E + E A K ++ + L ++ + P ++++ GW+ L D
Sbjct: 375 RQIQMEQDGVEAAVKRWKAEDEKLQEIGIHGIMNKKP-IQAIMYGWYTALVPLFKKRIED 433
Query: 193 A----IAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE----VRVV 244
A + +AT +D Y + + +A IT+ + + GE +++
Sbjct: 434 AKKVLLEPPKATTRDDAHE--YGVWLERCTPEKLAAITVARATSSAVKGKGEDSSALKIA 491
Query: 245 QAACQIGEAI------ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298
+ +G I E + R +F K K++ T NL L
Sbjct: 492 SLSIAVGNDIQDYLNAETQTRRDAFLK--KQRKQTRLNLVS-----------------TL 532
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA--YIQPPVDQL 356
K V S + + Q + + + A K+G I+ L+++A + +
Sbjct: 533 AKSVASSSAETETQSAKSSI-FEFEKVDMPLSARTKLGAMCIEHLLQSATLVVTAKDPRT 591
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPP 415
G S AF H + +G++ G + + + H I +PM+V P
Sbjct: 592 GKSVSRSMAAFHHQIGFH-----QGKKLGFLVPHHELMDKMRTDSVHSIQTVRLPMVVEP 646
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGA-RQQRETIKMT-PRSQLEPVFQALDTLGSTKWRVNK 473
W + GG++ +P ++R G QR ++ + V LD LG W++N
Sbjct: 647 KPWSSFEDGGYYTVPQKIVRQKGGDSAQRAYAQLAIENGDMFKVMAGLDVLGKVPWQINA 706
Query: 474 RILGVIDRMWASGGCLAGLVDQEDVP---LPEKPNTDDE-TEIKKWKWKVKTAKKQNSEK 529
+ V+ R W +G + LV ++ + P +P+ + E +W ++ +
Sbjct: 707 PVFDVMARAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGL 766
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
HSQRC +L AR +E+ Y+PH++DFRGRAYP+ P LNH+GSDL RG+L+F G
Sbjct: 767 HSQRCFQNFQLETARAYANEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGK 826
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
LG GL WLKIHLANLY G DK S R FT +H+ +I DSA +PLEG+RWW AED
Sbjct: 827 ELGTVGLQWLKIHLANLY--GFDKASLREREQFTMDHMSEICDSASQPLEGQRWWTKAED 884
Query: 650 PFQCLATCINLSEALRSPSPESTISHIPVH 679
P+QCLA CI L A P P +S +PVH
Sbjct: 885 PWQCLACCIELKNAFDLPDPTRFVSQLPVH 914
>gi|395513402|ref|XP_003775309.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Sarcophilus harrisii]
Length = 925
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 200/372 (53%), Gaps = 27/372 (7%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
+ K W LV++G +L+++++++ ++ P + ++ + SF L
Sbjct: 266 IQEKVWPDVVLVQLGTQLVEIMVQSIHM--PTNLFSSQAEKKLIPVLYHVYSF----LSV 319
Query: 382 RRYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
++ G I+ P + + + MPML PP+ W + G + P+ +MR
Sbjct: 320 KQIGFIKPHPSFSQLVADAACTKLTFDSSVMPMLCPPMPWISPHFGAYILHPTKLMRCLD 379
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
G Q ++ ++ P+ L V AL+ LGS W+VN+ +L +I ++ S G + D
Sbjct: 380 GTVQHQQLLESCPKQNLHAVLDALNQLGSCAWKVNQPVLDLIISIFNSKGS-----KKLD 434
Query: 498 VPLP--EKP--------NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
VP P E P +E K + ++ K E +S R D KLS+A ++
Sbjct: 435 VPPPLSEAPVPPSYQLSKDASSSEKAKLRREIAQCHKTAREMYSLRTDALYKLSIAHHLR 494
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ F++PHN+DFRGR YP P+ NHLGSD+ R +L F EG PLG GL WLKIHL NL
Sbjct: 495 DQ-IFWFPHNMDFRGRTYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLINL- 552
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G K S + R+A+ L+DI DSAD PL GR+WW+ ++P+Q LA C+ ++ A+RSP
Sbjct: 553 TGLKKKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIARAVRSP 612
Query: 668 SPESTISHIPVH 679
PE+ ISH P+H
Sbjct: 613 DPEAYISHFPIH 624
>gi|118360511|ref|XP_001013489.1| DNA-dependent RNA polymerase family protein [Tetrahymena
thermophila]
gi|89295256|gb|EAR93244.1| DNA-dependent RNA polymerase family protein [Tetrahymena
thermophila SB210]
Length = 1410
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 173/589 (29%), Positives = 288/589 (48%), Gaps = 80/589 (13%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L RQ+ +E E+ QA ++ + D+ + LA N+ + K + WF L I ++Q
Sbjct: 405 LFERQLILEQESQSQAVNKFLKVYEDLNKFGLAVNIGFAKRYIMNWFPNLCKVIKEEQQQ 464
Query: 201 A---QDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--------------V 243
+ K + YA Y L A+ +A++++ +L+ ++ + + + +
Sbjct: 465 CLLGELKGERKYYATYLTKLSAERIAILSLTELMKQILRISNKFKESAENMENTIVDCSI 524
Query: 244 VQAAC--QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL-------------TNDP 288
V A IGEA+ + + K K+K D LE E + T
Sbjct: 525 VSKAIFSSIGEAVNLQYIYEQEEKLNKEKEKKD--LESLVEKINSNNTSNSSEEEVTQRA 582
Query: 289 EKLI--KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
+K + K +E +K + SL KK+ K + + +K+G LI L+ ET
Sbjct: 583 KKYLADKTKEANQKIMESLYKKK-----NSTSKLNYQEIGIPKTIQLKIGSLLIYLMKET 637
Query: 347 AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY-GVIECDPLVRKGLEKTGRHMI 405
I+ + ++H L K++ Y GVI + L +
Sbjct: 638 IQIRNE-----------QNFWIHLLVPSYKKSKNNDGYVGVININEDFIISLYEQSEKSE 686
Query: 406 IPYM------PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
P+M PM+ P W+ Y GG++ P+ +MR H + Q K+ S L ++
Sbjct: 687 SPFMHLERCLPMIYKPAPWQDYEIGGYYQRPTNLMRIHESPIQE---KVLSYSDLSKMYN 743
Query: 460 ALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL----VDQEDV----PLPEKPNTDDETE 511
L+T+ T WR+NK++ V++++W GG + D +D L E N D++
Sbjct: 744 ILNTVSQTAWRINKKVFDVMEKIWEEGGGQGEIPRRFYDYKDYVYQYQLKECKNRDEQQR 803
Query: 512 IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYL 571
+ K K++ + + HS R D +LK++VA+ ++ E Y+PHN+DFRGR YP+ P+L
Sbjct: 804 LMK---KIQEQR----DMHSMRSDFQLKINVAKAFRNIEKIYFPHNVDFRGRIYPIPPHL 856
Query: 572 NHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF 631
NH+G+D+ RG+LE+ E +GK G +WLK+HL+NL G DKLS+ RVAF E+ +++
Sbjct: 857 NHMGADISRGLLEYSESKKIGKTGWYWLKVHLSNLL--GQDKLSFPERVAFAESQFENVK 914
Query: 632 DSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
A PL+ R W+ ED +Q LAT +++EAL+ +PE ISH+ VHM
Sbjct: 915 RWASDPLKHRE-WIQVEDAWQALATIFDVAEALKLENPEDYISHLHVHM 962
>gi|62089426|dbj|BAD93157.1| DNA-directed RNA polymerase variant [Homo sapiens]
Length = 1072
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 202/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H + SF ++
Sbjct: 407 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYH-VYSFRNV----QQI 460
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 461 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 520
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 521 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 580
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 581 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 639
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 640 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 698
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 699 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 758
Query: 676 IPVH 679
+PVH
Sbjct: 759 LPVH 762
>gi|347948643|pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 469 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 522
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 523 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 582
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 583 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 642
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 643 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 701
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 702 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 760
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 761 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 820
Query: 676 IPVH 679
+PVH
Sbjct: 821 LPVH 824
>gi|348504337|ref|XP_003439718.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Oreochromis niloticus]
Length = 1352
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 166/283 (58%), Gaps = 21/283 (7%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGST 467
MPML PP+ W G + P+ +MRT GA Q E ++ L ++ +L+ LG+
Sbjct: 745 MPMLCPPVPWTSVKFGAYLLTPTKLMRTVDGATQHEELLEKC--QNLHAIYDSLNQLGNC 802
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP--EKP-----NTDDET----EIKKWK 516
W++NK +L +I ++ G D+ D+P P E P N D T E K
Sbjct: 803 AWKINKPLLDIIISIFNDRGS-----DKLDIPPPLSEAPKIPHFNPQDPTYTASEKAHMK 857
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+V AKK+ SE HS R D KLS+A M+DE F++PHN+DFRGR YP PY NHLGS
Sbjct: 858 RQVINAKKKCSEMHSLRMDALYKLSIANHMRDE-IFWFPHNMDFRGRTYPCPPYFNHLGS 916
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
D+ R +L F EG LG GL WLKIHL NL G + S +GR+ + ++DI DSAD
Sbjct: 917 DVTRAILMFAEGKLLGPKGLDWLKIHLVNL-TGLKKRSSLQGRLEYANTIMEDILDSADN 975
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL GR+WW+ A++P+Q LA C+ ++ A+RSP P IS+ PVH
Sbjct: 976 PLNGRKWWMNADEPWQALACCMEIANAVRSPDPTQFISYFPVH 1018
>gi|119581582|gb|EAW61178.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Homo
sapiens]
Length = 1245
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 580 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 633
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 634 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 693
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 694 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 753
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 754 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 812
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 813 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 871
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 872 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 931
Query: 676 IPVH 679
+PVH
Sbjct: 932 LPVH 935
>gi|71052166|gb|AAH98387.1| Polymerase (RNA) mitochondrial (DNA directed) [Homo sapiens]
Length = 1230
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHHSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 916
Query: 676 IPVH 679
+PVH
Sbjct: 917 LPVH 920
>gi|2114396|gb|AAB58255.1| mitochondrial RNA polymerase [Homo sapiens]
Length = 1230
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 916
Query: 676 IPVH 679
+PVH
Sbjct: 917 LPVH 920
>gi|110618253|ref|NP_005026.3| DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]
gi|50403691|sp|O00411.2|RPOM_HUMAN RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|2979529|gb|AAC06147.1| RPOM_HUMAN [Homo sapiens]
Length = 1230
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 916
Query: 676 IPVH 679
+PVH
Sbjct: 917 LPVH 920
>gi|395831257|ref|XP_003788721.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Otolemur
garnettii]
Length = 1227
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 200/367 (54%), Gaps = 23/367 (6%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L ++L++ + P + P H + +S+ R
Sbjct: 563 QPWPVPVLLQLGRQLAEILVQAVQM-PGSLAAPQGSCRLIPVLYHVYSFRSY-------R 614
Query: 383 RYGVIECDP----LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR-TH 437
+ G+++ P L+ K E T + +PML PPL W + G P+ +MR
Sbjct: 615 QIGILKPHPAFVQLLAKAAEPTLTFETVD-VPMLCPPLPWTSPHSGAFLLSPTKLMRAVE 673
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
G Q + ++ P ++L AL LG+ WRVN R+L ++ ++ GC V
Sbjct: 674 GTTQHQRLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFRGKGCSHLGVPPPA 733
Query: 498 VPLPEKPNTD---DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGF 552
P P D +K + + + A+ K E HS R D +LS+A+ ++ F
Sbjct: 734 SEAPRPPEGHLPPDAPPARKAELRRELARCLKVAREMHSLRADALYRLSLAQHLR-HHIF 792
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
+ PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHLANL G
Sbjct: 793 WLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLANL-TGLKK 851
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
+ S R+AF + +DDI DSAD+P+ GR+WW+GA++P+Q LA C+ ++ A+R+P+P +
Sbjct: 852 RASLHERLAFADEVMDDILDSADQPMMGRKWWMGADEPWQALACCMEIARAVRTPNPATY 911
Query: 673 ISHIPVH 679
+SH+PVH
Sbjct: 912 VSHLPVH 918
>gi|451856581|gb|EMD69872.1| hypothetical protein COCSADRAFT_32528 [Cochliobolus sativus ND90Pr]
Length = 1438
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/569 (28%), Positives = 257/569 (45%), Gaps = 62/569 (10%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKL--APNLPYVKSLFLGWFEPLRDAIAKD---- 197
RQI++E + E A K ++ M E + N ++++ GW+ L K
Sbjct: 380 RQIQMEQDGMEAAVKRWKAEDEKMQEIGIHGVMNTKSIQAMMYGWYTALVPLFKKRIEHA 439
Query: 198 --------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE----VRVVQ 245
+AT +D Y + + +A IT+ + + GE +++
Sbjct: 440 KQVLLEPPKATTRDDAHE--YGVWLERCKPEKLAAITVARSTQSAVKGKGEDSSALKIAA 497
Query: 246 AACQIGEAIEN------EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK 299
+ +G IE+ + R +F K +K+ +L K
Sbjct: 498 LSIAVGNDIEDYLNAETQTRRDAFLKKQRKQT------------------RLNLVSTLAK 539
Query: 300 KRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA--YIQPPVDQLG 357
TS +KQ +++ P A K+G I+ L+++A + + G
Sbjct: 540 SGSTSSTEKQPQSAKSNMLEFEKVHMPLS--ARTKLGAMCIEQLLQSATLVVTAKDPRTG 597
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPL 416
S AF H + +G++ G + + + H I +PM+V P
Sbjct: 598 KSVSRSMAAFHHQVGFH-----QGKKLGFLVPHHELMAKMRTDSVHSIQTVRLPMVVEPK 652
Query: 417 NWRGYNRGGHFFLPSYVMRTHGA-RQQRETIKMT-PRSQLEPVFQALDTLGSTKWRVNKR 474
W + GG++ +P ++R G QR ++ + V LD LG W++N
Sbjct: 653 PWSSFEDGGYYTVPQKIVRQKGGDTAQRAYAQLAIENGDMSKVMAGLDVLGKVPWQINAP 712
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVP---LPEKPNTDDE-TEIKKWKWKVKTAKKQNSEKH 530
+ V+ R W +G + LV ++ + P +P+ + E +W ++ + H
Sbjct: 713 VYDVMARAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLH 772
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
SQRC +L AR +E+ Y+PH++DFRGRAYP+ P LNH+GSDL RG+L+F G
Sbjct: 773 SQRCFQNFQLETARAYVNEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKE 832
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
LG GL WLKIHLANLY G DK S R F +H+ +I DSA +PLEG+RWW AEDP
Sbjct: 833 LGAVGLQWLKIHLANLY--GFDKASLREREQFAMDHMSEICDSASQPLEGQRWWTKAEDP 890
Query: 651 FQCLATCINLSEALRSPSPESTISHIPVH 679
+QCLA CI L A P P +S +PVH
Sbjct: 891 WQCLACCIELKNAFDLPDPTRFVSQLPVH 919
>gi|326678540|ref|XP_685138.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Danio rerio]
Length = 1248
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 200/375 (53%), Gaps = 34/375 (9%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D PW +V++G L+ L++ IQ + + PA L R
Sbjct: 575 DDTPWPMILMVQLGSFLVDLMVHELKIQSNI---------LNPALEKKLIPILYHMYTFR 625
Query: 383 ---RYGVIECDPLVRKGL-EKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMR- 435
+ G I+ P++ + L E T + MPML PP+ W G + P+ +MR
Sbjct: 626 SNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRA 685
Query: 436 THGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
+ GA Q + ++ T L V +L+ +GS W++NK +L +I ++ G D+
Sbjct: 686 SDGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGS-----DK 740
Query: 496 EDVPLPE---------KPNTDDETEIKKWKWKVK--TAKKQNSEKHSQRCDIELKLSVAR 544
+P P P+ T+++K K + AKK +E HS R D KLS+A
Sbjct: 741 LSIPPPLSEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIAN 800
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
++D+ F++PHN+DFRGR YP+ PY NHLGSD+ R +L F EG PLG GL WLKIHL
Sbjct: 801 HVRDK-IFWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLV 859
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
NL G + S +GR+ + E+ ++DI DSAD PL+GR+WW+ A++P+Q LA C+ ++ A
Sbjct: 860 NL-TGLKKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIANAS 918
Query: 665 RSPSPESTISHIPVH 679
RSP IS+ PVH
Sbjct: 919 RSPDHHKFISYFPVH 933
>gi|260830109|ref|XP_002610004.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
gi|229295366|gb|EEN66014.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
Length = 804
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 206/373 (55%), Gaps = 32/373 (8%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D W + ++ +G L+ ++ I + + S + PA H +T +K
Sbjct: 130 DECAWPINLIINLGSLLVDAMVREVKIDNNLFR-KTSEQKLIPALYHM---YTYRNIK-- 183
Query: 383 RYGVIECDPLVRK---GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ G+I+ P++ + G + T +PML+PP+ W +GG P+ +MR++ A
Sbjct: 184 QVGIIKPHPMLVQLVEGAQDTSLVFDSSLLPMLMPPVPWSSVKKGGFLLSPTKLMRSNDA 243
Query: 440 RQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
Q E + + S+L P+ +L+ LG+ W++N+ IL ++ R++ + G + D+
Sbjct: 244 TLQHELLLEKVGTSELYPILDSLNQLGACAWKINQPILDLVIRVFNNKGS-----KELDI 298
Query: 499 PLP--EKPN----------TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM 546
P P E P D+ ++K ++ +K SE HS R D+ KLS+A +
Sbjct: 299 PQPVSEAPTFPKLGTEILTNGDKQAMRK---QMAQVRKLRSEMHSLRMDMLYKLSIANRF 355
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
+ E FY+PHN+DFRGR YP P+ NHLGSD+ R +L F EG PLG+ GL WLKIHL NL
Sbjct: 356 R-HEIFYFPHNMDFRGRVYPCPPHFNHLGSDVARSILVFAEGRPLGEKGLEWLKIHLVNL 414
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
G K S R+ + +++IFDSAD P+ G +WW+ A++P+Q LA C+ ++ A+RS
Sbjct: 415 -TGFKKKNSQMERLEYANEMMEEIFDSADDPMTGHKWWMTADEPWQALACCMEIANAVRS 473
Query: 667 PSPESTISHIPVH 679
P P++ +SH PVH
Sbjct: 474 PDPQAYVSHFPVH 486
>gi|410921290|ref|XP_003974116.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Takifugu rubripes]
Length = 1102
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 165/282 (58%), Gaps = 19/282 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
MPML PP+ W N G + P+ +MRT Q E + + L PV +L+ LG+
Sbjct: 514 MPMLCPPMPWSSVNFGAYLLTPTKLMRTVEGAMQHEML-LEKCQNLHPVLDSLNQLGNCA 572
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP--EKP-----NTDD----ETEIKKWKW 517
W++NK +L +I ++ G ++ D+P P E P N +D +E K
Sbjct: 573 WKINKPVLDIIISIFNDRGS-----EKLDIPPPLSEAPTIPYFNPNDPNINASEKALLKR 627
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+V +AKK+ E HS R D KLS+A ++DE F++PHN+DFRGR YP PY NHLGSD
Sbjct: 628 QVMSAKKKYGEMHSLRMDALYKLSIANHVRDE-IFWFPHNMDFRGRTYPCPPYFNHLGSD 686
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ R L F EG PLG GL WLKIHL NL G + S + R+ + ++DIFDSAD P
Sbjct: 687 VTRATLLFAEGKPLGTKGLDWLKIHLVNL-TGLKKRSSLQERLEYANTIMEDIFDSADNP 745
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L G++WW+ A++P+Q L+ C+ ++ A+RSP ISH PVH
Sbjct: 746 LTGKKWWMNADEPWQTLSCCMEIANAVRSPDSAQFISHFPVH 787
>gi|332255805|ref|XP_003277019.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Nomascus
leucogenys]
Length = 1230
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 202/364 (55%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+L S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPSSLDKLRRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN +L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGPVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K + HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEVHLPHSATPARKAELRRELAHCQKVARDMHSLRVEALYRLSLAQHLRDCV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +L F +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLVFAQGRPLGPHGLDWLKIHLVNL-TGFKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R+AF E +DDI DSADRPL GR+WW+GAE+P+Q LA C+ +++A+R+ P + +SH
Sbjct: 857 LQKRLAFAEEVMDDILDSADRPLTGRKWWMGAEEPWQTLACCMEVAKAVRASDPAAYVSH 916
Query: 676 IPVH 679
+PVH
Sbjct: 917 LPVH 920
>gi|223995603|ref|XP_002287475.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220976591|gb|EED94918.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 1217
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 183/680 (26%), Positives = 304/680 (44%), Gaps = 153/680 (22%)
Query: 131 TGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPL 190
T T KY L+R Q+++E E+ E+A + ++ +P ++ + W+ L
Sbjct: 239 TRHSTDKYKELRRLQLQLEIESTEEAVMKCLSTWNSARDRSDHTTIPAIRKVVTSWYGSL 298
Query: 191 RDAIAKDQ------------------------------------ATAQDKWKHMTYAPYF 214
+AI +Q A+D+ Y P
Sbjct: 299 TEAIELEQWLYLNGDNKTSSSSQLDTQSGEDGGESTNSNGLQKTDVARDR---TIYGPLL 355
Query: 215 NNLPADMMAVITMHKLVGLLMTNAGEV--RVVQAACQIGEAIENEARIQSFFK------- 265
LP A++ H + + GE+ +VV A I +A+E E + +
Sbjct: 356 CLLPPQKTAILLAHTALSCSVA-GGELGSKVVSLAIYIAQALETEVNVSRALRVRASQRK 414
Query: 266 -------------------STKKKNATD---NNLEGD-----------------SEPLTN 286
STK N +D +N+ D T+
Sbjct: 415 WKMNNLEDEGDEVDGVVQMSTKPPNGSDSLSDNITVDKWVYTATHLKRFLDELSGNGATS 474
Query: 287 DPEKLIKEQEKLKKRVTSLIKK--QKLQQVRGIVK--------------GHVDSKPWGQD 330
+K +K Q +L+ +L++K Q + G + D W
Sbjct: 475 GDQKPLKGQGRLRP---ALVRKRCQDILLAEGFMGEGDDDGTTAPKRPISLTDFAEWDPV 531
Query: 331 ALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIEC 389
VK+G LI+LL+E T++ + + G SP PAF ++ K + G +
Sbjct: 532 LKVKLGAALIRLLLEHTSFSK----RRGSSP---EPAFFYSRKKTGEMKFNG----FVTI 580
Query: 390 DP-LVRKGLEKTGRH---MIIP-YM------PMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
P L++ +++ H I P YM PM+VPP +W+ + GG+ + + MRT
Sbjct: 581 HPELLKIAMKEELSHDSSFISPRYMQNTRCQPMVVPPKDWKAVDDGGYETIKTEFMRTRH 640
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+ Q++ I+ + L VF+ L+ LG W++N+ +L + W G L + Q++
Sbjct: 641 CKTQKDAIR---HADLTQVFEGLNVLGRIPWKINQNVLDAACKCWDDGIALGDIPSQDNH 697
Query: 499 PLPEKPN----------TDDETEIKKWKWKV-KTA-------KKQNSEKHSQRCDIELKL 540
+P P DDE +++ +++ K A K++N + HS RC LKL
Sbjct: 698 QVPPLPTPLDYRDFNLLDDDEKKVQVDAFRIYKDAITKHFRFKQKNMDLHSLRCSAMLKL 757
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+ A+K +D E ++P+N+DFRGRAYP+ P+L+ +GSDLCR +L F PLG GL+WLK
Sbjct: 758 NQAKKFRDFEEIFFPYNVDFRGRAYPVPPHLSIVGSDLCRALLMFAHPKPLGPNGLYWLK 817
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
+HLANL G +K+S++GR F +++++ I + D P G WW+G +DPFQ LATC +
Sbjct: 818 VHLANL--AGANKMSFDGRAQFADDNMESIRAAVDNPFGGNDWWMGFDDPFQGLATCHEI 875
Query: 661 SEALRSPSPESTISHIPVHM 680
+A+ S P + + +PVHM
Sbjct: 876 VKAIDSGDPANYMCSLPVHM 895
>gi|340508072|gb|EGR33869.1| hypothetical protein IMG5_034000 [Ichthyophthirius multifiliis]
Length = 926
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
+PM+ PP W+ Y GG++ P+++MR ++ Q +++ T L V++ L+ +G T
Sbjct: 295 LPMIYPPAKWQDYEMGGYYLRPTHLMRFEDSQLQEKSLFNT---DLSKVYEILNIIGKTP 351
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK--QN 526
WR+NKR+L V++++W GG + G + ++ + E K +K K K +K Q
Sbjct: 352 WRINKRVLNVMEKIWEEGGDI-GEIPKKYYDYTNYIHQYQVDECKDYKEKAKLMRKIQQQ 410
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ HS R D LKL VAR ++ + Y+PHN+DFRGR YP+ P+LNH+G+D CRG+LEF
Sbjct: 411 RDIHSNRSDFLLKLKVARAFQNLDRIYFPHNVDFRGRLYPIPPHLNHIGADRCRGLLEFS 470
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
E +GK G +WLK+H +NL GVDKLS++ RVA+TE+ ++I A P++ R WL
Sbjct: 471 ESKRIGKTGWYWLKVHTSNLL--GVDKLSFDQRVAYTESQFENIKRWASDPIKNRE-WLQ 527
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
ED +Q L+ +SEAL+ +PE ISH+ VHM
Sbjct: 528 VEDCWQALSAIFEVSEALQLENPEDHISHLHVHM 561
>gi|157823583|ref|NP_001100236.1| DNA-directed RNA polymerase, mitochondrial [Rattus norvegicus]
gi|149034664|gb|EDL89401.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 1203
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 200/366 (54%), Gaps = 21/366 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QE 496
Q + ++ P +QL AL LG+ WRVN R+L ++ +++ GC+ V +
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ P P K T + K + + + A+ K E HS R + +LS+A+ ++D F+
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHLRDRV-FW 764
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G +
Sbjct: 765 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLRKR 823
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R+AF + + +I DSAD PL G++WW+ A++P+Q LA C+ +++A+RSP P + +
Sbjct: 824 DSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPTAYV 883
Query: 674 SHIPVH 679
SH+PVH
Sbjct: 884 SHLPVH 889
>gi|149034662|gb|EDL89399.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1076
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 200/366 (54%), Gaps = 21/366 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QE 496
Q + ++ P +QL AL LG+ WRVN R+L ++ +++ GC+ V +
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ P P K T + K + + + A+ K E HS R + +LS+A+ ++D F+
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHLRDRV-FW 764
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G +
Sbjct: 765 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLRKR 823
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R+AF + + +I DSAD PL G++WW+ A++P+Q LA C+ +++A+RSP P + +
Sbjct: 824 DSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPTAYV 883
Query: 674 SHIPVH 679
SH+PVH
Sbjct: 884 SHLPVH 889
>gi|149034663|gb|EDL89400.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 1164
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 200/366 (54%), Gaps = 21/366 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QE 496
Q + ++ P +QL AL LG+ WRVN R+L ++ +++ GC+ V +
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 497 DVPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ P P K T + K + + + A+ K E HS R + +LS+A+ ++D F+
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHLRDRV-FW 764
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G +
Sbjct: 765 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLRKR 823
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R+AF + + +I DSAD PL G++WW+ A++P+Q LA C+ +++A+RSP P + +
Sbjct: 824 DSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPTAYV 883
Query: 674 SHIPVH 679
SH+PVH
Sbjct: 884 SHLPVH 889
>gi|190348218|gb|EDK40635.2| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 232/486 (47%), Gaps = 56/486 (11%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P MAVIT+ +L+ L T +R +A +G+A+E E + Q+ ++
Sbjct: 451 YAPYMILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA- 509
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
E+ L K++ + + +K+ + R K + P
Sbjct: 510 --------------------------ERRSLSKKLKTTNQWKKILRTR---KDYSKENPN 540
Query: 327 ----WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
W KVG L LLM A + PV G ++PAF HT +
Sbjct: 541 ATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGTDPV--TGKQVKTMQPAFHHTY-----QF 593
Query: 379 LKGRRYGVIECD-PLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
L+G+R GV++ L+R+ + + P +PMLVPP W YN GG+ F + ++R
Sbjct: 594 LQGQRLGVLKVHKSLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRI 653
Query: 437 HGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--V 493
+ + +K + L+ V++ L+ LG T W +N + VI W SG + +
Sbjct: 654 KDSAETNAYLKAASDMGNLDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSI 713
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+E P P D + ++ +++ + SQRCD +L +AR E+ Y
Sbjct: 714 VEELDIPPPPPIDADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LY 772
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+ HN+DFRGRAYP+ P+ NHLG+D+ R + F +G +G GL W+KIHLANLY G++K
Sbjct: 773 FSHNVDFRGRAYPLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINK 830
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
RV F +++L I +SA PL WW AE P+Q L C L A P I
Sbjct: 831 APLHERVQFVDDNLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHI 890
Query: 674 SHIPVH 679
SH+P+H
Sbjct: 891 SHLPIH 896
>gi|387541882|gb|AFJ71568.1| DNA-directed RNA polymerase, mitochondrial precursor [Macaca
mulatta]
Length = 1228
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 17/364 (4%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G +L ++L++ + +D S + P H + SF ++
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLDNRHGSS-RLVPVLYH-VYSFRNV----QQI 611
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LE + +PML PPL W + G P+ +MRT GA
Sbjct: 612 GILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGAT 671
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 672 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPASEA 731
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P + + + ++ +K E HS R + +LS+A+ ++ F+ P
Sbjct: 732 PQPAEAHVPQSAAPARKAELRRELARCQKVAREMHSLRAEALYRLSLAQHLRGRV-FWLP 790
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 791 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGFKKREP 849
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+P+ GR+WW+GAE+P+Q LA C+ ++ A+R P + +SH
Sbjct: 850 LRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYVSH 909
Query: 676 IPVH 679
+PVH
Sbjct: 910 LPVH 913
>gi|47215657|emb|CAG01374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 166/282 (58%), Gaps = 19/282 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
MPML PP+ W G + P+ +MRT Q + + + L PV +L+ LG+
Sbjct: 222 MPMLCPPVPWTSVRFGAYLLTPTKLMRTVEGAMQHDVL-LEKCQNLHPVLDSLNQLGNCA 280
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP--EKP-----NTDD----ETEIKKWKW 517
W++NK +L +I ++ G ++ D+P P E P N D +E K
Sbjct: 281 WKINKPVLDIIISIFNDRGS-----EKLDIPPPLTEAPRIPHFNPHDPNYTASEKALMKR 335
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+V +AKK+ SE HS R D KLS+A M+DE F++PHN+DFRGR YP PY NHLGSD
Sbjct: 336 QVMSAKKKYSEMHSLRMDALYKLSIAHHMRDE-IFWFPHNMDFRGRTYPCPPYFNHLGSD 394
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ R L F EG PLG GL WLKIHL NL G + S +GR+ + + ++DI DSAD P
Sbjct: 395 VTRATLLFAEGKPLGAKGLDWLKIHLVNL-TGLKKRSSLQGRLEYADTIMEDILDSADNP 453
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L+G++WW+ A++P+Q L+ C+ ++ A+R+P ISH PVH
Sbjct: 454 LKGKKWWMNADEPWQALSCCMEIANAVRAPDSTQFISHFPVH 495
>gi|146413615|ref|XP_001482778.1| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 232/486 (47%), Gaps = 56/486 (11%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P MAVIT+ +L+ L T +R +A +G+A+E E + Q+ ++
Sbjct: 451 YAPYMILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA- 509
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
E+ L K++ + + +K+ + R K + P
Sbjct: 510 --------------------------ERRSLSKKLKTTNQWKKILRTR---KDYSKENPN 540
Query: 327 ----WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
W KVG L LLM A + PV G ++PAF HT +
Sbjct: 541 ATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGTDPV--TGKQVKTMQPAFHHTY-----QF 593
Query: 379 LKGRRYGVIECD-PLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
L+G+R GV++ L+R+ + + P +PMLVPP W YN GG+ F + ++R
Sbjct: 594 LQGQRLGVLKVHKSLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRI 653
Query: 437 HGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--V 493
+ + +K + L+ V++ L+ LG T W +N + VI W SG + +
Sbjct: 654 KDSAETNAYLKAASDMGNLDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSI 713
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+E P P D + ++ +++ + SQRCD +L +AR E+ Y
Sbjct: 714 VEELDIPPPPPIDADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LY 772
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+ HN+DFRGRAYP+ P+ NHLG+D+ R + F +G +G GL W+KIHLANLY G++K
Sbjct: 773 FSHNVDFRGRAYPLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINK 830
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
RV F +++L I +SA PL WW AE P+Q L C L A P I
Sbjct: 831 APLHERVQFVDDNLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHI 890
Query: 674 SHIPVH 679
SH+P+H
Sbjct: 891 SHLPIH 896
>gi|417406183|gb|JAA49758.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Desmodus rotundus]
Length = 1222
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 202/369 (54%), Gaps = 27/369 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW +V++G +L ++L++T + + Q + ++ P H + +SF R
Sbjct: 557 QPWPLAVVVQLGKQLAEVLVQTVKMPGHLAQRQGTH-NLIPVLYHVYSFRSF-------R 608
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P ++ LE + +PML PPL W + G P+ +MR+ G
Sbjct: 609 QIGILKPHPAFKQLLETAAERTMTFEAAEVPMLCPPLPWTSPHSGAFLLSPTKLMRSVEG 668
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
Q + ++ P + L L LG+ WRVN R+L ++ ++ GC L
Sbjct: 669 TMQHQRLLESCPPTNLHGALDTLTQLGNCAWRVNGRVLDLVLTLFNKKGCPRLGVPAPAS 728
Query: 497 DVPLP------EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ P P K + + + E+++ ++ K E HS R D +LS+A+ +++
Sbjct: 729 EAPRPPENRLSTKASPERKVELRR---QLARCLKVAREMHSLRTDALYRLSLAQHLRNSV 785
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL G
Sbjct: 786 -FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-TGL 843
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
+ S + R+AF + ++ I DSAD+P+ G +WW+ A++P+Q LA C+ +++A+R+P P
Sbjct: 844 KKRESLQARLAFADEMMNKILDSADKPMTGHKWWMEADEPWQALACCMEIAQAVRAPDPA 903
Query: 671 STISHIPVH 679
+ +SH PVH
Sbjct: 904 AYVSHFPVH 912
>gi|238488645|ref|XP_002375560.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|83770340|dbj|BAE60473.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697948|gb|EED54288.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|391866652|gb|EIT75920.1| DNA-directed RNA polymerase RPO41 [Aspergillus oryzae 3.042]
Length = 1375
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 230/486 (47%), Gaps = 48/486 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y +L + +A +T+ ++ E ++V A IG+ +++E + K
Sbjct: 432 YGVYLRSLDPERLAALTILAVISTFSRGGMEKGIKVSAIATGIGKDLQDELIAEMTLKKQ 491
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
+ T D +L +E L R KK + IV P
Sbjct: 492 Q----------------TGDARRLKALREILAGRK----KKDGRASWQKIVHDFEKEDPA 531
Query: 327 --WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEA 378
W KVG L+ L + + PV L + P ++PAF H+ +
Sbjct: 532 AIWPPRVKAKVGAVLMSFLFDVGKV--PV--LTEHPRTDKKTIVMQPAFQHSY-----QI 582
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR-T 436
G++ G + P V + + + ++ +PM+ P W G GG+F S ++R T
Sbjct: 583 NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWNGPKDGGYFIYQSSIVRVT 642
Query: 437 HGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
G Q IK + LE V + L+ LG T WR+N+ + V+ W SG +A L
Sbjct: 643 PGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFEVMLEAWNSGEAIASLAPL 702
Query: 496 EDVPLPEKPNTDDE--TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
P +E KKW ++ + + S HS RC +L VAR +++ FY
Sbjct: 703 NPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCFQNFQLEVARAYRNDT-FY 761
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGRAYP+ PYLN +G+D RG+L F E PLG GL WLKI +ANL G DK
Sbjct: 762 LPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARGLRWLKIQIANL--AGFDK 819
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R +T +HLD++ DSA++ L GRRWWL AEDP+QCLA C L AL+ P P
Sbjct: 820 ASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLAACCELRNALQHPDPTQYP 879
Query: 674 SHIPVH 679
S +P+H
Sbjct: 880 SRLPIH 885
>gi|317136824|ref|XP_001727312.2| DNA-dependent RNA polymerase family protein [Aspergillus oryzae
RIB40]
Length = 1648
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 230/486 (47%), Gaps = 48/486 (9%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y +L + +A +T+ ++ E ++V A IG+ +++E + K
Sbjct: 705 YGVYLRSLDPERLAALTILAVISTFSRGGMEKGIKVSAIATGIGKDLQDELIAEMTLKKQ 764
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
+ T D +L +E L R KK + IV P
Sbjct: 765 Q----------------TGDARRLKALREILAGRK----KKDGRASWQKIVHDFEKEDPA 804
Query: 327 --WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEA 378
W KVG L+ L + + PV L + P ++PAF H+ +
Sbjct: 805 AIWPPRVKAKVGAVLMSFLFDVGKV--PV--LTEHPRTDKKTIVMQPAFQHSYQINW--- 857
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR-T 436
G++ G + P V + + + ++ +PM+ P W G GG+F S ++R T
Sbjct: 858 --GKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWNGPKDGGYFIYQSSIVRVT 915
Query: 437 HGARQQRETIKMTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
G Q IK + LE V + L+ LG T WR+N+ + V+ W SG +A L
Sbjct: 916 PGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFEVMLEAWNSGEAIASLAPL 975
Query: 496 EDVPLPEKPNTDDE--TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
P +E KKW ++ + + S HS RC +L VAR +++ FY
Sbjct: 976 NPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCFQNFQLEVARAYRNDT-FY 1034
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
PHN+DFRGRAYP+ PYLN +G+D RG+L F E PLG GL WLKI +ANL G DK
Sbjct: 1035 LPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARGLRWLKIQIANL--AGFDK 1092
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R +T +HLD++ DSA++ L GRRWWL AEDP+QCLA C L AL+ P P
Sbjct: 1093 ASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLAACCELRNALQHPDPTQYP 1152
Query: 674 SHIPVH 679
S +P+H
Sbjct: 1153 SRLPIH 1158
>gi|357516855|ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 259
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 138/277 (49%), Positives = 176/277 (63%), Gaps = 37/277 (13%)
Query: 1 MWRNLARQSSTRNFKFSPS------KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSF 54
MW LA+++S+R F PS + S NF +KI P F +
Sbjct: 1 MWSKLAKRASSRRFIL-PSQSSTSLRFSHQHNFPEKILR----------HPFSRFSQVGI 49
Query: 55 LSSQKSNLGQSNFTQSIYPFGVLTS-----RSYAS-AAEAIAS---ESELSGSEEV-QEL 104
+S+ LG+SNF+ S +PF + R+Y S AAEAI S E + SGSEEV Q+L
Sbjct: 50 FTSEY-KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKL 108
Query: 105 IDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLL 164
+DQ +++ + +KK + KY ML+RRQIKIETEAWE+AA+EYQ+LL
Sbjct: 109 LDQM------VIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELL 162
Query: 165 ADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAV 224
DM EQKLAPNLPY+KSLFLGWFEPL++AIA DQ +D +++APYFN LP DMMAV
Sbjct: 163 EDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAV 222
Query: 225 ITMHKLVGLLMTNA---GEVRVVQAACQIGEAIENEA 258
ITMHKL+GLLMTN+ G RV+QAACQIGEAIE+E
Sbjct: 223 ITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEV 259
>gi|50543664|ref|XP_499998.1| YALI0A12001p [Yarrowia lipolytica]
gi|49645863|emb|CAG83927.1| YALI0A12001p [Yarrowia lipolytica CLIB122]
Length = 1345
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 150/490 (30%), Positives = 234/490 (47%), Gaps = 61/490 (12%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGE-----VRVVQAACQIGEAIENEARIQSFFKS 266
PY + M+++T+ +++ L T G V+ +G+A+E E R + +
Sbjct: 482 PYLKLMSPKTMSIVTIIEMMRL-QTTVGRSVESGVKTTNLVTSVGQALEIEYRCSQWSEK 540
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR--VTSLIKKQKLQQVRGIVKGHVDS 324
KK L G LK+R V +I + L+ D+
Sbjct: 541 LGKKRTFLKKLTG------------------LKRRLKVMEMIHAEDLE----------DT 572
Query: 325 KP-WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
P W D KVG L+ +L++ A + + PV G S P F H+ + +
Sbjct: 573 VPAWAIDVRAKVGALLVDILIKVARMPVTAKDPV--TGASVTADVPVFCHSY-----QLV 625
Query: 380 KGRRYGVIEC-DPLVRK------GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K +R G++ D +++K G E + + ++PML P W + GG++ +
Sbjct: 626 KRQRLGMVRMHDLMIQKVISTDIGAESSEAFVTPQFLPMLAEPKPWVAWKTGGYYVSQAS 685
Query: 433 VMRTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
VMR + +Q + + R L+ +F L+ LGST W VN ++ ++ ++W +G
Sbjct: 686 VMRARESSEQTAYLDTASERGDLDRLFAGLNKLGSTAWTVNSKVFDIMSKVWNTGEAYLD 745
Query: 492 L-VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ D LPE P +D +W+ + HS RCD KL +AR E+
Sbjct: 746 IPAVNTDNSLPECPEHNDPVARSEWRKMCTVILNKRKSDHSVRCDSNYKLEIARAHLGEK 805
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
++PHN+DFRGRAYP+ P+ NHLGSDL RG+L+F G LG+ GL WLKIH+ANL+ G
Sbjct: 806 -LHFPHNVDFRGRAYPLSPHFNHLGSDLSRGLLQFWHGKELGEEGLRWLKIHMANLHGAG 864
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPL-EGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
K +++ RV FTE+++ I + + PL E W A+ P+Q LA L A P P
Sbjct: 865 --KANFDDRVKFTEDNMAKIRAAVENPLAEENSIWREADYPWQFLAASYELVAAYDLPDP 922
Query: 670 ESTISHIPVH 679
+SHIPV
Sbjct: 923 SKFVSHIPVQ 932
>gi|260942581|ref|XP_002615589.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
gi|238850879|gb|EEQ40343.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
Length = 1311
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 254/519 (48%), Gaps = 52/519 (10%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMT----YAPYFNNLPADMMAVITMHKLV 231
LPYV+ + L + I ++++K K M YAPY +P ++VIT+ +L+
Sbjct: 423 LPYVQEEVSLCRQLLNNEIDMTSLSSEEK-KQMKDRSFYAPYLVLIPPKKLSVITILELL 481
Query: 232 GLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE 289
L T +R +A +G+AIE E + Q + K+ G +N +
Sbjct: 482 KLNSTGGIVDGMRTARAVISVGKAIELEYKSQGLVAAEKR-------FLGRKAKSSNQWK 534
Query: 290 KLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI 349
K+++ ++ G+ S W K+G L LL+ A +
Sbjct: 535 KILRNRKPSGDEA-------------GL------STEWDYPVYAKLGSVLTSLLLHVAKV 575
Query: 350 QPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG--RH 403
PV G +PAF HT + + G+R G+I+ + K L
Sbjct: 576 --PVTGTDPTTGKQVKGKQPAFHHTY-----QFVNGQRLGIIKLHKNLVKQLASNTLINS 628
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ-LEPVFQALD 462
+ +PML+PP +W +N+GG+ F PS ++R + + +K + L+ V++ L+
Sbjct: 629 VQPQLLPMLLPPSDWTSHNQGGYRFTPSTLVRIKDSAETVAYVKAASEANNLDDVYRGLN 688
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKK--WKWKVK 520
LG T W +N ++L VI + W +G + D P P + ++K ++ KV+
Sbjct: 689 VLGHTPWTINAKVLEVISQYWNTGEAFLDIPPVVDEPELPPPLPLNAEPLEKVEYQRKVR 748
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
+ + SQRCD KL +AR E+ Y+PHN+DFRGRAYP+ P+LNHLG+DL R
Sbjct: 749 HVLNEAAAYRSQRCDTNYKLEIARAFVGEK-MYFPHNVDFRGRAYPLPPHLNHLGNDLTR 807
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+ F EG LG+ GL WLKIHLAN+Y G+DK R F +++L+ +F+SA P G
Sbjct: 808 SLFLFWEGRELGERGLEWLKIHLANVY--GMDKAPLAQRAQFVDDNLEHVFESARDPTGG 865
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+WW E P+Q L+ C L EA + P +SH+PVH
Sbjct: 866 SKWWTKGEKPWQVLSVCFELLEAYKLDDPTKYVSHVPVH 904
>gi|452824377|gb|EME31380.1| DNA-directed RNA polymerase, mitochondrial [Galdieria sulphuraria]
Length = 1125
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 160/575 (27%), Positives = 276/575 (48%), Gaps = 56/575 (9%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
++++E +++ +++LL ++ L + L L W PL AI ++Q + K
Sbjct: 273 ELRLEFACLQESLDRFRNLLETAVKRGDIGWLSPAQRLILSWLSPLAFAIKREQQRLKVK 332
Query: 205 WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFF 264
+ L +A+IT+ + + L + + ++G+A++ + +
Sbjct: 333 ISLTKDESHLLRLEPAKLALITIQETLRLTVPRKEGYPYLSLCLEVGKAVQTQCNAEELE 392
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
+ KK + E ++ + E + K+ S + +L Q++ ++K + +
Sbjct: 393 RLRKKLQYEQVHQETMENKQVDNTNTTLTESSESKESSNSF--RIRLHQLKKLLKRNEND 450
Query: 325 KP-------------------WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
K W + ++VG L+ +L++ A P L +
Sbjct: 451 KNGHRPYINLFAYRLTGNAAFWDKLTTLRVGSYLVDMLLKNA---PTQQVLVRTKASSDS 507
Query: 366 AFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYM-------PMLVPPLNW 418
FV T + G++ C +V L R + P++ PM+V P W
Sbjct: 508 QFVSAFWHKTVRGNGNKLQGLVGCRDIVYDIL---SRDLSNPFLNPLPRLRPMVVVPKPW 564
Query: 419 RGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILG 477
G GG+ + S +MR H R Q ++ + L V++ L+ LG+T W+VN +IL
Sbjct: 565 TGPKTGGYLRIRSDLMRCEHSHRSQWNALRT---ANLSKVYEGLNALGATPWKVNTKILE 621
Query: 478 VIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-----ETEIKKWKWKVKTAKKQNSEKHSQ 532
V + +W GG +AGLV++E + +P K N +D E+ + + +++ AKK +E+H+
Sbjct: 622 VAEELWRRGGGIAGLVNRERIDVP-KINFNDFRLLPRNEMTQIRGEIREAKKAVAERHAL 680
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE-GHPL 591
C E+ L AR+ + FY PHN+DFRGRAYP+ L+H+ SDL RG+L F G PL
Sbjct: 681 TCQTEIILQEAREFAKYDVFYLPHNMDFRGRAYPIPSTLHHMSSDLHRGLLMFASPGKPL 740
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE--GRRWWLGAED 649
G+ G++WLK+H+ANL G DK ++E RV +TENH +I A PL+ WW ED
Sbjct: 741 GERGVYWLKVHIANL--AGQDKATFEDRVRWTENHSLEIIQVAQDPLDPNNLEWWSTRED 798
Query: 650 PFQCLATCINLSEALRSPSPESTISH----IPVHM 680
PFQ LA C+ + A S +++SH +P+ M
Sbjct: 799 PFQFLAACVEFANA---ASQGNSMSHYCSSVPIQM 830
>gi|301776278|ref|XP_002923551.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 1228
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 196/373 (52%), Gaps = 30/373 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW LV++G +L ++L+E + + S I + V++ +SF R+
Sbjct: 559 QPWPLPVLVQLGKKLAEVLVEVVRMPGSLVTPQGSCTLIPVLYHVYSFRSF-------RQ 611
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
G+++ P + L H + +PML PPL W + G P+ +MR+
Sbjct: 612 IGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMRSLEGT 671
Query: 441 QQRETI------KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGL 492
Q + + P ++L AL LG+ WRVN R+L ++ ++ + GC L
Sbjct: 672 MQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCPRLGVP 731
Query: 493 VDQEDVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM 546
+ P LP ++ + E+++ +V K E HS R D +LS+A+ +
Sbjct: 732 APPSEAPRPPDGRLPPSASSAQKAEVRR---EVARCLKVAREMHSLRSDALYRLSLAQHL 788
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
+D F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL
Sbjct: 789 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL 847
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
G R+ F + +DDI DSADRP+ GR+WW+ A++P+Q LA C+ ++ A+R+
Sbjct: 848 -TGLKKHEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIARAVRT 906
Query: 667 PSPESTISHIPVH 679
P + +SH PVH
Sbjct: 907 ADPTAYVSHFPVH 919
>gi|281341337|gb|EFB16921.1| hypothetical protein PANDA_012709 [Ailuropoda melanoleuca]
Length = 1170
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 196/373 (52%), Gaps = 30/373 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW LV++G +L ++L+E + + S I + V++ +SF R+
Sbjct: 511 QPWPLPVLVQLGKKLAEVLVEVVRMPGSLVTPQGSCTLIPVLYHVYSFRSF-------RQ 563
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
G+++ P + L H + +PML PPL W + G P+ +MR+
Sbjct: 564 IGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMRSLEGT 623
Query: 441 QQRETI------KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGL 492
Q + + P ++L AL LG+ WRVN R+L ++ ++ + GC L
Sbjct: 624 MQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCPRLGVP 683
Query: 493 VDQEDVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM 546
+ P LP ++ + E+++ +V K E HS R D +LS+A+ +
Sbjct: 684 APPSEAPRPPDGRLPPSASSAQKAEVRR---EVARCLKVAREMHSLRSDALYRLSLAQHL 740
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
+D F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL
Sbjct: 741 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL 799
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
G R+ F + +DDI DSADRP+ GR+WW+ A++P+Q LA C+ ++ A+R+
Sbjct: 800 -TGLKKHEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIARAVRT 858
Query: 667 PSPESTISHIPVH 679
P + +SH PVH
Sbjct: 859 ADPTAYVSHFPVH 871
>gi|74193237|dbj|BAE20618.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 398 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 450
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 451 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 510
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 511 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 570
Query: 498 VPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + T + K + + + A+ K E HS R + +LS+A+ ++ F+
Sbjct: 571 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 629
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 630 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 688
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 689 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 748
Query: 675 HIPVH 679
H+PVH
Sbjct: 749 HLPVH 753
>gi|344307837|ref|XP_003422585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Loxodonta
africana]
Length = 1234
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 159/277 (57%), Gaps = 7/277 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PPL W + G P+ +MR G ++ ++ P + L F AL LG+
Sbjct: 645 VPMLCPPLPWTSPHSGAFLLSPAKLMRAVEGTMLHQQRLEHCPPAALHGAFDALTQLGNC 704
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLV-----DQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
WRVN R+L ++ ++ + GC V D P P + + + +V
Sbjct: 705 AWRVNGRVLDLVLELFHAHGCTRLGVPPPASDAPCPPARRPPPGTPPARLAELRREVARC 764
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
K E S R D +LS+A+ ++ F+ PHN+DFRGR YP P+L+HLGSDL R +
Sbjct: 765 LKAARELRSLRADALYRLSLAQHLRHHGAFWLPHNMDFRGRTYPCPPHLSHLGSDLARAL 824
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
LEF +G PLG GL WLK+HL NL G + S + R+AF + LD++ DSADRP+ GR+
Sbjct: 825 LEFAQGCPLGPHGLDWLKLHLVNL-TGLKKRESLQARLAFADQVLDEVLDSADRPMTGRK 883
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW+ A++P+Q LA C+ L+ ALRSP P S +SH PVH
Sbjct: 884 WWMEADEPWQTLACCMELARALRSPDPTSFVSHFPVH 920
>gi|281332113|ref|NP_766139.2| DNA-directed RNA polymerase, mitochondrial precursor [Mus musculus]
gi|50401559|sp|Q8BKF1.1|RPOM_MOUSE RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|26343407|dbj|BAC35360.1| unnamed protein product [Mus musculus]
gi|74185846|dbj|BAE32793.1| unnamed protein product [Mus musculus]
gi|84570033|gb|AAI10698.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|109734947|gb|AAI17941.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|148699719|gb|EDL31666.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Mus
musculus]
Length = 1207
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 649 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 708
Query: 498 VPLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P + + ++ K E HS R + +LS+A+ ++ F+
Sbjct: 709 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 767
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 768 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVH 679
H+PVH
Sbjct: 887 HLPVH 891
>gi|26351727|dbj|BAC39500.1| unnamed protein product [Mus musculus]
Length = 1207
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 649 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 708
Query: 498 VPLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P + + ++ K E HS R + +LS+A+ ++ F+
Sbjct: 709 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 767
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 768 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVH 679
H+PVH
Sbjct: 887 HLPVH 891
>gi|449273005|gb|EMC82634.1| DNA-directed RNA polymerase, mitochondrial, partial [Columba livia]
Length = 1035
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 195/363 (53%), Gaps = 23/363 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W L+++G +++LL+ A + P + L P + P + L G+ G+
Sbjct: 374 WPYVLLMRLGMHMLELLVRAAKV--PRNILN---PRLEPKLIPVLYHIYSFRSSGQ-VGL 427
Query: 387 IECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQ 442
I+ P+ + + + +PML PP+ W N G + +MR GA Q
Sbjct: 428 IKPHPIFSQIMSDAAEATLTFNSSAIPMLCPPVPWTSPNFGAFVLNDTKLMRFVDGAVQH 487
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP- 501
+ ++ P L PV AL+ LG+ W++N+ +L +I ++ G ++ D+P P
Sbjct: 488 QLLLEQCPPVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----ERLDIPPPV 542
Query: 502 ---EKPNT--DDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+P T K K ++ KK+ +E HS R D KLS+A ++D+ F++PH
Sbjct: 543 SEAPRPPTVPGGSAGSKTQKHELLLYKKKVAEMHSLRMDALYKLSIANYVRDK-VFWFPH 601
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
N+DFRGR YP PY NHLG+D+ R +L F EG PLG GL WLKIHL NL G K +
Sbjct: 602 NMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLVNL-TGLKKKNAL 660
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R+ + +++I DSADRPL GRRWW+ ++P+Q LA C+ +++A R P P + +SH
Sbjct: 661 QERLEYANEIMEEILDSADRPLTGRRWWMDTDEPWQALACCMEIAKASRCPDPAAYVSHF 720
Query: 677 PVH 679
P+H
Sbjct: 721 PIH 723
>gi|148699723|gb|EDL31670.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_e [Mus
musculus]
Length = 935
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 19/367 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 543 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 595
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 596 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 655
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 656 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 715
Query: 498 VPLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P + + ++ K E HS R + +LS+A+ ++ F+
Sbjct: 716 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 774
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 775 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 833
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 834 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 893
Query: 675 HIPVHMV 681
H+PVH V
Sbjct: 894 HLPVHQV 900
>gi|148699720|gb|EDL31667.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Mus
musculus]
Length = 1078
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 649 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 708
Query: 498 VPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + T + K + + + A+ K E HS R + +LS+A+ ++ F+
Sbjct: 709 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 767
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 768 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVH 679
H+PVH
Sbjct: 887 HLPVH 891
>gi|148699721|gb|EDL31668.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_c [Mus
musculus]
Length = 1166
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 19/365 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 649 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 708
Query: 498 VPLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P + + ++ K E HS R + +LS+A+ ++ F+
Sbjct: 709 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 767
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 768 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVH 679
H+PVH
Sbjct: 887 HLPVH 891
>gi|363743780|ref|XP_418204.3| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Gallus
gallus]
Length = 1236
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 194/364 (53%), Gaps = 24/364 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W L+++G L+++L+ ++ P + L P ++ + SF + G+
Sbjct: 576 WPYVLLMRLGMYLLEILVHA--VKVPRNTLNPRLPSKLIPVLYHIYSFRS----SWQVGL 629
Query: 387 IECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQ 442
I+ P+ + + M+ +PML PP+ W + G + +MR GA Q
Sbjct: 630 IKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAIQH 689
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
++ + P+ L PV AL+ LG+ W++N+ +L +I ++ G ++ D+P P
Sbjct: 690 QQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDIPPPV 744
Query: 503 KPNTDDETEI-------KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
K K ++ KK+ +E HS R D KLS+A ++D+ F++P
Sbjct: 745 SEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK-VFWFP 803
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP PY NHLG+D+ R +L F EG PLG GL WLKIHL NL G K +
Sbjct: 804 HNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKKNA 862
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R+ + +++I DSAD PL GR+WW+ ++P+Q LA C+ +++A RSP P + ISH
Sbjct: 863 LQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFISH 922
Query: 676 IPVH 679
PVH
Sbjct: 923 FPVH 926
>gi|167524739|ref|XP_001746705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774975|gb|EDQ88601.1| predicted protein [Monosiga brevicollis MX1]
Length = 1253
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 200/375 (53%), Gaps = 46/375 (12%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP-DIRP--AFVHTLKSFTKEALKG- 381
PW L+ G L++++++T+ G P D +P AF H ++ L G
Sbjct: 168 PWPIPVLLACGTSLLEVVLQTS-------STGHLPNHDKKPVAAFYHMMQ------LDGV 214
Query: 382 RRYGVIECDPLV--RKGLEKTGRHMIIP--------YMPMLVPPLNWRGYNRGGHFFLPS 431
+R G I C LV R + + R +P +PM +PP W +G + PS
Sbjct: 215 KRVGYIRCHKLVLDRVSGQASDRGSCVPSKVAIDASQLPMTIPPRPWTSVRKGAYLICPS 274
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
+MRT Q + L VF A+ L +T W+VN ++L V+ ++ S G
Sbjct: 275 AIMRTGDWAFQHFALLSEATHNLARVFNAISALSATAWKVNGQVLRVVTELFHSED---G 331
Query: 492 LVDQEDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
D P + N + D+T+ K +KT KK ++E HS R D+ L+L VA + E+
Sbjct: 332 YDDLGIAPF--RVNYEVDKTDPKS----LKTHKKLSNEAHSLRSDLHLRLMVAHWL-GEK 384
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F+ PHNLDFRGRAY M PYL H+G+D+ RG+L F E PLG G WLK+HLAN+Y G
Sbjct: 385 QFWLPHNLDFRGRAYSMPPYLTHIGNDMARGLLTFAETKPLGADGWRWLKVHLANVY--G 442
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEG------RRWWLGAEDPFQCLATCINLSEAL 664
DKL + R F E++++++ SADRPL G + WWL E+P+Q LATC+ L+ A
Sbjct: 443 KDKLPMDERAKFAEDNMENVLSSADRPLAGLLEPGEKSWWLKGENPWQVLATCMELAAAY 502
Query: 665 RSPSPESTISHIPVH 679
RS +PE+ S PVH
Sbjct: 503 RSGNPEAYESGFPVH 517
>gi|354480822|ref|XP_003502602.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Cricetulus
griseus]
Length = 1202
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 29/370 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVH--TLKSFTKEALKG 381
+PW L+ +G +L ++L++ +Q P + + + P H + +S+
Sbjct: 533 QPWSLTVLLHLGKQLAEMLVQA--VQMPRNLSTPQASRHLIPVLYHVYSFRSY------- 583
Query: 382 RRYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-TH 437
R+ G+++ P K LE +I +PML PPL W + G + + +MR T
Sbjct: 584 RQIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKLMRATE 643
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQ 495
G Q + ++ +QL AL LG+ WRVN R+L ++ +++ GC L +
Sbjct: 644 GTTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLGVPPPR 703
Query: 496 EDVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
+ P LP + E++K ++ K E HS R + +LS+A+ +++
Sbjct: 704 SEAPQPAQLRLPPGATPLHKAELRK---ELSRCLKIAREMHSLRIEALYRLSLAQHLRNR 760
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
F+ PHN+DFRGR YP PY NHLGSDL R +LEF EG PLG GL W+KIHL NL G
Sbjct: 761 -VFWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL-TG 818
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
+ S R+ F + +++I DSAD P+ GR+WW+ A++P+Q LA CI ++ A+RSP
Sbjct: 819 LRKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSPDA 878
Query: 670 ESTISHIPVH 679
+ +SH+PVH
Sbjct: 879 AAYVSHLPVH 888
>gi|326934436|ref|XP_003213296.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Meleagris gallopavo]
Length = 1203
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 24/364 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W L+++G L+++L+ + P + L P ++ + SF + G+
Sbjct: 543 WPYVLLMRLGMYLLEILVHAVKV--PRNTLNPRLPSKLIPVLYHIYSFRS----SWQVGL 596
Query: 387 IECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQ 442
I+ P+ + + M+ +PML PP+ W + G + +MR GA Q
Sbjct: 597 IKPHPIFSQIVSDAAEAMLTFNSSAIPMLCPPVPWTSPHFGAFVLGDTKLMRYVDGAIQH 656
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
++ + P+ L PV AL+ LG+ W++N+ +L +I ++ G ++ D+P P
Sbjct: 657 QQLLDQCPQXNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDIPPPV 711
Query: 503 KPNTDDETEI-------KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
K K ++ KK+ +E HS R D KLS+A ++D+ F++P
Sbjct: 712 SEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK-VFWFP 770
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP PY NHLG+D+ R +L F EG PLG GL WLKIHL NL G K +
Sbjct: 771 HNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKKNA 829
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
+ R+ + +++I DSAD PL GR+WW+ ++P+Q LA C+ +++A RSP+P + +SH
Sbjct: 830 LQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPNPAAFVSH 889
Query: 676 IPVH 679
PVH
Sbjct: 890 FPVH 893
>gi|329663210|ref|NP_001192480.1| DNA-directed RNA polymerase, mitochondrial [Bos taurus]
Length = 1224
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 196/376 (52%), Gaps = 35/376 (9%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G +L ++L+ + P P + P H + +SF R
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRAVQM-PSSLAAPRGPSTLIPVLYHVYSFRSF-------R 600
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + E +I +PML PPL W + G P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
+Q + ++ P ++L AL LG+ WRVN R+L ++ ++ GC L
Sbjct: 661 TQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPT 720
Query: 497 DVP-------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
+ P LPE D ++ ++K A+ E S R D +LS+A
Sbjct: 721 EAPRPPEGRQTPKGCLLPEASPADKAEMRRELARRLKVAR----EMQSLRADALYRLSLA 776
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
+ +++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL
Sbjct: 777 QHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHL 835
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
NL G + S + R + + ++DI DSA+RP+ GR+WW+ A++P+Q LA C+ +++
Sbjct: 836 INL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQV 894
Query: 664 LRSPSPESTISHIPVH 679
+ SP P + ISH PVH
Sbjct: 895 VHSPDPTTYISHFPVH 910
>gi|296485392|tpg|DAA27507.1| TPA: CG4644-like [Bos taurus]
Length = 1224
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 196/376 (52%), Gaps = 35/376 (9%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G +L ++L+ + P P + P H + +SF R
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRAVQM-PSSLAAPRGPSTLIPVLYHVYSFRSF-------R 600
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + E +I +PML PPL W + G P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
+Q + ++ P ++L AL LG+ WRVN R+L ++ ++ GC L
Sbjct: 661 TQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPT 720
Query: 497 DVP-------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
+ P LPE D ++ ++K A+ E S R D +LS+A
Sbjct: 721 EAPRPPEGRQTPKGCLLPEASPADKAEMRRELARRLKVAR----EMQSLRADALYRLSLA 776
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
+ +++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL
Sbjct: 777 QHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHL 835
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
NL G + S + R + + ++DI DSA+RP+ GR+WW+ A++P+Q LA C+ +++
Sbjct: 836 INL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQV 894
Query: 664 LRSPSPESTISHIPVH 679
+ SP P + ISH PVH
Sbjct: 895 VHSPDPTTYISHFPVH 910
>gi|344243361|gb|EGV99464.1| DNA-directed RNA polymerase, mitochondrial [Cricetulus griseus]
Length = 1232
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 27/369 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+ +G +L ++L++ + P + + P H + +S+ R
Sbjct: 533 QPWSLTVLLHLGKQLAEMLVQAVQM-PRNLSTPQASRHLIPVLYHVYSFRSY-------R 584
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P K LE +I +PML PPL W + G + + +MR T G
Sbjct: 585 QIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKLMRATEG 644
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQE 496
Q + ++ +QL AL LG+ WRVN R+L ++ +++ GC L +
Sbjct: 645 TTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLGVPPPRS 704
Query: 497 DVP------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
+ P LP + E++K ++ K E HS R + +LS+A+ +++
Sbjct: 705 EAPQPAQLRLPPGATPLHKAELRK---ELSRCLKIAREMHSLRIEALYRLSLAQHLRNRV 761
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
F+ PHN+DFRGR YP PY NHLGSDL R +LEF EG PLG GL W+KIHL NL G
Sbjct: 762 -FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL-TGL 819
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
+ S R+ F + +++I DSAD P+ GR+WW+ A++P+Q LA CI ++ A+RSP
Sbjct: 820 RKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSPDAA 879
Query: 671 STISHIPVH 679
+ +SH+PVH
Sbjct: 880 AYVSHLPVH 888
>gi|456754161|gb|JAA74232.1| polymerase (RNA) mitochondrial (DNA directed) [Sus scrofa]
Length = 1219
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 25/371 (6%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW LV++G RL ++L++ + + DS I + V++ +SF R+
Sbjct: 547 QPWSLSVLVQLGKRLAEMLVQAVRMPSNLATPRDSNTLIPVLYHVYSFRSF-------RQ 599
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P R+ LE + +PML PPL W + G P+ +MR+ G
Sbjct: 600 IGILKPHPAFRQLLETAAEGTLTFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSVEGT 659
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP 499
+Q + ++ ++L AL LG+ W+VN +L ++ ++ + GC V +
Sbjct: 660 QQHQVLLERCRPAELHGALDALTQLGNCAWQVNGPVLDLVLELFNNKGCPHLGVPAPPLE 719
Query: 500 LPEKPNTDDE-----------TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD 548
P P T+ + + ++ K E HS R + +LS+A+ ++
Sbjct: 720 APRPPEGRQAPDACLQPNVPPTQKAELRRELARRLKMAREMHSLRTEALYRLSMAQHLRG 779
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA 608
F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL+WLKIHL NL
Sbjct: 780 R-IFWLPHNMDFRGRTYPFPPHFNHLGSDLARALLEFAQGRPLGPQGLNWLKIHLVNL-T 837
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
G S + R + ++DI DSADRP+ GR+WW+ A++P+Q LA C+ ++ A+R+P
Sbjct: 838 GLKKHESLQARRDLADELMEDILDSADRPMTGRKWWMEADEPWQTLACCMEIARAVRAPD 897
Query: 669 PESTISHIPVH 679
P + +SH PVH
Sbjct: 898 PTAYVSHFPVH 908
>gi|390342830|ref|XP_001198516.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 1480
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 6/275 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PP+ W G + + +MR+ GA Q + ++ TP +L P+ AL+ L +
Sbjct: 891 LPMLTPPIPWTSVRFGAYPLSSTKIMRSKDGAHQHLDLLEKTPPQELYPILDALNQLSTV 950
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDET---EIKKWKWKVKTAKK 524
W +NK IL + ++ + G A V Q P P E E+ + + A+K
Sbjct: 951 PWIINKPILDTVISVFRNSGSKALDVPQPASACPHPPRITSEVSREELAQIHRERAAARK 1010
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+E HS R D+ KLS+A K+++E F++PHN+DFRGR YP P+ NH G+D+ R +L
Sbjct: 1011 MQAEMHSLRMDMLYKLSIADKVRNE-IFWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLL 1069
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F G PLG+ G WLKIHL NL G + S E R+ + + L +I DSAD+PL+G +WW
Sbjct: 1070 FARGMPLGEEGFRWLKIHLVNL-TGHKKRCSVEERLQYAHDMLPEIMDSADKPLDGNKWW 1128
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+++ +Q LA+C+ +++A+RS P S ISH+P+H
Sbjct: 1129 QNSDEQWQTLASCMEVTKAIRSGDPTSYISHLPIH 1163
>gi|145499932|ref|XP_001435950.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403087|emb|CAK68553.1| unnamed protein product [Paramecium tetraurelia]
Length = 1035
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 160/576 (27%), Positives = 266/576 (46%), Gaps = 61/576 (10%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L RQ+ IE + E A +Q + D+ + A +L + + WF L + ++Q
Sbjct: 181 LFERQLIIEQVSNELALDRFQQVFDDLQKMSKAQHLFAAQKYIVEWFPKLCALVQQEQIQ 240
Query: 199 ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM------------TNAGEVRVVQA 246
+ + Y Y + ++ +A+I + +L+ + N ++RV +
Sbjct: 241 CFSDPNKEQQGYHQYITAIQSEKLAIIALSELMKEFIEAAVLFHEEKTTLNCYQIRVTRL 300
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATD--NNLEGDSEPLTNDPEKLIKEQEKLKKRVT- 303
A +IGE I + + K+ ++K+ D +E + P E++ ++E K+
Sbjct: 301 ANRIGEQIMKQHLYEEEQKNLRRKSKEDIQKMIEEGTVPQDQSEEEIQNQKELFYKQAVV 360
Query: 304 ---SLIKKQKLQQVRGIVKGHVDSKPWGQ----DALVKVGCRLIQLLMETAYIQPPVDQL 356
L+K Q+ + I V +GQ D ++G L+ L+++ +
Sbjct: 361 KAGKLLKTQQEKLRERIRNNRVYLAKYGQAMPKDIAAQIGMVLVHFLVDSI-------KF 413
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-------M 409
+ P V K ++ + + L L G H Y +
Sbjct: 414 RNENNFWVPVLVQGYKKVKQDI----EVAIFNVNQLFLHHL-SAGMHKDNSYFMHLDRAL 468
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PM+ PP W GG++ P+ ++R Q E K R+ L+ ++ LD + W
Sbjct: 469 PMIYPPAKWMDTQIGGYYLKPTNLIRIQDQSLQEEAAK---RANLQNLYDILDNISKVAW 525
Query: 470 RVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT----DDETEIKKWKWKVKTAKKQ 525
RVN ++L + ++W GG +A +VP + T E K ++ K + K
Sbjct: 526 RVNNKVLNIAMQVWEQGGGIA------EVPKRQHDKTYVFEHQIKECKSYEEKYQLLKMI 579
Query: 526 NSEK--HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
S++ +S +CD LKL VA + Y+PHN+DFRGR YP+ P+LNH+G D+ RG+L
Sbjct: 580 QSQRDLYSLQCDFTLKLGVALAFNGCQKIYFPHNMDFRGRLYPIPPHLNHMGPDIARGLL 639
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
EF EG LGK+GL WLKIHLAN G DKLS E R A+ + ++D I A+ P++ +
Sbjct: 640 EFSEGKKLGKSGLRWLKIHLAN--KMGKDKLSMEDREAYVDQNVDSIIKCAEDPIKYQD- 696
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
W ED +Q LA + A++SP+PE SH+ VH
Sbjct: 697 WAQLEDAWQSLAAMFDYVAAIKSPNPEEYESHLHVH 732
>gi|390478301|ref|XP_003735468.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Callithrix jacchus]
Length = 1294
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 14/280 (5%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PPL W + G P+ +MR G + ++ P + L L LG+
Sbjct: 705 VPMLCPPLPWTSPHTGAFLLNPTKLMRAVDGTMHHQRLLENCPPAALHGALDTLTQLGNC 764
Query: 468 KWRVNKRILGVIDRMWASGGCL--------AGLVDQEDVPLPEKPNTDDETEIKKWKWKV 519
WRVN R+L ++ ++ GC + + + PLP D+ E+++ ++
Sbjct: 765 AWRVNGRVLDLVLELFQDKGCPKLSVPAPPSEVAAPHEAPLPSSTGLVDKAELRR---EL 821
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
+ K++ E HS R D +LS+A +++ F+ PHN+DFRGR YP P+ NHLG+DL
Sbjct: 822 ARSLKESREMHSLRADALYRLSLADHLRNCV-FWLPHNMDFRGRTYPCPPHFNHLGNDLA 880
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +LEF +G PLG GL WLKIH+ NL G + + R AF E +DDI DSAD P+
Sbjct: 881 RALLEFAQGCPLGPHGLDWLKIHVVNL-TGLKKREPLQVRHAFAEEVMDDILDSADNPMT 939
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WW+G+E+P+Q LA C+ +++A+R+ P + ISH+PVH
Sbjct: 940 GRKWWMGSEEPWQTLACCMEIAKAVRTSDPAAYISHLPVH 979
>gi|89029825|gb|ABD59451.1| mitochondrial single-subunit RNA polymerase [Acanthamoeba
castellanii]
Length = 512
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 143/213 (67%), Gaps = 5/213 (2%)
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIK-KWKWKVKTAKKQN 526
+ +N R+ VI W +GG +A L + ++P E P + + E+K K+ + K AK N
Sbjct: 4 FSINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIAN 63
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
HS RCD+ KL VA++ +D FYYPHN+DFRGR YP+ P+LNHLG DLCRG+L F
Sbjct: 64 YNLHSLRCDVTYKLQVAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFA 122
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
EG PLG++GL WLK+HLAN++ G DK+++E RV F EN+++ I DSA PL G+RWWL
Sbjct: 123 EGKPLGESGLRWLKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLK 180
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A+ P+QCLA I L A S PE+ +S +P+H
Sbjct: 181 ADKPWQCLAASIELINAYNSGQPETYVSTLPIH 213
>gi|348550224|ref|XP_003460932.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Cavia porcellus]
Length = 1267
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 158/277 (57%), Gaps = 8/277 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET-IKMTPRSQLEPVFQALDTLGST 467
MPML PPL W GG P +M + G + ++ P +QL +AL LG+
Sbjct: 680 MPMLCPPLPWSSSQAGGFLLSPIKLMGSLGGPSSTSSRLESCPPAQLHGALEALTQLGNC 739
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP----NTDDETEIK-KWKWKVKTA 522
WRVN R+L ++ ++ GC V P P D + +K + + +V
Sbjct: 740 AWRVNGRLLDLVLEVFLDKGCCRLGVPPPVSEAPRPPLDQLAPDTQPHLKAQLRQEVARC 799
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
K E H R + +LS+A+ ++D F+ PHN+DFRGR YP P+ NHLGSDL R +
Sbjct: 800 LKVAREMHGLRQEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARAL 858
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
LEF +G PLG GL WLKIHL NL G + R++F + +DDI DSA+RP+ GR+
Sbjct: 859 LEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLHARLSFADAMMDDILDSAERPMTGRK 917
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW+ A+DP+Q LA C+ ++ A++SP P + +SH+PVH
Sbjct: 918 WWMEADDPWQTLACCMEVARAVQSPDPAAYVSHLPVH 954
>gi|351714005|gb|EHB16924.1| DNA-directed RNA polymerase, mitochondrial [Heterocephalus glaber]
Length = 1213
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%)
Query: 382 RRYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
R+ G + P + L+ ++I MPML PPL W GG P+ +MR+
Sbjct: 600 RQIGFLRPHPAFIQLLDDAAEPLMIFEATDMPMLCPPLPWASSQSGGFLLSPTKLMRSVD 659
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV---- 493
G+ Q + + P ++L L LG+ WRVN R+L ++ ++ + GC V
Sbjct: 660 GSLQHQNLLDSWPPTELHGALDTLTQLGNCAWRVNGRVLDLVLEIFRNKGCARLGVPPPA 719
Query: 494 -DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
+ PL + P + + +V + K E H R + +L A+ ++ + F
Sbjct: 720 SEAPRPPLEDLPPNASPHRKAELRQEVASCLKIAREMHGLRREALYRL--AQHLR-HQVF 776
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
+ PHN+DFRGR+YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 777 WLPHNMDFRGRSYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLINL-TGVKK 835
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
+ S R+AF +DDI DSAD+P+ GR+WW+ AEDP+Q LA C+ ++ A+RSP P +
Sbjct: 836 RESLRVRLAFANTVMDDILDSADQPMTGRKWWMEAEDPWQTLACCMEVAGAVRSPDPAAY 895
Query: 673 ISHIPVH 679
+SH+P+H
Sbjct: 896 VSHLPIH 902
>gi|148699722|gb|EDL31669.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_d [Mus
musculus]
Length = 1144
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/277 (40%), Positives = 163/277 (58%), Gaps = 8/277 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PPL W + G + + +MR T G Q + ++ P +QL AL LG+
Sbjct: 554 VPMLCPPLPWTSLHSGAYLLSSTKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNC 613
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVD--QEDVPLPEKPNTD-DETEIKKWKWKVKTAK- 523
WRVN +L ++ +++ GC+ V + + P P + T + K + + + A+
Sbjct: 614 AWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELRKELARC 673
Query: 524 -KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
K E HS R + +LS+A+ ++ F+ PHN+DFRGR YP P+ NHLGSDL R +
Sbjct: 674 LKVAREMHSLRSEALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARAL 732
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
LEF EG PLG GL WLKIHL NL G S R+AF + +++I DSAD PL GR+
Sbjct: 733 LEFAEGRPLGPRGLDWLKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRK 791
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW+ A++P+Q LA C+ ++ A+RSP P + ISH+PVH
Sbjct: 792 WWMEADEPWQTLACCMEVAHAVRSPDPAAYISHLPVH 828
>gi|121483706|gb|ABM54185.1| mitochondrial RNA polymerase [Paracentrotus lividus]
Length = 1421
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 194/366 (53%), Gaps = 21/366 (5%)
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKG 381
+K W L+ +G L L++ I + I PA H T +SF
Sbjct: 750 AKTWPTGLLIGIGTLLADLMLREIKIDANMHNNKLEKQWI-PALYHMYTYRSF------- 801
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
+ G I+ P + L +T + + + +PM+ PP+ W G + + +MR+
Sbjct: 802 KHVGFIKPHPTL-VDLFQTAKDPNLEFDTNMLPMMTPPIPWTSVKFGAYPLSSTKIMRSK 860
Query: 438 -GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ- 495
GA Q +E ++ TP +L P+ AL+ L S W +N IL + ++ + G V Q
Sbjct: 861 DGANQHQEVLEKTPSQELYPILDALNQLSSVPWIINNPILDTVISVFRNNGSKELDVAQP 920
Query: 496 -EDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
P P + +D E+ + + A+K +E HS R D+ KLS+A K++++ F+
Sbjct: 921 ASACPYPPRITSDVSREELAQIHRERAAARKMQAEMHSLRMDMLYKLSIADKVRND-VFW 979
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+PHN+DFRGR YP P+ NH G+D+ R +L F G PLG+ G WLKIHL NL G +
Sbjct: 980 FPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGRPLGEEGFRWLKIHLVNL-TGHKKR 1038
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S R+ + + + +I DSAD PL+G +WW GA++ +Q LA CI +++A+RS P + I
Sbjct: 1039 CSVAERLQYAHDMMPEIMDSADNPLDGNKWWQGADEQWQTLAACIEVTKAIRSGDPTTYI 1098
Query: 674 SHIPVH 679
SH+P+H
Sbjct: 1099 SHLPIH 1104
>gi|449531519|ref|XP_004172733.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like,
partial [Cucumis sativus]
Length = 234
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/239 (50%), Positives = 156/239 (65%), Gaps = 16/239 (6%)
Query: 1 MWRNLARQSSTRNFK----FSPS---KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRN+ + +++R K FS S KV++ FL +I S + L++ C G R
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
FL QK SNF S P +GVL ++ YA+AAEA E +LSGSEE+QE+++ N
Sbjct: 61 FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
++ D + KQPK G KY ML++RQIKIETEAWE+AAKEYQDL+AD+CE
Sbjct: 121 KQ-----DKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICE 175
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
QKLAPNLPY+KSLFLGWF+PLRDAI +Q + + K ++A YF+ LPADMMAVITMH
Sbjct: 176 QKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVITMH 234
>gi|355712786|gb|AES04465.1| polymerase mitochondrial [Mustela putorius furo]
Length = 375
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 159/279 (56%), Gaps = 14/279 (5%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
PML PPL W + G P+ +MR+ G Q + + P + L AL LG+
Sbjct: 1 PMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTVQHQRLLDSCPPADLHGALDALTQLGNCA 60
Query: 469 WRVNKRILGVIDRMWASGGC--LAGLVDQEDVP------LPEKPNTDDETEIKKWKWKVK 520
WRVN R+L ++ ++ + GC L + P LP + + E+++ ++
Sbjct: 61 WRVNGRVLDLVLELFTAKGCPHLGVPAPASEAPRPPDGRLPPGASPAQKAEVRR---ELA 117
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
K E HS R D +LS+A+ ++ F+ PHN+DFRGR YP P+ +HLGSDL R
Sbjct: 118 RCLKVAREMHSLRSDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFHHLGSDLAR 176
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+LEF +G PLG GL WLK+HL NL G + S + R+AF + + DI DSADRP+ G
Sbjct: 177 ALLEFAQGRPLGARGLDWLKVHLVNL-TGLKKRESLQARLAFADEVMKDILDSADRPMTG 235
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
R+WW+ ++P+Q LA C+ ++ A+R+P P + +SH PVH
Sbjct: 236 RKWWMQVDEPWQALACCMEIARAVRAPDPAAYVSHFPVH 274
>gi|91088063|ref|XP_967600.1| PREDICTED: similar to CG4644 CG4644-PA, partial [Tribolium
castaneum]
Length = 1176
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 166/281 (59%), Gaps = 18/281 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PM PP+ W + GG+ +P V+R A Q++ + + QL P AL+ L +
Sbjct: 591 LPMFCPPVPWTCVDNGGYLIVPCEVVRLPPQATSQKQRLYQSEVQQLYPPLDALNQLAAV 650
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP----EKP-----NTDDETEIKKWKWK 518
W+VN +L VI ++ +GG + DVP P +P + D + K ++ K
Sbjct: 651 AWKVNTDVLDVILEVFNNGGSA-----KLDVPEPPTALARPQAITNDMDKAQKFKLFRQK 705
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
++ +K+ +E +S CD +LS+A + + F+ PHN+DFRGR YP+ P+LNHLGSDL
Sbjct: 706 LQYRRKK-AEMYSLWCDCLYRLSLANHFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSDL 763
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
R +L F E PLG GL+WLK+HL NL G + S R+A+ + +DDI DSAD PL
Sbjct: 764 ARSMLVFAESRPLGPDGLNWLKLHLINL-TGLKKRDSITDRLAYADTIMDDILDSADSPL 822
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WW +E+P+Q LA CI +++A RS +PE+ SH PVH
Sbjct: 823 TGRQWWAESEEPWQTLACCIEIAKATRSGNPETYRSHFPVH 863
>gi|270012086|gb|EFA08534.1| hypothetical protein TcasGA2_TC006188 [Tribolium castaneum]
Length = 1258
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 166/281 (59%), Gaps = 18/281 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PM PP+ W + GG+ +P V+R A Q++ + + QL P AL+ L +
Sbjct: 673 LPMFCPPVPWTCVDNGGYLIVPCEVVRLPPQATSQKQRLYQSEVQQLYPPLDALNQLAAV 732
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP----EKP-----NTDDETEIKKWKWK 518
W+VN +L VI ++ +GG + DVP P +P + D + K ++ K
Sbjct: 733 AWKVNTDVLDVILEVFNNGGSA-----KLDVPEPPTALARPQAITNDMDKAQKFKLFRQK 787
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
++ +K+ +E +S CD +LS+A + + F+ PHN+DFRGR YP+ P+LNHLGSDL
Sbjct: 788 LQYRRKK-AEMYSLWCDCLYRLSLANHFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSDL 845
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
R +L F E PLG GL+WLK+HL NL G + S R+A+ + +DDI DSAD PL
Sbjct: 846 ARSMLVFAESRPLGPDGLNWLKLHLINL-TGLKKRDSITDRLAYADTIMDDILDSADSPL 904
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WW +E+P+Q LA CI +++A RS +PE+ SH PVH
Sbjct: 905 TGRQWWAESEEPWQTLACCIEIAKATRSGNPETYRSHFPVH 945
>gi|194759172|ref|XP_001961823.1| GF14737 [Drosophila ananassae]
gi|190615520|gb|EDV31044.1| GF14737 [Drosophila ananassae]
Length = 1362
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 174/612 (28%), Positives = 280/612 (45%), Gaps = 70/612 (11%)
Query: 103 ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----QAA 157
EL++ NE L S D G + L R Q+++E + + +
Sbjct: 468 ELLNHLNEH----LTSKKEPDYAIMNSKYGYTKEQLEQLARDQLQVELDGCITIKSIEKS 523
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTYAP 212
KE+ + A +C +KL L W + + AI +D T Q ++K +M Y
Sbjct: 524 KEFAN--AKLCREKL-------NDLEQTWRKQISAAIVRDLNTLRVQVRFKPHGYMNYYT 574
Query: 213 YFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
Y + I + +L L + V Q ++G+ ++ +I+ KK+N
Sbjct: 575 YLKTMDTSHFVDILIKELYKLAAGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KKQN 629
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDA 331
T + G+ D K Q+ ++ L+ +Q+ G + PW +
Sbjct: 630 GTLEKI-GEIYSSYCDIWDSGKTQDNTRQAWQRLVHEQR---TSGPSMDQPEV-PWPSNV 684
Query: 332 LVKVGCRLIQLLMETAYIQPPV------DQLGDSPPDIRPAFVHTLKS---FTKEALKGR 382
L VG L +LM I + + P ++ PAF ++ KE +K
Sbjct: 685 LTGVGRFLYNILMRDIKIDSHLMRTKSKSKTASQPQNLLPAFYTLFRNQGRLVKEEVKPH 744
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
P++ + L + R + + +PML PP W + GG+ S ++R H
Sbjct: 745 --------PVLARLL-RASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPH 795
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
A QQ E I+ + QL P +L+ L S WRVN ++L VI +++ +GG V Q
Sbjct: 796 QAVQQWERIRASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLDVPQPP 855
Query: 498 VPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
L E N + K+++ K+ ++Q +E +S CD +LS+A+ +
Sbjct: 856 SSLPPLSSLPPKNAEGSNVSNADRAKQFRDKLVHRRRQ-AEMYSLWCDALYRLSLAQHFR 914
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+H NL
Sbjct: 915 DK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL- 972
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++ RSP
Sbjct: 973 TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIANVHRSP 1032
Query: 668 SPESTISHIPVH 679
P + +S P+H
Sbjct: 1033 DPAAYLSRFPIH 1044
>gi|195575683|ref|XP_002077706.1| GD22928 [Drosophila simulans]
gi|194189715|gb|EDX03291.1| GD22928 [Drosophila simulans]
Length = 1369
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 180/617 (29%), Positives = 287/617 (46%), Gaps = 74/617 (11%)
Query: 103 ELIDQFNEKGVSIL--DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETE------AWE 154
EL+D NE + ++ + D G TA+ L R Q++IE + ++E
Sbjct: 469 ELLDHLNEHILPVVAKEEPGKADYAIMNSKRGYTTAQLEQLAREQLRIELDGSITIKSFE 528
Query: 155 QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMT 209
++ KE+ + ++ C ++L + L W + + AI +D T AQ ++K M
Sbjct: 529 KS-KEFAN--SEKCRERL-------RELEDTWRKQILAAIVRDLNTLRAQVRFKPHGFMN 578
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
Y Y L A A I + +L L + V Q ++G+ ++ +I+ K
Sbjct: 579 YYTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----K 633
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
K N T LE E ++ E Q+ ++ L+ +Q+ + P
Sbjct: 634 KHNGT---LEKIGEIYSSYCELWDSGMSQDNTRQAWQRLVHEQR----ESGPSMDLPEVP 686
Query: 327 WGQDALVKVGCRLIQLLMETAYI------QPPVDQLGDSPPDIRPAFVHTLKS---FTKE 377
W + L VG L +LM I Q + P ++ PAF ++ F KE
Sbjct: 687 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKE 746
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYV 433
+K P++ + L + R + + +PML PP W + GG+ S +
Sbjct: 747 EVKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 797
Query: 434 MRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL 492
+R H A QQ + I + QL P +L+ L S WRVN ++L VI +++ +GG
Sbjct: 798 IRLPHQAIQQWDRIMASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLD 857
Query: 493 VDQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSV 542
V Q L E T K+++ K+ +KQ +E +S CD +LS+
Sbjct: 858 VPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQ-AEMYSLWCDALYRLSL 916
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIH 602
A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+H
Sbjct: 917 AQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 975
Query: 603 LANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++
Sbjct: 976 CINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIAN 1034
Query: 663 ALRSPSPESTISHIPVH 679
R P P + +S P+H
Sbjct: 1035 VHRCPDPAAYLSRFPIH 1051
>gi|359817571|gb|AEV66615.1| mitochondrial RNA polymerase [Oxytricha trifallax]
gi|403362099|gb|EJY80764.1| DNA-dependent RNA polymerase family protein [Oxytricha trifallax]
Length = 1305
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 169/577 (29%), Positives = 278/577 (48%), Gaps = 77/577 (13%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L +RQ+KIE ++E + +Y++ L + + L L W L +IA+ Q
Sbjct: 471 LFQRQLKIEELSFELSQNKYKNQLDSLIKIGRGDQLAVSHRYILSWMRLLETSIAEQQKI 530
Query: 201 AQDKW----KHMTYAPYFNNLPADMMA-VITMHKLVGLLMTNAGEVR------------- 242
+ K+ Y +P++ +A + +H + L ++R
Sbjct: 531 FIKRGNLDPKNSKIGYYLIQMPSEKIASLCVLHLMKHLFKQFIHDIRQFDDEDFTEKIEQ 590
Query: 243 -------VVQAACQIGEAIENEAR--IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
+Q ++G+ E E + + + KS KK + ++ L+ D E D
Sbjct: 591 NHEIKIPAIQLFDELGKLFEKELKNTLMTGKKSQKKPDDEEDILQEDMEQEIGD------ 644
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV 353
E+ L K+ I K L + I GH+ +D +K+G L L+ + +
Sbjct: 645 ERNALNKK----IAKHMLMEDNFI--GHL-----PRDVQLKIGAFLTNLMCKNLKYK--- 690
Query: 354 DQLGD-SPPDIRPAFV-HTLKSFTKEALKGRRY---GVIECDPL--VRKGLEKTGRHMII 406
+G+ S ++P + K + + R + V E D + + LE++
Sbjct: 691 --IGNKSYLLLKPQVLKQQEKKYLGYIIFNRSFIETFVGELDKIHDLSLQLERS------ 742
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR---QQRETIKMTPRSQLEPVFQALDT 463
+PM+ P W+ + GG+ Y+ +T A+ +E K R L + Q LD
Sbjct: 743 --LPMIYQPAPWKNFTFGGY-----YLKQTKMAKVIPNFKEAQKYLQRVDLTNMCQVLDI 795
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LGS KWR+N+RIL +I+ +W+ GG L G V + P ET ++ K K+
Sbjct: 796 LGSVKWRINRRILEIIEYVWSIGGGL-GEVPKRFNDRQITPEMIKETNFRE-KLKLLKEH 853
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
++N E H+ RC+ L+LS+A+ K Y+PHN+DFRGR YP+ P+LNH+G+D+ RG+L
Sbjct: 854 QKNRETHALRCEFLLRLSIAQSFKHVNQIYFPHNMDFRGRVYPIPPHLNHMGADVNRGLL 913
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+F EG PLGK GL WLK+H++N G DKL R A+ E+ +D I AD P +
Sbjct: 914 QFAEGQPLGKDGLFWLKVHVSN--KIGKDKLPIVDRAAYAESEMDMIHRCADDP-KNNLD 970
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
WL +++P+Q L+ I LS+A+R +PE IS+ VH+
Sbjct: 971 WLQSDNPWQTLSAMIELSQAVRCKNPEEYISYQHVHV 1007
>gi|403309070|ref|XP_003944953.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 1233
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 158/280 (56%), Gaps = 14/280 (5%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PPL W + G P+ +MR G + ++ P + L L LG+
Sbjct: 644 VPMLCPPLPWTSPHTGAFLLSPTKLMRAVDGTMHHQRLLERCPPAALHGALDTLTQLGNC 703
Query: 468 KWRVNKRILGVIDRMWASGGCL--------AGLVDQEDVPLPEKPNTDDETEIKKWKWKV 519
WRVN R+L ++ ++ GC + + + LP D+ E+++ ++
Sbjct: 704 AWRVNGRVLDLVLELFQEEGCPKLGVPARPSEVAAPHEAALPSSTGLADKAELRR---EL 760
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
K+ E HS R + +LS+A+ +++ F+ PHN+DFRGR YP P+ NHLG+DL
Sbjct: 761 ARCLKEAREMHSLRTEALYRLSLAQHLRNRI-FWLPHNMDFRGRTYPCPPHFNHLGNDLA 819
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +LEF +G PLG GL WLKIH+ NL G + + R AF E + DI DSAD P+
Sbjct: 820 RALLEFAQGRPLGPHGLDWLKIHVVNL-TGLKKREPLQARRAFAEEVMGDILDSADHPMT 878
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WW+ +E+P+Q LA C+ +++A+R+ P + +SH+PVH
Sbjct: 879 GRKWWMDSEEPWQTLACCMEIAKAVRTSDPAAYVSHLPVH 918
>gi|326437615|gb|EGD83185.1| single-subunit RNA polymerase [Salpingoeca sp. ATCC 50818]
Length = 1301
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 210/414 (50%), Gaps = 31/414 (7%)
Query: 289 EKLIKEQEKLKKRVTSLIKKQKLQQVR---GIVKGHVDS--KPWGQDALVKVGCRLIQLL 343
+++ ++E++KK S + +Q +++ G+ + DS W L VG +I L+
Sbjct: 567 HQIMSDREQMKKHSPSKLWRQLMKEYSIESGVSVPNEDSGLAFWTPRMLGAVGGEMIDLV 626
Query: 344 METAYIQPPVDQLGDSPPDIRPAFVHTL-----KSF----TKEALKGRRYGVIECDPLVR 394
+ A + + D PAF HT K F T + ++ Y + + +
Sbjct: 627 LRKATLSAITGRAEDKE---LPAFYHTYEFEGTKRFGFIRTHDTVQDYSYNFVATNAQLG 683
Query: 395 KGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
K + + R + +PMLV P W G G P +MRT + + L
Sbjct: 684 KNVFR--RSIDAVNLPMLVLPKPWTGVRTGASLVSPVTIMRTFDSHFHHYALLAETTHLL 741
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV----PLPEKPNTDDET 510
+ +F AL L S WRVN ++ V+ + + + L + P+P +
Sbjct: 742 DDMFDALTYLSSMAWRVNTKVFDVVRAAFEAEVGVEELAIAPHIIQPPPVPARTADMSAE 801
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
+ K++ +V +KQ+SE +SQR + LKL VA+ ++D++ FY PHNLDFRGRAY + PY
Sbjct: 802 DKAKYQRQVMEHRKQSSEAYSQRTTLHLKLMVAQALRDQD-FYLPHNLDFRGRAYTIAPY 860
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
L H+G DL RG+L F E PLGK GL WLKIHLAN+Y G DK S + R F E+++ +
Sbjct: 861 LTHIGDDLSRGLLVFAEKKPLGKNGLRWLKIHLANVY--GNDKCSLDDREKFAEDNMHHV 918
Query: 631 FDSADRPL----EGR-RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
++ PL +G WWL ++P+Q LA C L +A+ +P+PE S PVH
Sbjct: 919 EETVRNPLRFLEDGEPMWWLQGDNPWQVLAVCNELHDAMCAPNPEEFESGFPVH 972
>gi|196004815|ref|XP_002112274.1| hypothetical protein TRIADDRAFT_25308 [Trichoplax adhaerens]
gi|190584315|gb|EDV24384.1| hypothetical protein TRIADDRAFT_25308, partial [Trichoplax
adhaerens]
Length = 607
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 184/320 (57%), Gaps = 17/320 (5%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGYNR 423
PAF H F K+ R+ G I+ P + K G+ ++ +PMLVP W ++
Sbjct: 35 PAFYHVY-VFQKQ----RQVGFIKPHP----NVMKLGKFLMETSMLPMLVPSRPWLCHHD 85
Query: 424 GGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILG-VIDRM 482
GG+ P+ +MR ++ + +L ++ +++ LGS W+VNKR+L I+
Sbjct: 86 GGYVATPAPIMRYREDCFDQDVLLAKSSRKLRSIYDSINYLGSCPWKVNKRVLDKCIECF 145
Query: 483 WASGGCLAGLVDQEDVPLPEKP-NTDDETEIKK--WKWKVKTAKKQNSEKHSQRCDIELK 539
+G + + D +P+P P + D E + K+ + + + AKKQ E HS R D+ K
Sbjct: 146 NETGSDILDIPDPRLIPMPPYPVDPDIEPQEKRRIIELRRQVAKKQR-EHHSLRMDVLYK 204
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
LSVA+ +++ F+ PHN+DFRGR YP+ P+L+H+G+DL R ++ F G PLG G W+
Sbjct: 205 LSVAKHFEND-IFWLPHNMDFRGRVYPIPPHLSHVGNDLSRSLMLFAIGRPLGTEGFDWI 263
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
K+HLAN++ G + K S R+ FTE+ ++I DSAD P G +WW E P+Q LATC+
Sbjct: 264 KVHLANVH-GQMSKASLTDRINFTESLKNEILDSADNPFTGDKWWQTGEHPWQTLATCME 322
Query: 660 LSEALRSPSPESTISHIPVH 679
L++ R +PE IS+ PVH
Sbjct: 323 LADVWRCDNPEQYISYFPVH 342
>gi|348679853|gb|EGZ19669.1| hypothetical protein PHYSODRAFT_354222 [Phytophthora sojae]
Length = 576
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Query: 451 RSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDET 510
R +++ + +AL+ + W +NK +L V+ ++W GG L + DVPLP+ + +
Sbjct: 6 RGKMDGILKALNLMAEVPWVINKEVLEVVLKIWEDGGNFGDLPTRTDVPLPDPDSPEFAD 65
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
+ + V+ ++ N E HS RCD KL VA + KDE YYP+N+DFRGR YP+ P
Sbjct: 66 DPALYHRNVRKIEQLNREFHSLRCDTLYKLQVAEEFKDEPELYYPYNMDFRGRVYPIPPN 125
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNHLGSDL R +L F + PLG+ GL W+KIHLAN++ GVDK S++ RV F + +LD +
Sbjct: 126 LNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--GVDKCSFDERVEFADANLDKV 183
Query: 631 FDSADRPL-EGR-RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
SA PL EG WW GA+ PF L C L A+ SP P +S+IP+H
Sbjct: 184 VASASNPLGEGDCAWWKGADYPFLALGVCFELRRAIESPDPTKYMSNIPIH 234
>gi|195437825|ref|XP_002066840.1| GK24692 [Drosophila willistoni]
gi|194162925|gb|EDW77826.1| GK24692 [Drosophila willistoni]
Length = 1353
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 177/616 (28%), Positives = 283/616 (45%), Gaps = 82/616 (13%)
Query: 103 ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----QAA 157
EL++ NE S L + D +G + L R Q+K+E + + +
Sbjct: 463 ELLNHLNE---STLKGENKPDYAIMNPKSGYTKDQLEQLAREQLKVELDGCITIKSIEKS 519
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTYAP 212
KE+ + A+ C ++L K L W + + AI +D T AQ ++K +M Y
Sbjct: 520 KEFAN--AEKCRERL-------KELEQNWRKQISVAIVRDMNTLRAQVRFKPHGYMNYYT 570
Query: 213 YFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
Y L I + +L L + V Q ++G+ ++ +I+ KK N
Sbjct: 571 YLKVLDTSHYTDIVIKELYKLAEGSETFSPTVGQLYKELGQKVQRRYQIEQ-----KKHN 625
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD--SKPWGQ 329
T + GD D + Q+ ++ L+ Q R I +D PW
Sbjct: 626 GTLEKI-GDIYSSYCDIWDSGRTQDNTRQIWQRLVHDQ-----REIGGPSMDLPEIPWPS 679
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGD--SPPDIRPAFVHTLKS---FTKEALKGRRY 384
+ L VG L +LM I + + + S ++ PAF ++ KE +K
Sbjct: 680 NVLTGVGRFLYNILMRDIKIDSHIMRQNNRQSTQNLMPAFYTLFRNQGRLVKEEVKPH-- 737
Query: 385 GVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
P++ + L + R + + +PML PP W + GG+ S ++R H A
Sbjct: 738 ------PVLSRLL-RASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQA 790
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG------------ 487
QQ E I T Q+ P +L+ L S WRVN ++L VI ++ +GG
Sbjct: 791 VQQWERINATNPEQIYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGDAKLDVPQPPSA 850
Query: 488 ----CLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
+D +D+ N D K+++ K+ +KQ +E +S CD +LS+A
Sbjct: 851 LPPLPANQAIDTKDIS-----NAD---RAKQFRDKLGHRRKQ-AEMYSLWCDALYRLSLA 901
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+H
Sbjct: 902 QHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSILIFDQAQPLGLDGFSWLKLHC 960
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
NL G + S R+ + E + +I DSAD PL G WW +++P+Q LA C+ +++
Sbjct: 961 INL-TGMKKRDSVRERLLYAEEIMPEILDSADNPLTGNMWWSKSDEPWQTLACCMEIAKV 1019
Query: 664 LRSPSPESTISHIPVH 679
RSP P + +S P+H
Sbjct: 1020 QRSPDPAAYLSRFPIH 1035
>gi|391337781|ref|XP_003743243.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1126
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 28/370 (7%)
Query: 320 GHVDSKPWGQDALVKVG----CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF- 374
G++ PW + V VG L QL ++ ++P D + +H L S
Sbjct: 471 GNLQENPWTRSTQVSVGRFLYSMLRQLKVDVNIMKPNCD---------KRKLIHALYSVY 521
Query: 375 -TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF--LPS 431
T A K E + E H +PML PP W + +P
Sbjct: 522 RTNSARKHEELKAHEVLNTLYSKAEIENLHFDATSLPMLCPPKPWTRPEDTPYMISGVPL 581
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
+ + + +Q I+ +P + P AL+ LG T W+VN IL V+ ++ G +
Sbjct: 582 IRIPSEFSNKQMSAIRESPPENIYPALDALNALGRTPWKVNNPILDVLTTVFLGEGDM-- 639
Query: 492 LVDQEDVPLPEKPN--TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
++ +P+KP+ T E K + + ++++ +EK++ CD KLS+A K++
Sbjct: 640 -----ELSVPKKPSNMTKPEPSAHKARVQATLSERKKAEKYALWCDTLHKLSIAHHFKND 694
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
F++PHN+DF GRA+P +HLG DL RG+L F EG PLG+ GL WLK+HL L G
Sbjct: 695 V-FFFPHNMDFCGRAHPCPAQFHHLGDDLIRGLLLFAEGKPLGERGLWWLKLHLMKL-TG 752
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
++ S E RVA+ + +DDI DSA PL GR+WW +EDP+Q LA C ++ AL SP P
Sbjct: 753 FSNERSAEERVAYADGIMDDILDSARNPLNGRKWWQTSEDPWQTLAACKEIANALASPKP 812
Query: 670 ESTISHIPVH 679
E I H+P+H
Sbjct: 813 EEYICHLPIH 822
>gi|20129143|ref|NP_608565.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|442625108|ref|NP_001259853.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
gi|7296127|gb|AAF51421.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|40882523|gb|AAR96173.1| LD36213p [Drosophila melanogaster]
gi|440213109|gb|AGB92390.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
Length = 1369
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 183/621 (29%), Positives = 285/621 (45%), Gaps = 82/621 (13%)
Query: 103 ELIDQFNEKGVSILDSSSMLDKQPKKKG-------TGMGTAKYYMLKRRQIKIE-----T 150
EL+D NE + + K+P K G A+ L R Q+KIE T
Sbjct: 469 ELLDHLNEHVIPV-----GAKKEPGKADYAIMNSKRGYTAAQLEQLAREQLKIELDGSIT 523
Query: 151 EAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK-- 206
+ +KE+ + ++ C + L K L W + + AI +D T AQ ++K
Sbjct: 524 IKSIEKSKEFAN--SEKCRELL-------KELEDTWRKQISAAIVRDLNTLRAQVRFKPH 574
Query: 207 -HMTYAPYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFF 264
M Y Y L A A I + +L L + V Q ++G+ ++ +I+
Sbjct: 575 GFMNYYTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-- 632
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
KK N T LE E ++ E Q+ ++ L+ +Q+ +
Sbjct: 633 ---KKHNGT---LEKIGEIYSSYCELWGSGMSQDNTRQAWQRLVYEQR----ESGPSMDL 682
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYI------QPPVDQLGDSPPDIRPAFVHTLKS--- 373
PW + L VG L +LM I Q + P ++ PAF ++
Sbjct: 683 LEVPWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGR 742
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFL 429
F KE +K P++ + L + R + + +PML PP W + GG+
Sbjct: 743 FVKEEVKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLN 793
Query: 430 PSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
+ ++R H A QQ + I + L P +L+ L S WRVN ++L VI +++ +GG
Sbjct: 794 KTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGD 853
Query: 489 LAGLVDQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
+ V Q L E T E K+++ K+ +KQ +E +S CD
Sbjct: 854 VKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQ-AEMYSLWCDALY 912
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
+LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG GL W
Sbjct: 913 RLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSW 971
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LK+H NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+
Sbjct: 972 LKLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCM 1030
Query: 659 NLSEALRSPSPESTISHIPVH 679
++ R P P + +S P+H
Sbjct: 1031 EIANVHRCPDPAAYLSRFPIH 1051
>gi|449491870|ref|XP_002193465.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Taeniopygia
guttata]
Length = 1263
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 161/279 (57%), Gaps = 15/279 (5%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
MPML PP+ W G + +MR ++ ++ P L V AL+ LG+
Sbjct: 679 MPMLCPPVPWTSPTFGAFVLNDTKLMRFMDETTYHQQLLEQCPLVNLHAVLDALNQLGNC 738
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP-------EKPNTDDETEIKKWKWKVK 520
W++N+ +L +I ++ G ++ D+P P P ++ + K +K +V
Sbjct: 739 AWKINQPVLDIIISIFNDKGN-----EKLDIPPPLSEAPKPPTPPSNSSSWSKSFKHEVF 793
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
KK+ +E HS R D KLS+A ++D+ F++PHN+DFRGR YP PY NHLG+D+ R
Sbjct: 794 LCKKKAAEMHSLRMDALYKLSIANYVRDK-VFWFPHNMDFRGRTYPCPPYFNHLGNDVTR 852
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+L F EG PLG GL WLKIHL NL G K + + R+ + ++DI DSADRPL G
Sbjct: 853 AILLFAEGRPLGPRGLDWLKIHLINL-TGLKKKNALQERLEYANEIMEDILDSADRPLTG 911
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
R+WW+ ++P+Q LA C+ +++A RSP P + ISH PVH
Sbjct: 912 RKWWMDTDEPWQALACCMEIAKASRSPDPAAYISHFPVH 950
>gi|195470409|ref|XP_002087499.1| GE15788 [Drosophila yakuba]
gi|194173600|gb|EDW87211.1| GE15788 [Drosophila yakuba]
Length = 1366
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 180/616 (29%), Positives = 281/616 (45%), Gaps = 72/616 (11%)
Query: 103 ELIDQFNEK--GVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----Q 155
EL++ NE V + D G TA+ L R Q+KIE + +
Sbjct: 466 ELLNHLNEHVLPVGAKEEPGKADYAIMNSKRGYTTAQLEQLAREQLKIELDGSITIKSIE 525
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTY 210
+KE+ + ++ C ++L + L W + + AI +D T AQ ++K M Y
Sbjct: 526 KSKEFAN--SEKCRERL-------RELEDTWRKQISAAIVRDLNTLRAQVRFKPHGFMNY 576
Query: 211 APYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y L A A I + +L L + V Q ++G+ ++ +I+ KK
Sbjct: 577 YTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KK 631
Query: 270 KNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N T LE E ++ E Q+ ++ L+ +Q+ + PW
Sbjct: 632 HNGT---LEKVGEIYSSYCELWDSGMSQDNSRQAWQRLVHEQR----ESGPSMDLPEVPW 684
Query: 328 GQDALVKVGCRLIQLLMETAYI------QPPVDQLGDSPPDIRPAFVHTLKS---FTKEA 378
+ L VG L +LM I Q + P ++ PAF ++ F KE
Sbjct: 685 PSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNLLPAFYTLFRNQGRFVKEE 744
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
+K P++ + L + R + + +PML PP W + GG+ S ++
Sbjct: 745 VKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 795
Query: 435 RT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
R H A QQ + I + L P +L+ L S WRVN ++L VI ++ +GG V
Sbjct: 796 RLPHQAIQQWDRITASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIGVFQNGGDAKLDV 855
Query: 494 DQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
Q L E T K+++ K+ +KQ +E +S CD +LS+A
Sbjct: 856 PQPPSSLPPLPMLPAKDAEGNATSSADRAKEFRDKLGHRRKQ-AEMYSLWCDALYRLSLA 914
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+H
Sbjct: 915 QHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 973
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++
Sbjct: 974 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIANV 1032
Query: 664 LRSPSPESTISHIPVH 679
RSP P + +S P+H
Sbjct: 1033 HRSPDPAAYLSRFPIH 1048
>gi|195350263|ref|XP_002041660.1| GM16628 [Drosophila sechellia]
gi|194123433|gb|EDW45476.1| GM16628 [Drosophila sechellia]
Length = 1364
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 179/616 (29%), Positives = 282/616 (45%), Gaps = 72/616 (11%)
Query: 103 ELIDQFNEKGVSI--LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIE-----TEAWEQ 155
EL+D NE + + + D G TA+ L R Q++IE T +
Sbjct: 464 ELLDHLNEHIIPVGAKEEPGKADYAIMNSKRGYTTAQLEQLAREQLRIELDGSITIKSIE 523
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTY 210
+KE+ + ++ C ++L + L W + + AI +D T AQ ++K M Y
Sbjct: 524 KSKEFAN--SEKCRERL-------RELEDTWRKQILAAIVRDLNTLRAQVRFKPHGFMNY 574
Query: 211 APYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y L A A I + +L L + V Q ++G+ ++ +I+ KK
Sbjct: 575 YTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KK 629
Query: 270 KNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N T LE E ++ E Q+ ++ L+ +Q+ + PW
Sbjct: 630 HNGT---LEKIGEIYSSYCELWDSGMSQDNTRQAWQRLVHEQR----ESGPSMDLPEVPW 682
Query: 328 GQDALVKVGCRLIQLLMETAYI------QPPVDQLGDSPPDIRPAFVHTLKS---FTKEA 378
+ L VG L +LM I Q + P ++ PAF ++ F KE
Sbjct: 683 PSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEE 742
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
+K P++ + L + R + + +PML PP W + GG+ S ++
Sbjct: 743 VKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 435 RT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
R H A QQ + I + L P +L+ L S WRVN ++L VI +++ +GG V
Sbjct: 794 RLPHQAIQQWDRIMASNPQHLYPGLDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLDV 853
Query: 494 DQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
Q L E T K+++ K+ +KQ +E +S CD +LS+A
Sbjct: 854 PQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQ-AEMYSLWCDALYRLSLA 912
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+H
Sbjct: 913 QHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 971
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++
Sbjct: 972 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1030
Query: 664 LRSPSPESTISHIPVH 679
R P P + +S P+H
Sbjct: 1031 HRCPDPAAYLSRFPIH 1046
>gi|156386128|ref|XP_001633765.1| predicted protein [Nematostella vectensis]
gi|156220840|gb|EDO41702.1| predicted protein [Nematostella vectensis]
Length = 496
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 158/278 (56%), Gaps = 10/278 (3%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS---QLEPVFQALDTLG 465
+PMLVPP WRG GG P +MR+ + + +L V +L+ LG
Sbjct: 6 LPMLVPPRPWRGIRDGGFLIQPVQLMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLG 65
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP----EKPNTDDETEIKKWKWKVKT 521
+ W+ N RIL + +++ G + VPL EK + E +K+ + + +
Sbjct: 66 TCAWKTNNRILDLAIQVFNDQGDDTLAIPGPVVPLELEPLEKSVKEPEARMKQIQ-EHRR 124
Query: 522 AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 581
A+K E +S R KLSVA +D F+ P N+DFRGR YP+ P+ H+G DL RG
Sbjct: 125 ARKLAREHYSLRMTALYKLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRG 183
Query: 582 VLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
+L+F EG PLG GL WLKIHLANLY G K S + RV +T+ + ++ DSAD PL G
Sbjct: 184 MLQFAEGVPLGPDGLRWLKIHLANLY-GAKKKSSLDERVEYTDQMMSEVLDSADNPLTGA 242
Query: 642 RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
RWW+ ++P+Q LATC+ +++A+RSP P +SH PVH
Sbjct: 243 RWWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVH 280
>gi|340380901|ref|XP_003388960.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Amphimedon queenslandica]
Length = 554
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 160/275 (58%), Gaps = 8/275 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
+PM VPP W G PS V+RTH ++ + + L PV +L+ L
Sbjct: 10 IPMRVPPQPWTDATNGAFLLTPSSVVRTHYDSFHQQLL-LKAADSLSPVLDSLNYLSLYP 68
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQE---DVPLPEK-PNTDDETEIKKWKWKVKTAKK 524
WRVN RIL + ++ GG + + + D PLP+ + D+ET K +K + KK
Sbjct: 69 WRVNNRILDMAIDIFNQGGDKSLDIPTDELFDKPLPKYIKDIDEETRKKIYKERF-AIKK 127
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+N+E S + + LS+ +D F+ PHN+DFRGR YP+ P+L+H+ SDL R +L+
Sbjct: 128 ENAENFSLKMTLLYNLSMCNHFRDCL-FWLPHNMDFRGRVYPIPPHLSHMSSDLSRSLLQ 186
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F G PLG+ GL WLKIH+A L+ G K S R+ +T++ +DDI DSAD+PLEGR WW
Sbjct: 187 FGVGQPLGRRGLEWLKIHIATLH-GAKSKSSLNERLEYTDSIIDDIADSADKPLEGRGWW 245
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A+ P+Q LA + L +ALRS PE+ ISH +H
Sbjct: 246 RTADVPWQTLAASMELMDALRSGDPENFISHTTIH 280
>gi|193599102|ref|XP_001946877.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Acyrthosiphon pisum]
Length = 1249
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 159/286 (55%), Gaps = 22/286 (7%)
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTL 464
+ +PML PP+ W N GG+ + ++R A Q ++ TP+ +L P AL+ L
Sbjct: 661 VTMIPMLSPPVPWTSINSGGYIAAKADLIRLPQQAILQWHRLEQTPKQELYPALDALNQL 720
Query: 465 GSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP-----------EKPNTDDETEIK 513
S W +NK +L V+ +++ SGG + D+P P + + D+ + +
Sbjct: 721 ASIPWNINKPVLDVVLQVFRSGGS-----SKLDIPKPVSAFPSPQPILQSMSKDERSRLY 775
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
K + K+Q +E S CD +LS+A + F+ PHN+DFRGR YP P+LNH
Sbjct: 776 KER---AILKRQKAEMFSLWCDALYRLSLANHFCGK-TFWLPHNMDFRGRVYPCPPHLNH 831
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
LGSD+ R +L F +G PLG GL+WLKIH NL G + S + R+ + E L DI +S
Sbjct: 832 LGSDMARSLLCFAKGEPLGSNGLNWLKIHCVNL-TGLKKRNSVKERLQYAEEILPDILNS 890
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A PL G WW +E+P+Q LA CI +S AL+ +PE+ ISH PVH
Sbjct: 891 AHNPLGGNMWWAESENPWQTLACCIEISHALQLENPENFISHFPVH 936
>gi|320170252|gb|EFW47151.1| T7 bacteriophage-type single subunit RNA polymerase [Capsaspora
owczarzaki ATCC 30864]
Length = 948
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 151/494 (30%), Positives = 233/494 (47%), Gaps = 32/494 (6%)
Query: 202 QDKW-----KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIEN 256
Q +W HMT +P N + A ++ V++ KL + ++ V A C+ A +
Sbjct: 158 QQRWLLAVVAHMTNSP--NPVYAPLLEVLSRRKLASIAISTLTREVVGSAGCRHVLAASH 215
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
R S K+ A N + K K K ++ K +Q
Sbjct: 216 IGRQVHMAYSLKRLGAGGNEFARLAASFPKFMAKFKKSAMPGKVVPDHVVWKTFIQHHLI 275
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
VK V W +D V +G L+ L+ A I+P + + D P + T+ +
Sbjct: 276 GVKA-VSVPDWSEDTFVAIGGALLSHLIAAAEIRPGMADVVDFVPHVEHNRKVTMLCPNE 334
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP----SY 432
++ + V D VR + + +PM+VPP+ W +N GG+ L S
Sbjct: 335 HLVQF--FKVHPRD--VRNQTFQFAK-----MLPMVVPPIPWISHNHGGYLLLSATGRST 385
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG-CLAG 491
+MRT QR +K++ +++L VF AL+ + +T+WRVN R+L + +W GG
Sbjct: 386 LMRT-IHNDQRRILKLS-QNRLGGVFDALNAIQTTEWRVNSRVLAIQIAIWNQGGDPELD 443
Query: 492 LVDQEDVPLPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
+ D +D+P P +P D T + ++ + +++N HS RC ++ +L +A K++
Sbjct: 444 IPDVKDIPEPRQPTGADATHTVMAEYFATRQQIREENRNMHSMRCTVQYQLLIAYKLRHN 503
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
Y P NLD+RGRAY + P L HLG D+ R L F + PLG+ GL WLK+HLANL
Sbjct: 504 R-LYMPVNLDWRGRAYTVSPNLTHLGGDMTRSTLMFHQRRPLGENGLFWLKVHLANL--C 560
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLE---GRRWWLGAEDPFQCLATCINLSEALRS 666
G DK S + RV F +++ I DSA PL+ G WW E+P+Q LA C L A
Sbjct: 561 GADKCSLQDRVKFVDSNWKHIIDSARDPLKERGGLGWWRQQENPWQALAACFELDAATSL 620
Query: 667 PSPESTISHIPVHM 680
P +PV M
Sbjct: 621 PDHRLYECGLPVQM 634
>gi|198475283|ref|XP_001356998.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
gi|198138752|gb|EAL34064.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
Length = 1363
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 170/583 (29%), Positives = 268/583 (45%), Gaps = 68/583 (11%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWE-----QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW 186
G AK L R Q+K+E + + KE+ + AD C ++L K L W
Sbjct: 496 GYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFAN--ADKCRERL-------KELEQSW 546
Query: 187 FEPLRDAIAKDQAT--AQDKWK---HMTYAPYFNNLPADMMAVITMHKLVGL-LMTNAGE 240
+ + AI +D T AQ ++K +M Y Y +L A I + +L L +
Sbjct: 547 RKQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKLGEGSETFS 606
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN--DPEKLIKEQEKL 298
V Q ++GE ++ +I+ KK N T LE E ++ D Q+
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGT---LEKVGEIYSSYCDLWDSGNTQDNA 658
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV----- 353
++ L+ +Q+ + PW + L VG L +LM I P +
Sbjct: 659 RQAWQRLVHEQR----ESGPSMDLPEVPWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKS 714
Query: 354 DQLGDSPPDIRPAFVHTLKS---FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-- 408
S ++ PAF ++ KE +K P++ + L + R + +
Sbjct: 715 KSKTTSSQNLLPAFYTLFRNQGRLVKEEVKPH--------PVLSR-LLRGSRQQTLTFDS 765
Query: 409 --MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLG 465
+PML PP W + GG+ S ++R H A QQ E I+ + L P +L+ L
Sbjct: 766 NLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPALDSLNQLA 825
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQED---------VPLPEKPNTDDETEIKKWK 516
S WRVN ++L VI ++ +GG V Q + E + K+++
Sbjct: 826 SVPWRVNTQLLDVIIEVFQNGGDAKLDVPQPPTSLPPLPTILKNSEGSGVSNADLAKQFR 885
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
K+ +K+ +E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGS
Sbjct: 886 EKLGHRRKK-AEMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGS 943
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL R +L F++ PLG G WLK+H NL G + S R+ + E + +I DSAD
Sbjct: 944 DLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPEILDSADN 1002
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL G WW ++ P+Q L C+ ++ RSP P + +S P+H
Sbjct: 1003 PLTGGMWWAKSDAPWQTLGCCMEIANVHRSPDPAAYMSRFPIH 1045
>gi|195388547|ref|XP_002052941.1| GJ17831 [Drosophila virilis]
gi|194149398|gb|EDW65096.1| GJ17831 [Drosophila virilis]
Length = 1374
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 172/618 (27%), Positives = 278/618 (44%), Gaps = 72/618 (11%)
Query: 103 ELIDQFNEK----GVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE---- 154
EL+++ N K G + ++S D + G A+ + R Q+K+E +
Sbjct: 470 ELLNELNAKVLPVGAELAAAASDEDCVMMRSKRGFSKAQLEQMAREQLKVELDGCITIKS 529
Query: 155 -QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HM 208
+ +KE+ + A+ C KL K L W + + AI +D T AQ ++K +M
Sbjct: 530 IENSKEFAN--AEYCRGKL-------KELEQNWRKQISAAIVRDLNTLRAQVRFKPHGYM 580
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L + + I + +L L + V Q ++G+ ++ Q +
Sbjct: 581 NYYTYLKVLDTNHFSDILIKELYKLAEGSETFSPTVGQLYRELGQRVQ-----QCYQIEQ 635
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
KK N T + GD D ++ ++ L+ Q+ + PW
Sbjct: 636 KKHNGTLEKI-GDIYSDYCDLWASGHTEDNTRQMWQRLVHAQR----HSGPSMDLPEVPW 690
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPV--------DQLGDSPPDIRPAFVHTLKS---FTK 376
+ L VG L +LM I + +P ++ PAF ++ K
Sbjct: 691 PTNVLAGVGRFLYNILMRDIKIDAHIMRQKSKTKTTATTTPQNLLPAFYTLFRNQGRLVK 750
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSY 432
E +K P++ + L + R + + +PML PP W GG+ S
Sbjct: 751 EEVKPH--------PVLSRLL-RASRQQTLTFDSNLVPMLCPPQPWSTPQNGGYLLNKSE 801
Query: 433 VMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
++R H A QQ E I+ L P +L+ L S WRVN ++L VI ++ GG
Sbjct: 802 LIRLPHQAVQQWERIRAANPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQKGGDAKL 861
Query: 492 LVDQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS 541
V Q L + + K ++ K+ ++Q +E +S CD +LS
Sbjct: 862 DVPQPPSSLPPLPTLPTGEKDGSSVSPAERAKLFRDKLGHRRRQ-AEMYSLWCDALYRLS 920
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+
Sbjct: 921 LAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 979
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
H NL G + S R+ + E + +I DSAD PL GR WW +++P+Q LA C+ ++
Sbjct: 980 HCINL-TGTKKRDSVRERLLYAEEIMPEILDSADNPLTGRMWWAKSDEPWQTLACCMEIA 1038
Query: 662 EALRSPSPESTISHIPVH 679
+ RSP P + +S P+H
Sbjct: 1039 KVQRSPDPAAYLSRFPIH 1056
>gi|89148152|gb|ABD62818.1| mitochondrial single-subunit RNA polymerase [Liceales sp. orange
ball]
Length = 392
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 114/160 (71%), Gaps = 3/160 (1%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
+ ++ N++ HS CD KL VA KM D FY PHN+DFRGRAYP+ P+LN LGSDLC
Sbjct: 4 RKVRQLNNDLHSLWCDATYKLDVAAKMMDHT-FYLPHNVDFRGRAYPLPPHLNQLGSDLC 62
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
RG+L + PLG GL WLK+HLANLY GVDK+ +E RVAF + ++D++ D+ D PL
Sbjct: 63 RGLLLLDTAKPLGPRGLWWLKVHLANLY--GVDKVPFEARVAFVDKNIDNVMDAGDNPLG 120
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR WWL A+DP+QCLATC L+ A+RS PE+ S IPVH
Sbjct: 121 GRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVH 160
>gi|157124670|ref|XP_001654145.1| hypothetical protein AaeL_AAEL001847 [Aedes aegypti]
gi|108882774|gb|EAT46999.1| AAEL001847-PA [Aedes aegypti]
Length = 1271
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 184/367 (50%), Gaps = 16/367 (4%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
V S W + A+ VG L +L I + P + PAF + K A +
Sbjct: 595 VQSVTWPKAAVNGVGKFLYNILKNDLKINVNATSKANRQPKLVPAFYSLFRYEAKIAKEQ 654
Query: 382 RRYGVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
I+ P++ K K+ + + I +PM+ PP W GG+ S ++R
Sbjct: 655 -----IKPHPVLIKLYRKSQQENLKFDINLVPMVCPPQPWSTPVNGGYILAKSDLIRLPQ 709
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
A QQ E I + P AL+ L S W+VN+ +L ++ ++ +GG V +
Sbjct: 710 QAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEEVLDIVLEVFNNGGNAKLDVPEPP 769
Query: 498 VPLPEKPNTDDETEIKKWKW-----KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
LP T E+ + K T +++ + +S CD +LS+A +D+ F
Sbjct: 770 SSLPSIVETIPRNEMTGFDRFNMVRKKMTHRRKQGDMYSLWCDALYRLSLANHFRDK-VF 828
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
+ P N+DFRGR YP+ P+LNHLG DL R ++ F + PLG G +WLK+H NL G
Sbjct: 829 WLPQNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKK 887
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
+ S E R+ + + +DDI DSADRPL GR WW +++P+Q LA CI +++ RSP+P
Sbjct: 888 RDSVEDRLKYADEIMDDILDSADRPLTGRMWWSSSDEPWQTLACCIEIAKVHRSPNPAKF 947
Query: 673 ISHIPVH 679
+S P+H
Sbjct: 948 MSGFPIH 954
>gi|425885852|gb|ADK56281.1| putative T7-like RNA polymerase [Heterocapsa triquetra]
Length = 1106
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 159/573 (27%), Positives = 268/573 (46%), Gaps = 86/573 (15%)
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW-------FEPLRDAI 194
+RRQ+ IE E A +++ + A + ++ A + +++ W E LRD
Sbjct: 259 RRRQLVIERETLTMALRDFLEDQARLIQEGNAAAAHGSRKVWMDWVRALVEQIEALRDDD 318
Query: 195 AKDQATAQD-KWKHMTYAPYFNNLPAD--MMAVITMHKLVGLLMT-------NAGEVRVV 244
A ++ A+ + K A +LP D ++AVIT H ++ ++ G V
Sbjct: 319 ADNEVKARVLQGKGAKAAKLMRDLPLDAQLLAVITCHTVLNQMLVPHYRNENEPGMAPFV 378
Query: 245 QAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS 304
+G+A+ENE +S T+ K +++ +
Sbjct: 379 SLVVAVGDAVENECIYRSQELPTQAKR-------------------------EIRVLINQ 413
Query: 305 LIKKQKLQQVRGIVKGHVDSKPWGQDA-LVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
L ++ L ++ W + + V +G L+ +L+E +Q D L +
Sbjct: 414 LQRRNSLGRL------------WDKASQTVPIGAALVDMLLEVGQVQ---DGLAPDGSGM 458
Query: 364 RPAFVHTLK--------SFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPP 415
AF H L + K + R+ VI D E R+++ + PM+VPP
Sbjct: 459 AKAFTHELVWEGKHKLCGYVKLTDRARQALVIGTD------AEGLMRYLVPKHQPMVVPP 512
Query: 416 LNWR--GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNK 473
+ WR G + G + + S + + +P + V + +D++GST WRVNK
Sbjct: 513 VPWRPSGESPQGCYLMRSVPFIRTPMQSLAQLRAYSPTT----VARVMDSVGSTPWRVNK 568
Query: 474 RILGVIDRMWASGGCLAGLVDQE--DVP-LPEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
IL +++ + +AG+ +VP LP+ + E +K K + A KQ +
Sbjct: 569 DILRLMEEVSQRDLAVAGVPPHHNPEVPVLPKDQGSLSEQALKDLKLRRDNAMKQCQQLA 628
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S R LKL A+ + E Y+PHN+DFRGRAYP+ P+LNH+G D+CRG+L+F + P
Sbjct: 629 SDRPTFFLKLRSAQDFEHAERIYFPHNVDFRGRAYPVPPHLNHIGDDVCRGLLQFADPKP 688
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL--EGRRWWLGAE 648
LGK GL+WLK+ + L G +K++++ RV + + + I A+ PL E ++W A+
Sbjct: 689 LGKDGLYWLKVTICGLL--GKNKITFDARVEYIDGLKELIIAVAEDPLAEEHLKFWAEAD 746
Query: 649 D-PFQCLATCINLSEALRSPSPESTISHIPVHM 680
D P+Q LA C L+ A +S PES +S P+H+
Sbjct: 747 DGPWQTLARCQELAAAWKSGDPESFMSAQPIHL 779
>gi|304274392|gb|ADM18943.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274394|gb|ADM18944.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274400|gb|ADM18947.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274402|gb|ADM18948.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 193 bits (491), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/144 (60%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
+ KL +AR DE+ FY+PHNLDFRGRAYP+ P L+H+G D+CRG+L F E PLG+ G
Sbjct: 1 LNYKLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERG 59
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIHL+NL G DK S++ R AF HLDDIFDSAD+PL+G+RWWL A+DP+QCLA
Sbjct: 60 LRWLKIHLSNL--TGFDKASFDEREAFAMEHLDDIFDSADQPLDGKRWWLKADDPWQCLA 117
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
TCI L+ ALRSP P +P+H
Sbjct: 118 TCIELAAALRSPIPTEYACALPIH 141
>gi|89148148|gb|ABD62817.1| mitochondrial single-subunit RNA polymerase [Rosculus sp. ATCC
50888]
Length = 1285
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 150/627 (23%), Positives = 270/627 (43%), Gaps = 139/627 (22%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------- 197
Q+ +E + +A EY +L M + A +L ++ L WF+PL ++I K+
Sbjct: 109 QLNLEHTSITKAVDEYTELTEQMTKMGRASHLSPLQDHVLRWFKPLAESIEKEILDCRAK 168
Query: 198 -----------------------------QATAQDKWKHMT-------YAPYFNNLPADM 221
TAQ + + PY N L
Sbjct: 169 LAVLANNSGDGSSTNNDEDDNGDNEPTKGGNTAQQRQQLSAQLNDLKLILPYINQLKPTE 228
Query: 222 MAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEA-------------RIQSFFKSTK 268
+ I +H+ + ++ +RV+ + IG + EA R++ ++ K
Sbjct: 229 LGCIALHETLSRILNAPNGMRVIDLSISIGRVVNTEANFLQLRQDRANFQRLRRYYPGAK 288
Query: 269 K-----KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG--- 320
+ A +N + +++ ++ +++ +++ + + QQ++ I
Sbjct: 289 LNEQVIRRAVNNQSKNNNDKDGDNNTSNNSNNQQMPNNMSTFNRYKDNQQLKSIGPNQPS 348
Query: 321 -------HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL--------GDSPPDIRP 365
+ ++ W KVG LI+ +++ + + Q P +
Sbjct: 349 DQYGYALNSENATWSDLVQAKVGSFLIKHMLQHHQLSKKLTQSLVHFTSVENQHQPRLPT 408
Query: 366 AFVHTLK-----SFTKE--ALKGRRYGVIECDPLVRKGLEKTGRH---MIIPYMPMLVPP 415
+ T++ +FT E ++ G I C VR L + + +PM++PP
Sbjct: 409 SANSTIQQIEVPAFTYEHRSVGNHYVGYITCHHDVRNVLNSAHTDVSTLAVRLLPMVIPP 468
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
WR GG+ +PS ++R+ G+R+Q I S ++ V ++L+ LG W +N +
Sbjct: 469 RPWRSVRDGGYLSVPSSIIRSKGSRKQ---IDAVVASDIKTVQESLNYLGRVAWSINNHV 525
Query: 476 LGVIDRMWASGGCLAGLVDQEDVPLPEKP------------------------NTDDETE 511
L VID+ W GG LA + + D+PLP++P T +E +
Sbjct: 526 LSVIDQAWDEGGGLASMPTRRDIPLPQQPVLNLLQYDEKKNRYFAPSAATIKAMTKNEGD 585
Query: 512 IKKWKWKVKTA--------------------KKQNSEKHSQRCDIELKLSVARKMKDEEG 551
+ ++ T+ + N++ HS RCD+ L+L+ A+++
Sbjct: 586 VDTSDGQLSTSDQLVQQTQQWRQYQRDMQRISQHNADLHSLRCDLSLRLNQAKQLTGNP- 644
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
Y+P N+DFRGRAYP+ P+LNHLGSDL R +L F PLG+ GL+WL+ HLA + GV
Sbjct: 645 VYFPLNMDFRGRAYPIPPHLNHLGSDLARALLLFHHKKPLGEKGLYWLQAHLAAQF--GV 702
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPL 638
DK+S++ RV + E H+ + D+A RP+
Sbjct: 703 DKVSFDDRVKYIEQHMHLVRDTAKRPM 729
>gi|304274396|gb|ADM18945.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274398|gb|ADM18946.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 193 bits (490), Expect = 3e-46, Method: Composition-based stats.
Identities = 86/144 (59%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
+ KL +AR DE+ FY+PHNLDFRGRAYP+ P L+H+G D+CRG+L F E PLG+ G
Sbjct: 1 LNYKLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERG 59
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
L WLKIHL+NL G DK S++ R AF HLDD+FDSAD+PL+G+RWWL A+DP+QCLA
Sbjct: 60 LRWLKIHLSNL--TGFDKASFDEREAFAMEHLDDVFDSADQPLDGKRWWLKADDPWQCLA 117
Query: 656 TCINLSEALRSPSPESTISHIPVH 679
TCI L+ ALRSP P +P+H
Sbjct: 118 TCIELAAALRSPVPTEYACALPIH 141
>gi|157111313|ref|XP_001651483.1| DNA-dependent RNA polymerase, putative [Aedes aegypti]
gi|108868341|gb|EAT32566.1| AAEL015297-PA [Aedes aegypti]
Length = 767
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 16/367 (4%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
V S W + A+ VG L +L I + P + PAF + K A +
Sbjct: 146 VQSVTWPKAAVNGVGKFLYNILKNDVKINVNATSKANRQPKLVPAFYSLFRYEAKIAKEQ 205
Query: 382 RRYGVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
I+ P++ K K+ + + I +PM+ PP W GG+ S ++R
Sbjct: 206 -----IKPHPVLIKLYRKSQQENLKFDINLVPMVCPPQPWSTPVNGGYILAKSDLIRLPQ 260
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
A QQ E I + P AL+ L S W+VN+ +L ++ ++ +GG V +
Sbjct: 261 QAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEEVLDIVLEVFNNGGNAKLDVPEPP 320
Query: 498 VPLPEKPNTDDETEIKKWKW-----KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
LP T E+ + K T +++ + +S CD +LS+A +D+ F
Sbjct: 321 SSLPSIVETIPRNEMTGFDRFNMVRKKMTHRRKQGDMYSLWCDALYRLSLANHFRDKV-F 379
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
+ P N+DFRGR YP+ P+LNHLG DL R ++ F + PLG G +WLK+H NL G
Sbjct: 380 WLPQNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKK 438
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPEST 672
+ S E R+ + + +DDI DSADRPL GR WW +++P+Q LA CI +++ RSP P
Sbjct: 439 RDSVEDRLKYADEIMDDILDSADRPLTGRMWWSSSDEPWQTLACCIEIAKVHRSPDPAKF 498
Query: 673 ISHIPVH 679
+S P+H
Sbjct: 499 MSGFPIH 505
>gi|195051970|ref|XP_001993208.1| GH13202 [Drosophila grimshawi]
gi|193900267|gb|EDV99133.1| GH13202 [Drosophila grimshawi]
Length = 1379
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 164/586 (27%), Positives = 268/586 (45%), Gaps = 69/586 (11%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWE-----QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW 186
G + L R Q+++E + + + KE+ + A+ C KL K L GW
Sbjct: 506 GYSKTQLEQLAREQLQVELDGYITIKSIEKTKEFAN--AEYCRSKL-------KELEQGW 556
Query: 187 FEPLRDAIAKDQAT--AQDKWK---HMTYAPYFNNLPADMMAVITMHKLVGLLM-TNAGE 240
+ + AI +D T AQ ++K +M Y Y L A I + +L L +
Sbjct: 557 RKQISAAIVRDLNTLRAQVRFKPHGYMNYYTYLKVLDTTQFADILIKELYKLAEGSETFS 616
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK 300
V Q ++G+ ++ +I+ KK N + GD + + + ++
Sbjct: 617 PTVSQLYKELGQKVQQCYQIEQ-----KKHNGILEKI-GDIYSAYCELWDSGRTTDNTRQ 670
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-- 358
L+ ++ + PW + L VG L +LM I + +
Sbjct: 671 MWQRLVHDER----HSGPSMDLPEVPWPTNVLAGVGRFLYNILMRDIKIDAHIMRQKSKA 726
Query: 359 -------SPPDIRPAFVHTLKS---FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
+ ++ PAF ++ KE +K P++ + L + R + +
Sbjct: 727 KTTSATMASHNLLPAFYTLFRNQGRLVKEEVKPH--------PVLSRLL-RASRQQTLTF 777
Query: 409 ----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDT 463
+PML PP W + GG+ S ++R H A QQ E I+ + L P +L+
Sbjct: 778 DSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRSSNPQHLYPAIDSLNQ 837
Query: 464 LGSTKWRVNKRILGVIDRMWASGG-----CLAGLVDQEDVPLPEKPNTDDET-----EIK 513
L S WRVN ++L VI +++ +GG +P + D ET K
Sbjct: 838 LASVPWRVNTQLLDVIIKVFRNGGNAKLDVPQPPSSLPPLPTLPSSDKDSETVSPAERAK 897
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+++ K+ +KQ +E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNH
Sbjct: 898 QFRDKLGHRRKQ-AEMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNH 955
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
LGSDL R +L F++ PLG G WLK+H NL G + S R+ + E + DI DS
Sbjct: 956 LGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPDILDS 1014
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AD PL GR WW +++P+Q L C+ +++ RSP P + +S P+H
Sbjct: 1015 ADNPLTGRMWWAKSDEPWQTLGCCMEIAKVQRSPDPAAYLSRFPIH 1060
>gi|328786720|ref|XP_001121402.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 664
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 193/363 (53%), Gaps = 26/363 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG- 385
W D + +G L ++++ +QP + + D I PAF ++ KG
Sbjct: 294 WPMDVITNIGKFLYKIILNDIMLQPEMLKGQDIKHSI-PAFYTLFRN------KGNYLSE 346
Query: 386 VIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
I+ P + K +K + + +P PPL W + GG+ + +R+ Q
Sbjct: 347 QIKPHPFLSKLYKKLHMETLTFDVRLLPSYSPPLPWTSIHSGGYLITKTNFIRS-PIEHQ 405
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
+ IK QL PVF +L+ + S W++N IL ++ +++ GG + V Q V +
Sbjct: 406 FQNIK---SKQLFPVFDSLNQISSIPWKINTAILDIVIKIFQDGGSVELNVPQ-SVSVLS 461
Query: 503 KPNTDDETEIKKWKWKVKTAKKQNSEK----HSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P + ++ + K ++ A Q +K ++ CD KLS+A +++ F+ P+NL
Sbjct: 462 PPCSLNKNATIEEKQQIAIAIAQYKQKKKDMYALWCDTLYKLSIANHFRNK-IFWLPYNL 520
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL--YAGGVDKLSY 616
DFRGR YP+ PYLNHL SDL R +L F +G PLG G++WLK+H+ NL + G S
Sbjct: 521 DFRGRVYPIPPYLNHLSSDLGRSLLLFAKGKPLGPNGINWLKLHVINLTNFKKGS---SL 577
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R+ + + ++D+I DSA +PL G+ WW +E+P+Q LA CI ++ AL+SP+ E I+
Sbjct: 578 KERLEYADQNMDNIIDSATKPLTGKMWWKQSEEPWQTLAGCIEIANALKSPNIEKYITSF 637
Query: 677 PVH 679
PVH
Sbjct: 638 PVH 640
>gi|332026140|gb|EGI66288.1| DNA-directed RNA polymerase, mitochondrial [Acromyrmex echinatior]
Length = 1257
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 184/368 (50%), Gaps = 33/368 (8%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK----SFTKEALKG- 381
W ++ ++ VG L +++ I P V + G +P PAF + +F KE +K
Sbjct: 602 WSRNTMINVGKFLYNIIVNDVKI-PHVPKPG-APERQIPAFYLLFRLHSNNFFKEEIKPH 659
Query: 382 ----RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
R Y + L + + +P+ PP W N GG+ + +R
Sbjct: 660 PQLYRFYKDAHSETLSFETI----------LLPIFSPPRPWVNVNTGGYLLSKAAFVRDP 709
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
+ ++ TP QL PVF L+ LGS W++N +L ++ +++ GG V Q
Sbjct: 710 YMKPS-HLLRNTPTKQLYPVFDCLNQLGSIPWKINIPMLDILIQIFRDGGSKELNVPQPS 768
Query: 498 VPLPEKPNT-DDET-----EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
+P + ET EI K + K K +E HS CD KLS+A +D+
Sbjct: 769 TVIPSSTDIIASETNKSPKEISKLLLQFKRMK---NEMHSLWCDCLYKLSLANHFRDK-V 824
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
F+ PHNLDFRGRAYP+ P+L HL SDL R +L F +G PLG GL WLKIH N+ +G
Sbjct: 825 FWMPHNLDFRGRAYPVPPHLTHLSSDLGRSILMFAQGKPLGSDGLDWLKIHAINM-SGLK 883
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+ R+ F LD I DSA PL G+ WW A++P+Q LATC + AL+SP+ E
Sbjct: 884 KREPMYKRLEFANEILDLIVDSARNPLTGKMWWTKADEPWQTLATCKEIDNALQSPNVEK 943
Query: 672 TISHIPVH 679
I +P+H
Sbjct: 944 YICRLPIH 951
>gi|194853889|ref|XP_001968243.1| GG24614 [Drosophila erecta]
gi|190660110|gb|EDV57302.1| GG24614 [Drosophila erecta]
Length = 1365
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 188/378 (49%), Gaps = 36/378 (9%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYI------QPPVDQLGDSPPDIRPAFVHTLKS---FTK 376
PW L+ VG L +LM I Q + P ++ PAF ++ F K
Sbjct: 682 PWPSTVLIGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNMLPAFYTLFRNQGRFVK 741
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSY 432
E +K P++ + L + R + + +PML PP W + GG+ S
Sbjct: 742 EEVKPH--------PVLSR-LFRASRKQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSE 792
Query: 433 VMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
++R H A QQ + I + L P +L+ L S WRVN ++L VI ++ +GG
Sbjct: 793 LIRLPHQAIQQWDRIMTSNPQNLYPALDSLNQLASVPWRVNTQLLDVIVHVFQNGGDAKL 852
Query: 492 LVDQEDVPL----------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS 541
V Q L E K+++ K+ +KQ +E +S CD +LS
Sbjct: 853 DVPQPPSSLPPLPMLPAKDAEGNAASSAERAKEFRDKLGYRRKQ-AEMYSLWCDALYRLS 911
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WLK+
Sbjct: 912 LAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 970
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
H NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++
Sbjct: 971 HCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIA 1029
Query: 662 EALRSPSPESTISHIPVH 679
R P P + +S P+H
Sbjct: 1030 NVHRCPDPTAYLSRFPIH 1047
>gi|195118034|ref|XP_002003545.1| GI21974 [Drosophila mojavensis]
gi|193914120|gb|EDW12987.1| GI21974 [Drosophila mojavensis]
Length = 1366
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 190/380 (50%), Gaps = 38/380 (10%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDS---------PPDIRPAFVHTLKS--- 373
PW + L VG L +LM I + + + P ++ PAF ++
Sbjct: 681 PWPNNVLSGVGRFLYNILMRDIKIDAHIMRQRSNKSKATGTTMPQNMLPAFYTLFRNQGR 740
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFL 429
KE +K P++ + L + R + + +PML PP W + GG+
Sbjct: 741 LVKEEVKPH--------PVLSR-LLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLN 791
Query: 430 PSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
S ++R H A QQ E I + L P +L+ L S WRVN ++L VI +++ +GG
Sbjct: 792 KSELIRLPHQAVQQWERIHASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGD 851
Query: 489 LAGLVDQEDVPL---------PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
V Q L + K+++ K+ +KQ +E +S CD +
Sbjct: 852 AKLDVPQPPSSLPPLPTLPVGEDGSGVSPADRAKQFRDKLGHRRKQ-AEMYSLWCDALYR 910
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG G WL
Sbjct: 911 LSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWL 969
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
K+H NL G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+
Sbjct: 970 KLHCINL-TGIKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCME 1028
Query: 660 LSEALRSPSPESTISHIPVH 679
++ RSP P + +S P+H
Sbjct: 1029 IANVYRSPDPAAYMSRFPIH 1048
>gi|391337783|ref|XP_003743244.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1172
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 150/282 (53%), Gaps = 19/282 (6%)
Query: 408 YMPMLVPPLNWRGYNRGGHFF--LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
++PML PP W +P + Q I P + P AL+ L
Sbjct: 584 FLPMLCPPKPWTRPKDTPFLISGVPLIRVMPDVGEHQMCAINDVPPENIYPALDALNVLS 643
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA--- 522
T WRVN +L V+ ++ G + + +P+ P + +I + + K+A
Sbjct: 644 RTPWRVNVPVLDVLTTVFLGEG-------DKKLSVPKDPAKMVQPDIAAIRAQSKSAART 696
Query: 523 -----KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+++ +E S CD+ KLS+A K + F++PHN+DFRGR YP P+ +HLG D
Sbjct: 697 RAMQFRREKAENFSLWCDMLYKLSIAHHFK-HDVFFFPHNMDFRGRVYPCPPHFHHLGGD 755
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ RG+L F EG PLG+ GL WLK+HL NL G + E RVAF + +D+I DSA P
Sbjct: 756 VIRGLLLFAEGKPLGEKGLWWLKLHLINL-TGFKKRRPIEERVAFADEIMDEILDSAQNP 814
Query: 638 LEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
L GR+WW ++DP+Q LA C ++ AL SP PE I H+P+H
Sbjct: 815 LTGRKWWQTSDDPWQTLAACKEIANALASPEPEKYICHLPIH 856
>gi|350395973|ref|XP_003484395.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Bombus
impatiens]
Length = 1000
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 187/366 (51%), Gaps = 27/366 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG- 385
W + ++ +G L +++ ++P + + D I PAF ++ KG
Sbjct: 337 WPINVIINIGKFLYHIILNDIMLKPDILKGQDLKYSI-PAFYTLFRN------KGNYLSE 389
Query: 386 VIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
I+ PLV K K + +P PP W + GG+ + +R +
Sbjct: 390 QIKPHPLVSKLYRKVHLKTLTFKSLLLPSYSPPSPWVSIHLGGYLITKTDFIRISSDFDR 449
Query: 443 R-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPL 500
+ T QL P+F +L+ L S W++N IL ++ +++ GG + V Q V +
Sbjct: 450 LWHKFENTEPEQLFPIFDSLNQLSSIPWKINTAILDIVIKIFQDGGSVELNVPQSVSVLI 509
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQNSEKH---SQRCDIELKLSVARKMKDEEGFYYPHN 557
P P + T +K K + A+ N EK+ S CD KLS+A +D+ F+ PHN
Sbjct: 510 PPGPINKNATVEEKQKAAIAIAQ-YNQEKYDMYSLWCDTLYKLSIANHFRDK-IFWLPHN 567
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY----AGGVDK 613
LDFRGR YP+ PYLNHL SDL R +L F +G PLG GL WLK+H+ NL AG V +
Sbjct: 568 LDFRGRVYPVPPYLNHLSSDLGRSLLLFGKGKPLGPNGLDWLKLHVINLTNFKKAGSVKE 627
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
R+ + ++D+I DSA +PL G+ WW +E P+Q LA C+ ++ AL++P+ E +
Sbjct: 628 -----RLEYANQNMDNILDSATKPLTGKMWWKQSEAPWQTLAGCMEIANALKTPNVEEYV 682
Query: 674 SHIPVH 679
S PVH
Sbjct: 683 SSFPVH 688
>gi|83376042|gb|ABC17825.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 155/289 (53%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R R E ++ TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPDEEAVE-TPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL SP P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIH 867
>gi|340730181|ref|XP_003403364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Bombus terrestris]
Length = 1248
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 25/365 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK---SFTKEALK--- 380
W QD ++ +G + +++ ++P + + D I PAF + ++ E +K
Sbjct: 594 WPQDVIINIGKFMYHIILNDIMLKPEMLKGQDLKYSI-PAFYTLFRNKGTYLSEQIKPHP 652
Query: 381 --GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR-TH 437
+ Y I + L + L +P PP W GG+ + +R +
Sbjct: 653 LVSKLYREIHLETLTFESL----------LLPSCSPPSPWVSIYLGGYLITNTDFIRISS 702
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
+ T QL P+F +L+ L S W++N IL ++ +++ GG + V Q
Sbjct: 703 DCSVLWHKFENTKPEQLFPIFDSLNQLSSIPWKINTAILDIVIKIFQDGGSVELNVPQSV 762
Query: 498 VPL-PEKPNTDDETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
L P P + T +K K + A+ ++ + +S CD KLS+A +++ F+
Sbjct: 763 SALTPPNPINKNATVEEKQKAAIAIAQYNQKKYDMYSLWCDTLYKLSIANHFRNK-IFWL 821
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHNLDFRGR YP+ PYLNHL SDL R +L F +G PLG GL WLK+H+ NL
Sbjct: 822 PHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKGKPLGPNGLDWLKLHIINL-TNFKKAD 880
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S + R+ + ++D+I DSA +PL G+ WW +E+P+Q LA C+ ++ AL++P+ E IS
Sbjct: 881 SVKERLEYANQNMDNILDSATKPLTGKMWWKQSEEPWQTLAGCMEIANALKAPNVEEYIS 940
Query: 675 HIPVH 679
PVH
Sbjct: 941 TFPVH 945
>gi|224105535|ref|XP_002333804.1| predicted protein [Populus trichocarpa]
gi|222838549|gb|EEE76914.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 130/217 (59%), Gaps = 52/217 (23%)
Query: 292 IKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQP 351
++EQE L+K+VT LIKKQKL VR IVK DSKP DA KVG RLI+LL++TAYIQP
Sbjct: 1 MEEQENLRKKVTDLIKKQKLPAVRKIVKWKDDSKPCNADARAKVGSRLIELLLQTAYIQP 60
Query: 352 PVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMP 410
P DQL DSP + RPAFVHT ++ + KG ++Y VI+CDPLV KGLEKT
Sbjct: 61 PCDQLADSPSEPRPAFVHTFRNVSYVNKKGVKKYVVIQCDPLVLKGLEKT---------- 110
Query: 411 MLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWR 470
F+ E + ALDTLG+T+WR
Sbjct: 111 ----------------VFI-------------------------ENMVNALDTLGNTRWR 129
Query: 471 VNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD 507
VNKR+L V+DR+W++GGCLA LVD DVPLPE+P T+
Sbjct: 130 VNKRVLSVVDRIWSNGGCLADLVDHSDVPLPERPETE 166
>gi|83376036|gb|ABC17822.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 153/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL SP P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNXISHLPIH 867
>gi|83376022|gb|ABC17815.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 153/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAFIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL SP P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIH 867
>gi|83376044|gb|ABC17826.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 153/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL SP P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIH 867
>gi|307191463|gb|EFN75004.1| DNA-directed RNA polymerase, mitochondrial [Camponotus floridanus]
Length = 1223
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 178/363 (49%), Gaps = 24/363 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ--PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W ++ L+ VG L ++++ I P D P F +F E +K Y
Sbjct: 570 WPRNVLLNVGEFLYKIILNDVKISHVPKPDTSERQIPAFYALFRKQTNNFLTEEIKPHPY 629
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
L + +T + +P PP W + GG+ F + +R
Sbjct: 630 ----LHRLYKDSHPETLTFETV-LLPTCSPPRPWIDIDTGGYLFSKTSFIRD-PYMTPTI 683
Query: 445 TIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP----- 499
++ TP QL P F L+ LGS WR+N +L ++ +++ GG ++ DVP
Sbjct: 684 LLRNTPMKQLYPAFDCLNQLGSIPWRINVPMLDILIKIFREGGS-----EKLDVPQSPSS 738
Query: 500 ---LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
L E + D + KK K + +K+N E ++ CD KLSVA +D+ F+ PH
Sbjct: 739 LPSLSELITSSDIDKSKKMKLAFQLRRKKN-EMYALWCDSLYKLSVANHFRDK-VFWLPH 796
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
NLDFRGRAYP+ P+L HL SDL R +L F +G PLG GL WLKIH NL G K S
Sbjct: 797 NLDFRGRAYPVPPHLTHLASDLSRSILLFAQGKPLGPKGLDWLKIHTINL-TGMKKKESI 855
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ R+ F LD I DSA PL G WW +++P+Q LA C + AL+SP E I +
Sbjct: 856 DQRLKFANEILDLIVDSARNPLTGEMWWTKSDEPWQTLAACKEIDNALQSPDVEKYICRL 915
Query: 677 PVH 679
P+H
Sbjct: 916 PIH 918
>gi|83376020|gb|ABC17814.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 939
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 157/291 (53%), Gaps = 29/291 (9%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS +L P AL+ LGS
Sbjct: 506 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVHTPRSANKLLPTLDALNQLGS 560
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIK-KWKWKVKT--- 521
T W +NK IL I ++ + + V +P P N + E++ K K++ T
Sbjct: 561 TPWIINKPILECIVEVFRHPKKYGAYLKR--VGIPRHPENIEPPAEVRSKAKFRDMTRDQ 618
Query: 522 --------AKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 568
A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+
Sbjct: 619 YSAFQQGQAQRQAFIQLQAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIP 677
Query: 569 PYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
PYLNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 678 PYLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGLXKKSSIRERMQYAEDNLS 736
Query: 629 DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + +SH+P+H
Sbjct: 737 LFLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSADPANYVSHLPIH 787
>gi|322785441|gb|EFZ12112.1| hypothetical protein SINV_03744 [Solenopsis invicta]
Length = 1179
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 180/362 (49%), Gaps = 21/362 (5%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W ++ L+ VG L +++ I P V + G +P PAF + + + L
Sbjct: 524 WSRNTLINVGKFLYNIIVNDVKI-PHVPKPG-APERQIPAFYLLFRLHSNKFLMEE---- 577
Query: 387 IECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR 443
I+ P + + + + + +P PP W N GG+ +R + R
Sbjct: 578 IKPHPHLHRFYKDSHSETLSFETISLPTFSPPRPWIDINTGGYLLSKVPFVRDIYMKPSR 637
Query: 444 ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEK 503
+K TP QL PV ++ LGS WR+N IL ++ +++ GG V Q +P
Sbjct: 638 -LLKNTPTKQLYPVLDCVNQLGSIPWRINVPILDILIQIFREGGSKELNVPQPSTVVPSS 696
Query: 504 PNT-DDET-----EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHN 557
+ET EI K ++K + +E ++ CD KLS+A +D+ F+ PHN
Sbjct: 697 SEVISNETDKNSREIAKLLLQLKRTR---NEMYALWCDCLYKLSLANHFRDK-VFWMPHN 752
Query: 558 LDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYE 617
LDFRGRAYP+ P+L HL SDL R +L F +G PLG GL WLKIH N+ G +
Sbjct: 753 LDFRGRAYPIPPHLTHLSSDLGRSILMFAQGKPLGPEGLDWLKIHTINM-TGLKKREPMH 811
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R+ F LD I DSA PL G WW A++P+Q LA C + AL++P+PE I +P
Sbjct: 812 KRLEFANKILDLIVDSARNPLTGEMWWAKADEPWQTLAACKEIDNALQAPNPEKYICRLP 871
Query: 678 VH 679
+H
Sbjct: 872 IH 873
>gi|383863127|ref|XP_003707034.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Megachile rotundata]
Length = 1152
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 189/362 (52%), Gaps = 21/362 (5%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W D L+ +G L +++ + P + + D I PAF +TL + L +
Sbjct: 496 WSLDVLINIGKFLYNIILNDIILHPNMLKGQDLKCSI-PAF-YTLFRNRENYLSEQ---- 549
Query: 387 IECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
I+ PLV K L + + I+ + +P PP W GG+ MR +
Sbjct: 550 IKPHPLVSK-LYRDSKTRILTFDSHILPSHAPPRPWTSIYSGGYLMTKIDFMRL-PSDSP 607
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
++ TP QL P+F +L+ L S W VN IL + +++ +GG V + L
Sbjct: 608 WHKLQNTPGKQLFPIFDSLNQLSSIPWMVNTDILDIAIKIFQNGGSEKLNVPRPISVLSL 667
Query: 503 KPNTDDETEIKKWKWKV---KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
P+ + I++ + V K++ + +S CD +LS+A ++++ F+ PHNLD
Sbjct: 668 PPSVKENATIQEKRSAVLALAQYKQKRYDMYSLWCDALYRLSIANHLRNK-VFWLPHNLD 726
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL--YAGGVDKLSYE 617
FRGR YP+ P+LNHL SDL R L F G PLG GL+WLK+H+ NL + G S +
Sbjct: 727 FRGRVYPVPPHLNHLSSDLGRSFLLFANGKPLGPDGLNWLKLHVINLTNFKKGS---SVQ 783
Query: 618 GRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677
R+ + ++++I DSA +PL G+ WW AE+P+Q LA C+ ++ AL++P+ E +S P
Sbjct: 784 ERLEYANQNMENILDSATKPLTGKMWWAEAEEPWQTLAGCMEIANALKTPNVEEYVSRFP 843
Query: 678 VH 679
VH
Sbjct: 844 VH 845
>gi|321470970|gb|EFX81944.1| hypothetical protein DAPPUDRAFT_49577 [Daphnia pulex]
Length = 975
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 418 WRGYNRGGHFFLPSYVMRTHG-ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRIL 476
W + GG+ ++R A +QR + TP QL P AL+ LGS WR+N IL
Sbjct: 406 WSSHKCGGYLVTDVSLVRLPAHASKQRLRLANTPPQQLYPALDALNALGSIPWRINGSIL 465
Query: 477 GVIDRMWASGGCLAGLVDQE----DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
++ +++ + G + Q +P P D ++K ++ ++ K+Q +E +S
Sbjct: 466 DLVTQIFNANGSKELHIPQPPSALAIPSPVAAEADGSHKVKAYRDRI-AFKRQKAEMYSL 524
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFR-GRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
CD +LS+A +D+ F+ PHN+DFR GR YP P+L HL D+ R +L F +G PL
Sbjct: 525 WCDSLYRLSLANHFRDKV-FWLPHNMDFRLGRVYPCSPHLTHLSHDMARSLLFFAQGKPL 583
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
G G +WLK+H+ NL G + R A+ E + +I DSAD PL GR+WW+ +++P+
Sbjct: 584 GADGFNWLKLHVINL-TGTKKREPISERYAYAEKIMPEILDSADNPLTGRQWWVNSDEPW 642
Query: 652 QCLATCINLSEALRSPS-PESTISHIPVH 679
Q LA C+ ++ ALR P PE+ + H+P+H
Sbjct: 643 QTLAACMEVANALRCPDGPEAYVCHLPIH 671
>gi|83376024|gb|ABC17816.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 153/290 (52%), Gaps = 27/290 (9%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PEKPNTDDETEIKKWKWKVKT---- 521
T W +NK IL I ++ + + +P PE E I K K++ T
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEA-ISKAKFRDMTRDQY 699
Query: 522 -------AKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
YLNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|83376026|gb|ABC17817.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 152/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|456738227|gb|EMF62904.1| DNA-directed RNA polymerase [Stenotrophomonas maltophilia EPM1]
Length = 811
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 186/369 (50%), Gaps = 49/369 (13%)
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIE 388
+DAL+ VG +LI+L +E L A +G+R+ +I
Sbjct: 177 KDALL-VGMKLIELFVEAT----------------------GLVELVTVAERGKRHLLIA 213
Query: 389 CDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ V L K + MPM+VPP W GG+ + ++RT +
Sbjct: 214 GNQKVLDWLTKAHDSAALYQPVLMPMVVPPRPWTTPRDGGYLTDIGGRADLVRTRNRAYK 273
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
RE + + V+QAL+ + +T W+VN +L V+ +W +GG +AGL ++E + LP
Sbjct: 274 RELALV----DMPNVYQALNAIQATAWKVNVPVLEVMRELWNAGGGVAGLPERELMDLPS 329
Query: 503 KP---NTDDE-------TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
+P TD + E K+WK + N+ S R K+++A K +
Sbjct: 330 RPALLETDPDYFKEHHADEFKEWKRDRAKVYEANARSVSTRLAAAQKIALAEKFAEYPAI 389
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+PHNLDFRGR YP+ P L G D +G+L F +G PLG+ G +WL IH+AN + GVD
Sbjct: 390 YFPHNLDFRGRCYPLPPTLTPQGDDAAKGLLTFAQGVPLGEDGAYWLAIHVANCF--GVD 447
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN-LSEALRSPSPES 671
K+S+E RVA+ H + I DSA PL+G+R+W+ A+ PF LA C L +L
Sbjct: 448 KVSFEERVAWVREHEEQILDSALDPLDGQRFWMDADSPFCALAACFEWLGYSLNG---RD 504
Query: 672 TISHIPVHM 680
+SH+P+ +
Sbjct: 505 HVSHLPIAL 513
>gi|198414501|ref|XP_002124660.1| PREDICTED: similar to RNA polymerase [Ciona intestinalis]
Length = 1114
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/517 (27%), Positives = 245/517 (47%), Gaps = 45/517 (8%)
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKW----KHMTYA--PYFNNLPADMMAVITMHKLVG 232
V+SL W L + + + + +DKW KH P+ LP + I ++
Sbjct: 317 VESLHSTWKVELLRSFQQLKVSEEDKWTRYRKHRFSGVYPFLCVLPPETFVDI----IIQ 372
Query: 233 LLMTNAGEVRVVQAAC-QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKL 291
+M+ + + C ++G ++ + I K + NL + +D +
Sbjct: 373 FMMSMSASGNIASVLCYELGSSVYSHHLINQL-----KHDGYFENLRM----IYSDYTSM 423
Query: 292 IKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQP 351
+ L R + L + K+ G + +PW L VG +L+++++ T
Sbjct: 424 YTHRCNLSPRQSWLQLEDKI----GNISTRHRIEPWHNMWLFTVGLKLLEVMVSTLTFN- 478
Query: 352 PVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE--KTGRHMIIPYM 409
+D PA ++ K + G+ YG+ P L K +
Sbjct: 479 -LDWGSGVKLRNIPAVFNSYKVW-----GGKMYGMAVPHPGYVAMLSDAKHDFEFETGIL 532
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGST 467
PM+VPPL W ++GG+ P+ +R++ Q+ +TI +S + V +L+ LGS
Sbjct: 533 PMVVPPLPWVNPSQGGYLASPTKFVRSYRDVIGQEEDTID---QSDVTTVMDSLNILGSV 589
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKW-----KVKTA 522
W++N+R+L V ++ + G + P+ P+ + ++ K + A
Sbjct: 590 GWKINQRVLDVQLCLFRNNGDKKLSIPPPATSAPKPPDLSNVADLPPNKRGEMFEAARAA 649
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
K E +S D KLS+A +D+ ++PHNLDFRGR YP+ +LN++GSD+ R +
Sbjct: 650 TKLKLEMNSLHADGLYKLSIADYYRDDI-VWFPHNLDFRGRTYPVSRHLNYMGSDVSRSL 708
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
F +G PLG GL+WLKIHL NL G K R+ + +D+I DSADRPL+GR
Sbjct: 709 FLFADGKPLGGDGLNWLKIHLVNL-TGEKKKEGMAARLDYANEMMDEILDSADRPLDGRC 767
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW +++P+Q LA C L++ALR+ +PE + ++PV+
Sbjct: 768 WWKESDEPWQTLAACFVLADALRTRNPEDYVCNLPVY 804
>gi|83376032|gb|ABC17820.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1171
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 152/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|83376034|gb|ABC17821.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 155/289 (53%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE--KPNTD--------DETEIKKW 515
T W +NK IL I ++ + + +P PE +P ++ D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSXARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|397502338|ref|XP_003821818.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
paniscus]
Length = 1273
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 194/404 (48%), Gaps = 58/404 (14%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + +V +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G+ K
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL--TGLKKRE 855
Query: 616 --------------------------------------YEGRVAFTENHLDDIFDSADR- 636
++ F+ ++ R
Sbjct: 856 APAFPPPPHPPSSFLPRRPQVPCPPSSPGSSGNTCFSPVHPQLPFSIRGYGELIQPPPRL 915
Query: 637 -PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
P GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH
Sbjct: 916 SPTCGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVH 959
>gi|83376038|gb|ABC17823.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 152/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + +++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|83376028|gb|ABC17818.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 151/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYK 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G+ WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKMWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|83376040|gb|ABC17824.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1172
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 152/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + +++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + ISH+P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIH 867
>gi|242009042|ref|XP_002425302.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
gi|212509067|gb|EEB12564.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
Length = 1102
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 387 IECDPLVRKGLEKTG-RHMIIPY--MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQ 442
I+C P++ K ++ H+ IP PM+ PP W+ GG+ S +R Q
Sbjct: 510 IKCHPIISKLYQQCNLDHLYIPAKECPMVCPPKPWKSVTDGGYLLSTSDFVRVPKEPNSQ 569
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE 502
K QL F AL+TL +T W VNK +L V ++ +GG D+ DVP
Sbjct: 570 ILDFKPINSHQLYVTFDALNTLQNTPWIVNKEVLDVALEVFQNGG-----DDELDVPSFV 624
Query: 503 KPNTD-----------DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
P + E +++K K K++ + +++ C+ KLS+A ++
Sbjct: 625 TPVNNHNPLNITSEMSQEERFEEYK-KKKSSAMERQNQYALWCEALYKLSLANHYRNR-I 682
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
F+ PHN DFRGR YP+ P+L+H+G DL R +L F +G PLG G WLK H+ NL G
Sbjct: 683 FWLPHNYDFRGRVYPIPPHLSHIGGDLFRSLLIFAKGKPLGPKGFDWLKTHVINL-TGIK 741
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
K S R+ + L +I DSA++PL G +WW+ +E+P+Q LA C+ + + L+ +PE
Sbjct: 742 KKESLADRLKYANEMLPEILDSAEKPLTGNKWWVKSEEPWQTLAACMEIKKVLKHSNPEE 801
Query: 672 TISHIPVH 679
+SH PVH
Sbjct: 802 YVSHFPVH 809
>gi|170029524|ref|XP_001842642.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
gi|167863226|gb|EDS26609.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
Length = 1308
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 26/372 (6%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
+ S W + A+ VG L +L I G + PAF + K A +
Sbjct: 631 IQSIAWPRAAVNGVGKFLYNVLKNDLKINVNATARGSRQVKLVPAFYSLFRYEAKVAKEQ 690
Query: 382 RRYGVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
I+ P++ K + + + I +PML PP W GG+ S ++R
Sbjct: 691 -----IKPHPVLIKLYRNSQQDSLKFDINLVPMLCPPQPWSTAVNGGYILAKSDLIRLPQ 745
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
A QQ E I + P AL+ LGS W++N +L V+ ++ GG + D
Sbjct: 746 QAHQQSERIAEASPQDMYPTLDALNQLGSIPWKINDEVLDVVLAVFNKGGN-----SKLD 800
Query: 498 VPLPEKPNTDDETEIKKWKW----------KVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
VP P E I + + K T +++ + +S CD +LS+A +
Sbjct: 801 VPEPPASLAPIEETIPRNEMTGYDRFNLMRKKMTHRRKQGDMYSLWCDALYRLSLANHFR 860
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
+ F+ P N+DFRGR YP+ P+LNHLG DL R ++ F + PLG G +WLK+H NL
Sbjct: 861 GK-VFWLPQNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL- 918
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G + S + R+ + + +DDI DSADRPL GR WW +++P+Q LA C+ +++ R P
Sbjct: 919 TGLKKRDSVQDRLRYADEIMDDILDSADRPLTGRMWWSHSDEPWQTLACCMEIAKVHRCP 978
Query: 668 SPESTISHIPVH 679
+P +S P+H
Sbjct: 979 NPAKFMSGFPIH 990
>gi|294948962|ref|XP_002785982.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900090|gb|EER17778.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1162
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 20/308 (6%)
Query: 387 IECDPLVRKG---------LEKTGRHMIIPYM-PMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+ D L+R G LE + H++ + P++ P W+G+ GG+ + +R
Sbjct: 546 VAADALLRTGNGSSSSSSRLEGSPAHLLATKLQPLVCKPNPWQGFWEGGYLTHRTPFIRF 605
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
G+R I+ ++++ + LD LGST +++N+++L V++ +W + + +
Sbjct: 606 TGSRITSRDIRHVDLTRVQRI---LDYLGSTPFKINEKVLDVVEEVWRQDLRIGDIPPRA 662
Query: 497 DVPLPEKPNTDD---ETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKD-EEGF 552
D+ +P P + E +K K V A K N + S R LKL AR ++ G
Sbjct: 663 DLDIPNLPGEKEGLTEKAMKSAKLAVMKAYKDNEKLASVRPTFLLKLKSARAFRNVSTGL 722
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+PHNLDFRGR YP+ P+L H G DLCRG+L F E LG+ G WL++HLANL+ G D
Sbjct: 723 YFPHNLDFRGRCYPLPPHLQHQGDDLCRGLLMFNEKKRLGERGWWWLRLHLANLF--GHD 780
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP-SPES 671
KL + RV +T+ + I SA PL +WL A+DP+Q LA ++EALR P PE
Sbjct: 781 KLKLQDRVDWTDRQTESILVSAADPLGNAEFWLEADDPWQALAVIFEVAEALRHPGGPEE 840
Query: 672 TISHIPVH 679
+ I VH
Sbjct: 841 YSTGISVH 848
>gi|83376030|gb|ABC17819.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 151/289 (52%), Gaps = 25/289 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS--QLEPVFQALDTLGS 466
+PM+VPP W + GG+ + R+ E TPRS L P AL+ LGS
Sbjct: 586 LPMVVPPRPWVSDSSGGYL-----LHEVEMTRRPVEEAVETPRSPNTLLPTLDALNQLGS 640
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL-PE----------KPNTDDETEIKKW 515
T W +NK IL I ++ + + +P PE K D T +
Sbjct: 641 TPWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYT 700
Query: 516 KWKVKTAKKQ-----NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPY 570
++ A++Q +E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PY
Sbjct: 701 AFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPY 759
Query: 571 LNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDI 630
LNH+G DL R +L F EG PLG GL WLK+H NL +G K S R+ + E++L
Sbjct: 760 LNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLF 818
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA P G++WWL +E+P+Q L CI L AL S P + IS +P+H
Sbjct: 819 LDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISXLPIH 867
>gi|444509517|gb|ELV09312.1| DNA-directed RNA polymerase, mitochondrial [Tupaia chinensis]
Length = 1350
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+ ++ ++ E HS R D +LS+A+ ++ + F+ PHN+DFRGR YP P+LNHLGS
Sbjct: 896 YSFRSYRQVAREMHSLRADALYRLSLAQHLR-QRVFWLPHNMDFRGRTYPCPPHLNHLGS 954
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL R +LEF EG PLG GL WLKIHL NL G + S + R+AF +DDI DSADR
Sbjct: 955 DLARALLEFAEGRPLGPQGLDWLKIHLINL-TGLKKRESLQARLAFANEVMDDILDSADR 1013
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
P+ GR+WW+ A++P+Q LA C+ ++ A+RSP P + +SH+PVH
Sbjct: 1014 PMTGRKWWMEADEPWQTLACCMEVARAMRSPDPTAYVSHLPVH 1056
>gi|302423578|ref|XP_003009619.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261352765|gb|EEY15193.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1299
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 103/142 (72%), Gaps = 3/142 (2%)
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
++L +AR +++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L F +G LG+ GL
Sbjct: 648 VRLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLK 706
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLK+HLAN+Y G DK S R +F ++L +IFDSA +P+EG RWWL AEDP+QCLA C
Sbjct: 707 WLKVHLANVY--GFDKASLRERESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAAC 764
Query: 658 INLSEALRSPSPESTISHIPVH 679
L AL SP P +SH+PVH
Sbjct: 765 FELKAALESPEPTKFVSHLPVH 786
>gi|170582929|ref|XP_001896353.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
gi|158596464|gb|EDP34803.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
Length = 1129
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 185/375 (49%), Gaps = 33/375 (8%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
++G L +++E LG + P F + + + G V + +
Sbjct: 452 QLGSFLTSVVLEACQAHIKAGDLGKTIS--IPVFSYKDVVNEESSFDGEVLCVTKMVKIC 509
Query: 394 RKGLEKTGRH----MIIP--YMPMLVPPLNWRGYNRGGHFFLPSY-VMRTHGARQQRET- 445
+E +H M+ P +PM VPP W GG ++ S+ V+R H
Sbjct: 510 NAMMEVVSKHQFEWMVFPTDLLPMEVPPRPWLDSGEGGPYYGSSFNVLRPHPDYSMINVN 569
Query: 446 ----IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC---------LAGL 492
++ R Q PVF AL+ LG T W++N+ +L V +++ L+
Sbjct: 570 YEMKKRLKSRKQARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNTDEKFLEKLSIP 629
Query: 493 VDQEDVPLPEKP----NTD-DETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLSVAR 544
+ VP+P+ N + DE I W+ K A K+ +E +S C + +L++A
Sbjct: 630 IHPSRVPIPDYVVKFGNMEVDELPINDWREYSKAKYEAMKKRNELNSLWCWLLYRLTMAN 689
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
K ++PH++DFRGR YP+ PYLNH+G DL R +L F EG PLG GL WLK+H
Sbjct: 690 HFKGS-VLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCI 748
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
NL G + K S RVA+ + L I +SA+ PL G WW +E+P+Q L+ CI + AL
Sbjct: 749 NL-TGILKKESNFSRVAYADEMLPKILESANEPLSGEMWWTKSEEPWQTLSACIEIRNAL 807
Query: 665 RSPSPESTISHIPVH 679
++ +P + +SH+PV+
Sbjct: 808 QTGNPTTFVSHLPVY 822
>gi|312088786|ref|XP_003145994.1| DNA-dependent RNA polymerase [Loa loa]
Length = 1131
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 39/378 (10%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
++G L+ +++E + G+S P F H + +L G V + +
Sbjct: 454 QLGSFLMSVVLEACKLHVEAGSRGNSI--CIPVFSHKDVVNEESSLDGDVLCVTKMIKIC 511
Query: 394 RKGLEKTGRH----MIIPY--MPMLVPPLNWRGYNRGGHFF-LPSYVMRTHGARQQRETI 446
+E +H M+ P +PM VPP W GG ++ P V+R H TI
Sbjct: 512 NAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAHP---DYSTI 568
Query: 447 --------KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
++ R Q PVF AL+ LG T W++N +L V R++ A E +
Sbjct: 569 NVNYEMKKRLKSRKQARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEADEKFLEKL 628
Query: 499 PLPEKPN--------------TDDETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLS 541
+P P+ D+ + +W+ K A K+ +E +S C + +L+
Sbjct: 629 SIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRNELNSLWCWLLYRLT 688
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
+A K E ++PH++DFRGR YP+ PYLNH+G DL R +L F EG PLG GL WLK+
Sbjct: 689 MANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKL 747
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
H NL G + K S R + + L + +SA+ PL G WW +E+P+Q L+ C+ +
Sbjct: 748 HCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQTLSACMEIR 806
Query: 662 EALRSPSPESTISHIPVH 679
AL++ P + ISH+PV+
Sbjct: 807 NALQTGDPVTFISHLPVY 824
>gi|393906843|gb|EFO18076.2| DNA-dependent RNA polymerase [Loa loa]
Length = 1117
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 39/378 (10%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
++G L+ +++E + G+S P F H + +L G V + +
Sbjct: 440 QLGSFLMSVVLEACKLHVEAGSRGNSI--CIPVFSHKDVVNEESSLDGDVLCVTKMIKIC 497
Query: 394 RKGLEKTGRH----MIIPY--MPMLVPPLNWRGYNRGGHFF-LPSYVMRTHGARQQRETI 446
+E +H M+ P +PM VPP W GG ++ P V+R H TI
Sbjct: 498 NAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAHP---DYSTI 554
Query: 447 --------KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
++ R Q PVF AL+ LG T W++N +L V R++ A E +
Sbjct: 555 NVNYEMKKRLKSRKQARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEADEKFLEKL 614
Query: 499 PLPEKPN--------------TDDETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLS 541
+P P+ D+ + +W+ K A K+ +E +S C + +L+
Sbjct: 615 SIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRNELNSLWCWLLYRLT 674
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKI 601
+A K E ++PH++DFRGR YP+ PYLNH+G DL R +L F EG PLG GL WLK+
Sbjct: 675 MANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKL 733
Query: 602 HLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS 661
H NL G + K S R + + L + +SA+ PL G WW +E+P+Q L+ C+ +
Sbjct: 734 HCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQTLSACMEIR 792
Query: 662 EALRSPSPESTISHIPVH 679
AL++ P + ISH+PV+
Sbjct: 793 NALQTGDPVTFISHLPVY 810
>gi|224108381|ref|XP_002333403.1| predicted protein [Populus trichocarpa]
gi|222836443|gb|EEE74850.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 16/202 (7%)
Query: 61 NLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSILD 117
N G +N + G R Y S AEA++S E +SG++EVQEL + ++
Sbjct: 11 NSGSTNGNRC----GGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE------ 60
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DMCE KLAPNLP
Sbjct: 61 -EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLP 119
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEP DAIAK+Q + YAPYF+ LPAD M+VI MH+L ++MT
Sbjct: 120 YMKSLFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTG 179
Query: 238 A--GEVRVVQAACQIGEAIENE 257
G RVV AAC IG+AIE E
Sbjct: 180 GEHGCARVVTAACMIGDAIELE 201
>gi|9633997|ref|NP_052071.1| RNA polymerase [Yersinia phage phiYeO3-12]
gi|6598988|emb|CAB63592.1| RNA polymerase [Yersinia phage phiYeO3-12]
Length = 884
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/546 (28%), Positives = 257/546 (47%), Gaps = 89/546 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAREQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ AT + + K + YAP +L + A IT+ K++ +T+ + AA
Sbjct: 92 -------EYATKKGR-KPVAYAP-LQSLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEAKHF------KKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
GG++ P ++RTH + + E + M V++A++ +T W++NK++
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKKGLMRYEDVYMPE------VYKAVNIAQNTAWKINKKV 335
Query: 476 LGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDD--ETEIKKWKWKVKTAKKQNSEKHSQ 532
L V++ + C +A + E LP KP+ D E +K+WK + + + S+
Sbjct: 336 LAVVNEIVNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLDKARVSR 395
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L +G P+G
Sbjct: 396 RISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIG 454
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+ G +WLKIH AN GVDK+ + R+AF E H+DDI A P+ WW + PF
Sbjct: 455 EEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPI-NNTWWAEQDSPFC 511
Query: 653 CLATCI 658
LA C
Sbjct: 512 FLAFCF 517
>gi|358334198|dbj|GAA52636.1| DNA-directed RNA polymerase mitochondrial [Clonorchis sinensis]
Length = 1130
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 151/286 (52%), Gaps = 20/286 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS---------QLEPVFQ 459
+PML PP+ W + G+ +Y R RQ R + P ++ V
Sbjct: 500 LPMLCPPVPWTDLHDAGYLVSRNYATRL--MRQTRASPVAEPALDDDLDFDAKRIPSVLD 557
Query: 460 ALDTLGSTKWRVNKRILGVIDRMWASGG----CLAGLVDQEDVPLP-EKPNTDDETEIKK 514
AL+ L S WRVN+ IL + ++ +GG + +V Q +P P NT E +
Sbjct: 558 ALNCLASCPWRVNEPILNALIKVARAGGNRKLSIPEIVRQ-TMPSPLSITNTMSYEERRA 616
Query: 515 WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 574
+ + A+KQ E S +LS+A + + F++PH++DFRGR YP P+ +H+
Sbjct: 617 ADRQAREAQKQYDEMRSLWATELYRLSIANQYRGRV-FWFPHSMDFRGRVYPCPPHFHHM 675
Query: 575 GSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSA 634
GSD+ RG++ F +G PLG+ GL WLKIHL NL G + S R+ F E LDD+ DSA
Sbjct: 676 GSDVSRGLIVFAKGLPLGEHGLDWLKIHLVNL-TGLKKRCSNRDRLKFAEQLLDDVLDSA 734
Query: 635 DRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS-PESTISHIPVH 679
P GRRWW E+P+Q LA C L A+ PS P + +SH PVH
Sbjct: 735 RNPFNGRRWWQEQEEPWQVLACCKELMAAMEHPSGPHNYVSHFPVH 780
>gi|431922184|gb|ELK19275.1| DNA-directed RNA polymerase, mitochondrial [Pteropus alecto]
Length = 800
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
+T + +E HS R D +LS+A+ ++ F+ PHN+DFRGR YP P+ NHLGSDL
Sbjct: 333 RTMTFEAAEMHSLRTDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLA 391
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +LEF EG PLG GL WLKIHL NL G + S + R+AF E + DI DSADRP+
Sbjct: 392 RALLEFAEGRPLGPHGLDWLKIHLVNL-TGLKKRESLQARLAFAEEVMPDILDSADRPMT 450
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
GR+WW+ A++P+Q LA C+ ++ A+R+P P + ISH PVH
Sbjct: 451 GRKWWMEADEPWQALACCMEIARAVRAPDPAAHISHFPVH 490
>gi|324503368|gb|ADY41467.1| DNA-directed RNA polymerase [Ascaris suum]
Length = 827
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 161/298 (54%), Gaps = 32/298 (10%)
Query: 409 MPMLVPPLNWRGYNRGGHFF---------LPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
+PM +PP W Y GG + LP Y R + + R I+ RSQ PVF
Sbjct: 228 LPMKIPPRPWIDYGDGGPLYTKPSDVFRNLPDYP-RMIISDEVRRRIR--GRSQARPVFD 284
Query: 460 ALDTLGSTKWRVNKRILGVIDRMW------ASGGCLAGL---VDQEDVPLPEKPNT---- 506
AL+ LG+T WR+N +L ++ ++ + G L L + + + +P+ T
Sbjct: 285 ALNDLGATPWRINSAMLDILIEVFKMTPDLSKGDMLHRLAIPLRSDTIKIPDFVATFGEK 344
Query: 507 --DDETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
DE KW+ K A K+ +E +S + +L +A +++ ++ HN+DFR
Sbjct: 345 VRVDEIPSDKWREYSKNKYEAVKKRNELNSLWYWLMYRLVMAEHFRND-VLFFAHNMDFR 403
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GR YP+ PYL+H+G D+ R +L F EG LG G WLK+H NL G + + S E R+A
Sbjct: 404 GRVYPISPYLSHMGDDISRSLLRFAEGKQLGDDGFRWLKLHCINL-TGHLKRESIENRLA 462
Query: 622 FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
F + L I DSA+ PL G +WW+ +++P+Q LA CI + +ALRS P + +SH+P+H
Sbjct: 463 FFDKILPKILDSANNPLNGDQWWMRSDEPWQTLAACIEIRDALRSGDPSTFVSHLPIH 520
>gi|189427200|ref|YP_001949750.1| gp1 [Salmonella phage phiSG-JL2]
gi|189085853|gb|ACD75668.1| gp1 [Salmonella phage phiSG-JL2]
Length = 884
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 155/549 (28%), Positives = 255/549 (46%), Gaps = 89/549 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAREQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTARIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K + YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPVAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEA------KHFKKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
GG++ P ++RTH + + E + M V++A++ +T W++NK++
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKKGLMRYEDVYMPE------VYKAVNIAQNTAWKINKKV 335
Query: 476 LGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDD--ETEIKKWKWKVKTAKKQNSEKHSQ 532
L V++ + C +A + E LP KP+ D E +K+WK + + + S+
Sbjct: 336 LAVVNEIVNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGVYRLDKARVSR 395
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L +G P+G
Sbjct: 396 RISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIG 454
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+ G +WLKIH AN GVDK+ + R+AF E H+DDI A P+ WW + PF
Sbjct: 455 EEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPI-NNTWWAEQDSPFC 511
Query: 653 CLATCINLS 661
LA C +
Sbjct: 512 FLAFCFEYA 520
>gi|345489940|ref|XP_001599095.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Nasonia vitripennis]
Length = 622
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 151/275 (54%), Gaps = 6/275 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+P L PP W + GG+ + ++R TH QQ + + QL P +L+ LGS
Sbjct: 255 VPSLCPPRPWVSVHSGGYIVTKTDIVRVTHMGNQQWDRLINAQPKQLYPALDSLNQLGSI 314
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE---KPNTDDETEIKKWKWKVKTAKK 524
W VN +L V +++ + G + V Q L P D E KK K+
Sbjct: 315 PWAVNTSVLDVAIKVFQNDGSVKLNVPQPPSVLAHILSVPIDADPKEKKKINKAKIELKR 374
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ +E +S CD +LS+A ++E F+ PHN+DFRGR YP+ P+LNHLGSDL R +L
Sbjct: 375 KKNEMYSLWCDALYRLSLANHFRNEI-FWLPHNMDFRGRVYPIPPHLNHLGSDLARSMLV 433
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F PLG GL WLK+H NL G + S R+ + + +++I DSA+ PL G+ WW
Sbjct: 434 FALKKPLGPKGLDWLKLHTINL-TGFKKRESISERLKYADKIIENILDSAENPLTGKMWW 492
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+++P+Q LA C+ +++AL+S +P ++ P+H
Sbjct: 493 ATSDEPWQTLAACMEIAKALKSSNPTHYMTGFPIH 527
>gi|414090089|ref|YP_006990207.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
gi|409995511|gb|AFV51444.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
Length = 883
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/555 (27%), Positives = 246/555 (44%), Gaps = 101/555 (18%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E EA+E ++ + +AD K +A LP + WFE
Sbjct: 32 LAREQLALEHEAYEMGEARFRKIFERQLKAGEVADNAAAKPLVATLLPKMIERIHAWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ + + K T + + + +A IT+ ++G L T+A + V AA
Sbjct: 92 V----------SAKRGKRPTAFKFLQEVKPEAIAYITIKTVLGTL-TSAEQTTVQAAASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
+G AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 VGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK LQ V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFLQVVEADMLSKGLMGGEAWSS-WHKEDSIHVGVRCIEMLIEATGLVVLERQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D A +L S +A+ R + P+ Y P +VPP W
Sbjct: 238 GAD---AETLSLASEYADAIATRAGALAGISPM---------------YQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
GG++ P ++RTHG A + E + M V++A++ ST W++NK+
Sbjct: 280 TVTGGGYWANGRRPLALVRTHGKKALMRYEDVYMPE------VYKAVNLAQSTAWKINKK 333
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAKKQN 526
+L V + + C ED+P LP KP+ DE + WK +++
Sbjct: 334 VLAVANEITKWKHCPV-----EDIPAIEREELPVKPDDIDENPEALTNWKRAAAAVYRKD 388
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 389 KARKSRRLSLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLA 447
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+G +GK G +WLKIH AN GVDK+ + R+ F E++ + I SA PLE WW
Sbjct: 448 KGKAIGKEGFYWLKIHGAN--CAGVDKVPFPERIKFIEDNHEHIMASAKNPLE-YTWWAE 504
Query: 647 AEDPFQCLATCINLS 661
+ PF LA C +
Sbjct: 505 QDSPFCFLAFCFEYA 519
>gi|17570792|ref|NP_523301.1| RNA polymerase [Enterobacteria phage T3]
gi|133452|sp|P07659.1|RPOL_BPT3 RecName: Full=DNA-directed RNA polymerase
gi|15562|emb|CAA26719.1| unnamed protein product [Enterobacteria phage T3]
gi|15683|emb|CAA35121.1| 1 [Enterobacteria phage T3]
gi|17384276|emb|CAC86264.1| RNA polymerase [Enterobacteria phage T3]
Length = 884
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 253/546 (46%), Gaps = 89/546 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L + Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAKEQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPSAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEAKHF------KKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
GG++ P ++RTH + + E + M V++A++ +T W++NK++
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKKGLMRYEDVYMPE------VYKAVNLAQNTAWKINKKV 335
Query: 476 LGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDD--ETEIKKWKWKVKTAKKQNSEKHSQ 532
L V++ + C +A + E LP KP+ D E +K+WK + + + S+
Sbjct: 336 LAVVNEIVNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLDKARVSR 395
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L +G P+G
Sbjct: 396 RISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIG 454
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+ G +WLKIH AN GVDK+ + R+AF E H+DDI A P+ WW + PF
Sbjct: 455 EEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPI-NNTWWAEQDSPFC 511
Query: 653 CLATCI 658
LA C
Sbjct: 512 FLAFCF 517
>gi|147770014|emb|CAN63269.1| hypothetical protein VITISV_026360 [Vitis vinifera]
Length = 798
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 84/99 (84%)
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+LEF EG LGK+ LHWL IHL NLYAGG+DKLSYEG VAF ENHL+DIFDS DRPLEG
Sbjct: 674 SILEFVEGRLLGKSSLHWLNIHLENLYAGGLDKLSYEGWVAFIENHLEDIFDSTDRPLEG 733
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
R WL AEDPFQCLA CINLSEALRS SPE+TISH+PVH
Sbjct: 734 RHGWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVH 772
>gi|332850851|ref|XP_003316023.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
troglodytes]
Length = 1273
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 169/323 (52%), Gaps = 17/323 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H + SF ++
Sbjct: 676 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYH-VYSFRNV----QQI 729
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 730 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 789
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 790 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 849
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + +V +K E HS R + +LS+A+ ++D F+ P
Sbjct: 850 PQPPEAHLPHSAAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 908
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 909 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 967
Query: 616 YEGRVAFTENHLDDIFDSADRPL 638
R+AF E +D I DSAD+PL
Sbjct: 968 LRKRLAFAEEVMDHILDSADQPL 990
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH
Sbjct: 430 WWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVH 466
>gi|338826814|ref|YP_004678728.1| RNA polymerase [Enterobacteria phage K30]
gi|335335277|gb|AEH41021.1| RNA polymerase [Enterobacteria phage K30]
Length = 906
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 257/561 (45%), Gaps = 96/561 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQ-KLAPNLPYVKSLFLGWFEPLRDAI---AK 196
L R Q+ +E EA+E + + +L + + A N+ K L L L I +
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 197 DQATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTN 237
+QA A+ K K Y P + + +++ +A++T+ ++G L T+
Sbjct: 91 EQANARGK-KPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTL-TD 148
Query: 238 AGEVRVVQAACQIGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A + + Q + Q+G+A+E+EAR I+ S KKN D
Sbjct: 149 ASKATIQQVSSQLGKALEDEARFGRIREQEASYFKKNVAD-------------------- 188
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAY 348
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T
Sbjct: 189 --QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGL 246
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
++ +++ D D+ + L E L R + P+ Y
Sbjct: 247 VEMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------Y 291
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ + P ++RTH ++ ++ + V++A++
Sbjct: 292 QPCVVPPKPWVETVGGGYWSVGRRPLALVRTHS----KKALRRYEDVHMPEVYKAVNLAQ 347
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKV 519
+T W+VNK++L V++ + C G DVP LP +P+ D E+ + W+
Sbjct: 348 NTPWKVNKKVLAVVNEIINWKHCPVG-----DVPAIEREELPPRPDDIDTNEVARKAWRK 402
Query: 520 KTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+ A +++ + S+R +E ++ A K + + ++P+N+D+RGR Y + + N G+D
Sbjct: 403 EAAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGND 461
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ +G+L +G P+G G +WLKIH AN GVDK+ + R+ F E + +I SA P
Sbjct: 462 MTKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEANILASAADP 519
Query: 638 LEGRRWWLGAEDPFQCLATCI 658
L WW + PF LA C
Sbjct: 520 L-NNTWWTQQDSPFCFLAFCF 539
>gi|405963522|gb|EKC29086.1| DNA-directed RNA polymerase, mitochondrial [Crassostrea gigas]
Length = 689
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 18/246 (7%)
Query: 450 PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW-ASGGCLAGL------VDQEDVPLPE 502
P + L PV +L+ LG+ W++N ++L V+ ++ + G L + + PL E
Sbjct: 204 PENSLHPVMDSLNILGTCGWKINTKMLDVVLELFRENAGAFLDLPPAKHTLQKPVFPLQE 263
Query: 503 -----KPNTDDETEIKKWK---WKV-KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
K + E+KK K W V KKQ +E HS C + L++A ++DE +
Sbjct: 264 TKELEKQYAQEVEELKKRKADLWTVFYNLKKQRAETHSLWCHLHRTLTIADSLRDE-VIW 322
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+PH+LDFRGR YP P+LN+ G D+ R + +F G PLG+ GL WLKIHL NL G +
Sbjct: 323 FPHSLDFRGRCYPFMPHLNYHGDDVRRSLFQFANGKPLGEKGLDWLKIHLINL-TGFAKR 381
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
S + R+ + DI DSAD PL+G +WW +++PFQ LA CI ++ A+RS P +
Sbjct: 382 SSNKERLHLANTLMSDIMDSADNPLKGGKWWQTSDEPFQTLAACIEVTAAMRSKDPTQFV 441
Query: 674 SHIPVH 679
S+ P H
Sbjct: 442 SYFPTH 447
>gi|281416282|ref|YP_003347522.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
gi|262410401|gb|ACY66666.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
Length = 906
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 256/561 (45%), Gaps = 96/561 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQ-KLAPNLPYVKSLFLGWFEPLRDAI---AK 196
L R Q+ +E EA+E + + +L + + A N+ K L L L I +
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 197 DQATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTN 237
+QA A+ K K Y P + + +++ +A++T+ ++G L T+
Sbjct: 91 EQANARGK-KPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTL-TD 148
Query: 238 AGEVRVVQAACQIGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A + + Q + Q+G+A+E+EAR I+ + KKN D
Sbjct: 149 ASKATIQQVSSQLGKALEDEARFGRIREQEATYFKKNVAD-------------------- 188
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAY 348
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T
Sbjct: 189 --QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGL 246
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
++ +++ D D+ + L E L R + P+ Y
Sbjct: 247 VEMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------Y 291
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ + P ++RTH + R + + V++A++
Sbjct: 292 QPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKKALRRYADV----HMPEVYKAVNLAQ 347
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKV 519
+T W+VNK++L V++ + C G DVP LP +P+ D E+ + W+
Sbjct: 348 NTPWKVNKKVLAVVNEIINWKHCPVG-----DVPAIEREELPPRPDDIDTNEVARKAWRK 402
Query: 520 KTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+ A +++ + S+R +E ++ A K + + ++P+N+D+RGR Y + + N G+D
Sbjct: 403 EAAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGND 461
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ +G+L +G P+G G +WLKIH AN GVDK+ + R+ F E + +I SA P
Sbjct: 462 MTKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADP 519
Query: 638 LEGRRWWLGAEDPFQCLATCI 658
L WW + PF LA C
Sbjct: 520 L-NNTWWTTQDSPFCFLAFCF 539
>gi|399219089|emb|CCF75976.1| unnamed protein product [Babesia microti strain RI]
Length = 1095
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 38/335 (11%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIE----CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGY 421
+F H+L+ F G+ +GVI C ++ + K+ Y+PM++ P W Y
Sbjct: 468 SFTHSLERFY-----GKTFGVIGIRDCCWSYIKDTIAKSLHTQ--SYLPMVIEPRPWTKY 520
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
N+GG + + +RT ++ R VF ++ + W++N R+L +I
Sbjct: 521 NKGGCYSSKAIFIRTPTGSYCDYSVYDFTR-----VFNIVNAISRVPWKINTRMLKLISL 575
Query: 482 MWASGGCLAGLVDQEDVPLPEKPNT--DDETEIKKWKWKVKTAKK---QNSEKHSQRCDI 536
W S L +P+ K + DD EI+ K K K QN+ ++ +
Sbjct: 576 AWDSSSARLNLWPH--LPIKSKISLLPDDLNEIENIKMYAKDPKVVEFQNARLSTETPLL 633
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
+ +LS+A++ + Y+PHN+DFRGR YPM +LNH+G DLCR +L F G PLG GL
Sbjct: 634 QRRLSIAKEFSNAAEIYFPHNIDFRGRLYPMSSHLNHMGDDLCRSLLLFARGKPLGDRGL 693
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD-----------IFDSADRPLEGRRW-- 643
WLKIH+ANL+ G DK+ ++ R+ + E+++ + + D + LE W
Sbjct: 694 FWLKIHIANLF--GQDKIQFQHRLDWVEDNIKNFERLVKIFNPSLIDIPTKLLEDDVWNF 751
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
W+ A+DP+Q + L AL+ PE IS IP+
Sbjct: 752 WISADDPWQAYSAITELLNALKLDDPEEYISCIPI 786
>gi|221056236|ref|XP_002259256.1| dna-dependent rna polymerase [Plasmodium knowlesi strain H]
gi|193809327|emb|CAQ40029.1| dna-dependent rna polymerase, putative [Plasmodium knowlesi strain H]
Length = 1348
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 172/323 (53%), Gaps = 24/323 (7%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
P F+H+ G YGVI EC + L+ + H+ + ++PM+ P W
Sbjct: 705 PVFIHSYIWNN-----GSWYGVIHMRECCANYLLNNAINS---HIPLNHLPMISKPKKWT 756
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG L + +R + + + LE + + +G+ +W++N+ IL +I
Sbjct: 757 -HAEGGMILLKNNFIRCN-----VKPLFNIDVCNLERIKNIVSQIGNVRWKINEEILNLI 810
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNT---DDETEIKKWKWKVKTAKKQNSEKHSQRCDI 536
+ +A G + + +++ LP P+ D +IKK+ + + N S+R
Sbjct: 811 EYAYAQGITIGNIPRKQNYDLPNGPSDMGRKDVEDIKKYYLLKEEISRLNKCLISERPTF 870
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
K++VA+ +K+ E Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F + +G GL
Sbjct: 871 LQKIAVAKTLKNCEMIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGL 930
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLKIHL+N + G DKL++E R+ + +++LD+I ++ P E +W AE P+Q L+
Sbjct: 931 FWLKIHLSNNF--GKDKLNFEERIKWVDDNLDNIKKLSENPFEHLDFWNMAEKPWQALSV 988
Query: 657 CINLSEALRSPSPESTISHIPVH 679
++L+ AL P P S+IP+
Sbjct: 989 SMDLTRALECPDPSKYRSNIPIQ 1011
>gi|410949947|ref|XP_003981678.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Felis catus]
Length = 875
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
LP + + E+++ ++ K E HS R D +LS+A+ ++ F+ PHN+D
Sbjct: 387 LPPDASPAQKAELRR---ELARCLKVAREMHSLRSDALYRLSLAQHLR-HRVFWLPHNMD 442
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGR YP P+ NHLGSDL R +LEF +G PLG GL WLK+HL NL G + + R
Sbjct: 443 FRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPRGLDWLKVHLVNL-TGLKKREPLQAR 501
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+ F + ++DI DSADRP+ GR+WW+ E+P+Q LA C+ ++ A+R+P P + ISH PVH
Sbjct: 502 LVFADEVMEDILDSADRPMTGRKWWMEVEEPWQALACCMEIARAVRAPDPAAYISHFPVH 561
>gi|9857985|gb|AAG00950.1|AF273674_1 DNA-dependent RNA polymerase [Plasmodium falciparum]
Length = 1503
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 25/322 (7%)
Query: 365 PAFVHTLKSFTKEALKGRR-YGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
P F+H+ K YGVI EC + L+ + H+ + Y+PM+ P W
Sbjct: 847 PVFIHSY------VWKNNNWYGVIHMRECCANYLLNNAI---NSHIPLNYLPMICKPKRW 897
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
+ GG L + +R + + L + + +G+ W++NK IL
Sbjct: 898 ENF-EGGMLLLKNSFIRCNIKPLFNLNV-----CNLNRIKNIVSEIGNVGWKINKEILHY 951
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDET--EIKKWKWKVKTAKKQNSEKHSQRCDI 536
I+ + G + + ++ LP+ N ++ EIKK+ + + N S+R
Sbjct: 952 IEYAYIHGITIGKIPLYKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTF 1011
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
KL+VA+ KD + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F E +G GL
Sbjct: 1012 LQKLAVAKTFKDNDIIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGL 1071
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLKIHLAN + G DKLS++ R+ + + ++++I +P + +W AE P+Q LA
Sbjct: 1072 FWLKIHLANTF--GKDKLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAV 1129
Query: 657 CINLSEALRSPSPESTISHIPV 678
I+L AL SP+ S IP+
Sbjct: 1130 AIDLKNALESPNASKYKSSIPI 1151
>gi|124804211|ref|XP_001347935.1| DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
gi|23496188|gb|AAN35848.1|AE014839_57 DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
Length = 1531
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 25/322 (7%)
Query: 365 PAFVHTLKSFTKEALKGRR-YGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
P F+H+ K YGVI EC + L+ + H+ + Y+PM+ P W
Sbjct: 875 PVFIHSY------VWKNNNWYGVIHMRECCANYLLNNAI---NSHIPLNYLPMICKPKRW 925
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
+ GG L + +R + + L + + +G+ W++NK IL
Sbjct: 926 ENF-EGGMLLLKNSFIRCNIKPLFNLNV-----CNLNRIKNIVSEIGNVGWKINKEILHY 979
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDET--EIKKWKWKVKTAKKQNSEKHSQRCDI 536
I+ + G + + ++ LP+ N ++ EIKK+ + + N S+R
Sbjct: 980 IEYAYIHGITIGKIPLYKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTF 1039
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
KL+VA+ KD + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F E +G GL
Sbjct: 1040 LQKLAVAKTFKDNDIIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGL 1099
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
WLKIHLAN + G DKLS++ R+ + + ++++I +P + +W AE P+Q LA
Sbjct: 1100 FWLKIHLANTF--GKDKLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAV 1157
Query: 657 CINLSEALRSPSPESTISHIPV 678
I+L AL SP+ S IP+
Sbjct: 1158 AIDLKNALESPNASKYKSSIPI 1179
>gi|194100420|ref|YP_002003793.1| gp1 [Klebsiella phage K11]
gi|193201359|gb|ACF15837.1| gp1 [Klebsiella phage K11]
Length = 906
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 252/560 (45%), Gaps = 94/560 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI---AKD 197
L R Q+ +E EA+E + + +L + + K L L L I ++
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNAAAKPLVLTLHPQLTKRIDDWKEE 91
Query: 198 QATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTNA 238
QA A+ K K Y P + + + + +A++T+ ++G L T+A
Sbjct: 92 QANARGK-KPRAYYPIKHGVASKLAVSMGAEVLKEKRGVSSEAIALLTIKVVLGTL-TDA 149
Query: 239 GEVRVVQAACQIGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQ 295
+ + Q + Q+G+A+E+EAR I+ + KKN D
Sbjct: 150 SKATIQQVSSQLGKALEDEARFGRIREQEAAYFKKNVAD--------------------- 188
Query: 296 EKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAYI 349
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T +
Sbjct: 189 -QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLV 247
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYM 409
+ +++ D D+ + L E L R + P+ +
Sbjct: 248 EMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------HQ 292
Query: 410 PMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
P +VPP W GG++ + P ++RTH + R + + V++A++ +
Sbjct: 293 PCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKKALRRYADV----HMPEVYKAVNLAQN 348
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKVK 520
T W+VNK++L V++ + C G DVP LP +P+ D E+ + W+ +
Sbjct: 349 TPWKVNKKVLAVVNEIVNWKHCPVG-----DVPAIEREELPPRPDDIDTNEVARKAWRKE 403
Query: 521 TAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
A +++ + S+R +E ++ A K + + ++P+N+D+RGR Y + + N G+D+
Sbjct: 404 AAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDM 462
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
+G+L +G P+G G +WLKIH AN GVDK+ + R+ F E + +I SA PL
Sbjct: 463 TKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPL 520
Query: 639 EGRRWWLGAEDPFQCLATCI 658
WW + PF LA C
Sbjct: 521 -NNTWWTQQDSPFCFLAFCF 539
>gi|428673226|gb|EKX74139.1| DNA-dependent RNA polymerase domain containing protein [Babesia
equi]
Length = 1194
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 157/663 (23%), Positives = 271/663 (40%), Gaps = 131/663 (19%)
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+K+P G Y +RQ IE + +A K + +++ E + ++P + +
Sbjct: 244 EKEPTLNPDGSQRRTYIHNVKRQFIIERLGFTEAFKSARVDASNLLEIRPPTDIPALNDI 303
Query: 183 FLGWFEPLRDAIAKDQA-------------------TAQDKWKHMTYAPYFNNLPADMMA 223
W + + I++D++ T + + M + Y ++ +M +
Sbjct: 304 CNQWVNDMSEFISRDRSRNEECIIPPQLNEKVLASETVRFALQLMCFPAYASDSKGNMGS 363
Query: 224 VITMHKLVGLLMTNAGEVRVVQAACQIGEAI-----------ENEARIQSFFKSTKKKNA 272
+ +++ +N +V +V A+ ++GE I E E IQS N
Sbjct: 364 F--LRRMIQQPASN--QVLLVNASVRLGEEISKIYVSTMKELEKEYNIQS-------SNF 412
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQ------EKLKKRVTSLIKKQKLQQVRGIVKG------ 320
+++++ +PL N E + + +K VT+L + + + +
Sbjct: 413 SEDDVHEKQDPLANTDENVDNKSLLENPGKKSSFTVTALSGASRARVISNVTNHAGDSLQ 472
Query: 321 --HVDSKP------WGQDALVKVGCRLIQLLMETAYIQP------------------PVD 354
H D P W +G L L+++ Y++ P+D
Sbjct: 473 TVHADGPPVDDFKRWNVRQNAAIGGYLFNALVKSCYVEVDIATALKQENSSFIDEDHPID 532
Query: 355 QLGDSPPD---------------IR-----------PAFVHTLKSFTKEALKG--RRYGV 386
D IR PAFVH + L+ R YG
Sbjct: 533 NATKRNSDETQKSKRNEKKIFSRIRKSRFDESKVEIPAFVHKI-------LRNGVRTYGT 585
Query: 387 IEC-DPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
+E + + K + R +I + +PM+ P W ++GG L Y +RT R
Sbjct: 586 LEMKECCMLKLRDVVARGLINLSALPMICEPKPWVTVSQGGSLILKHYFIRT----TNRA 641
Query: 445 TIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL---AGLVDQEDVPLP 501
+ + L VF ++ G W++N +L V+ ++W + + A L D+ +
Sbjct: 642 SFDIRV-FDLSNVFSITNSFGKVPWKINAGVLDVLKKLWDADSSVPMRAYLPDKSCLKEK 700
Query: 502 -EKPNTDDETEI--KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
E NT D EI K +W + K + + S+ E ++ +A E+ Y P ++
Sbjct: 701 GETKNTSDSKEIYNPKNRWANEEDKVRIANAISECSLFERRIYIAENFIHEQKLYLPASI 760
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGR YP+ PYLNH D CR +L F E PLG+ GL WLK+H++NLY G+DKL ++
Sbjct: 761 DFRGRLYPLSPYLNHACDDACRSLLTFSEVRPLGERGLFWLKVHVSNLY--GIDKLPFDD 818
Query: 619 RVAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
R+ + +N + I P + +W AE PFQ A+ L A+ S P +S I
Sbjct: 819 RIVWVDNQMSSIEKLVKNPFSDSSQDFWSKAEKPFQFFASACELVSAIHSKDPHKYLSSI 878
Query: 677 PVH 679
PV
Sbjct: 879 PVQ 881
>gi|426230933|ref|XP_004009513.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Ovis aries]
Length = 981
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E S R D +LS+A+ +++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +
Sbjct: 520 EMQSLRADALYRLSLAQHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQ 578
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G PLG GL WLKIHL NL G + S + R + + ++DI DSA+RP+ GR+WW+ A
Sbjct: 579 GRPLGPHGLDWLKIHLVNL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEA 637
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVH 679
++P+Q LA C+ +++ + SP P + ISH PVH
Sbjct: 638 DEPWQTLACCMEIAQVVHSPDPTTYISHFPVH 669
>gi|387941817|gb|AFK13398.1| DNA-directed RNA polymerase [Yersinia phage YpP-R]
Length = 883
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 144/551 (26%), Positives = 243/551 (44%), Gaps = 93/551 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 238 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
G GG++ P ++RTH A + E + M V++A++ +T W++NK+
Sbjct: 280 GITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKINKK 333
Query: 475 ILGVIDRMWASGGCLAG---LVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
+L V + + C +++E++P+ PE +T+ E + WK +++ +
Sbjct: 334 VLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARK 392
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +G P
Sbjct: 393 SRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKP 451
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
+GK G +WLKIH AN GVDK+ + R+ F E++ ++I A PLE WW + P
Sbjct: 452 IGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSP 508
Query: 651 FQCLATCINLS 661
F LA C +
Sbjct: 509 FCFLAFCFEYA 519
>gi|30387455|ref|NP_848264.1| RNA polymerase [Yersinia phage phiA1122]
gi|30314092|gb|AAP20500.1| RNA polymerase [Yersinia phage phiA1122]
gi|432142747|gb|AGB07325.1| RNA polymerase [Yersinia phage R]
Length = 883
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 144/551 (26%), Positives = 243/551 (44%), Gaps = 93/551 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 238 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
G GG++ P ++RTH A + E + M V++A++ +T W++NK+
Sbjct: 280 GITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKINKK 333
Query: 475 ILGVIDRMWASGGCLAG---LVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
+L V + + C +++E++P+ PE +T+ E + WK +++ +
Sbjct: 334 VLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARK 392
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +G P
Sbjct: 393 SRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKP 451
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
+GK G +WLKIH AN GVDK+ + R+ F E++ ++I A PLE WW + P
Sbjct: 452 IGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSP 508
Query: 651 FQCLATCINLS 661
F LA C +
Sbjct: 509 FCFLAFCFEYA 519
>gi|387941914|gb|AFK13493.1| DNA-directed RNA polymerase [Yersinia phage YpsP-G]
Length = 903
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 144/551 (26%), Positives = 243/551 (44%), Gaps = 93/551 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 52 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 111
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 112 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 160
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 161 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 198
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 199 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 257
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 258 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 299
Query: 420 GYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
G GG++ P ++RTH A + E + M V++A++ +T W++NK+
Sbjct: 300 GITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKINKK 353
Query: 475 ILGVIDRMWASGGCLAG---LVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEKH 530
+L V + + C +++E++P+ PE +T+ E + WK +++ +
Sbjct: 354 VLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARK 412
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +G P
Sbjct: 413 SRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKP 471
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
+GK G +WLKIH AN GVDK+ + R+ F E++ ++I A PLE WW + P
Sbjct: 472 IGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSP 528
Query: 651 FQCLATCINLS 661
F LA C +
Sbjct: 529 FCFLAFCFEYA 539
>gi|224116184|ref|XP_002331982.1| predicted protein [Populus trichocarpa]
gi|222832106|gb|EEE70583.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 95/128 (74%), Gaps = 2/128 (1%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
+G+ KY +L+RRQ+KIE EAWEQA KEY++LL DMCE KLAPNLPY+KSLFLGWFEP D
Sbjct: 5 LGSGKYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTD 64
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQI 250
AIAK+Q + YA YF+ LPAD M+VI MH+L +++T G RVV AAC I
Sbjct: 65 AIAKEQELIRTGKSRQGYASYFDLLPADKMSVIAMHQLAAMVVTGGEHGCARVVTAACMI 124
Query: 251 GEAIENEA 258
G+AIE +A
Sbjct: 125 GDAIEQDA 132
>gi|294658854|ref|XP_461193.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
gi|202953437|emb|CAG89581.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
Length = 1271
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 34/374 (9%)
Query: 336 GCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG----------RRYG 385
CR+ Q +++ + +L DS +I P+F+ + L G ++ G
Sbjct: 444 NCRIPQSFIDSDSFSQSL-RLMDSSQEIDPSFLSEKNAEFPAFLWGYLRNHDSPAYKKTG 502
Query: 386 VIECDPLVRKGLEKTGRHMI--IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR 443
VI+ P + + + + Y+PML PP W GG+ ++ T
Sbjct: 503 VIKIHPYLSEEFKSYESFFVDRSLYLPMLCPPKPWTSPVVGGYLNDLKPIINTDDISTSL 562
Query: 444 ETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL---VDQEDVP 499
+ ++ QL+ +++ L+ LGS W +N L + ++ + + ++ V
Sbjct: 563 FYLNKAHKTGQLKSLYEGLNVLGSLAWAINPSTLNIFNQAMSVNKEFLKIPPNFNELQVI 622
Query: 500 LPE---KPNTDDETEIKK--WKWKVKTAKKQNSEKH---SQRCDIELKLSVARKM-KDEE 550
LP+ KP+ E+E K WK++++ K E H SQR ++ L +A K+ +
Sbjct: 623 LPQEPKKPDYSSESEYNKAIWKYRIQVGKSL-QEYHAIKSQRVELNLIQQLANSFNKNGD 681
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
FY PHN+DFRGRAYPM L+H DL R +L F PLG G +WLK LA +Y G
Sbjct: 682 MFYLPHNVDFRGRAYPMVSLLSHYQDDLVRSLLMFWFAKPLGPNGFNWLKYQLAGVY--G 739
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR----- 665
DKLS + R+ F + +L+ I DSA+ P++G+ WW E P+Q L+ C +++ L+
Sbjct: 740 KDKLSMDERIDFIDKNLNLIVDSAENPIKGKMWWKSGEKPWQTLSLCFEINKVLQYCQND 799
Query: 666 SPSPESTISHIPVH 679
E + IP+H
Sbjct: 800 GNKVEEYLCRIPIH 813
>gi|345893809|ref|ZP_08844601.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045845|gb|EGW49744.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
Length = 898
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/557 (26%), Positives = 244/557 (43%), Gaps = 72/557 (12%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L RQ+ +E E Q + + E++ Y L EPL AI Q
Sbjct: 40 LINRQLALEEEMLTQGRARWLHTIQAAKERRNEAATSYGHMLLKRGVEPLAAAIRAFQEQ 99
Query: 199 -ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENE 257
AT + +H + + ++ A I++ K + + T ++ + + I A+E E
Sbjct: 100 AATGRAGRRHASVG-LLAGIEPEVAAFISLRKALDRMTTP--DITMQAVSVDIARALELE 156
Query: 258 ARIQSFF-KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
++ + + T + T +++G S +K ++ V S +
Sbjct: 157 KKVLALRDQDTPRYKMTKRHIQGHSS-------------QKYRRTVLSYAFGKS------ 197
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
G V +PW + + +G ++++L+ME+ I V RP + S
Sbjct: 198 ---GTVAFRPWSRPDCLHLGQKMLELIMESTGIFHLVR---------RPLPGRRISSAAD 245
Query: 377 EALKGRRYGVIECDPLVRKGLEK---TGRHMIIPYMPMLVPPLNWRGYNRGGHFFL---- 429
+ G Y +E P R L++ T M Y+P +VPP WRG GG++ L
Sbjct: 246 SS--GWVY-TLELSPSCRDWLQRHRETAGLMYPDYLPTIVPPKPWRGAGGGGYYSLDDTR 302
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW-ASGGC 488
P +++ QR+ + +L+ V A++ + +T W +N +L V R+W +GG
Sbjct: 303 PLSLVKLGDMDYQRDLDRRIQNGELKDVLMAVNAMQNTAWSINAPVLEVARRLWDVTGGD 362
Query: 489 LAGLVDQEDVPLPEKPN-----TDDET--------------EIKKWKWKVKTAKKQNSEK 529
+AGL ++ LP P TD T E+ WK ++N
Sbjct: 363 VAGLPKRDGWRLPLCPVCGADITDSATAYVKHDCLDTLAPEELADWKRAALRIHEKNVAN 422
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
+S+R + L++A + + E FYYP+ LDFRGR Y + YLN G+DL +G+L F EG
Sbjct: 423 NSRRLTVAKILTLAERFQREHHFYYPYQLDFRGRIYAVPTYLNPQGTDLAKGLLRFSEGK 482
Query: 590 PLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAE 648
PLG + WL IH +N + G DK+S + R ++ H + I A PL WW+ A+
Sbjct: 483 PLGDMKAVRWLAIHGSNTW--GNDKVSLDERHSWVLEHQEHILAQAADPL-ADGWWMEAD 539
Query: 649 DPFQCLATCINLSEALR 665
PF LA C + +R
Sbjct: 540 APFCFLAFCFEWAGYVR 556
>gi|156098707|ref|XP_001615369.1| DNA-dependent RNA polymerase [Plasmodium vivax Sal-1]
gi|148804243|gb|EDL45642.1| DNA-dependent RNA polymerase, putative [Plasmodium vivax]
Length = 1306
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 165/319 (51%), Gaps = 18/319 (5%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYN 422
P FVH+ G YGVI L H+ + ++PM+ P W ++
Sbjct: 675 PVFVHSYV-----WRNGSWYGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKW-THS 728
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM 482
GG L + +R + + + LE + + +G+ +W VN+ IL +I+
Sbjct: 729 EGGMLLLKNNFIRCNV-----KPLFNIDVCNLERIKSVVSQMGNVRWEVNEEILHLIEYA 783
Query: 483 WASGGCLAGLVDQEDVPLPEKPN---TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
+ G + + +++ LP P+ + +IKK+ + + N S+R K
Sbjct: 784 YNKGITIGNIPRKQNYSLPSGPSHTAKQNVEDIKKYYLLREEISRLNKCLISERPTFLQK 843
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
+++A+ +K+ + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F + +G GL WL
Sbjct: 844 IAIAKTLKNCKVIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFHDREEIGPRGLFWL 903
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KIHLAN + G DKL++E R+ + +++L +I ++ P + +W AE P+Q L+ ++
Sbjct: 904 KIHLANNF--GKDKLTFEQRINWVDSNLGNIKRLSENPFQHVDFWSTAEKPWQALSVSMD 961
Query: 660 LSEALRSPSPESTISHIPV 678
L+ AL P P S+IPV
Sbjct: 962 LTRALECPDPSKYRSNIPV 980
>gi|70937775|ref|XP_739650.1| DNA-dependent RNA polymerase [Plasmodium chabaudi chabaudi]
gi|56516804|emb|CAH79196.1| DNA-dependent RNA polymerase, putative [Plasmodium chabaudi
chabaudi]
Length = 485
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 152/281 (54%), Gaps = 12/281 (4%)
Query: 403 HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
H+ + Y+PM+ P W ++GG L + + R + + + + +
Sbjct: 23 HVPLNYLPMICKPKKWED-DQGGMLLL-----KNNFIRYNIKPLFNLNVCNMTRIKNIVS 76
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE----KPNTDDETEIKKWKWK 518
+G+ W+VNK IL I+ + +G + + ++ LP K N ++ EIKK+
Sbjct: 77 EIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYNLPYNIDFKNNNNNNEEIKKYYLL 136
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
+ + N S+R KL+VA+ K+ E Y+PHN+DFRGR YP+ P+L+H+G D+
Sbjct: 137 KEEIARLNKCLISERPTFLQKLAVAKTFKENEKIYFPHNIDFRGRMYPLSPHLHHMGDDI 196
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
CR ++ F + +G GL+WLKIHLAN + G DKL+++ R+ + +N++D+I D P
Sbjct: 197 CRSLIVFSDDKEIGPNGLYWLKIHLANNF--GKDKLNFKKRIEWVDNNIDNIKKLRDNPF 254
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+ +W A++P+Q L+ I+L A+ P S+IP+
Sbjct: 255 DNLEFWGLADNPWQALSVSIDLINAINCSDPSKYKSNIPIQ 295
>gi|268570220|ref|XP_002640721.1| Hypothetical protein CBG19789 [Caenorhabditis briggsae]
Length = 1030
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 26/295 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLP--SYVMRTHGARQQRETIKMTPR----SQLEPVFQALD 462
+PM VPP W GG + + + R +M R +Q PVF AL+
Sbjct: 519 LPMTVPPRPWIDRGTGGPLYTAGQDIIRNMFEFKSVRLNDEMRQRIQSPAQGRPVFDALN 578
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------------- 508
LGST W +N+ +L + ++ GC E + +P + +T D
Sbjct: 579 QLGSTPWVINESMLDTLKTVFGQSGCKESEPLLEKLGIPMRHDTFDVPDFVREFGNVKKE 638
Query: 509 ETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
+ +++K++ K A K +E +S C ++ ++ +A + + ++PHN+DFRGR Y
Sbjct: 639 DVDVEKFRRYAKKKAEAVKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGRVY 697
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+ PYL+H+G D+ R +L+F + PLG G WLK+H NL G + + S R+ E
Sbjct: 698 PLSPYLSHMGDDVNRCILKFAKSQPLGSHGFDWLKLHCVNL-TGTMKRASVADRMVEAER 756
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI-SHIPVH 679
+ I DSA PL G +WW+ +++P+Q LA C+ + A++ S ++ S +PVH
Sbjct: 757 LIPSILDSARNPLNGEKWWMSSDEPWQTLAACVEIENAMKYGSDVASFPSQLPVH 811
>gi|26325937|dbj|BAB22998.2| unnamed protein product [Mus musculus]
Length = 462
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 98/141 (69%), Gaps = 2/141 (1%)
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
+LS+A ++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL W
Sbjct: 8 RLSLAHDLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDW 66
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LKIHL NL G S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+
Sbjct: 67 LKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCM 125
Query: 659 NLSEALRSPSPESTISHIPVH 679
++ A+RSP P + ISH+PVH
Sbjct: 126 EVAHAVRSPDPAAYISHLPVH 146
>gi|193203366|ref|NP_001122532.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
gi|148879471|emb|CAN99761.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
Length = 1156
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 155/297 (52%), Gaps = 28/297 (9%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSY------VMRTHGARQQRET-IKMTPRSQLEPVFQAL 461
+PM+VPP W GG + S +M R E ++T ++Q PVF AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLA--GLVDQEDVPL-------PE---------K 503
+ LGST W +N+ +L V+ ++ G GL+++ ++P+ P+ K
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 504 PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
D + + + K A K +E +S C ++ ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGR 716
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
YP+ PYL+H+G D+ R +L+F + LG+ G WLK+H NL G + + S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI-SHIPVH 679
E + + DSA PL G++WW+ +++P+Q LA C+ + A R S + S +P+H
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIH 832
>gi|193203364|ref|NP_001122531.1| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
gi|148879470|emb|CAD21670.3| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
Length = 1138
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 155/297 (52%), Gaps = 28/297 (9%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSY------VMRTHGARQQRET-IKMTPRSQLEPVFQAL 461
+PM+VPP W GG + S +M R E ++T ++Q PVF AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLA--GLVDQEDVPL-------PE---------K 503
+ LGST W +N+ +L V+ ++ G GL+++ ++P+ P+ K
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 504 PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGR 563
D + + + K A K +E +S C ++ ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGR 716
Query: 564 AYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
YP+ PYL+H+G D+ R +L+F + LG+ G WLK+H NL G + + S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI-SHIPVH 679
E + + DSA PL G++WW+ +++P+Q LA C+ + A R S + S +P+H
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIH 832
>gi|9627432|ref|NP_041960.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|251784243|ref|YP_002998547.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253774277|ref|YP_003037108.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254287609|ref|YP_003053357.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|12643995|sp|P00573.2|RPOL_BPT7 RecName: Full=DNA-directed RNA polymerase
gi|2781155|pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781156|pdb|4RNP|B Chain B, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781157|pdb|4RNP|C Chain C, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|5107544|pdb|1CEZ|A Chain A, Crystal Structure Of A T7 Rna Polymerase-T7 Promoter
Complex
gi|7245970|pdb|1QLN|A Chain A, Structure Of A Transcribing T7 Rna Polymerase Initiation
Complex
gi|27065076|pdb|1H38|A Chain A, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065077|pdb|1H38|B Chain B, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065078|pdb|1H38|C Chain C, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065079|pdb|1H38|D Chain D, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065724|pdb|1MSW|D Chain D, Structural Basis For The Transition From Initiation To
Elongation Transcription In T7 Rna Polymerase
gi|46015618|pdb|1S0V|A Chain A, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015619|pdb|1S0V|B Chain B, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015620|pdb|1S0V|C Chain C, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015621|pdb|1S0V|D Chain D, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|47169080|pdb|1S76|D Chain D, T7 Rna Polymerase Alpha Beta Methylene Atp Elongation
Complex
gi|47169084|pdb|1S77|D Chain D, T7 Rnap Product Pyrophosphate Elongation Complex
gi|431189|emb|CAA24390.1| unnamed protein product [Enterobacteria phage T7]
gi|37956644|gb|AAP33914.1| gene 1 [Enterobacteria phage T7]
gi|45861229|gb|AAS78492.1| T7 RNA polymerase [Cloning vector pPRCG]
gi|45861242|gb|AAS78503.1| T7 RNA polymerase [Cloning vector pTCCR-Auto]
gi|71534851|gb|AAZ32820.1| protein 1 [Enterobacteria phage T7.1]
gi|125743113|gb|ABN54763.1| T7 RNA polymerase [Expression vector pR6K-lys-Gm]
gi|125743121|gb|ABN54770.1| T7 RNA polymerase [Expression vector pUC19-T7pol-lacI-lys]
gi|125743124|gb|ABN54772.1| T7 RNA polymerase [Expression vector pBT20-Dbla-T7pol]
gi|194021543|gb|ACF32352.1| T7 DNA-directed RNA polymerase [Enterobacteria phage DE3]
gi|226440714|gb|ACO57213.1| RNA polymerase [Enterobacteria phage T7]
gi|242376516|emb|CAQ31221.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253325321|gb|ACT29923.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976916|gb|ACT42586.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|265524972|gb|ACY75835.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|283825308|gb|ADB43112.1| T7 RNA polymerase [Expression vector pCAGGS-T7]
gi|299008115|gb|ADJ00046.1| T7 RNA polymerase [T7RNA polymerase vector pGemT7cat]
gi|299008117|gb|ADJ00047.1| T7 RNA polymerase [Mariner mini-transposon delivery vector
pMaT7cat]
Length = 883
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 385
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 386 RKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 444
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 445 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 501
Query: 644 WLGAEDPFQCLATCINLS 661
W + PF LA C +
Sbjct: 502 WAEQDSPFCFLAFCFEYA 519
>gi|150261381|pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps.
gi|150261384|pdb|2PI5|A Chain A, T7 Rna Polymerase Complexed With A Phi10 Promoter
Length = 878
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 27 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 86
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 87 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 135
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 136 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 173
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 174 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 232
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 233 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 271
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 272 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 325
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 326 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 380
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 381 RKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 439
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 440 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 496
Query: 644 WLGAEDPFQCLATCINLS 661
W + PF LA C +
Sbjct: 497 WAEQDSPFCFLAFCFEYA 514
>gi|385663996|gb|AFI71020.1| T7* RNAP [Cloning vector SBa_000560]
Length = 885
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 34 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 93
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 94 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 142
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 143 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 180
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 181 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 239
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 240 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 278
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 279 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 332
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 333 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 387
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 388 RKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 446
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 447 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTW 503
Query: 644 WLGAEDPFQCLATCINLS 661
W + PF LA C +
Sbjct: 504 WAEQDSPFCFLAFCFEYA 521
>gi|385867953|gb|AFI93668.1| T7 RNA polymerase [Binary vector pVCPGUS(I)23010]
gi|385867959|gb|AFI93673.1| T7 RNA polymerase [Binary vector pVCPGUS23010]
Length = 884
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 33 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 92
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 93 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 141
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 142 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 179
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 180 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 238
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 239 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 277
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 278 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 331
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 332 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 386
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 387 RKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 445
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 446 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 502
Query: 644 WLGAEDPFQCLATCINLS 661
W + PF LA C +
Sbjct: 503 WAEQDSPFCFLAFCFEYA 520
>gi|216012|gb|AAA32569.1| RNA polymerase [Enterobacteria phage T7]
Length = 883
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 385
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 386 RKDRARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 444
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 445 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 501
Query: 644 WLGAEDPFQCLATCINLS 661
W + PF LA C +
Sbjct: 502 WAEQDSPFCFLAFCFEYA 519
>gi|194100364|ref|YP_002003938.1| gp1 [Enterobacteria phage 13a]
gi|193201411|gb|ACF15888.1| gp1 [Enterobacteria phage 13a]
Length = 883
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 244/554 (44%), Gaps = 99/554 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+ V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSVDNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAG---LVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNS 527
NK++L V + + C +++E++P+ PE +T+ + + WK +++
Sbjct: 331 NKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDTNPDA-LTAWKRAAAAVYRKDK 389
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
+ S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +
Sbjct: 390 ARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAK 448
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+GK G +WLKIH AN GVDK+ + R+ F E++ ++I A PLE WW
Sbjct: 449 GKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQ 505
Query: 648 EDPFQCLATCINLS 661
+ PF LA C +
Sbjct: 506 DSPFCFLAFCFEYA 519
>gi|448106266|ref|XP_004200703.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|448109383|ref|XP_004201334.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382125|emb|CCE80962.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382890|emb|CCE80197.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
Length = 1253
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 151/291 (51%), Gaps = 20/291 (6%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGS 466
Y+PML P W + GG+ ++ + +K RS L P F+ LD L S
Sbjct: 515 YLPMLSFPKAWISPSEGGYLNDLKPLVSSEEQSTALLYLKEADRSGSLLPAFKCLDILSS 574
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQED--VPL------PEKPNTDDETEIKKWKWK 518
T W +N+ +L VI+++ + + D +P+ PEK N E + + +K
Sbjct: 575 TPWAINQAVLNVINQVANIKEGFLKIPPKVDHLIPMVAAKEFPEKQNYSCEKDYLRAVYK 634
Query: 519 VKTAKKQNSEKH----SQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNH 573
K KKQN + + QR + E+ L +A K+ + + PHN+DFRGR YPM +L+H
Sbjct: 635 YKQDKKQNLQDYHASKCQRMEFEIFLRLANAFGKNGDIMFIPHNMDFRGRVYPMVSFLSH 694
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
SD+ R +L F E PLG++G WLK HLA L+ G DK + E RV F + + + DS
Sbjct: 695 YQSDIVRSLLMFWEPKPLGESGFRWLKYHLAGLF--GKDKWTLEERVRFIDESISLVVDS 752
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEAL----RSPSPESTISHIPVHM 680
+PL+G WW A+ P+Q L+ C+ ++ L + + E + IP+H+
Sbjct: 753 GKKPLDGLMWWKKADKPWQALSLCMEITNVLSYIEKGHNIEDYLCRIPIHL 803
>gi|156341453|ref|XP_001620765.1| hypothetical protein NEMVEDRAFT_v1g176655 [Nematostella vectensis]
gi|156206078|gb|EDO28665.1| predicted protein [Nematostella vectensis]
Length = 417
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 98/141 (69%), Gaps = 2/141 (1%)
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KLSVA +D F+ P N+DFRGR YP+ P+ H+G DL RG+L+F EG PLG GL W
Sbjct: 6 KLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRW 64
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LKIHLANLY G K S + RV +T+ + ++ DSAD PL G RWW+ ++P+Q LATC+
Sbjct: 65 LKIHLANLY-GAKKKSSLDERVEYTDQMMPEVLDSADNPLTGARWWMHGDEPWQVLATCM 123
Query: 659 NLSEALRSPSPESTISHIPVH 679
+++A+RSP P +SH PVH
Sbjct: 124 EIAKAVRSPDPAQYVSHQPVH 144
>gi|133450|sp|P18147.1|RPOL_BPK11 RecName: Full=DNA-directed RNA polymerase
gi|14985|emb|CAA37330.1| unnamed protein product [Enterobacteria phage K11]
Length = 906
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 200/432 (46%), Gaps = 70/432 (16%)
Query: 247 ACQIGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ Q+G+A+E+EAR I+ + KKN D +L KRV
Sbjct: 158 SSQLGKALEDEARFGRIREQEAAYFKKNVAD----------------------QLDKRVG 195
Query: 304 SLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAYIQPPVDQLG 357
+ KK +Q V I KG + W D + VG +L++LL+E T ++ +++
Sbjct: 196 HVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMA 255
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLN 417
D D+ + L E L R + P+ + P +VPP
Sbjct: 256 DGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------HQPCVVPPKP 300
Query: 418 WRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
W GG++ + P ++RTH + R + + V++A++ +T W+VNK+
Sbjct: 301 WVETVGGGYWSVGRRPLALVRTHSKKALRRYADV----HMPEVYKAVNLAQNTPWKVNKK 356
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKVKTAK--KQN 526
+L V++ + C G DVP LP +P+ D E+ + W+ + A +++
Sbjct: 357 VLAVVNEIVNWKHCPVG-----DVPAIEREELPPRPDDIDTNEVARKAWRKEAAAVYRKD 411
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ S+RC E ++ A K + + ++P+N+D+RGR Y + + N G+D+ +G L
Sbjct: 412 KARQSRRCRCEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGSLTLA 470
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+G P+G G +WLKIH AN GVDK+ + R+ F E + +I SA PL WW
Sbjct: 471 KGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPL-NNTWWTQ 527
Query: 647 AEDPFQCLATCI 658
+ PF LA C
Sbjct: 528 QDSPFCFLAFCF 539
>gi|389583795|dbj|GAB66529.1| DNA-dependent RNA polymerase [Plasmodium cynomolgi strain B]
Length = 1486
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 170/325 (52%), Gaps = 41/325 (12%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
P F+H+ G YGVI EC + L+ + H+ + ++PM+ P W
Sbjct: 848 PVFIHSYM-----WRNGNWYGVIHMRECCANYLLNNAINS---HIPLNHLPMISKPKKWT 899
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
++ GG L + +R + + + LE + + +G+ +W++N IL +I
Sbjct: 900 -HSEGGMILLKNNFIRCN-----VKPLFNIDVCNLERIKNIVSQIGNIRWKINDEILYLI 953
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKP------NTDDETEIKKWKWKVKTAKKQNSEKHSQR 533
+ + +G + + +++ LP P N DD IKK+ + + N +
Sbjct: 954 EYAYMNGITIGNIPRKQNYVLPNSPLDMTKKNADD---IKKYYLLREEISRLN------K 1004
Query: 534 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK 593
C L +A+ +K+ E Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F + +G
Sbjct: 1005 C-----LIMAKTLKNCEVIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGP 1059
Query: 594 AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC 653
GL WLK+HLAN + G DKL++E R+++ + +L +I ++ P E +W AE P+Q
Sbjct: 1060 RGLFWLKVHLANNF--GKDKLNFEQRISWVDANLGNIKRLSENPFEHMEFWNLAEKPWQA 1117
Query: 654 LATCINLSEALRSPSPESTISHIPV 678
L+ I+L++A++ P P S+IPV
Sbjct: 1118 LSVAIDLTKAMQCPDPSKYRSNIPV 1142
>gi|211939287|pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 7nt Of Rna
gi|211939296|pdb|3E3J|C Chain C, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
gi|211939297|pdb|3E3J|B Chain B, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
Length = 889
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 143/557 (25%), Positives = 238/557 (42%), Gaps = 105/557 (18%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 38 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 97
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 98 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 146
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 147 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 184
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q
Sbjct: 185 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQ----- 238
Query: 361 PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLN 417
+ G+ IE P + + + + + P +VPP
Sbjct: 239 ---------------NAGVVGQDSETIELAPEYAEAIATRAGALAGISLMFQPCVVPPKP 283
Query: 418 WRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
W G GG++ P ++RTH A + E + M V++A++ +T W++N
Sbjct: 284 WTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKIN 337
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAKK 524
K++L V + + C ED+P LP KP D + WK +
Sbjct: 338 KKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYR 392
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 393 KDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLT 451
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE WW
Sbjct: 452 LAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TWW 508
Query: 645 LGAEDPFQCLATCINLS 661
+ PF LA C +
Sbjct: 509 AEQDSPFCFLAFCFEYA 525
>gi|37956858|gb|AAP34124.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/554 (25%), Positives = 243/554 (43%), Gaps = 99/554 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V AA
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAAASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +V P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVLPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGC---LAGLVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNS 527
NK++L V + + C +++E++P+ PE + + E I WK +++
Sbjct: 331 NKKVLAVANVITKWKHCPVEYIPAIEREELPMKPENIDMNPEALIA-WKRAAAAVYRKDK 389
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
+ S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +
Sbjct: 390 ARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAK 448
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE WW
Sbjct: 449 GKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLEN-TWWAEQ 505
Query: 648 EDPFQCLATCINLS 661
+ PF LA C +
Sbjct: 506 DSPFCFLAFCFEYA 519
>gi|317487306|ref|ZP_07946101.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316921496|gb|EFV42787.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 882
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 147/574 (25%), Positives = 244/574 (42%), Gaps = 88/574 (15%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD 203
RQI++E E ++ Y +A E+ N Y K L EP+ AI++ +A+
Sbjct: 28 RQIELEKEMADRGRDRYYTTVARNTERNAEANTSYGKMLLKRGIEPMARAISEFMESAKQ 87
Query: 204 --KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQ 261
+ + ++A I + K++ + RV + +G +E E ++
Sbjct: 88 GGAGRRHKAVGMLEGMDVQVVAFIALRKVLDTFSQSMPYQRV---SILVGREVEMEKKLT 144
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS-LIKKQKLQQVRGIVKG 320
+KEQ+ + R+T I K ++ R V
Sbjct: 145 E-----------------------------LKEQDPDRYRMTQRYIAGSKARKYRRTVLN 175
Query: 321 H-------VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
+ V+ +PW + + +G +LI+L ME+ I V V + K
Sbjct: 176 YAFGKSTTVEYEPWAEADCLHLGQKLIELAMESCGIFHLVQ-------------VPSQKV 222
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRH--MIIP-YMPMLVPPLNWRGYNRGGHF--F 428
K + Y +E P R+ +E+ H M+ P Y+P L+ P W G GG++
Sbjct: 223 KGKTMFQSTHYS-LEPTPSCREWVERHKDHASMMYPDYLPTLIEPKPWEGAGGGGYYSDA 281
Query: 429 LPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW-ASG 486
LP + G E + K +++ V A++ L +T W +N + V +W +
Sbjct: 282 LPRLSLVKTGNLGYLEALDKRIQAGEMDTVINAVNALQNTGWSINPTVFEVASYLWDETD 341
Query: 487 GCLAGLVDQEDVPLPEKPN-----TDDET--------------EIKKWKWKVKTAKKQNS 527
G +AGL ++ LP P TD + +WK + ++ N
Sbjct: 342 GGVAGLPPRDGYRLPPCPTCGADLTDTAAARVRHTCLDALPLEDFNEWKKEAFRIRELNI 401
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
QR + L++A + KDE F++P+ LDFRGR Y + YL G+DL +G+L F E
Sbjct: 402 SLFGQRIGVAKTLTMAARFKDEPRFFFPYQLDFRGRIYAVPSYLTPQGTDLAKGLLRFAE 461
Query: 588 GHPLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
G PLG + WL IH +N + G DK+S + R ++ H +I + A+ P WW
Sbjct: 462 GKPLGTMQAVRWLAIHGSNCF--GNDKVSLDDRHSWVLQHQQEILECAEDPFS-HAWWHE 518
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
A++PF LA C+ + +R +SHIPV M
Sbjct: 519 ADEPFCFLAFCLEWAGYVREGL--DFVSHIPVAM 550
>gi|3891671|pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 239/560 (42%), Gaps = 111/560 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRM--WASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKT 521
NK++L V + + W ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHSPV-------EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAA 383
Query: 522 AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 581
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G
Sbjct: 384 VYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKG 442
Query: 582 VLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
+L +G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE
Sbjct: 443 LLTLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN- 499
Query: 642 RWWLGAEDPFQCLATCINLS 661
WW + PF LA C +
Sbjct: 500 TWWAEQDSPFCFLAFCFEYA 519
>gi|37956752|gb|AAP34020.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 144/558 (25%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A + V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P ++P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVIPSK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYENVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPKDIDMNPEALTAWKRAAAAVY 385
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R ++E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 386 RKDKARKSRRINLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 444
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 445 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 501
Query: 644 WLGAEDPFQCLATCINLS 661
W PF LA C +
Sbjct: 502 WAEQNSPFCFLAFCFEYA 519
>gi|37956700|gb|AAP33969.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 144/558 (25%), Positives = 239/558 (42%), Gaps = 107/558 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A + V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P ++P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVIPSK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYENVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPKDIDMNPEALTAWKRAAAAVY 385
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R ++E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 386 RKDKARKSRRINLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 444
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 445 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TW 501
Query: 644 WLGAEDPFQCLATCINLS 661
W PF LA C +
Sbjct: 502 WAEQNSPFCFLAFCFEYA 519
>gi|37956803|gb|AAP34070.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 144/554 (25%), Positives = 243/554 (43%), Gaps = 99/554 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V AA
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAAASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +V P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVLPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAG---LVDQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNS 527
NK++L V + + C +++E++P+ PE + + E I WK +++
Sbjct: 331 NKKVLAVANVITKWKHCPVENIPAIEREELPMKPENIDMNPEALIA-WKRAAAAVYRKDK 389
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
+ S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L +
Sbjct: 390 ARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAK 448
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE WW
Sbjct: 449 GKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLEN-TWWAEQ 505
Query: 648 EDPFQCLATCINLS 661
+ PF LA C +
Sbjct: 506 DSPFCFLAFCFEYA 519
>gi|427781025|gb|JAA55964.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Rhipicephalus pulchellus]
Length = 492
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+E +S CD KLS+A +D F++PHN+DFRGR YP P+ NHLGSD+ RG+L F
Sbjct: 21 AEMYSLWCDALYKLSIANHFRDRV-FWFPHNMDFRGRVYPCPPHFNHLGSDVVRGILLFA 79
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
G PLG+ GL WLKIHL NL G + R+ F + +I DSAD P+ GRRWW
Sbjct: 80 RGEPLGENGLDWLKIHLVNL-TGLKKREPVSERLRFANEMMPEILDSADNPMTGRRWWTK 138
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+++P+Q LA C ++ A+RSP P I ++PVH
Sbjct: 139 SDEPWQTLACCKEVAAAVRSPDPTRHICYLPVH 171
>gi|443730014|gb|ELU15709.1| hypothetical protein CAPTEDRAFT_156688 [Capitella teleta]
Length = 601
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 25/283 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
+P ++PP+ W + G F ++R H +R+T+ TP ++ P AL+T+G+
Sbjct: 25 LPSVIPPVPWTSHKHGADIFSTVELIR-HADDVRRDTLLSTPLQKVLPTLDALNTVGACP 83
Query: 469 WRVNKRILGVIDRMWASGGC--LAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
W +NK++L V+ ++ +GG L D+PLP K ++ W +
Sbjct: 84 WIINKKVLDVMVEVFKTGGSEQLDVPCSIHDIPLPPKIHS----------WCPAAVWHRL 133
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM---------HPYLNHLGSD 577
+ S D +S R +K ++ P R + + P + GSD
Sbjct: 134 LLEGSIAVDFSSNVSKCRNVKQQKEKNSPVEKSLRSDVWTLLTSMSLKSTFPAVEVPGSD 193
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG-RVAFTENHLDDIFDSADR 636
L RG++ F +G PLG +GL WLKIH NL G+ K S R+A+ +DDI DSA+R
Sbjct: 194 LSRGIMVFGQGKPLGASGLDWLKIHCINL--TGLKKRSPNSERLAYANEVMDDILDSAER 251
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
PL GR WW A++P+Q LATC+ ++ A +SP P + +SH+PVH
Sbjct: 252 PLSGRGWWKDADEPWQTLATCMEIAAASQSPDPSAFVSHLPVH 294
>gi|68070003|ref|XP_676913.1| DNA-dependent RNA polymerase [Plasmodium berghei strain ANKA]
gi|56496821|emb|CAH94868.1| DNA-dependent RNA polymerase, putative [Plasmodium berghei]
Length = 845
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 19/320 (5%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYN 422
P FVH S+ + YGVI L H+ + Y+PM+ P W +
Sbjct: 224 PVFVH---SYIWK--NNNWYGVIHMRESCANFLLNNAINSHVPLNYLPMICKPKKWEN-D 277
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM 482
+GG L + +R + + + + S+++ + + +G+ W+VNK IL I+
Sbjct: 278 QGGMLLLKNNFIRYN--IKPLFNLNVCNMSRIKNI---VSEIGNVGWKVNKEILHYIEYA 332
Query: 483 WASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQ----NSEKHSQRCDIEL 538
+ +G + + ++ LP + + K K++ N S+R
Sbjct: 333 YMNGKTIGKIPLNKNYNLPYNIDLKKNNNNNEEIKKFYLLKEEITRLNKCLISERPTFLQ 392
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KL+VA+ K+ E Y+PHN+DFRGR YP+ P+L+H+G D+CR ++ F G +G GL+W
Sbjct: 393 KLAVAKTFKENEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPNGLYW 452
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LK+HLAN + G DKL+++ R+ + + ++++I ++ P E +W A++P+Q LA I
Sbjct: 453 LKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLSENPFENLEFWGLADNPWQALAVSI 510
Query: 659 NLSEALRSPSPESTISHIPV 678
+L AL S P S++P+
Sbjct: 511 DLINALNSSDPSKYKSNMPI 530
>gi|308470906|ref|XP_003097685.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
gi|308239803|gb|EFO83755.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
Length = 1135
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 151/295 (51%), Gaps = 26/295 (8%)
Query: 409 MPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRET-IKMTPRSQLEPVFQALD 462
+PM VPP W GG + + +M R E ++T SQ PVF AL+
Sbjct: 537 LPMTVPPRPWIDKGTGGPLYTVGQDIIRNMMEFKSVRLNDEMRQRITSPSQGRPVFDALN 596
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------------- 508
LGST W +N+ +L + ++ E + +P + +T D
Sbjct: 597 QLGSTPWVINEPMLDTLKTVFNKSNQKDSEELLEKLGIPMRQDTFDVPDFVTEFGKVKKE 656
Query: 509 ETEIKKWKWKVK---TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
+ +++K++ K A K +E +S C + ++ +A + + ++PHN+DFRGR Y
Sbjct: 657 DIDVEKFRGYAKRKAEAIKMRNESNSLWCWMLYRVVLADHFRGQ-TLFFPHNMDFRGRVY 715
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
P+ PYL+H+G D+ R +L+F + PLG G WLK+H NL G + + S R+ E
Sbjct: 716 PLSPYLSHMGDDVNRCILKFAKSQPLGSKGFDWLKLHCINL-TGTMKRSSVTDRMVEAER 774
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI-SHIPVH 679
L I DSA PL G +WW+ +++P+Q LA C+ + +A+R S S+ S +PVH
Sbjct: 775 LLPMILDSARDPLGGEKWWMSSDEPWQTLAACVEIEQAMRYGSDVSSFQSQLPVH 829
>gi|326633044|ref|YP_004306655.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
gi|301170517|emb|CBV65202.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
Length = 883
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 136/552 (24%), Positives = 239/552 (43%), Gaps = 95/552 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLA-----------DMCEQKLAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + D + + LP + + WF+
Sbjct: 32 LAREQLALEHESYEMGEVRFRKMFERQLKAGEIADNDATKPLITTLLPKMIARINSWFKE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+ V A
Sbjct: 92 VQAKCGKRPTAFQ----------FLQGIKPEAIAYITIKTTLARL-TSMDNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q + +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVIEADMLSKGLLGGESWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNK 473
W + GG++ P ++RTH ++ + + V++A++ +T WR+NK
Sbjct: 277 PWTSISGGGYWANGRRPLALVRTH----SKKALMRYADVYMPEVYKAVNIAQNTAWRINK 332
Query: 474 RILGVIDRMWASGGCLAGLV---DQEDVPL-PEKPNTDDETEIKKWKWKVKTAKKQNSEK 529
++L V + + C + ++E++P+ PE +T+ E + WK +++ +
Sbjct: 333 KVLAVANVVTKWKHCPVDYIPTIEREELPMKPEDIDTNPEA-LASWKRAAAAVYRKDKAR 391
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
S+R +E L A K + ++P+N+D+RGR Y + + N G+D+ +G+L +G
Sbjct: 392 KSRRMSLEFMLEQANKFANHRAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGK 450
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
P+GK G +WLKIH AN GVDK+ + R+ F E++ ++I A PLE WW +
Sbjct: 451 PIGKEGFYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENILACAKSPLEN-TWWSEQDS 507
Query: 650 PFQCLATCINLS 661
PF LA C +
Sbjct: 508 PFCFLAFCFEYA 519
>gi|254504157|ref|ZP_05116308.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|254505310|ref|ZP_05117458.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222436154|gb|EEE42836.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222440228|gb|EEE46907.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
Length = 573
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 11/245 (4%)
Query: 424 GGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
GG++ + +MR + P + + + L+ LG+T R+N+R+ V++ W
Sbjct: 10 GGYYMIQEDIMRCGIFKHSGSN----PNAISDDALRTLNALGATPKRINQRVFAVLNEAW 65
Query: 484 ASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKH-----SQRCDIEL 538
+G +AGL D +P + ++ ++ K + A ++ + S R
Sbjct: 66 MAGDQIAGLPSAHDPVVPGRKEDEEWEDMSKDEQSEHKASREEAHMEIVRLGSSRKQFLD 125
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KLSVAR+M D FY P LDFRGR YPM + G D+C+G++EF G PLG GL+W
Sbjct: 126 KLSVAREMADHPEFYEPFFLDFRGRFYPMCETFHSQGDDVCKGLIEFARGKPLGSRGLYW 185
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
L + AN + G DKL + R +T +HLD I + A PL+G RWW A++P+ LATC
Sbjct: 186 LAVRAANCF--GEDKLPLDERYQWTLDHLDQIIECAMDPLDGSRWWTQADEPWGFLATCF 243
Query: 659 NLSEA 663
L EA
Sbjct: 244 ELDEA 248
>gi|82706057|ref|XP_727223.1| DNA-dependent RNA polymerase [Plasmodium yoelii yoelii 17XNL]
gi|23482964|gb|EAA18788.1| DNA-dependent RNA polymerase-related [Plasmodium yoelii yoelii]
Length = 697
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 165/320 (51%), Gaps = 19/320 (5%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYN 422
P FVH S+ + YGVI L H+ + Y+PM+ P W +
Sbjct: 76 PVFVH---SYIWK--NNNWYGVIHMRESCANFLLNNAINSHVPLNYLPMICKPKKWEN-D 129
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM 482
+GG L + +R + + + + S+++ + + +G+ W+VNK IL I+
Sbjct: 130 QGGMLLLKNNFIRYN--IKPLFNLNVCDMSRIKNI---VSEIGNVGWKVNKEILHYIEYA 184
Query: 483 WASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQ----NSEKHSQRCDIEL 538
+ +G + + ++ LP + + + K K++ N S+R
Sbjct: 185 YMNGKTIGKIPLNKNYNLPNNIDLKNNNNNNEEIKKYYLLKEEITRLNKCLISERPTFLQ 244
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598
KL+VA+ K E Y+PHN+DFRGR YP+ P+L+H+G D+CR ++ F G +G GL+W
Sbjct: 245 KLAVAKTFKKNEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPNGLYW 304
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
LK+HLAN + G DKL+++ R+ + + ++++I + P E +W A++P+Q LA I
Sbjct: 305 LKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLKENPFENLEFWGLADNPWQALAVSI 362
Query: 659 NLSEALRSPSPESTISHIPV 678
+L AL S +P S+IP+
Sbjct: 363 DLINALNSSNPSKYKSNIPI 382
>gi|422935529|ref|YP_007005430.1| RNA polymerase, partial [Erwinia phage vB_EamP-L1]
gi|339507913|gb|AEJ81474.1| RNA polymerase [Erwinia phage vB_EamP-L1]
Length = 900
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 223/499 (44%), Gaps = 74/499 (14%)
Query: 188 EPLRDAIAKDQATAQDKWKHMTYA-----PYFNN----LPADMMAVITMHKLVGLLMTNA 238
+PL A+ +TA +W A P N L A+ A IT+ + L +
Sbjct: 87 KPLMSALHPKFSTAYTEWHETARAAKGRKPVAYNMTQGLSAESAAAITLKCALATLAKDV 146
Query: 239 GEVRVVQAACQIGEAIENEARI-------QSFFKSTKKKNATDNNLEGDSEPLTNDPEKL 291
+ V Q A IG IE+E R Q F+K +K
Sbjct: 147 -QCPVTQVANNIGMTIEDELRFGRIRDQEQKFYKERVEKALNQ----------------- 188
Query: 292 IKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQ 350
++ + KK +I+ + L+ +GI+K W + + G R+++LL+E T ++
Sbjct: 189 -RKGQVYKKAFMQVIEGKMLE--KGILKPEDTWTRWTKGETINTGIRMLELLIESTGLVE 245
Query: 351 PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMP 410
G++ D+ V K + +AL R + P+ Y P
Sbjct: 246 LERLHAGNAAKDVET--VRLTKEYA-DALSKRAGALAGIAPM---------------YQP 287
Query: 411 MLVPPLNWRGYNRGGHFFL---PSYVMRTH--GARQQRETIKMTPRSQLEPVFQALDTLG 465
+VPP W GG++ P ++RT A ++ E + M V +A++
Sbjct: 288 CVVPPKPWTEAVGGGYWAAGRKPLQLVRTRSLAALRRYEEVSMPE------VIKAVNIAQ 341
Query: 466 STKWRVNKRILGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDDETEI--KKWKWKVKTA 522
+T WRVNK++L V + + C +A + + +P +P D EI K WK +
Sbjct: 342 NTAWRVNKKVLDVANAITQWQHCPVADVPAMDRGEMPARPLDIDTNEIALKAWKKEASAF 401
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
+++ + S+R +E LS A K + + ++P N+D+RGR Y + P N G+D+ +G+
Sbjct: 402 YRKDKARVSRRLSMEFMLSQANKFANYKAIWFPQNMDWRGRVYAV-PMFNPQGNDMTKGL 460
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
L F +G P+G+ G +WLKIH AN GVDK+ + R+ F E++ +I + A PLE
Sbjct: 461 LTFAQGKPIGEDGFYWLKIHGAN--TAGVDKVPFPQRIKFVEDNHTNIMECAKAPLEN-T 517
Query: 643 WWLGAEDPFQCLATCINLS 661
WW + PF LA C +
Sbjct: 518 WWAEQDSPFCFLAFCFEYA 536
>gi|260943574|ref|XP_002616085.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
gi|238849734|gb|EEQ39198.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
Length = 995
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 174/381 (45%), Gaps = 40/381 (10%)
Query: 332 LVKVGCRLIQLLMETAYIQ------PPVDQLGDSPPDIRPAFVHTLKS--FTKEALKG-- 381
LV + RL L + A IQ V + P DI A T+ S +TK
Sbjct: 403 LVSLSQRLPMFLNDEAAIQFFVSIIKVVIEACKLPSDIPHAEHETVFSTDYTKANTDSPG 462
Query: 382 -RRYGVIECDPLVRKGLE------KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
+R GV++ P + K E +G ++ +PML PP W GG F V
Sbjct: 463 YKRVGVVKVHPFLPKQFETCLELFSSGSYL----LPMLHPPKEWVSPENGG--FFDDLVP 516
Query: 435 RTHGARQQRETIKMTP---RSQLEPVFQALDTLGSTKWRVNKRILGVI-DRMWASGGCL- 489
Q+ + M QL+ ++++L+ LGS W +N +LGV D M GG +
Sbjct: 517 LVKSIDQESTSFYMAQAHRTGQLDSIYESLNALGSVSWAINPSMLGVFNDAMSDKGGFMH 576
Query: 490 -AGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK-------KQNSEKHSQRCDIELKLS 541
G+ + + EKP D K + + + K+ E HS R EL +
Sbjct: 577 IPGIKAPDSCEMLEKPQRCDFKAEKDYLSALARHRSTREARLKKKKEAHSLRVYYELVNT 636
Query: 542 VARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+AR + K+ + +YP N+DFRGR YP +L+H DL R +L F E PLG G WL+
Sbjct: 637 LARSLEKNGDSIFYPQNIDFRGRVYPCVSFLSHHSEDLVRSLLMFWEAKPLGPKGYDWLQ 696
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
LANL++ LS E AF N+ + I +SA P+ + WW + P+QCLA C+ L
Sbjct: 697 YQLANLHSDHF--LSMEKSKAFVANNKEAIIESAKSPMSPQSWWRKGDSPWQCLAMCMEL 754
Query: 661 SEALR-SPSPESTISHIPVHM 680
E +S IP+HM
Sbjct: 755 KNVWEYEGKKEEYLSRIPIHM 775
>gi|15888521|ref|NP_354202.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
gi|15156227|gb|AAK86987.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
Length = 863
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 176/376 (46%), Gaps = 55/376 (14%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
W QD KVG +LI++ +E + V Q + + V T ++ A + R
Sbjct: 188 WSQDVKAKVGLKLIEIAVEQTGLFEIVRQ-SEGAHNTNIYVVATKETLDWLATENSRLAP 246
Query: 387 IECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR--THGARQ--- 441
+ P+ Y+P LVPP W RGG++ +R G RQ
Sbjct: 247 L--SPV---------------YLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLM 289
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
E++ M P+ V+ +++ + +T W +N R+ V+ +W + LA + +D+PLP
Sbjct: 290 DLESVDM-PK-----VYHSINAMQNTAWSINHRVYEVMASLWDNQSTLACIPQADDMPLP 343
Query: 502 EKP------------NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDE 549
EKP + + E +WK + T + N+ S+R L VA + KDE
Sbjct: 344 EKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRFKDE 403
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYA 608
E FY+PH +DFRGR Y + +LN G D G+L+F P+ + G WL IH A L+
Sbjct: 404 EEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLW- 462
Query: 609 GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN----LSEAL 664
GVDK S RV + + +I SA+ P + R+WL AE P+Q LA C ++E
Sbjct: 463 -GVDKCSMNERVEWVMANQREILASAENPYDN-RFWLTAEKPWQALAFCFEWQGYVAEGF 520
Query: 665 RSPSPESTISHIPVHM 680
+ SH+PV M
Sbjct: 521 ------AFHSHLPVQM 530
>gi|26988990|ref|NP_744415.1| DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
gi|24983810|gb|AAN67879.1|AE016420_1 DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
Length = 852
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 230/529 (43%), Gaps = 69/529 (13%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA----KDQAT 200
Q+++E E ++ +Q + Y + G + L +AI + +A
Sbjct: 21 QVRLEEEMTQRGVSRFQRNVEAARRMGAEDGTEYGSIIVSGRMKALAEAIKAWMDESEAG 80
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITM-HKLVGLLMTNAGEVRVVQ-AACQIGEAIENEA 258
+W + AD++A +T+ H L G+ + R +Q + I +++E+E
Sbjct: 81 VSSRWG--SAYKLLRGYDADVLAYLTLKHTLAGI-----SQPRTLQHVSVSIAQSVEDEM 133
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
R+ +KK ++L+ E+ KR + + + + R V
Sbjct: 134 RLSGIRDKERKKY-----------------DQLV---ERANKRSSQ--RHKHIYATR--V 169
Query: 319 KGHVDS-KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
+D+ W + + VG +L++LLM + + + T T++
Sbjct: 170 ASALDTWSNWSNNDRIHVGTKLLELLMNSVGL----------------IHIATNGEGTEK 213
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
ALK + + + RK M+ P Y PM+VPP NW GG+ +R
Sbjct: 214 ALKYVKPLESTLEWIARK---NNVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRM 270
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
R R ++ + V+ AL+ + +T W++N IL ++ +W G GL +E
Sbjct: 271 VKTRN-RAYLEELGNVDMPMVYTALNAIQATAWQINTPILNIMTTLWEQGATWCGLPPRE 329
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKT--AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
+P P KP D E+ + W+ A N E R ++ + L +A + Y+
Sbjct: 330 GIPQPVKPFDIDTNEVARAAWRKAAFKAHSDNLEIQGARINVSMSLDIANRYSPFRKIYF 389
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+ LDFRGR Y + P+LN G+D +G+L F G PLG+ G WL IH AN+ G DK
Sbjct: 390 PYQLDFRGRIYAV-PHLNPQGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKA 446
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRW--WLGA---EDPFQCLATCI 658
S E RV + +H +I A P + R W +GA + P+Q LA C+
Sbjct: 447 SLEDRVKWVHDHQAEILAIAADPFQARGWADHVGAQAIDKPWQFLAFCL 495
>gi|71033709|ref|XP_766496.1| DNA-directed RNA polymerase [Theileria parva strain Muguga]
gi|68353453|gb|EAN34213.1| DNA-directed RNA polymerase, putative [Theileria parva]
Length = 1225
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 153/321 (47%), Gaps = 34/321 (10%)
Query: 366 AFVHTL-----KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRG 420
AF H L K+F L+ R +++ V K L + + +PM+ P W
Sbjct: 608 AFRHVLLRQGVKTFG--VLEMRESCMLQLRDFVAKSL------VSLAALPMVCRPKKWIN 659
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID 480
GG L +R G++ + LE VF ++ W +N ++L +I
Sbjct: 660 ATTGGSILLKHNFIR--GSKLNEVKVY-----NLENVFDIVNKFSQVPWIINSQMLKLIK 712
Query: 481 RMWASGGCLAGLVDQEDVPLPEK-PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
+ S Q D+P+ + P + ++ + +S + S+ +
Sbjct: 713 HICNS---------QTDMPIKQHLPVNTNINLMENINTTISNITSLSSNELSELSLFLRR 763
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
+ +A +E Y P N+DFRGR YP+ PYLNH+ DLCR +L F E LG GL WL
Sbjct: 764 IKIADAFANERRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWL 823
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE--GRRWWLGAEDPFQCLATC 657
K+H +N+Y G DK+S+E RV + + H+ I + P + + +W+ A+ PFQ A+C
Sbjct: 824 KVHSSNMY--GNDKISFEDRVKWVDEHISIITELVKSPFKDFNQNFWVKADKPFQFFASC 881
Query: 658 INLSEALRSPSPESTISHIPV 678
+ L A+ S +PE ++H+P+
Sbjct: 882 VELVRAIESNNPEDYMTHLPI 902
>gi|325272855|ref|ZP_08139190.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
gi|324102004|gb|EGB99515.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
Length = 848
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 206/452 (45%), Gaps = 65/452 (14%)
Query: 219 ADMMAVITM-HKLVGLLMTNAGEVRVVQ-AACQIGEAIENEARIQSFFKSTKKKNATDNN 276
AD++A +T+ H L G+ + R +Q + I +++E+E R+ +KK
Sbjct: 93 ADVLAYLTLKHTLAGI-----SQPRTLQHVSVSIAQSVEDEMRLSGIRDKERKKY----- 142
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS-KPWGQDALVKV 335
++L+ E+ KR + + + + R V +D+ W + + V
Sbjct: 143 ------------DQLV---ERANKRSSQ--RHKHIYATR--VASALDTWSNWSNNDRIHV 183
Query: 336 GCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVR 394
G +L++LLM + IQ + G T++ALK + + + R
Sbjct: 184 GTKLLELLMNSVGLIQIATNGEG-----------------TEKALKYVKPLESTLEWIAR 226
Query: 395 KGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ 453
K M+ P Y PM+VPP NW GG+ +R R R ++
Sbjct: 227 K---NNVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKTRN-RAYLEELGNVD 282
Query: 454 LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIK 513
+ V+ AL+ + +T W++N IL ++ +W G GL +E +P P KP D E+
Sbjct: 283 MPMVYTALNAIQATAWQINTPILKIMTTLWEQGSTWCGLPPREGIPQPAKPFDIDTNEVA 342
Query: 514 KWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYL 571
+ W+ K N E R ++ + L +A + Y+P+ LDFRGR Y + P+L
Sbjct: 343 RAAWRKAAFKVHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-PHL 401
Query: 572 NHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF 631
N G+D +G+L F G PLG+ G WL IH AN+ G DK S E RV + +H +I
Sbjct: 402 NPQGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAEIL 459
Query: 632 DSADRPLEGRRW--WLGAE---DPFQCLATCI 658
A P + R W +GA+ P+Q LA C+
Sbjct: 460 AIAADPFQARGWADHVGAQAIDKPWQFLAFCL 491
>gi|281416168|ref|YP_003347903.1| RNA polymerase [Vibrio phage N4]
gi|237701475|gb|ACR16468.1| RNA polymerase [Vibrio phage N4]
Length = 883
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDSNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANILASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|261334540|emb|CBH17534.1| mitochondrial DNA-directed RNA polymerase,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1317
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 28/246 (11%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA----------------GLVDQEDVP 499
P+ +ALD + WR++K +L V + + G G + E
Sbjct: 758 PMMKALDAISRVPWRISKYMLHVQEAIVREGYGFGKIRPAFYPLHYCAKSRGDISYESTG 817
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQN------SEKHSQRCDIELKLSVARKMKDEEGFY 553
+ + DD+TE+ + + + +Q+ SE S R L AR + Y
Sbjct: 818 MDDD---DDKTEVYNLQQRREYELQQDEDWKNLSELRSNRIHYLQALRQARSLVQFSHIY 874
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+P+++DFRGR YP+ LNH GSD R +LE+ E PLGK GL+WLK+HLAN G+ K
Sbjct: 875 FPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMSK 932
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR-SPSPEST 672
LS++ RV + H+DD+ SA++PL G +WW A +P QCL C L++AL+ S PE+
Sbjct: 933 LSFDERVHYVNEHIDDVVCSAEQPLYGDKWWQEAAEPMQCLMACKELADALKCSQGPENF 992
Query: 673 ISHIPV 678
+S IPV
Sbjct: 993 LSRIPV 998
>gi|71755477|ref|XP_828653.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei
TREU927]
gi|70834039|gb|EAN79541.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1274
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 28/246 (11%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA----------------GLVDQEDVP 499
P+ +ALD + WR++K +L V + + G G + E
Sbjct: 715 PMMKALDAISRVPWRISKYMLHVQEAIVREGYGFGKIRPAFYPLHYCAKSRGDISYESTG 774
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQN------SEKHSQRCDIELKLSVARKMKDEEGFY 553
+ + DD+TE+ + + + +Q+ SE S R L AR + Y
Sbjct: 775 MDDD---DDKTEVYNLQQRREYELQQDEDWKNLSELRSNRIHYLQALRQARSLVQFSHIY 831
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+P+++DFRGR YP+ LNH GSD R +LE+ E PLGK GL+WLK+HLAN G+ K
Sbjct: 832 FPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMSK 889
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR-SPSPEST 672
LS++ RV + H+DD+ SA++PL G +WW A +P QCL C L++AL+ S PE+
Sbjct: 890 LSFDERVHYVNEHIDDVVCSAEQPLYGDKWWQEAAEPMQCLMACKELADALKCSQGPENF 949
Query: 673 ISHIPV 678
+S IPV
Sbjct: 950 LSRIPV 955
>gi|383389390|gb|AFH14406.1| RNA polymerase [Vibrio phage VP3]
Length = 883
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|325171278|ref|YP_004251249.1| RNA polymerase [Vibrio phage ICP3]
gi|323511984|gb|ADX87446.1| RNA polymerase [Vibrio phage ICP3]
Length = 883
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|323512084|gb|ADX87544.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_A]
Length = 883
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|241957393|ref|XP_002421416.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223644760|emb|CAX40751.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1211
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 182/395 (46%), Gaps = 66/395 (16%)
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQ-------DALVKVGCRLIQLLMETAYI---Q 350
++T++I+K K ++ H S G+ DA +K+ +L++L+ME I
Sbjct: 394 KLTTIIEKMKYS-FPSVLSQHASSNLKGEIFQFIHDDAYIKLTHQLVKLIMENCKIAMTN 452
Query: 351 PPVDQLGDS----PPDI------------RPAFVHTLKSFTKEALKGRRYGVIECDPLVR 394
++QL +S DI PAF K T K + Y +E P +
Sbjct: 453 KQIEQLQNSLKLENKDIAQQFLISTGDGKYPAFCKETKRITS---KNKTYITVEVHPYIE 509
Query: 395 KGLE--KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS 452
L+ K G H+ Y+PML PP W GG+ + + + T+ + Q + R
Sbjct: 510 SKLQSLKLGTHL--HYLPMLHPPKPWVSPESGGYLTIKTNFVSTNDSIQVELLNRAGVRG 567
Query: 453 QLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS--GGCLAGLVDQEDVPLPEKPNTDDET 510
QL+ + LD +G+T W +N +L + +++ G L+ D LP+K +T
Sbjct: 568 QLDNAYSCLDQMGNTAWAINPFMLDIFNKLMEEEPNGFLSIPPLVPDATLPQKT----KT 623
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHP 569
E+K S R E+ +A K+ + Y+ ++LDFRGR YP P
Sbjct: 624 ELK-----------------SLRITFEIMNKLANAFGKNGDLLYHCYSLDFRGRVYPFSP 666
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
L H G DL R + F PLG G +W+K LA+L+ G + L + + ENH D+
Sbjct: 667 -LTHYGGDLARSLFMFWHSEPLGPNGFYWIKYQLASLF-GQNNCLEF-----YEENH-DN 718
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
I DSA P+ GR+WW+ A+ PF LA C + + L
Sbjct: 719 IVDSARNPMGGRKWWMKADKPFSALAVCFEIIKIL 753
>gi|15843563|gb|AAK97228.2|AF303582_1 RNA polymerase [Trypanosoma brucei]
Length = 1274
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 28/246 (11%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA----------------GLVDQEDVP 499
P+ +ALD + WR++K +L V + + G G + E
Sbjct: 715 PMMKALDAISRVPWRISKYMLHVQEAIVREGYGFGKIRPAFYPLHYCAKSRGDISYESTG 774
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQN------SEKHSQRCDIELKLSVARKMKDEEGFY 553
+ + DD+TE+ + + + +Q+ SE S R L AR + Y
Sbjct: 775 MDDD---DDKTEVYNLQQRREYELQQDEDWKNLSELRSNRIHYLQALRQARSLVQFSHIY 831
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
+P+++DFRGR YP+ LNH GSD R +LE+ E PLGK GL+WLK+HLAN G+ K
Sbjct: 832 FPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMSK 889
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR-SPSPEST 672
LS++ RV + H+DD+ SA++PL G +WW A +P QCL C L++AL+ S PE+
Sbjct: 890 LSFDERVHYVNEHIDDVVCSAEQPLYGDKWWQEAAEPMQCLMACKELADALKCSQGPENF 949
Query: 673 ISHIPV 678
+S IPV
Sbjct: 950 LSRIPV 955
>gi|323512181|gb|ADX87639.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2007_A]
Length = 883
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|224102445|ref|XP_002334173.1| predicted protein [Populus trichocarpa]
gi|222869927|gb|EEF07058.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A+EY L+ +MCE+KLAPNLPYVKSLFLGWFEPL++AI +
Sbjct: 38 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 97
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GL+M G VRVVQAA QIG AI
Sbjct: 98 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 157
Query: 255 ENE 257
E E
Sbjct: 158 EQE 160
>gi|402580131|gb|EJW74081.1| hypothetical protein WUBG_15011, partial [Wuchereria bancrofti]
Length = 250
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 21/250 (8%)
Query: 453 QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN------- 505
Q PVF AL+ LG T W++N+ +L V +++ A E + +P P+
Sbjct: 2 QARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPIHPSRVPIPDY 61
Query: 506 -------TDDETEIKKWKWKVKT---AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
DE I W+ K A K+ +E +S C + +L++A K ++P
Sbjct: 62 VVKFGNMEIDELPITDWREYSKAKYEAMKKRNELNSLWCWLLYRLTMANHFKGSV-LFFP 120
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
H++DFRGR YP+ PYLNH+G DL R +L F EG PLG GL WLK+H NL G + K S
Sbjct: 121 HSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCINL-TGILKKES 179
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
RVA+ + L I +SA+ PL G WW +E+P+Q L+ CI + AL++ +
Sbjct: 180 NFSRVAYADEMLPKILESANNPLSGEMWWTKSEEPWQTLSACIEIRNALQTGN--FLTGP 237
Query: 676 IPVHMVFSVF 685
+ VH++F F
Sbjct: 238 LRVHLLFLPF 247
>gi|323512132|gb|ADX87591.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2008_A]
Length = 883
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|156088049|ref|XP_001611431.1| DNA-dependent RNA polymerase [Babesia bovis T2Bo]
gi|154798685|gb|EDO07863.1| DNA-dependent RNA polymerase, putative [Babesia bovis]
Length = 1088
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 171/402 (42%), Gaps = 65/402 (16%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPP-------------------VDQLGDSPPDI 363
D K W VG L+ L+E+ Y+Q + L ++ PD
Sbjct: 397 DQKQWNSKQSAAVGGYLLHALVESCYVQVDLTTALRQTNSFAELDASMLIPDLNNADPDS 456
Query: 364 RPAFVHTLKSFTKEALKGR---------------------RYGVIECDPLVRKGL-EKTG 401
H LK + R YGV+E L +
Sbjct: 457 TKKKRHWLKKTVSRIRQSRFDASKVEIAAFAHKVHRHGVKVYGVLEMRECCMIHLRDAVA 516
Query: 402 RHMI-IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460
R ++ + +PM+ P W GG L Y +RT Q R T + L V +
Sbjct: 517 RGLVNLSCLPMVCEPKPWTSVASGGLALLKHYFIRT----QCRPTYDVRVYD-LSRVLKV 571
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKK-WKWKV 519
+ G W++N +L V+ ++W + D LP + D+T ++ V
Sbjct: 572 ATSFGKVPWKINGNVLQVLQKLW-----------ETDAVLPVRSFLPDKTLVEADPSTLV 620
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
+ N+ S+ E +L VA E Y+P N+DFRGR YP+ P+LNH+ D+C
Sbjct: 621 NVMDRANAL--SECSLFERRLRVASDFLMEPRIYFPQNIDFRGRMYPLSPHLNHMADDVC 678
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
RG+L+F + PLG+ G WLK+H++NLY G+DK+ RVA+ E + + I P
Sbjct: 679 RGLLKFADKKPLGERGFFWLKVHISNLY--GIDKVPLAERVAWVEKNTNMIQQLVADPFA 736
Query: 640 --GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+ +W E PFQ A ++ ALRS +P S S IPVH
Sbjct: 737 ELSQSFWRRVESPFQFYAASVDYVAALRSGNPYSYQSDIPVH 778
>gi|68299728|ref|YP_249577.1| RNA polymerase [Vibriophage VP4]
gi|66473267|gb|AAY46276.1| RNA polymerase [Vibriophage VP4]
Length = 883
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWTNCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|84998152|ref|XP_953797.1| DNA-directed RNA polymerase (mitochondrial precursor) [Theileria
annulata]
gi|65304794|emb|CAI73119.1| DNA-directed RNA polymerase (mitochondrial precursor), putative
[Theileria annulata]
Length = 1222
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 136/274 (49%), Gaps = 21/274 (7%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
+PM+ P W GG L +R G++ + L VF ++
Sbjct: 646 LPMVCKPKRWINATTGGSILLKHNFIR--GSKLNEVKV-----YDLGNVFDIVNKFSQVP 698
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEI-KKWKWKVKTAKKQNS 527
W +N+++L +I + +S Q D+ + + + T I + + +S
Sbjct: 699 WIINRQMLNLIKHICSS---------QTDMQIKQHLPVNTTTNIMENINTSISNITSLSS 749
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
+ S+ ++ +A +E+ Y P N+DFRGR YP+ PYLNH+ DLCR +L F E
Sbjct: 750 NELSELSLFLRRIKIADAFANEKRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSE 809
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE--GRRWWL 645
LG GL WLK+H +N+Y G DK+S+E RV + + H+ I + P + + +W+
Sbjct: 810 KRKLGNRGLFWLKVHCSNMY--GNDKISFEDRVKWVDEHIAIITELVKSPFKDFNQNFWV 867
Query: 646 GAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
A+ PFQ A+C+ L A+ S +P+ ++H+P+
Sbjct: 868 KADKPFQFFASCVELVRAIESNNPDEYMTHLPIQ 901
>gi|269838910|ref|YP_003324580.1| RNA polymerase [Morganella phage MmP1]
gi|265232571|gb|ACY74627.1| RNA polymerase [Morganella phage MmP1]
Length = 883
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 144/265 (54%), Gaps = 16/265 (6%)
Query: 408 YMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTL 464
Y P +VPP W GG++ P+ ++RTH R+ + + V++A++
Sbjct: 268 YQPCVVPPKPWVSITGGGYWANGRKPTALIRTH----TRKALYRYEDVYMPEVYKAINYA 323
Query: 465 GSTKWRVNKRILGVIDRM--WASGGCLAGLVDQEDVPLPEKPNTDDETE--IKKWKWKVK 520
T WR+N+++L V++ + W + + + + + LP++P+ D E ++ WK +
Sbjct: 324 QETPWRINRKVLAVVNELVKWKNNP-VKDMPSIDKLELPQRPDDIDTNEEALRSWKREAA 382
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
+++ ++ S+ + L A K +++ Y+P+N+D+RGR Y + P N G+D+ +
Sbjct: 383 AVYRKDEQRKSRYLSMSFALEQANKFSNKKAIYFPYNMDWRGRVYAL-PMFNPQGNDMVK 441
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
G+L +G P+GK G +WLKIH AN GVDK+++ R+ F E++ D+I A+ PL+
Sbjct: 442 GLLTLAKGKPIGKDGFYWLKIHGAN--TAGVDKVTFPERIKFIEDNHDNIMQCAESPLDN 499
Query: 641 RRWWLGAEDPFQCLATCINLSEALR 665
WW + PF LA C ++ +
Sbjct: 500 -LWWTEQDSPFCFLAFCFEYAQVTK 523
>gi|307214460|gb|EFN89497.1| DNA-directed RNA polymerase, mitochondrial [Harpegnathos saltator]
Length = 1166
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
+++ +E +S CD KLS+A +D+ F+ PHNLDFRGRAYP+ P+L HL SDL R
Sbjct: 706 RRKKNEMYSLWCDCLYKLSLANHFRDQ-VFWLPHNLDFRGRAYPVAPHLTHLTSDLGRSF 764
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
L F + PLG GL WLKIH NL G + + R+ F LD I DSA PL+G+R
Sbjct: 765 LVFAQKKPLGPKGLDWLKIHAINL-TGMKKREPMKKRLEFANEILDLIIDSARNPLKGKR 823
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW +++P+Q LA C + AL+SP+PE ++ PVH
Sbjct: 824 WWTESDEPWQTLAACKEIDNALQSPNPEEYLTGFPVH 860
>gi|449682634|ref|XP_004210133.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 645
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 138/232 (59%), Gaps = 5/232 (2%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PM++PP W G + L S +RT G + E K + QL +F +L+ LG+
Sbjct: 373 LPMVMPPRPWVSLTSGAYLLLHSDFVRTVSGQYKLHELSKASKEGQLSRIFDSLNYLGNC 432
Query: 468 KWRVNKRILGVIDRMWASGGCLA-GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
W+VN +IL ++ M+ + G + ++ + + + +D T I K + KK +
Sbjct: 433 GWKVNTKILDIMLEMFNNKGDMKLDIIGPIETMMQQYDYKEDMTAIDKKT-NKRLKKKLH 491
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
E + R D+ KLS++ +D+ F+ P+NLDFRGRAYP+ P+ +H+GSD RG+L F
Sbjct: 492 HELFALRMDLLYKLSISNHYRDK-IFWIPNNLDFRGRAYPIAPHCSHIGSDAARGLLLFA 550
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
+G LG+ GL+W+K+HL N++ G + K S + R+ + +NHL++I DSAD+PL
Sbjct: 551 KGKKLGENGLNWIKVHLVNVH-GHLKKSSLKERIEYADNHLEEIMDSADKPL 601
>gi|385304971|gb|EIF48970.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 391
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 198/409 (48%), Gaps = 39/409 (9%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFK 265
M Y P+ + + +A+IT+ +++ +T+ A V V + + +++E E +
Sbjct: 1 MKYGPFIXLMKPEKVAIITILEVMKNCVTSDIARGVPVSKVVMSVSKSLELEYK------ 54
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
++K A+D + + + PE + K +++ +++ L+ ++
Sbjct: 55 -SEKVLASDVDXYXNFRAIRKTPEFKRFLRSKQAEKIIXAAERKSLRNXS--IETETSQL 111
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEAL 379
W D+ +VG LI +L++ A VD G P + PAF HT +
Sbjct: 112 LWDADSHCRVGSALISMLLQIA----KVDVEGVDPKTXEVKKALAPAFYHTY-----DFQ 162
Query: 380 KGRRYGVIECDPLV--RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + GVI+ + + G ++ + + Y+PM+ P W YN GG++ V+R+
Sbjct: 163 NGGKVGVIKVNQRFSSKLGKDRLDQSIQAQYLPMIARPRPWTTYNDGGYYLKRCLVLRSK 222
Query: 438 GARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
A +Q K S +++ V L+ LG+T W VNKRIL ++ ++W +G + E
Sbjct: 223 NAPEQFAYAKAAAMSGKMDKVLSGLNALGNTSWTVNKRILELMTQVWNTGKAFLEIPKAE 282
Query: 497 DVPLPEKPNTDDETEIKKWKWKVKTAKKQNS--EKHSQRCDIELKLSVARKMKDEEGFYY 554
+ + KP I+ ++++ K N+ + S RCD+ KL +AR E ++
Sbjct: 283 EKLILPKPPAKGAEPIEIFRYRRDCRDKCNAFAKDRSMRCDMNYKLEIARAFLGER-IFF 341
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK--AGLHWLKI 601
PH+LDFRGRAYP+ P NHLG+DL RG+L F LG+ A W+K+
Sbjct: 342 PHSLDFRGRAYPIPPNFNHLGNDLTRGLLRF-----LGRKEAWSRWIKM 385
>gi|341876528|gb|EGT32463.1| hypothetical protein CAEBREN_29975 [Caenorhabditis brenneri]
Length = 1223
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 34/299 (11%)
Query: 409 MPMLVPPLNWRGYNRGGHFF----------LPSYVMRTHGARQQRETIKMTPRSQLEPVF 458
+PM VPP W GG + L +R + +QR +T SQ PVF
Sbjct: 529 LPMTVPPRPWIDKGTGGPLYKTSQEIIRKMLEFKAVRLNDEMRQR----ITSPSQARPVF 584
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
AL+ LGST W +N+ +L + ++ A E + +P + +T D + + K
Sbjct: 585 DALNQLGSTPWVINEPMLDTLKEVFEKSKDSASEPLLEKLGIPMRHDTFDIPDFVREFGK 644
Query: 519 VK-----------------TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
VK A K +E +S C ++ ++ +A + ++PHN+DFR
Sbjct: 645 VKREDVDVDRFREYAKKKAEAVKARNESNSLWCWMQYRVVLADHFRGR-TLFFPHNMDFR 703
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GR YP+ PYL+H+G D+ R +L+F + PLG G WLK+H NL G + + S R+
Sbjct: 704 GRVYPLSPYLSHMGDDVNRCILKFAKSQPLGDKGYDWLKLHCINL-TGTMKRASVADRML 762
Query: 622 FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI-SHIPVH 679
E L I DSA PL G +WW+ +++P+Q LA C+ + +A S S +PVH
Sbjct: 763 EAERLLPLILDSARNPLGGEKWWMSSDEPWQTLAACVEIEQATHFGSDIPLFPSQLPVH 821
>gi|342185708|emb|CCC95193.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343472868|emb|CCD15094.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1278
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 131/247 (53%), Gaps = 26/247 (10%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-----------VDQEDV--PLPE 502
P+ +ALD + WR++K +L V + + G + + D+ LP
Sbjct: 715 PMMKALDAISRVPWRISKYMLHVQEAIVREGYGFGKIRPAFYPLHYCAKSRGDICHTLPG 774
Query: 503 KPNT----DDETEIKKWKWKVKTAKKQN------SEKHSQRCDIELKLSVARKMKDEEGF 552
N DD E+ + + + +Q+ SE S R L AR +
Sbjct: 775 SENVSDADDDRAEVYNLQQRREYDLQQDEDWKSLSELRSNRIHYLQALRQARSLVQFSHI 834
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+P+++DFRGR YP+ LNH GSD R +LE+ E PLGK GL+WLK+HLAN G+
Sbjct: 835 YFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMS 892
Query: 613 KLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR-SPSPES 671
KLS++ RV + H++D+ SA++PL G +WW A +P QCL C L++AL+ S PE+
Sbjct: 893 KLSFDERVHYVNEHIEDVVRSAEQPLYGDKWWQEAAEPMQCLMACKELADALKYSQGPEN 952
Query: 672 TISHIPV 678
+S IPV
Sbjct: 953 FLSRIPV 959
>gi|339245165|ref|XP_003378508.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
gi|316972574|gb|EFV56247.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
Length = 1230
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 27/182 (14%)
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
KK +E +S C + KL++A +D+ ++PHNLDFRGR YP P+ NH+G D+CRG+
Sbjct: 727 KKLKNENYSLWCSLLYKLTIANHFRDD-IIWFPHNLDFRGRVYPCPPHFNHMGDDVCRGI 785
Query: 583 ------------------------LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
L F +G PLG+ GL WLK+HL NL G + ++
Sbjct: 786 WLIFYLLILLQFSHYSRLFKIEGLLLFAKGQPLGEKGLDWLKVHLINL-TGIMKHETFTA 844
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS-PESTISHIP 677
R+AF + ++DI DSA +PL GRRWW +E+P+Q LA C+ ++ A+ P E+ SH P
Sbjct: 845 RLAFANSIIEDILDSAAKPLTGRRWWTLSEEPWQTLACCMEIAAAINCPDGCENFQSHFP 904
Query: 678 VH 679
VH
Sbjct: 905 VH 906
>gi|441463239|gb|AGC35521.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph01]
Length = 858
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 36/341 (10%)
Query: 367 FVHTLKSFTKEALKGRRYGVIE---CDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRG 420
F+ + +E ++ R+G +E + + +E H+ YMP +VPP W
Sbjct: 191 FIQSTGLIEREVVQSARFGTLELLTANEATMRWMETENSRLEHLFPIYMPTIVPPKPWTS 250
Query: 421 YNRGGHF--FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
GG++ F +++TH ++ ++ L V++A++ L T W +N ++L V
Sbjct: 251 PFDGGYYTAFRRLKLVKTH----NQQYLEELANRDLSEVYEAINALQDTAWAINTQVLDV 306
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPN----------TDDETE-----IKKWKWKVKTAK 523
+ ++ +G +AGL + + +P +P+ +D TE K WK +
Sbjct: 307 VRTLYETGAGVAGLPQADKLRMPARPHWLPEGKEKMAVEDMTEEQVEEFKAWKAETHRTH 366
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+N+ +R L VA K KDEE F+YPH LD+RGRAYP+ YL G+DL RG+L
Sbjct: 367 VENAAISGRRASFLRTLGVAEKFKDEEAFFYPHTLDWRGRAYPLPLYLTPQGNDLQRGLL 426
Query: 584 EFEEGHPL-GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
F P+ + WL IH A + G DK+ E RV + + + I SA+ P + R
Sbjct: 427 TFSNAVPIHDQEAAEWLAIHGAGCW--GYDKVDMEERVQWVLRNEEQIIASAENPYDN-R 483
Query: 643 WWLGA---EDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
+W+ A E +Q LA C + R +S +P+ M
Sbjct: 484 FWMDADKGEKKWQFLAFCFEWAGLKREGY--GYMSCLPIQM 522
>gi|256080007|ref|XP_002576275.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 474 RILGVIDRMWASGGCLAGLVDQEDVPLPE---KPNTDDETEIKKWKWKVKTAKKQNSEK- 529
+IL + ++ SGG E++ +PE KP D K + +K +S++
Sbjct: 433 KILDYLIQVARSGG-------NENLSIPEWRSKPKRVDLRNNMTAKERRLAYRKYHSDRQ 485
Query: 530 -HSQRCDI---EL-KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ + C + EL +LS+A + +D+ ++PH++DFRGR YP P+ NH GSD+ R ++
Sbjct: 486 DYGEFCSLWSTELYRLSIANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIV 544
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F +G PLG GL WLKIHL NL G + ++ R+ + ++ ++DI DSA++P +GRRWW
Sbjct: 545 FAKGLPLGPNGLDWLKIHLVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWW 603
Query: 645 LGAEDPFQCLATCINLSEALRSPS-PESTISHIPVH 679
+P+Q LA C+ L AL PS PES +SH PVH
Sbjct: 604 QNQAEPWQILACCMELKNALSHPSGPESYVSHFPVH 639
>gi|353230079|emb|CCD76250.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 474 RILGVIDRMWASGGCLAGLVDQEDVPLPE---KPNTDDETEIKKWKWKVKTAKKQNSEK- 529
+IL + ++ SGG E++ +PE KP D K + +K +S++
Sbjct: 433 KILDYLIQVARSGG-------NENLSIPEWRSKPKRVDLRNNMTAKERRLAYRKYHSDRQ 485
Query: 530 -HSQRCDI---EL-KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ + C + EL +LS+A + +D+ ++PH++DFRGR YP P+ NH GSD+ R ++
Sbjct: 486 DYGEFCSLWSTELYRLSIANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIV 544
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F +G PLG GL WLKIHL NL G + ++ R+ + ++ ++DI DSA++P +GRRWW
Sbjct: 545 FAKGLPLGPNGLDWLKIHLVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWW 603
Query: 645 LGAEDPFQCLATCINLSEALRSPS-PESTISHIPVH 679
+P+Q LA C+ L AL PS PES +SH PVH
Sbjct: 604 QNQAEPWQILACCMELKNALSHPSGPESYVSHFPVH 639
>gi|77118172|ref|YP_338094.1| RNA polymerase [Enterobacteria phage K1F]
gi|72527916|gb|AAZ72968.1| RNA polymerase [Enterobacteria phage K1F]
gi|83308114|emb|CAJ29347.1| gp1 protein [Enterobacteria phage K1F]
Length = 893
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 114/455 (25%), Positives = 204/455 (44%), Gaps = 63/455 (13%)
Query: 223 AVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENE---ARIQSFFKSTKKKNATDNNLEG 279
AVI + ++ L+ G + + A IG +E+E RI+ K KK DN
Sbjct: 128 AVIILKVILSKLVKPEG-IPITPMASAIGRTLEDEIRFGRIRDKEKEHFKKAIADN---- 182
Query: 280 DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKV 335
L KR + KK +Q V + +G ++ W V V
Sbjct: 183 ------------------LNKRAGASYKKAYMQAVEASMLEQGQLEDAWGTWSPTEAVHV 224
Query: 336 GCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVR 394
G ++++++++ T ++ G++ D+ VH L F + + R + + P+
Sbjct: 225 GIKMLEIVIQSTQLVELKRYGAGNAAADVE--MVH-LSDFWVKKMAQRGFSLAGIAPV-- 279
Query: 395 KGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRETIKMT 449
Y P +VPP W G GG++ LP + + A + E + M
Sbjct: 280 -------------YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRLGSKSAVARYEDVYMP 326
Query: 450 PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDE 509
V++A++ + +T W+VNK++L V++ + + Q + PE + E
Sbjct: 327 E------VYEAVNIIQNTPWKVNKKVLDVVNMVEKLNNTPIDDIPQMEPLKPEAYAGETE 380
Query: 510 TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
E+K WK ++ + S+R + ++ A K + ++P+N+D+RGR Y + P
Sbjct: 381 EELKAWKKAAAGIYRREKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-P 439
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
N G+D+ +G+L G P+G G WLK+H AN GVDK+++E R+ + E++ D+
Sbjct: 440 MFNPQGNDMQKGLLTLAVGKPIGADGFKWLKVHGAN--CAGVDKVTFEERIKWVEDNHDN 497
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
I +A P++ WW + PF LA C + +
Sbjct: 498 IMAAAKAPMDSIEWWGKLDSPFCFLAFCFEYAGVM 532
>gi|68469100|ref|XP_721337.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|68470125|ref|XP_720824.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|77022784|ref|XP_888836.1| hypothetical protein CaO19_6499 [Candida albicans SC5314]
gi|46442714|gb|EAL02001.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|46443252|gb|EAL02535.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|76573649|dbj|BAE44733.1| hypothetical protein [Candida albicans]
Length = 1218
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 202/444 (45%), Gaps = 58/444 (13%)
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE-KLIKEQEKLKKRV 302
++ +I ++ NE I FK + + + + P+ KL EK+K
Sbjct: 352 IEKILEIETSLSNEEVIIHHFKPFLETVTIQSIINYIIFSILGSPDGKLTTVIEKMKYSF 411
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI---QPPVDQLGDS 359
S++ + ++G V +++ DA +K+ +L++L++E + ++QL +S
Sbjct: 412 PSVLSQHASPNLKGEVFQYIND-----DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNS 466
Query: 360 ----PPDIRPAFVHT-------LKSFTKEA-----LKGRRYGVIECDPLVRKGLE--KTG 401
+I F+ + +F KE K + Y +++ P + L+ K G
Sbjct: 467 LKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIVKMHPYIELKLQSLKLG 526
Query: 402 RHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQAL 461
H+ Y+PML PP W GG+ + + + T+ + Q + R QL+ + L
Sbjct: 527 THL--HYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCL 584
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKT 521
D +G+T W +N +L V ++ L+ D L P+ DET +K K ++K
Sbjct: 585 DQMGNTAWAINPLMLDVFNK----------LMGNPDGFLSIPPSVPDETLPQKTKTELK- 633
Query: 522 AKKQNSEKHSQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
S R E+ +A ++ + Y+ ++LDFRGR YP P L H G DL R
Sbjct: 634 ---------SLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+ F PLG G +W+K LA+L+ + + F E + D+I DSA P+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFGQ-------KNCLEFYEENYDNIIDSARNPMTG 736
Query: 641 RRWWLGAEDPFQCLATCINLSEAL 664
++WW+ A+ PF LA C + + L
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKIL 760
>gi|238883374|gb|EEQ47012.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1218
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 202/444 (45%), Gaps = 58/444 (13%)
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE-KLIKEQEKLKKRV 302
++ +I ++ NE I FK + + + + P+ KL EK+K
Sbjct: 352 IEKILEIETSLSNEEVIIHHFKPFLETVTIQSIINYIIFSILGSPDGKLTTVIEKMKYSF 411
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI---QPPVDQLGDS 359
S++ + ++G V +++ DA +K+ +L++L++E + ++QL +S
Sbjct: 412 PSVLSQHASPNLKGEVFQYIND-----DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNS 466
Query: 360 ----PPDIRPAFVHT-------LKSFTKEA-----LKGRRYGVIECDPLVRKGLE--KTG 401
+I F+ + +F KE K + Y +++ P + L+ K G
Sbjct: 467 LKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIVKMHPYIELKLQSLKLG 526
Query: 402 RHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQAL 461
H+ Y+PML PP W GG+ + + + T+ + Q + R QL+ + L
Sbjct: 527 THL--HYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCL 584
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKT 521
D +G+T W +N +L V ++ L+ D L P+ DET +K K ++K
Sbjct: 585 DQMGNTAWAINPLMLDVFNK----------LMGNPDGFLSIPPSVPDETLPQKTKTELK- 633
Query: 522 AKKQNSEKHSQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
S R E+ +A ++ + Y+ ++LDFRGR YP P L H G DL R
Sbjct: 634 ---------SLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+ F PLG G +W+K LA+L+ + + F E + D+I DSA P+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFGQ-------KNCLEFYEENYDNIIDSARNPMTG 736
Query: 641 RRWWLGAEDPFQCLATCINLSEAL 664
++WW+ A+ PF LA C + + L
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKIL 760
>gi|146421878|ref|XP_001486882.1| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 15/288 (5%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR-SQLEPVFQALDTLGST 467
+PMLVP NW + GG+ ++ + + + +++ R SQL+ F+ LD LGS
Sbjct: 434 LPMLVPARNWTSPDEGGYLGDLQPILHSDFTEKSLQYLRLANRTSQLQSTFKGLDYLGSQ 493
Query: 468 KWRVNKRILGVIDR-MWASGGCLAGL--VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK 524
W VN +L V M S G L + V +V +P P+ D ++ +K KK
Sbjct: 494 AWAVNLSMLEVFSSAMQRSDGMLNIVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNVKK 553
Query: 525 QNSEKHSQ-------RCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+ ++ + R ++E L AR + + Y PH LDFR RAYPM L+H S
Sbjct: 554 EREKRLQEFHNLKGLRVELETLLKAARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHYQS 613
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL R +L F PLG G WL+ LA Y G+DKLS +GR+ F ++++ I A
Sbjct: 614 DLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY--GMDKLSLDGRLKFVADNMETILKCAQN 671
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMVFSV 684
P G WW AE P+Q LA C ++ + + ++ P + S+
Sbjct: 672 PF-GEVWWQKAEKPWQTLAMCFEFAKLQKYIAEGKSVHDYPCRLPISL 718
>gi|190344480|gb|EDK36161.2| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 15/288 (5%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR-SQLEPVFQALDTLGST 467
+PMLVP NW + GG+ ++ + + + +++ R SQL+ F+ LD LGS
Sbjct: 434 LPMLVPARNWTSPDEGGYLGDLQPILHSDFTEKSLQYLRLANRTSQLQSTFKGLDYLGSQ 493
Query: 468 KWRVNKRILGVIDR-MWASGGCLAGL--VDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK 524
W VN +L V M S G L + V +V +P P+ D ++ +K KK
Sbjct: 494 AWAVNLSMLEVFSSAMQRSDGMLNIVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNVKK 553
Query: 525 QNSEKHSQ-------RCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+ ++ + R ++E L AR + + Y PH LDFR RAYPM L+H S
Sbjct: 554 EREKRLQEFHNLKGLRVELETLLKAARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHYQS 613
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
DL R +L F PLG G WL+ LA Y G+DKLS +GR+ F ++++ I A
Sbjct: 614 DLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY--GMDKLSLDGRLKFVADNMETILKCAQN 671
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMVFSV 684
P G WW AE P+Q LA C ++ + + ++ P + S+
Sbjct: 672 PF-GEVWWQKAEKPWQTLAMCFEFAKLQKYIAEGKSVHDYPCRLPISL 718
>gi|2330562|emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 282
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENE 257
G ++VVQAA IG AIE E
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQE 282
>gi|401412922|ref|XP_003885908.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325120328|emb|CBZ55882.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 2032
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE------KPNTD-----DE 509
+ LG+ WR+NK +L V++ W G + L ++ L E K TD
Sbjct: 1453 VSALGAQAWRINKDVLSVMEAAWQRGLEIGRLPPRDSAALDEEILQLRKVATDPGAGAAS 1512
Query: 510 TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
+++ +Q + S+R LKL VA ++ + Y+PHN+DFRGR YP+ P
Sbjct: 1513 GASSAASIRLRHLLQQAGKLQSERPSFLLKLQVASCFQNLDAVYFPHNIDFRGRCYPLPP 1572
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
+LNH+G D+CR +L F E PLG GL WLK+H+ANL+ GV+K+S+ R A+ + LD
Sbjct: 1573 HLNHMGDDICRSLLVFAEPKPLGPNGLGWLKVHIANLF--GVNKVSFADRQAWVDARLDQ 1630
Query: 630 IFDSADRPLEGRRWWL---GAEDPFQCLATCINLSEALRSPSPEST--ISHIPVH 679
+ AD PL R L A+DP+Q L+ + L + L + S +S +P+H
Sbjct: 1631 LLQVADDPLNPRSLHLLDQEADDPWQALSALLELKKVLAHGAENSAQFLSRLPIH 1685
>gi|221485456|gb|EEE23737.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 2101
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 23/243 (9%)
Query: 458 FQALDT---------LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEK----- 503
F A DT LGS WR+NK +LGV++ +W G + L ++ L E+
Sbjct: 1517 FHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEIFQLR 1576
Query: 504 --PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
+ + +++ +Q + S+R LKL VAR + + Y+PHN+DFR
Sbjct: 1577 RVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPSFLLKLQVARCFQHLDAVYFPHNIDFR 1636
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GR YP+ P+LNH+G D+CR +L F E PLG GL WLK+H+ANL+ GV+K+S+ R A
Sbjct: 1637 GRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNKVSFAERQA 1694
Query: 622 FTENHLDDIFDSADRPLEGRRWWL---GAEDPFQCLATCINLSEALRSPSPEST--ISHI 676
+ + + + A+ PL R L A+DP+Q L+ + L + + S +S +
Sbjct: 1695 WVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKNSAQFLSAL 1754
Query: 677 PVH 679
P+H
Sbjct: 1755 PIH 1757
>gi|323512036|gb|ADX87497.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_B]
Length = 883
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 217/482 (45%), Gaps = 74/482 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQ 442
+ P+ Y PM+V P W G GG++ P ++R R
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRVGSKR-- 301
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ + + V+ A++T+ T WR+NK +L V++ + C EDVP
Sbjct: 302 --ALDRYRQVGMPEVYDAINTIQETAWRINKDVLAVVNNVVTWVNCPV-----EDVPSID 354
Query: 500 ---LPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
LPEKP D E +KKWK ++ + S+R +E LS A K Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P+N+D+RGR Y + P N G+D+ +G+L F + P+G G +WL +H AN GVDK+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS---EALRSPSPES 671
S E RV + ++ +I SA+ PL+ WW + PF LA C + +A + PS ES
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 672 TI 673
++
Sbjct: 531 SL 532
>gi|282857708|ref|ZP_06266917.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
gi|282584378|gb|EFB89737.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
Length = 868
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 22/288 (7%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ--RETIKMTPRSQLEPVFQALDTLG 465
Y+P+ +PP +W GG++ + + R + +E I P Q VF+A++
Sbjct: 259 YLPLPIPPRHWTNTQNGGYWTVYGGQLPLVKNRNEAYQEEILNQPE-QFATVFEAVNAAQ 317
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE-------------I 512
T WR+N+R+ V+ + G +AGL + +PLP P + +
Sbjct: 318 DTAWRINQRVYTVLTELVHEGKAVAGLPSADKLPLPNCPKCGAKIVEGVKHECLQSPEVL 377
Query: 513 KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLN 572
WK + ++N++ QR + + + +A + ++E FYY + DFRGR YP+ L
Sbjct: 378 DSWKGLARAVYRKNAKAIGQRLRLGMSMEIAALLLNDERFYYVYQTDFRGRLYPVGN-LT 436
Query: 573 HLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFD 632
G+D +G+LEF +G PLG G WL +H+AN + G DK+ Y+ RV + +++ I D
Sbjct: 437 PQGTDWEKGILEFADGVPLGAHGAKWLAVHVANCW--GNDKVDYDERVQWAKDNTQWIRD 494
Query: 633 SADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
A+ PL R W A+ PF LA CI R + +SH PV +
Sbjct: 495 CANEPLIHRE-WTEADSPFMFLAACIEWDGYCR--EGDGYLSHTPVGL 539
>gi|237835433|ref|XP_002367014.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211964678|gb|EEA99873.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221506312|gb|EEE31947.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 2084
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 23/243 (9%)
Query: 458 FQALDT---------LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEK----- 503
F A DT LGS WR+NK +LGV++ +W G + L ++ L E+
Sbjct: 1500 FHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEIFQLR 1559
Query: 504 --PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFR 561
+ + +++ +Q + S+R LKL VAR + + Y+PHN+DFR
Sbjct: 1560 RVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPSFLLKLQVARCFQHLDAVYFPHNIDFR 1619
Query: 562 GRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA 621
GR YP+ P+LNH+G D+CR +L F E PLG GL WLK+H+ANL+ GV+K+S+ R A
Sbjct: 1620 GRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNKVSFAERQA 1677
Query: 622 FTENHLDDIFDSADRPLEGRRWWL---GAEDPFQCLATCINLSEALRSPSPEST--ISHI 676
+ + + + A+ PL R L A+DP+Q L+ + L + + S +S +
Sbjct: 1678 WVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKNSAQFLSAL 1737
Query: 677 PVH 679
P+H
Sbjct: 1738 PIH 1740
>gi|398016041|ref|XP_003861209.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
gi|322499434|emb|CBZ34507.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
Length = 1510
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEI--- 512
P+ +ALD + WR+NK +L V + + G G + PL +D E
Sbjct: 939 PMLKALDAISRVPWRINKYMLHVQEAIVREGFGF-GKIRPGFYPLHYYYMSDGEVRYPSD 997
Query: 513 -----------------------------KKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
++ + K K+ SE S R L L A
Sbjct: 998 RRRSALLNDNDDDDGDDLAAGDVFNLLQRRQCILQQKQDWKELSELRSSRIHYLLGLRQA 1057
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R + Y+P+++DFRGR YP+ LNH GSD RG+LE+ E PLG GL+WLK+HL
Sbjct: 1058 RSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHL 1117
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN G+ KLS++ RV + + H++D+ SA+ PL G RWW A +P QCL C +++A
Sbjct: 1118 ANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADA 1175
Query: 664 LR-SPSPESTISHIPV 678
++ S PE +S +PV
Sbjct: 1176 MKCSQGPEKFLSRLPV 1191
>gi|146087926|ref|XP_001465944.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
gi|134070045|emb|CAM68377.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
Length = 1510
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 127/256 (49%), Gaps = 36/256 (14%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEI--- 512
P+ +ALD + WR+NK +L V + + G G + PL +D E
Sbjct: 939 PMLKALDAISRVPWRINKYMLHVQEAIVREGFGF-GKIRPGFYPLHYYYMSDGEVRYPSD 997
Query: 513 -----------------------------KKWKWKVKTAKKQNSEKHSQRCDIELKLSVA 543
++ + K K+ SE S R L L A
Sbjct: 998 RRRSALLNDNDDDDGDDLAAGDVFNLLQRRQCILQQKQDWKELSELRSSRIHYLLGLRQA 1057
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R + Y+P+++DFRGR YP+ LNH GSD RG+LE+ E PLG GL+WLK+HL
Sbjct: 1058 RSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHL 1117
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN G+ KLS++ RV + + H++D+ SA+ PL G RWW A +P QCL C +++A
Sbjct: 1118 ANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADA 1175
Query: 664 LR-SPSPESTISHIPV 678
++ S PE +S +PV
Sbjct: 1176 MKCSQGPEKFLSRLPV 1191
>gi|116793061|gb|ABK26601.1| unknown [Picea sitchensis]
Length = 81
Score = 142 bits (358), Expect = 6e-31, Method: Composition-based stats.
Identities = 61/77 (79%), Positives = 67/77 (87%)
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
MKDEE FYYPHNLDFRG AYPMH YLNHLGS++CRG+LEF EG PLGK L+WLKIHLAN
Sbjct: 1 MKDEECFYYPHNLDFRGCAYPMHLYLNHLGSNVCRGLLEFVEGRPLGKTRLYWLKIHLAN 60
Query: 606 LYAGGVDKLSYEGRVAF 622
LY GGVDK S+EGR+ F
Sbjct: 61 LYGGGVDKYSFEGRLTF 77
>gi|401422884|ref|XP_003875929.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492169|emb|CBZ27443.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1511
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+ SE S R L L AR + Y+P+++DFRGR YP+ LNH GSD RG+L
Sbjct: 1039 KELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLL 1098
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG GL+WLK+HLAN G+ KLS++ RV + + H++D+ SA+ PL G RW
Sbjct: 1099 EYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRW 1156
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C +++A++ S PE +S +PV
Sbjct: 1157 WQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPV 1192
>gi|157870161|ref|XP_001683631.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
gi|68126697|emb|CAJ04832.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
Length = 1509
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+ SE S R L L AR + Y+P+++DFRGR YP+ LNH GSD RG+L
Sbjct: 1037 KELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLL 1096
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG GL+WLK+HLAN G+ KLS++ RV + + H++D+ SA+ PL G RW
Sbjct: 1097 EYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRW 1154
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C +++A++ S PE +S +PV
Sbjct: 1155 WQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPV 1190
>gi|194100311|ref|YP_002003741.1| gp1 [Enterobacteria phage EcoDS1]
gi|193201306|gb|ACF15785.1| gp1 [Enterobacteria phage EcoDS1]
Length = 893
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/455 (24%), Positives = 203/455 (44%), Gaps = 63/455 (13%)
Query: 223 AVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENE---ARIQSFFKSTKKKNATDNNLEG 279
+VI + ++ L+ G + + A IG +E+E RI+ K KK DN
Sbjct: 128 SVIILKVILSKLVKPEG-IPITPMASAIGRTLEDEIRFGRIRDKEKEHFKKAIADN---- 182
Query: 280 DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKV 335
L KR + KK +Q V + +G ++ W V V
Sbjct: 183 ------------------LNKRAGASYKKAYMQAVETSMLEQGQLEDAWGTWSPTEAVHV 224
Query: 336 GCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVR 394
G ++++++++ T ++ G++ D+ VH L F + + R + + P+
Sbjct: 225 GIKMLEIVIQSTQLVELKRYGAGNAAADVE--MVH-LSDFWVKKMAQRGFSLAGIAPV-- 279
Query: 395 KGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRETIKMT 449
Y P +VPP W G GG++ LP + + A + E + M
Sbjct: 280 -------------YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRLGSKSAVARYEDVYMP 326
Query: 450 PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDE 509
V+ A++ + +T W+VNK++L V++ + + Q + PE + E
Sbjct: 327 E------VYDAVNIIQNTPWKVNKKVLEVVNMVEKLNNTPIDDIPQMEPLKPEDYAGETE 380
Query: 510 TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
E+K WK ++ + S+R + ++ A K + ++P+N+D+RGR Y + P
Sbjct: 381 EELKAWKKAAAGIYRREKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-P 439
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
N G+D+ +G+L G P+G G WLK+H AN G+DK+++E R+ + E++ D+
Sbjct: 440 MFNPQGNDMQKGLLTLAVGKPIGADGFKWLKVHGAN--CAGIDKVTFEERIKWVEDNHDN 497
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
I +A P++ WW + PF LA C + +
Sbjct: 498 IMATAKAPMDSIEWWGKLDSPFCFLAFCFEYAGVM 532
>gi|150865890|ref|XP_001385284.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
gi|149387146|gb|ABN67255.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
Length = 1202
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 131/285 (45%), Gaps = 41/285 (14%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGS 466
Y PML PP W GG+ ++ + + + I + QL ++AL+ LGS
Sbjct: 478 YFPMLYPPKPWVSPTNGGYLLDLKPIITSSDIKTSMKYIDRANSSGQLNSTYEALNYLGS 537
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
W +N +L V + + +D+ + +P T K
Sbjct: 538 NAWAINSEVLQVFNEVMK--------LDEGFLKIP------------------PTLKVLK 571
Query: 527 SEKHSQRCDIELK------LSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNHLGSDL 578
+E+ D++ K + V D G + PHN+DFRGRAYPM L H D
Sbjct: 572 TEEQEDYNDLKTKRILFNLVHVVANSYDVNGDMLFLPHNVDFRGRAYPMASLLTHYQEDA 631
Query: 579 CRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
RG++ F PLG GL+WLK LA ++ G DKLS+E R+ F + +L+ I +SA+ PL
Sbjct: 632 VRGIMMFWHSQPLGSTGLNWLKYQLAGVF--GKDKLSFENRIQFVDENLESIRESAENPL 689
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI----SHIPVH 679
WW A+ P+Q LA CI L+ A + I S +PVH
Sbjct: 690 SKNSWWKEADKPWQTLALCIELNRAYNYVEQGNKIEEFRSRMPVH 734
>gi|119637750|ref|YP_918986.1| RNA polymerase [Yersinia phage Berlin]
gi|119391781|emb|CAJ70654.1| hypothetical protein [Yersinia phage Berlin]
gi|312436348|gb|ADQ83157.1| RNA polymerase [Yersinia phage Yep-phi]
Length = 883
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 179/376 (47%), Gaps = 39/376 (10%)
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKVGCRLIQLLM-ETAYI 349
QE L KRV + KK +Q V G + G + +K W + ++ VG R+++LL+ T +
Sbjct: 168 QEALNKRVGIVYKKAFMQAVEGKMLDAGQLQTKWTTWTPEEVIHVGVRMLELLIGSTGLV 227
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-Y 408
+ G+ D ++ + + L +R G + I P Y
Sbjct: 228 ELHRPFAGNIEKD--GEYIQLTEQYVD--LLSKRAGALAA---------------IAPMY 268
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ P ++RT G+++ E + V++A++
Sbjct: 269 QPCVVPPKPWTSPVGGGYWAAGRKPLSMVRT-GSKKGLERYN---DVYMPEVYKAVNIAQ 324
Query: 466 STKWRVNKRILGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDD--ETEIKKWKWKVKTA 522
+T W++NK++L V++ + C +A + E LP KP D E +K WK
Sbjct: 325 NTPWKINKKVLAVVNEIVNWKHCPVADVPAMERGELPVKPVDIDTNEASLKAWKKAASAI 384
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
++ + S+R +E L A K + ++P N+D+RGR Y + P N G+D+ +G+
Sbjct: 385 YRKEKARVSRRMSMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGL 443
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
L +G P+G G +WLKIH AN GVDK+ + R+ F E++ ++I A P+
Sbjct: 444 LTLAKGKPIGVDGFYWLKIHGAN--TAGVDKVDFAERIKFIEDNHENIMSVAADPI-ANT 500
Query: 643 WWLGAEDPFQCLATCI 658
WW + PF LA C
Sbjct: 501 WWTEQDSPFCFLAFCF 516
>gi|194100470|ref|YP_002003315.1| gp1 [Yersinia phage Yepe2]
gi|193201203|gb|ACF15684.1| gp1 [Yersinia phage Yepe2]
gi|387941867|gb|AFK13447.1| DNA-directed RNA polymerase [Yersinia phage YpP-G]
Length = 883
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 181/379 (47%), Gaps = 39/379 (10%)
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKVGCRLIQLLM-ETAYI 349
QE L KRV + KK +Q V G + G + +K W + ++ VG R+++LL+ T +
Sbjct: 168 QEALNKRVGIVYKKAFMQAVEGKMLEAGQLHTKWTTWTPEEVIHVGVRMLELLIGSTGLV 227
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-Y 408
+ G+ D ++ + + L +R G + I P Y
Sbjct: 228 ELHRPFAGNIEKD--GEYIQLTEQYVD--LLSKRAGALAA---------------IAPMY 268
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ P ++RT G+++ E + V++A++
Sbjct: 269 QPCVVPPKPWTSPVGGGYWAAGRKPLSMVRT-GSKKGLERYN---DVYMPEVYKAVNIAQ 324
Query: 466 STKWRVNKRILGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDDETEI--KKWKWKVKTA 522
+T W++NK++L V++ + + C +A + E LP KP D E+ K WK
Sbjct: 325 NTPWKINKKVLAVVNEIVSWKHCPVADVPAMERGELPVKPVDIDTNEVALKAWKKAASAI 384
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
++ + S+R +E L A K + ++P N+D+RGR Y + P N G+D+ +G+
Sbjct: 385 YRKEKARVSRRMSMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGL 443
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
L +G P+G G +WLKIH AN GVDK+ + R+ F +++ ++I A P+
Sbjct: 444 LTLAKGKPIGVDGFYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANT 500
Query: 643 WWLGAEDPFQCLATCINLS 661
WW + PF LA C +
Sbjct: 501 WWTEQDSPFCFLAFCFEYA 519
>gi|154338315|ref|XP_001565382.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062431|emb|CAM42292.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1299
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 33/254 (12%)
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-----------VDQEDVPLPE-- 502
P+ +ALD + WR+NK +L V + + G + + D+ P
Sbjct: 729 PMMKALDAISRVPWRINKYMLHVQEAIVREGFGFGKIRPGFYPLHYYSMSDGDIKYPSDR 788
Query: 503 ------KPNTDDETEI-----------KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
N +D ++ ++ + + K+ E S R L L AR
Sbjct: 789 RRSALLNSNDNDGDDLAAGDVFNLQQRRQCTLQQRQDWKELCELRSSRIHYLLGLRQARS 848
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
+ Y+P+++DFRGR YP+ LNH GSD RG+LE+ E PLG+ GL+WLK+HLAN
Sbjct: 849 IVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGEVGLYWLKVHLAN 908
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
G+ KLS++ RV + + H++D+ SA+ PL G RWW A +P QCL C +++A +
Sbjct: 909 --KMGMSKLSFDERVHYVDEHMEDVVQSAENPLSGDRWWQEASEPIQCLMACKEVADAAK 966
Query: 666 -SPSPESTISHIPV 678
S E +S +PV
Sbjct: 967 CSQGAEKFLSRLPV 980
>gi|340058755|emb|CCC53117.1| mitochondrial DNA-directed RNA polymerase,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 517
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K SE S R L AR + Y+P+++DFRGR YP+ LNH GSD R +L
Sbjct: 45 KSLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALL 104
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLGK GL+WLK+HLAN G+ KLS++ RV + H+DD+ SA+ PL G +W
Sbjct: 105 EYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIDDVVRSAELPLYGDKW 162
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C L++AL+ S PE+ +S IPV
Sbjct: 163 WQEAAEPMQCLMACKELADALKCSQGPENFLSRIPV 198
>gi|407860406|gb|EKG07407.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1277
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K SE+ S R L AR + Y+P+++DFRGR YP+ LNH GSD R +L
Sbjct: 805 KSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALL 864
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG+ GL+WLK+HLAN G+ KLS++ RV + H++D+ SA+ PL G +W
Sbjct: 865 EYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKW 922
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C L++AL+ S E+ +S IPV
Sbjct: 923 WQEAAEPMQCLMACKELADALKCSQGAENYLSRIPV 958
>gi|326536115|ref|YP_004300538.1| gp1 [Enterobacteria phage 285P]
gi|256861504|gb|ACV32460.1| gp1 [Enterobacteria phage 285P]
Length = 883
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 178/381 (46%), Gaps = 49/381 (12%)
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKVGCRLIQLLM-ETAYI 349
QE L KRV + KK +Q V G + G + +K W + + VG R+++LL+ T +
Sbjct: 168 QEALNKRVGIVYKKAFMQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGSTGLV 227
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-Y 408
+ G+ D ++ + + L +R G + I P Y
Sbjct: 228 ELHRPFAGNVEKD--GEYIQLTEQYVD--LLSKRAGALAA---------------IAPMY 268
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ P ++RT G+++ E + V++A++
Sbjct: 269 QPCVVPPKPWTSPVGGGYWAAGRKPLSLVRT-GSKKGLERYN---DVYMPEVYKAVNIAQ 324
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDD--ETEIKKWKW 517
+T W++NK++L V++ + C EDVP LP KP D E +K WK
Sbjct: 325 NTPWKINKKVLAVVNEIVNWKHCPV-----EDVPALERGELPVKPEDIDTNEASLKAWKK 379
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
++ + S+R +E L A K + ++P N+D+RGR Y + P N G+D
Sbjct: 380 AASAIYRKEKARVSRRMSMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGND 438
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ +G+L +G P+G G +WLKIH AN GVDK+ + R+ F +++ ++I A P
Sbjct: 439 MTKGLLTLAKGKPIGVDGYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADP 496
Query: 638 LEGRRWWLGAEDPFQCLATCI 658
+ WW + PF LA C
Sbjct: 497 I-ANTWWAEQDSPFCFLAFCF 516
>gi|71665631|ref|XP_819783.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70885100|gb|EAN97932.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1278
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K SE+ S R L AR + Y+P+++DFRGR YP+ LNH GSD R +L
Sbjct: 806 KSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALL 865
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG+ GL+WLK+HLAN G+ KLS++ RV + H++D+ SA+ PL G +W
Sbjct: 866 EYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKW 923
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C L++AL+ S E+ +S IPV
Sbjct: 924 WQEAAEPMQCLMACKELADALKCSQGAENYLSRIPV 959
>gi|71654288|ref|XP_815767.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70880845|gb|EAN93916.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1022
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K SE+ S R L AR + Y+P+++DFRGR YP+ LNH GSD R +L
Sbjct: 808 KSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALL 867
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG+ GL+WLK+HLAN G+ KLS++ RV + H++D+ SA+ PL G +W
Sbjct: 868 EYAEPKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKW 925
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C L++AL+ S E+ +S IPV
Sbjct: 926 WQEAAEPMQCLMACKELTDALKCSQGAENYLSRIPV 961
>gi|407425509|gb|EKF39474.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi marinkellei]
Length = 1328
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K SE+ S R L AR + Y+P+++DFRGR YP+ LNH GSD R +L
Sbjct: 856 KSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALL 915
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
E+ E PLG+ GL+WLK+HLAN G+ KLS++ RV + H++D+ SA+ PL G +W
Sbjct: 916 EYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKW 973
Query: 644 WLGAEDPFQCLATCINLSEALR-SPSPESTISHIPV 678
W A +P QCL C L++AL+ S E+ +S IPV
Sbjct: 974 WQEAAEPMQCLMACKELADALKCSQGAENYLSRIPV 1009
>gi|344229620|gb|EGV61505.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1100
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 177/385 (45%), Gaps = 31/385 (8%)
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
R+ +LI R + H P LVK+ +++LL+ +Q P + G++
Sbjct: 328 RLYTLISSAAQTFTRLVYVEHGLEVPVPMSELVKLFSIIVKLLVGHCKVQVPQEFEGETN 387
Query: 361 PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNW 418
F H + K +YG + +P V ++ + + ++PMLVPP W
Sbjct: 388 WFGGNLFHHQIIRLPKS-----KYGKLSLNPYVFYEMKASELQIGFDRLFLPMLVPPKKW 442
Query: 419 RGYNRGGHFF-LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILG 477
+ GG+ + S + + + QL+ +++ L +GS W +++ +L
Sbjct: 443 VSPDEGGYLNNIKSIISNLNEPAYLLYLKRANTSGQLDFLYRNLSYMGSVPWCLDQDMLK 502
Query: 478 VIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
V + G + G+ P D T++ K ++ +K + S+R
Sbjct: 503 VFNTAMEKEGGILGI----------PPKIDLITKLDKSRY----SKLMYERQKSKRVKYN 548
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
L + +A KD Y PHN+DFRGR YPM L++ D+ R +L+F + HPLG GL+
Sbjct: 549 LIMKIANAFKDN-IMYLPHNVDFRGRVYPMVSVLSYQDEDVTRSLLQFWDPHPLGSNGLN 607
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLK LA LY G DKL E R+ F + + + + SA P++ +WW+ A+ P+Q L C
Sbjct: 608 WLKYQLAGLY--GKDKLPMEDRIEFVDANYNFVLSSARDPMQN-KWWMEADSPWQVLRLC 664
Query: 658 ---INLSEALRSPSPESTISHIPVH 679
+ +SE S S +P+H
Sbjct: 665 KEFLKISEF--SGDISEYKSRVPIH 687
>gi|418488977|ref|YP_007002889.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
gi|308071873|emb|CBW54794.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
Length = 818
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 137/550 (24%), Positives = 233/550 (42%), Gaps = 62/550 (11%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD 203
RQ++IE +A +A + + D + A L V L F + D I K +A +
Sbjct: 17 RQLEIENKARTRAIDRSRKAVKDALDSGRASELLPVSRLISAAFSTVSDEIDKIKAE-KA 75
Query: 204 KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSF 263
Y + + D++A +M V V+ + C +A + + +
Sbjct: 76 PGVGGKYRKFLKLVSTDVLATGSM-------------VYVLDSLCHESQAKSSAQALMAG 122
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ + NLE + N + +KE+ R S I + L+ VK ++
Sbjct: 123 LGRFVQAEVLNRNLEIAAPAYINRVHEYMKEKHT---RSQSHIMR-TLRASADAVK--LE 176
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
PW + VG L+Q + ET + H+ + L G +
Sbjct: 177 HDPWSNTECIAVGRLLMQAVWETGLFK-----------------WHSHSNQMNYLLPGDQ 219
Query: 384 YGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF----LPSYVMRTHGA 439
+ D + + MI P PM+VPP + + GG+ +Y R
Sbjct: 220 LEKVLTDVVTHSSM-----MMIAP--PMIVPPQDHTTIHDGGYMTDIDRRGTYKNRHITN 272
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP 499
+Q+R+ K + +P+ A++ + +RVN+ +LG + A G + G+ + P
Sbjct: 273 KQRRDVAKQFASDEAQPLRAAMNKAQNVPYRVNRSVLGWVQAARAQGIGI-GMPSTKGRP 331
Query: 500 LPE---------KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
PE + + + + ++WK + + ++ SQ + + + + + KDE+
Sbjct: 332 KPEWRLDGIPKEQYDARELEDFEEWKAVTRQWYTEERKRVSQLRGMAMTIDMCEEYKDEQ 391
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
Y+P +D+R R Y LN GSDL + +LEF G PLG GLHWLK+++A + G
Sbjct: 392 VLYFPTCVDWRYRLY-FKSALNPQGSDLQKALLEFGTGRPLGDRGLHWLKVNVATTF--G 448
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DK +E R A+ + H +I AD P E + A+ P+ LA CI L A+RS P
Sbjct: 449 YDKPLFEERAAWVDLHYAEIERVADAPFETDS-FKNADSPWCFLAACIELVNAVRSGCPA 507
Query: 671 STISHIPVHM 680
+SH PV M
Sbjct: 508 EYVSHAPVAM 517
>gi|224110560|ref|XP_002333067.1| predicted protein [Populus trichocarpa]
gi|222838328|gb|EEE76693.1| predicted protein [Populus trichocarpa]
Length = 82
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 69/82 (84%), Gaps = 2/82 (2%)
Query: 401 GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460
RHM+IPYMPMLVPPL WRGY++G H FLPSYVMR HGA+QQRE +K TPR QL+ VF+
Sbjct: 3 ARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRTPRKQLQAVFE- 61
Query: 461 LDTLGSTKWRVNKRILGVIDRM 482
DTLG+TKW VNKR+L V+DR+
Sbjct: 62 -DTLGNTKWSVNKRVLSVVDRI 82
>gi|255731650|ref|XP_002550749.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131758|gb|EER31317.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1205
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 138/307 (44%), Gaps = 39/307 (12%)
Query: 381 GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
G I+ P + LE Y+P+L PP W GG+ + ++ T
Sbjct: 490 GYAVYTIDIHPYLESKLETFTTGTYFRYLPLLCPPKPWTNSQNGGYLNYQTRLIATTDTV 549
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM--WASGGC-LAGLVDQED 497
++ K R QL+ + LD +G+T W +N ++L V +++ + +G + ++ +
Sbjct: 550 HKKLLEKAGVRGQLDSAYNCLDQIGNTPWAINPQMLDVFNKVINYPNGFLEIPAIIPDSN 609
Query: 498 VPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM-KDEEGFYYPH 556
+P K+ E + R IE+ VA K+ + Y+ +
Sbjct: 610 LP-----------------------SKERRELKNLRTSIEITNKVANAFGKNGDLLYHCY 646
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
LDFRGR Y P L H GSDL R + F + PLG+ G +W+K LA+L+ G+
Sbjct: 647 MLDFRGRVYTFSP-LTHYGSDLTRSLFLFWKSQPLGENGFYWVKYQLASLF--GIKNCE- 702
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL----RSPSPEST 672
F E + +I DSA PL+G RWW+ A+ PF L+ C + L + E
Sbjct: 703 ----EFYEENKQNIIDSAMNPLDGSRWWMKADKPFCALSVCFEIKNILDFQESGNNIEDY 758
Query: 673 ISHIPVH 679
+S +P+H
Sbjct: 759 LSRLPIH 765
>gi|326536914|ref|YP_004306321.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
gi|318054490|gb|ADV35666.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
Length = 891
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 16/275 (5%)
Query: 410 PMLVPPLNWRGYNRGGHFF---LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
PM+VPP W GG++ P++ +RTH + +++ + V++A++ +
Sbjct: 269 PMVVPPRPWTRPVGGGYWGKGRRPTHFIRTH----TKASLERYRDVDMAEVYKAVNIAQN 324
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP-LPEKPNTDDET--EIKKWKWKVKTAK 523
T W +NK +L V + + A V LP KP+ DE +K WK +
Sbjct: 325 TAWAINKPVLAVAEALLAWPNVPVKKWPSAAVSELPTKPDDIDENPESLKAWKKEAAGVY 384
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+ + + S+R +E+ + ARK D E Y+PHNLD+RGR Y + + + G+D+ +G+L
Sbjct: 385 RGEAARISRRLSLEMNVETARKFADYEAIYFPHNLDWRGRVYSLTSF-SPQGNDITKGIL 443
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+ +G P+G G+ WL IH AN GVDK+ ++ R + ++ D I A PL+
Sbjct: 444 QASKGEPVGAEGIEWLMIHGAN--TAGVDKVPFDERKQWVRDNEDCILRCARDPLQNTE- 500
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
W+ + PF LA C + R E+ +S +P+
Sbjct: 501 WMSMDSPFCFLAFCFEWAGVKR--DGENHVSALPI 533
>gi|207345728|gb|EDZ72452.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 236
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
Query: 572 NHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF 631
NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G DKL + RVAFTE+HL DI
Sbjct: 1 NHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIK 58
Query: 632 DSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
DSA+ PL G RWW A+ P+Q LATC L+E ++ +PE ISH PVH
Sbjct: 59 DSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVH 106
>gi|149234804|ref|XP_001523281.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453070|gb|EDK47326.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1259
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 33/330 (10%)
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G+ P + AF LKS K A + I +P + K ++ + P+L PP
Sbjct: 514 GNPAPGLYRAFTDILKSNKKHA----KVRFILINPALSKSVKLGSTFGDQHFFPLLCPPQ 569
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRIL 476
W G++ GG + QR K + +L+ F LD +G T W VN IL
Sbjct: 570 PWLGHSTGGMMNSAINFVAGFDKLHQRFLQKAQLQGKLDRAFLCLDQMGKTGWCVNTDIL 629
Query: 477 GVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDI 536
V ++ L + D +P KP +++ + K+ K + + DI
Sbjct: 630 DVFNKAMDLPSGLLKIPPPLDT-MPTKPKDQTARDVRNQR-KIYETIKAVANAYGVNGDI 687
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL 596
++ + DFRGRAY + +NH G D+ R + +F E PLG+ G
Sbjct: 688 ---------------LFHCYLFDFRGRAYALSQ-INHYGEDIMRSLFQFWEAKPLGERGF 731
Query: 597 HWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG---RRWWLGAEDPFQC 653
+WLK LA+L+ G + E F E H ++I +A PL+ RRWWL A+ PFQ
Sbjct: 732 YWLKYQLASLFKPGKETSCEE----FFEKHKNNILQAASNPLDDEALRRWWLQADKPFQF 787
Query: 654 LATCINLSEALR----SPSPESTISHIPVH 679
LATC+ +++ L+ + + I +P+H
Sbjct: 788 LATCMEVAKVLKHLGNGNNVATFICRMPIH 817
>gi|403221340|dbj|BAM39473.1| DNA-directed RNA polymerase precursor [Theileria orientalis strain
Shintoku]
Length = 1221
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 32/321 (9%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIE----CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGY 421
AF H L ++ +K +GV+E C +R + K+ + + +PM+ P W
Sbjct: 603 AFRHVL---LRQGIKT--FGVLEMRESCMLQLRDFVAKS--LLSLAALPMVCRPKKWINA 655
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDR 481
GG L +R G++ + LE VF ++ W +N+ +L +I
Sbjct: 656 TTGGSLLLKHNFIR--GSKLNEVKV-----YDLEGVFDIVNRFSQVPWVINRDMLQIIKA 708
Query: 482 MWASGGCLAGLVDQEDVPLPE-KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
+ D +P+ + P T + K NS++ S+ ++
Sbjct: 709 INN---------DPNSIPMKQFVPITGNNGISGNNGVSGGADTKLNSDQLSELSLFLRRI 759
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
+A +E+ Y P N+DFRGR YP+ PYLNH+ DLCR +L F E +G+ GL WLK
Sbjct: 760 KIADSFVNEKKLYVPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSERRRMGERGLFWLK 819
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE--GRRWWLGAEDPFQCLATCI 658
IH++N++ G DK S+E R+ + + H I D P + +W A+ PFQ A +
Sbjct: 820 IHVSNMF--GNDKKSFEERIRWVDEHYAIIADLTRNPWGDFNQNFWAKADKPFQFFAASL 877
Query: 659 NLSEALRSPSPESTISHIPVH 679
L A+ S P + ++IP+
Sbjct: 878 ELVRAVESGDPANYRTNIPIQ 898
>gi|426347255|ref|XP_004041272.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Gorilla gorilla gorilla]
Length = 943
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
R R + NHLGSD+ R +LEF +G PLG GL WLKIHL NL G + +
Sbjct: 516 RQRXXXXXXHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLRKCL 574
Query: 621 AFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH
Sbjct: 575 AFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVH 633
>gi|212671387|ref|YP_002308386.1| RNA polymerase [Kluyvera phage Kvp1]
gi|211997231|gb|ACJ14548.1| RNA polymerase [Kluyvera phage Kvp1]
Length = 882
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 176/381 (46%), Gaps = 49/381 (12%)
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKVGCRLIQLLM-ETAYI 349
QE L KRV + KK +Q V G + G + +K W + + VG R+++LL+ T +
Sbjct: 167 QEALNKRVGIVYKKAFMQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGSTGLV 226
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-Y 408
+ G+ D ++ + + L +R G + I P Y
Sbjct: 227 ELHRPFAGNVEKD--GEYIQLTEQYVD--LLSKRAGALAA---------------IAPMY 267
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ P ++RT G+++ E + V++A++
Sbjct: 268 QPCVVPPKPWTSPVGGGYWAAGRKPLSLVRT-GSKKGLERYN---DVYMPEVYKAVNIAQ 323
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKV 519
+T W++NK++L V++ + C EDVP LP KP D E WK
Sbjct: 324 NTPWKINKKVLAVVNEIVNWKHCPV-----EDVPALERGELPVKPEDIDTNEAALKAWKK 378
Query: 520 KTAKKQNSEKH--SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+ EK S+R +E L A K + ++P N+D+RGR Y + P N G+D
Sbjct: 379 AASAIYRKEKARVSRRMSMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGND 437
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ +G+L +G P+G G +WLKIH AN GVDK+ + R+ F +++ ++I A P
Sbjct: 438 MTKGLLTLAKGKPIGVDGYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADP 495
Query: 638 LEGRRWWLGAEDPFQCLATCI 658
+ WW + PF LA C
Sbjct: 496 I-ANTWWAEQDSPFCFLAFCF 515
>gi|29366702|ref|NP_813747.1| T3/T7-like RNA polymerase [Pseudomonas phage gh-1]
gi|29243561|gb|AAO73140.1|AF493143_1 putative RNA-polymerase [Pseudomonas phage gh-1]
Length = 885
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 133/552 (24%), Positives = 229/552 (41%), Gaps = 98/552 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD--- 197
L Q+++E EA+ + + + E+ N K L LG P+ D
Sbjct: 31 LAAEQLQLEHEAYTLGEERFHKAMERQMERGEFSNSQVAKPL-LGHLVPMLSKAITDWIE 89
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENE 257
T + + KH+ F + + MA I + + + +G + + A IG A+E E
Sbjct: 90 HQTTKVRRKHVALGA-FQQMNPETMASIVIRWTINRIAQRSGAPTITEMAVSIGGALEEE 148
Query: 258 ARI--------QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
AR Q + K KK A N + + ++K +I+
Sbjct: 149 ARFGRIRVLEQQHYQKHIKKALAQRNGM--------------TYKVAYMEKVEAHMIEAG 194
Query: 310 KLQQVRGIVKGHVDSKPW------GQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+L + PW G D +G R+++LL+E T I+ + G+ D
Sbjct: 195 QLNE------------PWTEWDQSGADVRYHMGIRMLELLIESTQLIEVVREHKGNKKLD 242
Query: 363 IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYN 422
+ LK+ + L+ R Y + P Y PM+VPP W G
Sbjct: 243 GEYVY---LKAEWADKLQSRAYILSGVFPR---------------YQPMVVPPKPWNGVR 284
Query: 423 RGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
GG++ P +R R + + V++A++ +T W +N+++L V
Sbjct: 285 GGGYWAKGRKPVTFIRVPTKR----ALNRYRDVHMPEVYKAVNLAQATPWAINQKVLAVA 340
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTD-------------DETEIKKWKWKVKTAKKQN 526
+ ++ E+VP+ E P+T+ +E +K WK +++
Sbjct: 341 N----------AVMSWENVPIKEFPSTEREALPIKPGDIETNEEALKAWKKAAAGVYRKD 390
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ + S+R E L A K + + Y+P+NLD+RGR Y + P N +D+ +G+L+
Sbjct: 391 AARVSRRLSYEFSLEQANKFAEYDAIYFPYNLDWRGRVYAI-PAFNPQSNDMTKGILQAA 449
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+G P+GK G+ WL IH AN GVDK+ + R + +++ + I A PL W+
Sbjct: 450 KGEPVGKDGIEWLMIHGAN--CAGVDKVDFSQRKQWIKDNEEMILRCAHDPLINTD-WMD 506
Query: 647 AEDPFQCLATCI 658
+ PF LA C
Sbjct: 507 MDSPFCFLAFCF 518
>gi|223304|prf||0706231A polymerase,RNA
Length = 883
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 143/559 (25%), Positives = 229/559 (40%), Gaps = 115/559 (20%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQVR------GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSEGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSSHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIAIRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRM--WASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWK----V 519
N+++L V + + W ED+P LP KP D WK +
Sbjct: 331 NRKVLAVANVIARWKH-------YPVEDIPAIEREELPMKPEDIDMNPEALTAWKRLPLL 383
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
TA+ + L ++ G P+N+D+RGR Y + + N G+D+
Sbjct: 384 CTARTGLASLAVSALSSCLSKPISLLTIRPPG--SPYNMDWRGRVYAVSMF-NPQGNDMT 440
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
+G+L +G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE
Sbjct: 441 KGLLTLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE 498
Query: 640 GRRWWLGAEDPFQCLATCI 658
WW + PF LA C
Sbjct: 499 -NTWWAEQDSPFCFLAFCF 516
>gi|344299821|gb|EGW30174.1| hypothetical protein SPAPADRAFT_57614 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1073
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 27/304 (8%)
Query: 383 RYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
+Y VI+ P++ L G+ + PM+VPP W GG+ V +
Sbjct: 353 KYPVIKIHPILENDLSNCRGK---VSRFPMVVPPKPWTNLFEGGYLVHKECVFMARFDKT 409
Query: 442 QRETIK-MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL 500
K ++ L+ VF L+ LGS W +N +L +++R A + Q + +
Sbjct: 410 YLNYFKQVSYDGHLDSVFMTLNKLGSLAWAINPDMLKILNR--------AANMPQGFLKI 461
Query: 501 PEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKM-KDEEGFYYPHNLD 559
P +P +D K K+K K A+++ R + L +A K+ E Y P+ LD
Sbjct: 462 P-RPISD-----KVPKFKDKFAQQKYISSKGARITFNMLLDMANGFSKNGEMLYTPYQLD 515
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGR 619
FRGR YP L+H+ SD R + F LG G +WLK HL++++ G E
Sbjct: 516 FRGRVYP-SSNLSHILSDEFRCLFMFWHSKALGNDGFNWLKYHLSSMF--GNSGFHMEQA 572
Query: 620 VAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI----SH 675
+ F + H DI DSA P +G++WWL ++ P+Q L+ C+ L++ I +
Sbjct: 573 IGFCDKHKQDIIDSAKYPFDGKQWWLKSKTPYQTLSACMELTKVWEFEEQGGNIEEFRTR 632
Query: 676 IPVH 679
PVH
Sbjct: 633 FPVH 636
>gi|194100256|ref|YP_002003454.1| gp1 [Enterobacteria phage BA14]
gi|193201251|gb|ACF15731.1| gp1 [Enterobacteria phage BA14]
Length = 883
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 177/384 (46%), Gaps = 49/384 (12%)
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSK--PWGQDALVKVGCRLIQLLM-ETAYI 349
QE L KRV + KK +Q V G + G + +K W + + VG R+++LL+ T +
Sbjct: 168 QEALNKRVGIVYKKAFMQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGSTGLV 227
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-Y 408
+ G+ D ++ + + L +R G + I P Y
Sbjct: 228 ELHRPFAGNVEKD--GEYIQLTEQYVD--LLSKRAGALAA---------------IAPMY 268
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
P +VPP W GG++ P ++RT G+++ E + V++A++
Sbjct: 269 QPCVVPPKPWTSPVGGGYWAAGRKPLSLVRT-GSKKGLERYN---DVYMPEVYKAVNIAQ 324
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKV 519
+T W++NK++L V++ + C +DVP LP KP D E WK
Sbjct: 325 NTPWKINKKVLAVVNEIVNWKHCPV-----DDVPALERGELPIKPEDIDTNEAALKAWKK 379
Query: 520 KTAKKQNSEKH--SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+ EK S+R +E L A K + ++P N+D+RGR Y + P N G+D
Sbjct: 380 AASAIYRKEKARVSRRMSMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGND 438
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRP 637
+ +G+L +G P+G G +WLKIH AN GVDK+ + R+ F +++ ++I A P
Sbjct: 439 MTKGLLTLAKGKPIGVDGYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADP 496
Query: 638 LEGRRWWLGAEDPFQCLATCINLS 661
+ WW + PF LA C +
Sbjct: 497 I-ANTWWAEQDSPFCFLAFCFEYA 519
>gi|431811028|ref|YP_007238103.1| putative RNA polymerase [Xanthomonas phage CP1]
gi|394556921|dbj|BAM29105.1| putative RNA polymerase [Xanthomonas phage CP1]
Length = 804
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/556 (23%), Positives = 226/556 (40%), Gaps = 73/556 (13%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
Q+++E +A+ + + +A E+ +A N PY ++++ + PL DA+ +Q + K
Sbjct: 4 QVELELQAYSFGKERMEKAIARNEEKGVADNNPYAQAVYRRFVLPLADALKAEQQADRGK 63
Query: 205 WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFF 264
+ + + + A + + + LM N + ++ + ++G A+ +E ++ F
Sbjct: 64 GRKPAHLKLLEAVDPEPSAFVAVRAALVHLMGNPADNALILLS-RVGSAVYHELLLRDF- 121
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
+ D L L N + + E+ + V K + + RG+V
Sbjct: 122 ------DTLDPKL---FHSLANGAGRNMYAGERYRLEV---FKAEGAR--RGVVL----- 162
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W + +VG L + QL + TL E + G R
Sbjct: 163 PEWEMADIERVGAWFSDQLATLGMLSISTHQLASKHSTMEA----TLSEEVTELIDGIRD 218
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGA 439
V+E ++P + P +W Y+ GG L Y ++TH
Sbjct: 219 EVVENAAY---------------FLPCVEKPKDWESYDEGGWHTDQMRRLMPYAIKTHAG 263
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG--CLAGLVDQED 497
+ + + L L+TL +T+WR+N+RIL V+ R+ GG L ++ Q +
Sbjct: 264 VRH-----LLGGADLSKELACLNTLQATRWRINRRILSVMSRL---GGKINLGEVLAQGE 315
Query: 498 VPLPEKP------------NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
P P++P + D E + WK + + ++ ++ + VA +
Sbjct: 316 EPRPDRPAWLLEKMEESQMDEDQLQEFRTWKRLMALWHARKKKRVTKWGRYRQAMDVATR 375
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGL-HWLKIHLA 604
D E Y+ + DFRGR Y M ++ GSDL + +LEF EG PL G W I A
Sbjct: 376 FADYENLYFVYFCDFRGRKYAMTTGVSPQGSDLQKALLEFAEGKPLHTKGAKDWFCITGA 435
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N Y G DK+ R+ + H + I +A P WWL A P Q LA C+ +
Sbjct: 436 NRY--GYDKVDLGSRIEWVHTHHEFILSAARDPANS-EWWLQASKPLQFLAWCMEYRDW- 491
Query: 665 RSPSPESTISHIPVHM 680
ES SH+ M
Sbjct: 492 -QEQGESFESHLSAGM 506
>gi|316934324|ref|YP_004109306.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
gi|315602038|gb|ADU44573.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
Length = 842
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 167/376 (44%), Gaps = 43/376 (11%)
Query: 308 KQKLQQVRGIVK--GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
KQ+LQ R I K G S W + VG I +L+ PD+
Sbjct: 154 KQRLQAARSIAKKEGFSQSAQWTPTQRIAVGHFAIDILLRAL-------------PDLFE 200
Query: 366 AFVHTLKSFTKEALKGRRYGVIE-CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
A + K R + V E + L++ R + ++P PP+ W + G
Sbjct: 201 APIEGDK---------RVFRVTEDANKAAEAALQEHIRRYPV-FLPSEEPPVPWSDFKGG 250
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRS----QLEPVFQALDTLGSTKWRVNKRILGVID 480
G + + T + +ET+ R+ ++P A+ + + WR+N IL V+
Sbjct: 251 GPVDPAARKLVTLVRTRHKETVAAVRRAIADGSMQPALDAVSAVQAVPWRINTAILNVMR 310
Query: 481 RMWASGGCLAGLVDQEDVPLP---EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
G + GL ++P+P E ++ + E K + + K N+ R E
Sbjct: 311 ECRRRGIDVEGLPPLHNLPMPPPVEDYDSLSDEEKKLVRVERAAIKTANNSFVVDRMRFE 370
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
+ A + E FY PHNLD+RGR YP+ + N D R + F++ P+G+ G+
Sbjct: 371 GDMETAEALSRLEQFYIPHNLDWRGREYPLCTF-NFQRGDYVRSLFLFKDAKPIGEEGIE 429
Query: 598 WLKIHLANLYA-GGVDKLSYEGRVAFTENHLDDIFDSADR------PL--EGRRWWLGAE 648
WLK+HLAN G V K +++ R+ +T+++L+ I D A + PL E +W A+
Sbjct: 430 WLKVHLANCGDFGKVSKKTFDKRIKWTDDNLERIKDCATKDWDCGGPLTPEALSFWTQAD 489
Query: 649 DPFQCLATCINLSEAL 664
PF LA CI L+ AL
Sbjct: 490 KPFLFLAACIELTNAL 505
>gi|441463322|gb|AGC35603.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph02]
gi|441463383|gb|AGC35663.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph03]
Length = 812
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/455 (25%), Positives = 197/455 (43%), Gaps = 66/455 (14%)
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK---KRVTSLIKKQKLQQVRG 316
+F S + K AT ++ L D + K Q++ K + + + K++ + R
Sbjct: 80 FNAFQNSRQGKEATPVSIANVCGRLIEDEIRFSKFQQQFKAYYQEIAADFKRKGSKDYRY 139
Query: 317 I-------VKGHVDS-KPWGQDALVKVGCRLIQLLME-TAYIQP-PVDQLGDSPPDIRP- 365
+ H D KPW V VG RL+ L+++ T I+ + G + IRP
Sbjct: 140 MHRVLTHSANSHEDGWKPWSVSERVDVGMRLLDLVVQHTDLIEKGEYKRNGQTIIVIRPT 199
Query: 366 -AFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNR 423
A + ++ + + A +I P MP ++ P +W ++
Sbjct: 200 DATLEFIQKYDEVA------------------------ELIHPRQMPCIIKPDDWTAIDQ 235
Query: 424 GGHFFLPS-----YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
GG ++ P+ +++ T +Q+ K+ R+ L V QA++ S +W+VNK++L V
Sbjct: 236 GG-YYSPTLRSACHLVLTRHPKQK----KILRRADLSSVMQAVNGAQSVEWKVNKKVLEV 290
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE---------IKKWKWKVKTAKKQNSEK 529
+ +WA G+ E + E P D + E +WK + + E+
Sbjct: 291 LKLVWAKN-LQVGVPSSEKLVPSECPIKDKKKEEMTDAEALVFMEWKRQASEVYTREKER 349
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
+ I L A + + F+Y LDFRGR Y + G D+ +G+L F G
Sbjct: 350 IGKCFQITSILRAANEYSLYDRFWYVWQLDFRGRLYTATSGFSPQGPDVAKGLLTFAGGK 409
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
PLG G++WLK+HLAN Y G DK Y+ RV + + + +A P+ W A+
Sbjct: 410 PLGSRGVYWLKVHLANRY--GFDKGHYDERVQWVDQRHNAFIAAAADPIAHIDVWKDADK 467
Query: 650 PFQCLATCINLSEA----LRSPSPESTISHIPVHM 680
P+Q LA E L PE IS++P+ +
Sbjct: 468 PYQFLAALFEYKEMHDGRLVGKRPEEYISYLPIGL 502
>gi|147865940|emb|CAN78837.1| hypothetical protein VITISV_037333 [Vitis vinifera]
Length = 105
Score = 122 bits (307), Expect = 5e-25, Method: Composition-based stats.
Identities = 56/68 (82%), Positives = 59/68 (86%)
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +LE E H LGK+GLHWLKIHLANLYA GVDKLSYEG VAFTENHL+DIFDSADRPLE
Sbjct: 38 RAILELAEEHLLGKSGLHWLKIHLANLYAXGVDKLSYEGCVAFTENHLEDIFDSADRPLE 97
Query: 640 GRRWWLGA 647
GRRW L A
Sbjct: 98 GRRWCLFA 105
>gi|441463685|gb|AGC35961.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph08]
gi|441463740|gb|AGC36015.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph09]
Length = 812
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 197/455 (43%), Gaps = 66/455 (14%)
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK---KRVTSLIKKQKLQQVRG 316
+F S + K AT ++ L D + K Q++ K + + + K++ + R
Sbjct: 80 FNAFQNSRQGKEATPVSIANVCGRLVEDEIRFSKFQQQFKAYYQEIAADFKRKGSKDYRY 139
Query: 317 I-------VKGHVDS-KPWGQDALVKVGCRLIQLLME-TAYIQP-PVDQLGDSPPDIRP- 365
+ H D KPW V VG RL+ L+++ T I+ + G + IRP
Sbjct: 140 MHRVLTHSANSHEDGWKPWSVSERVDVGMRLLDLVVQHTDLIEKGEYKRNGQTIIVIRPT 199
Query: 366 -AFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNR 423
A + ++ + + A +I P MP ++ P +W ++
Sbjct: 200 DATLEFIQKYDEVA------------------------ELIHPRQMPCIIKPDDWTAIDQ 235
Query: 424 GGHFFLPS-----YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGV 478
GG ++ P+ +++ T +Q+ K+ R+ L V QA++ S +W+VNK++L V
Sbjct: 236 GG-YYSPTLRSACHLVLTRHPKQK----KILRRADLSSVMQAVNGAQSVEWKVNKKVLEV 290
Query: 479 IDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE---------IKKWKWKVKTAKKQNSEK 529
+ +WA G+ E + E P D + E +WK + + E+
Sbjct: 291 LKLVWAKN-LQVGVPSSEKLVPSECPIKDKKKEEMTDAEALVFMEWKRQASEVYTREKER 349
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
+ I L A + + F+Y LDFRGR Y + G D+ +G+L F G
Sbjct: 350 IGKCFQITSILRAANEYSLYDRFWYVWQLDFRGRLYTATSGFSPQGPDVAKGLLTFAGGK 409
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
PLG G++WLK+HLAN Y G DK Y+ RV + + + +A P+ W A+
Sbjct: 410 PLGSRGVYWLKVHLANRY--GFDKGHYDERVQWVDQRHNAFIAAAADPIAHIDIWKDADK 467
Query: 650 PFQCLATCINLSEA----LRSPSPESTISHIPVHM 680
P+Q LA E L PE +S++P+ +
Sbjct: 468 PYQFLAALFEYKEMHDGRLVGKRPEEYLSYLPIGL 502
>gi|448537583|ref|XP_003871363.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis Co 90-125]
gi|380355720|emb|CCG25238.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis]
Length = 1236
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 39/281 (13%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ--LEPVFQALDTLG 465
+ P+L PP W G N+G +L G Q ++TI Q L+ F+ LD +G
Sbjct: 514 HFPLLCPPEPWLGVNKGA--YLERSTPFLSGFDQLQQTILQNAHLQGKLDSAFKCLDQMG 571
Query: 466 STKWRVNKRILGVIDR-MWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK 524
T W +N +L V ++ M G L D+P P + + +K+
Sbjct: 572 KTAWSINPDLLSVFNKVMEIPQGFL-------DIP----PKVIEVSS---------KSKQ 611
Query: 525 QNSEKHSQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+ + R + E +A ++ + Y+ + DFRGR YP+ P L H G DL R +
Sbjct: 612 EIIDIKGLRSNFETVKMLANAFGRNGDMLYHCYVFDFRGRVYPLSP-LTHYGGDLTRSLF 670
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+F G PLG G +W+K L +++ GG D + F +N + +I DSA PL RW
Sbjct: 671 QFWHGQPLGANGFYWIKYQLMSVFGGGTDCEQF-----FNQNRV-EIIDSAVDPLHN-RW 723
Query: 644 WLGAEDPFQCLATCINLSEALR-----SPSPESTISHIPVH 679
W+ A++PF L+ CI + + L+ S E + +P+H
Sbjct: 724 WMKADEPFSALSVCIEIRKILQFLEQGKGSIEEYVCRLPIH 764
>gi|344170841|emb|CCA83277.1| DNA-directed RNA polymerase from phage [blood disease bacterium
R229]
Length = 795
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 213/526 (40%), Gaps = 69/526 (13%)
Query: 175 NLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLL 234
N PY ++F W P+RD I + A + + +L +A I + +
Sbjct: 13 NNPYSSAVFRRWLVPVRDMIEESVAATGKPGRRAAHVMLLRSLDPAAIAFIAVRSALTHT 72
Query: 235 MTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
++ G+ IG+ + E + +F +PE +
Sbjct: 73 VSGGGD-NARNLGNDIGKGVYGELVLATFEHI--------------------NPELYWEV 111
Query: 295 QEKLKKRVTSLIKKQKLQQVR-GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV 353
L KR S + + Q +R K ++ W +VG L++L+ E ++ V
Sbjct: 112 SHDLDKR-RSKSSRHRYQTLRHSAQKAEIEVPYWSPSDRTQVGLWLVELMREVGLLE--V 168
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-MPML 412
++ ++ + + S + R GV+E M +P+ P +
Sbjct: 169 QRVHETRYGKHKERLEVMLSEEAAQIVQRIRGVVE---------------MTMPFHQPCI 213
Query: 413 VPPLNWRGYNRGGHFF------LPSYV-MRTHGARQQRETIKMTPRSQLEPVFQALDTLG 465
PP +W N GG+ LP V MR R R+ I ++ + V A++ L
Sbjct: 214 EPPKDWVSVNDGGYHTQEMRRQLPHCVNMRRQHLRTMRDQIA---KADMTNVLDAINHLQ 270
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQ--EDVP-LPE----KPNTDDETE-----IK 513
+W+VN IL V+ + G +V Q ED P +PE DD TE K
Sbjct: 271 RVRWQVNTDILDVVLAL-GKGRDSGEVVGQTWEDKPAVPEWLTPGMKADDMTEAQAEQFK 329
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+WK + N + + A K +D ++ + DFRGR Y M ++
Sbjct: 330 QWKRAMAQWHTDNKARGIKWGRFYSATQTALKYRDYPAIHFVYQADFRGRLYAMTTGVSP 389
Query: 574 LGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFD 632
GSD+ + +L F +G PL + W KI+ AN Y G+DK+++E R+A+ + H I
Sbjct: 390 QGSDMQKALLRFADGKPLEDTEAVRWFKINGANRY--GIDKVTFEERIAWVDAHEAMILR 447
Query: 633 SADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
AD P+ W + P Q LA CI + RSP + +S IPV
Sbjct: 448 IADDPVSRHDDWKEVDSPLQFLAWCIEYARWRRSPG--TFVSRIPV 491
>gi|15505|emb|CAA24333.1| unnamed protein product [Enterobacteria phage T7]
Length = 883
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 140/557 (25%), Positives = 221/557 (39%), Gaps = 111/557 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKVKTAKKQ 525
NK++L V + + C ED+P LP KP D WK A
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 385
Query: 526 NSEKHSQRCDIELKLSVARKMK----DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 581
+ + L +++ + G R A M N G+D+ +G
Sbjct: 386 RKTRLASLAVSALSSCLSKPISLLTIRPSGSLTTWTGAVRVYAVSM---FNPQGNDMTKG 442
Query: 582 VLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
L +G P+GK G +WLKIH AN GVDK+S+ R+ F E + ++I A PLE
Sbjct: 443 RLTLAKGKPIGKEGYYWLKIHGAN--CAGVDKVSFPERIKFIEENHENIMACAKSPLE-N 499
Query: 642 RWWLGAEDPFQCLATCI 658
WW + PF LA C
Sbjct: 500 TWWAEQDSPFCFLAFCF 516
>gi|89148156|gb|ABD62821.1| mitochondrial single-subunit RNA polymerase [Paravahlkampfia sp.
LA]
Length = 400
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
LG+D+ RG+L F EG P+ + G+ WLKIHLANL G DKLS+E RV + ++++DDI DS
Sbjct: 1 LGADVNRGLLLFAEGQPISEKGIFWLKIHLANL--DGKDKLSFEERVQYIDDNIDDIMDS 58
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
ADRPLEG+RW+LG E+P+Q LA CI L+ LR+P P +S +PV M
Sbjct: 59 ADRPLEGKRWFLGTENPWQALAACIELTNCLRAPVPTEYVSKLPVQM 105
>gi|378406358|gb|AFB82771.1| RNA polymerase [Vibrio phage phi-A318]
Length = 928
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 115/488 (23%), Positives = 202/488 (41%), Gaps = 62/488 (12%)
Query: 240 EVRVVQAACQIGEAIENEAR-----------IQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
E+ A IG IE+E R IQ+ +S KK+N+ + D
Sbjct: 103 EITAQNLANNIGRRIEDEVRFTKLNNAAPKYIQAIKESLKKRNSNSYKFDHDVMVHAEKE 162
Query: 289 EKLIKE--------QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK---PWGQDALVKVGC 337
KL+ + +EKL+ I K Q + + +D PW + ++++G
Sbjct: 163 LKLLADFQALLGAGEEKLEIMRLLSIDNDKYQHLLDKAEFAIDIDRWIPWSDNDVIQLGA 222
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVR--K 395
+LI++ + + L D P I K + ++ D L +
Sbjct: 223 KLIEIFGK--------NMLMDGQPLI-------AKQVNGQGRGKTTAKIVATDALETWIQ 267
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRG-YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
G ++ +M Y P +VPP W+ +N G H S + R ++ ++T R Q+
Sbjct: 268 GYKEVVGNMSPAYEPCVVPPKEWKSPFNGGYHSKEVSSNLPIAKVRDKKHLRRLT-RKQM 326
Query: 455 EPVFQALDTLGSTKWRVNKRILGVIDRM--------------WASGGCLAGLV--DQEDV 498
V+QAL+ L + KW++N I + + + + C + D
Sbjct: 327 PKVYQALNALQNVKWQINPSIYAIANEIRLRELPLGMPEFKKYNKPACPVPAIYSDLRGE 386
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
L + + D + K WK ++ + + +++ S ++ L A K KD E ++ + L
Sbjct: 387 DLMQVLDDDQKAAFKNWKRQIASIYAKENKRKSDVREVVATLDQANKFKDFENLHFVYTL 446
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGR Y ++ G DL + ++ F + PLG G +W K+H AN++ G DK ++
Sbjct: 447 DFRGRVYCHSSLVSPQGGDLQKALIRFADSMPLGSTGAYWFKVHGANVW--GWDKETFAE 504
Query: 619 RVAF--TENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
RV+ TE + D A P+ W A+ P+Q LA C + L +
Sbjct: 505 RVSRCETEEFKEMCLDIAADPITFTD-WTKADKPWQFLAWCYEYAALLEWIDEGNNEQDF 563
Query: 677 PVHMVFSV 684
P H+ ++
Sbjct: 564 PSHIAVAM 571
>gi|315518929|dbj|BAJ51806.1| RNA polymerase-like protein [Ralstonia phage RSB2]
Length = 863
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/541 (22%), Positives = 223/541 (41%), Gaps = 66/541 (12%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L Q IE EA+E A + + E+ + + L ++ I + A
Sbjct: 15 LAEAQRAIEAEAYEVGAARFLAAMEAKAERGEGADTKVARPLIADLVPKVQAGIEEFLAL 74
Query: 201 AQD--KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV------RVVQAACQIGE 252
Q + A + + + + A IT+ ++ + +G V+ IG
Sbjct: 75 TQSGKAGRRHAAAKFLSQVSVERAAFITLRCILNAMTQTSGGSGSSKVPTVISVTMAIGH 134
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
+E+EAR + ++ + + P + +R K+ +
Sbjct: 135 DMEDEARF------GRMRDENQKHFDARIAP-------------AIAQRSGDHFKRAYAR 175
Query: 313 QVRGIVK--GHVDS-KPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFV 368
V ++ G +D W VG +L++++++ T I+ + GD R V
Sbjct: 176 AVEVAMQDAGELDEWDGWSNQERAAVGLKLVEIVIQSTGLIELKQEHKGDPK---RHRVV 232
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+ E L R + + + P Y P +VPP W + GG++F
Sbjct: 233 VEITDQYAEWLAKRTHTLADMTP---------------AYAPCVVPPKPWINHRAGGYWF 277
Query: 429 ----LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRM-- 482
P ++R R +R L V +L+ + +T W +NKR+L V +++
Sbjct: 278 NEDKAPLMLVRGSPKRNRRYR-----DVDLTKVLASLNAIQNTPWTINKRVLEVAEQVAQ 332
Query: 483 WASGGCLAGLVDQEDVPLPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
W + + + PE+ + DE E +K+WK + A ++ + S+R +E L
Sbjct: 333 W-ENPPVKKMPSHVTLEKPERLDEMDEDEAVLKQWKKQAALAYRKEKARRSRRYQLETSL 391
Query: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK 600
ARK E ++P++LDFRGR Y + + G DL + +L F + +G G WL+
Sbjct: 392 FQARKYAGFERLWFPYSLDFRGRIYAATKF-SPQGQDLDKALLLFADAPEIGVGGEFWLR 450
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
+HLAN GG+DK + E R+ +T+++ + I A PL+ W A+ PF LA
Sbjct: 451 MHLAN--TGGMDKATMEERIQWTKDNEEMILAVAANPLDCLWWATDADSPFCFLAAAFEY 508
Query: 661 S 661
+
Sbjct: 509 A 509
>gi|241568699|ref|XP_002402558.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
gi|215500047|gb|EEC09541.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
Length = 389
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
K++ +E +S CD KLS+A + + F L R P + +G D+ RG+
Sbjct: 17 KRKRAEMYSLWCDALYKLSIANHVTINKAFL--PKLPCSRRHLLCSPGESAVGRDVVRGI 74
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRR 642
L F G PLG+ GL WLK+HL NL G + R+ F L +I DSAD P+ GRR
Sbjct: 75 LLFARGEPLGEKGLDWLKVHLINL-TGLKKREPASERLKFANKMLPEILDSADNPMTGRR 133
Query: 643 WWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
WW +E+P+Q LA C ++ A+RSP P + H+PVH
Sbjct: 134 WWASSEEPWQTLACCREVAAAVRSPDPRRYVCHLPVH 170
>gi|326424965|ref|YP_004286187.1| putative RNA polymerase [Pseudomonas phage phi15]
gi|325048369|emb|CBZ41982.1| putative RNA polymerase [Pseudomonas phage phi15]
Length = 882
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/480 (25%), Positives = 213/480 (44%), Gaps = 63/480 (13%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
+ + + +AVIT+ ++ + + G+V + A +IG IE EAR F + + A
Sbjct: 102 FIQMVATERVAVITIKTVINAM--SQGDVVLQAIAGRIGRGIEEEAR----FGRIRDQEA 155
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV--RGIVKGHVDS--KPWG 328
+K I+E L KR K+ + V R + G ++ W
Sbjct: 156 -------------KHFKKYIRE--ALNKRNGHTYKRAYMHAVEDRMLEAGELNGAWSDWD 200
Query: 329 QD---ALVKVGCRLIQLLMETA-YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+ + +G R I+ L+E++ ++ G+ D V L+ E L R +
Sbjct: 201 NEDPTIIAHIGLRCIEALIESSGLVRITRRSAGNVKEDCN---VLELEPQWVEMLNQRAF 257
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF---FLPSYVMRTHGARQ 441
+ + + P +VPP W GG++ P+ +R H
Sbjct: 258 TLAGVNTY---------------HQPCVVPPRPWTRPVGGGYWGKGRRPTRFIRVH---- 298
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPL 500
++ ++ +E V++A++ +T W +NKRIL V + + + + ++ E L
Sbjct: 299 NKKALERYRDVDMEAVYKAVNIAQNTAWSINKRILEVAEALASWTNVPISKWPKAETQEL 358
Query: 501 PEKPNTDDETEIKK--WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P KP+ + E + WK + + S + S+R +E L ARK D E Y+PHNL
Sbjct: 359 PVKPHDIETNEEARNAWKKQASGVYRSESSRVSRRMSLETTLETARKFADFEAIYFPHNL 418
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
D+RGR Y + P N DL +G+L+ +G P+G+ G+ WL IH AN GVDK+ ++
Sbjct: 419 DWRGRVYAL-PVFNPQRDDLTKGLLQASKGEPVGEDGIKWLMIHGAN--TAGVDKVPFDE 475
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R + ++ I A+ PL W+ + PF LA C + ++ + +S +P+
Sbjct: 476 RQQWVRDNERTILQCAEDPLTHTE-WMSMDSPFCFLAFCFEWAGVVKDGP--NHVSALPI 532
>gi|321454096|gb|EFX65282.1| hypothetical protein DAPPUDRAFT_264936 [Daphnia pulex]
Length = 399
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 561 RGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRV 620
RGR YP P+L HL D+ R +L F +G PLG G +WLK+H+ NL G + R
Sbjct: 52 RGRVYPCSPHLTHLSHDMARSLLFFAQGKPLGADGFNWLKLHVINL-TGTKKREPISERH 110
Query: 621 AFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP-SPESTISHIPVH 679
A+ E + +I DSAD PL GR+WW+ +++P+Q LA C+ ++ ALR P PE+ H+P+H
Sbjct: 111 AYAEKIMPEILDSADNPLTGRQWWVNSDEPWQTLAACMEVANALRCPEGPEAYGCHLPIH 170
>gi|313892513|ref|ZP_07826102.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
gi|313119092|gb|EFR42295.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
Length = 861
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 129/259 (49%), Gaps = 14/259 (5%)
Query: 410 PMLVPPLNWRGYNRGG--------HFFLPS--YVMRTHGARQQRETIKMTPRSQLEPVFQ 459
PM+VPPL W+ ++GG H F+ + + ++ + K ++ L VF+
Sbjct: 251 PMVVPPLPWKNRHKGGYHGELKRFHSFIRTAKFTWKSCKNYYYDKYKKQLDQTNLTRVFE 310
Query: 460 ALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKV 519
++ + +T W++NK ++ +++++ GG LAGL + P + ++++ K K+
Sbjct: 311 VVNHIQATPWKINKDVMHILEKVIDRGGELAGLPRLQPFEHPPMLKNPTQEQLQEHKKKL 370
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
T K + + + + A+ + Y+PHN+DFRGR YP+ P + G+DL
Sbjct: 371 HTLYKHEASRSGKAIRTFMNFDTAKTYAKYDKIYFPHNIDFRGRIYPI-PTFSPQGNDLN 429
Query: 580 RGVLEFEEGHPLGK-AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
+G+L + PL K L W I A L G+DK+ +E + + ++H I +A P+
Sbjct: 430 KGLLLLADPQPLKKEEDLKWFFIAGAEL--AGIDKVPFEECIKWVQDHEKQIMATAQDPM 487
Query: 639 EGRRWWLGAEDPFQCLATC 657
+ WW + P+Q L C
Sbjct: 488 KNISWWGELDSPWQFLGFC 506
>gi|448937046|gb|AGE60589.1| RNA polymerase [Pelagibacter phage HTVC019P]
Length = 814
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 14/280 (5%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ-RETIKMTPRSQLEPVFQALDTLGS 466
Y+ M++PP + GH + S + +Q+ ++ K + V A++ + S
Sbjct: 236 YLMMVMPPKSVVDGKVTGHGYWTSEMPELDLVKQKGKKFNKEMENCAMPEVTTAVNLMQS 295
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE---IKKWKWKVKTAK 523
T +++N IL V+ W G + G+ +++ LP KP+ D ET +KK+K
Sbjct: 296 TAYKINPFILSVMQNAWDKGLSIGGMPPIKNLDLPNKPH-DIETNPEALKKFKKDSVIVH 354
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+N+ S+R + +A K KD Y+P LDFRGRAY + +LN+ + + +L
Sbjct: 355 TENNRMVSKRLLYAKIIWLAEKFKDYATLYFPLQLDFRGRAYCVPAFLNYQSINGAKALL 414
Query: 584 EFEEGHPLGKA--GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
F +G + K G+ WL +H +N++ G DK+S+E R ++ ++L I + A+ P+ R
Sbjct: 415 NFSQGKAITKENRGVFWLAVHGSNMW--GNDKVSFEDREKWSYDNLQWITECAEDPIANR 472
Query: 642 RWWLGAEDPFQCLATCINLSEALR-SPSPESTISHIPVHM 680
+ W A++PFQ LA C E R + + +SHIPV++
Sbjct: 473 Q-WEDADNPFQFLAFC---DEWKRYQETGDGFVSHIPVNV 508
>gi|89148158|gb|ABD62822.1| mitochondrial single-subunit RNA polymerase [Heterolobosea sp. OSA]
Length = 310
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 79/118 (66%), Gaps = 13/118 (11%)
Query: 574 LGSDLCRGVLEFEEGHPLG-----------KAGLHWLKIHLANLYAGGVDKLSYEGRVAF 622
LGSDL RG+L+F + P+G + G+ WLKIHLANL G DKLS++ R+ +
Sbjct: 1 LGSDLNRGLLKFAKKVPIGAKYDFNYYINTRRGIFWLKIHLANL--CGQDKLSFDDRIKY 58
Query: 623 TENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
++++ +I DSAD PL G+RWWL +E+P+Q LA+C L+ +RSP+PE S IPV M
Sbjct: 59 IDDNISNIMDSADHPLSGKRWWLDSENPWQSLASCFELTNVIRSPTPELFESQIPVQM 116
>gi|266634771|gb|ACY78114.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB1]
Length = 804
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 31/328 (9%)
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEK-TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
F L Y + +PL + + + ++ Y PML+ P++W G GG +L +
Sbjct: 191 FQWAKLDSGMYHIKASEPLAKHFQDAASAARAVVKYPPMLIKPMDWEGQYNGG--YLTEW 248
Query: 433 VMRTH---GAR----QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
G R + + + + E V A++ S +R+NK IL ++ + A
Sbjct: 249 FKHNSPMCGIRFIKKEHKHWVIDNLNNGAELVKAAMNKAQSVPYRINKDILAILRKAVAM 308
Query: 486 GGCLAGLVDQEDVPLPEKPNTDD-------ETEIKK---WKWKVKTAKKQNSEKHSQRCD 535
+ GL + P P P TDD E E+ + WK + + Q +++ ++
Sbjct: 309 RVGILGLPSYQPAPKPAFPFTDDWLKSEATEEELDQFQFWKGLMSSWYTQEAKRVGRQHG 368
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
I ++ K +DEE Y+P +D+RGR Y +N +D +G LEF EG PLGK G
Sbjct: 369 ILSRIQELVKYQDEERLYFPTFIDWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTG 427
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP---FQ 652
L WLKIH+AN G DK + + + +++ + I + + P + + A +P F
Sbjct: 428 LKWLKIHVAN--CCGYDKHDPDLKEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFT 480
Query: 653 CLATCINLSEALRSPSPESTISHIPVHM 680
L + L AL +PES I H+PV M
Sbjct: 481 LLQAGLALQSALELETPESYICHVPVAM 508
>gi|312062870|gb|ADQ12732.1| putative RNA polymerase [Acinetobacter phage phiAB1]
Length = 805
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 31/328 (9%)
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEK-TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
F L Y + +PL + + + ++ Y PML+ P++W G GG +L +
Sbjct: 191 FQWAKLDSGMYHIKASEPLAKHFQDAASAARAVVKYPPMLIKPMDWEGQYNGG--YLTEW 248
Query: 433 VMRTH---GAR----QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
G R + + + + E V A++ S +R+NK IL ++ + A
Sbjct: 249 FKHNSPMCGIRFIKKEHKHWVIDNLNNGAELVKAAMNKAQSVPYRINKDILAILRKAVAM 308
Query: 486 GGCLAGLVDQEDVPLPEKPNTDD-------ETEIKK---WKWKVKTAKKQNSEKHSQRCD 535
+ GL + P P P TDD E E+ + WK + + Q +++ ++
Sbjct: 309 RVGILGLPSYQPAPKPAFPFTDDWLKSEATEEELDQFQFWKGLMSSWYTQEAKRVGRQHG 368
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
I ++ K +DEE Y+P +D+RGR Y +N +D +G LEF EG PLGK G
Sbjct: 369 ILSRIQELVKYQDEERLYFPTFIDWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTG 427
Query: 596 LHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP---FQ 652
L WLKIH+AN G DK + + + +++ + I + + P + + A +P F
Sbjct: 428 LKWLKIHVAN--CCGYDKHDPDLKEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFT 480
Query: 653 CLATCINLSEALRSPSPESTISHIPVHM 680
L + L AL +PES I H+PV M
Sbjct: 481 LLQAGLALQSALELETPESYICHVPVAM 508
>gi|354544408|emb|CCE41131.1| hypothetical protein CPAR2_301200 [Candida parapsilosis]
Length = 1239
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 170/397 (42%), Gaps = 61/397 (15%)
Query: 300 KRVTSLIKK--QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
KR SL+KK K Q + I D K+ L++ ++E+ I V+ G
Sbjct: 404 KRDVSLMKKSDHKSQLFKFI----------SDDDFDKLSSILVKSVIESCMISR-VNAEG 452
Query: 358 DSPPDIRPAFVHTLKSFTKEALKG---RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414
D+ F + +F + + + VI +P++++ + + P+L P
Sbjct: 453 SDADDVASGFTNEDFAFHLDTIYVSPVKSETVINFNPVLKQKVTSIPVGSNSHHFPLLCP 512
Query: 415 PLNWRGYNRGGHF-----FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
P W G N+G + FL + H Q + + +L+ F+ LD +G T W
Sbjct: 513 PEPWLGVNKGAYMERNTPFLSGFDQLQHRILQNAQHL-----GKLDSAFKCLDQMGQTAW 567
Query: 470 RVNKRILGVIDR-MWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSE 528
+N +L V ++ M G L D+P P DE+ +K++ +
Sbjct: 568 AINPDVLSVFNQVMELPNGFL-------DIP----PKHCDES---------TKSKQEIID 607
Query: 529 KHSQRCDIELKLSVARKM-KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
R + E +A ++ + Y+ + DFRGR YP+ P L H G DL R + +F
Sbjct: 608 IKGLRSNFETVNMLANTFDRNGDMLYHCYVFDFRGRVYPLSP-LTHYGGDLTRSLFQFWY 666
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G PLG G +W+K L +++ D F ++ + I SA PL WW+ A
Sbjct: 667 GQPLGVNGFYWVKYQLMSVFGNETDC------EKFYNHNKEQILASASDPLHN-HWWMKA 719
Query: 648 EDPFQCLATCINLSEALR-----SPSPESTISHIPVH 679
++PF L+ CI + + L+ S E I +P+H
Sbjct: 720 DEPFSALSVCIEIQKILQFVQHGKGSIEEYICRLPIH 756
>gi|238695622|ref|YP_002922649.1| P35 [Xanthomonas phage phiL7]
gi|190343989|gb|ACE75775.1| P35 [Xanthomonas phage phiL7]
Length = 804
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 125/508 (24%), Positives = 202/508 (39%), Gaps = 75/508 (14%)
Query: 177 PYVKSLFLGWFEPLRDAIAKDQATAQ---DKWKHMTYAPYFNNLPADMMAVITMHKLVGL 233
PY ++++ + PL + I DQ + K H + PA +AV LV L
Sbjct: 36 PYAQAVYRRFVLPLAEVIKADQNAVKIRGPKPAHRHLIAAVDPEPAAFVAVRA--ALVQL 93
Query: 234 LMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
+ A RV+ ++G+A+ +E + +F +S + K L N+ +L
Sbjct: 94 MGAKADRARVL--ITEVGKAVYHELLLTNF-ESLEPKLFHQLTLGFARRLDMNERYRLNA 150
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV 353
+E+ + + +L + + L R W L +G IQ
Sbjct: 151 YREEAESKGLALPEWEGLDIER--------VGAWVVSELATLGMLTIQT----------- 191
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLV 413
S + V L T + G R V+E P ++P +
Sbjct: 192 ----QSLAKKQRVLVSALTEETSTLISGIREMVVENSPY---------------FLPCVE 232
Query: 414 PPLNWRGYNRGGHFF-----LPSYVMRTH-GARQQRETIKMTPRSQLEPVFQALDTLGST 467
PP+ W ++ GG L Y ++TH G R + +T L+ L T
Sbjct: 233 PPIPWTKHDEGGWHTDEMRRLMPYAIKTHAGVRHLLDLADLTKE------LACLNALQET 286
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP------------NTDDETEIKKW 515
KWR+N+ IL + R+ L ++ Q + P PE+P + D E + W
Sbjct: 287 KWRINRPILEAL-RLMGGKIDLGEVLAQGEEPRPERPEWLGERMKVEAMDVDQAKEFRAW 345
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
K ++ E+ + + VA K + + ++ + DFRGR Y M ++ G
Sbjct: 346 KRLTAKWHRKKKERAVKWGRYRHAMQVATKFVEYDALHFVYFCDFRGRKYAMTTGVSPQG 405
Query: 576 SDLCRGVLEFEEGHPLGKAGLH-WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSA 634
SDL + +L F EG PL G W +I AN Y G DK+ +GR+ + H +DI +A
Sbjct: 406 SDLQKALLHFAEGKPLHTQGAKDWFRITGANRY--GYDKVDLQGRIDWVREHHEDILAAA 463
Query: 635 DRPLEGRRWWLGAEDPFQCLATCINLSE 662
P+ WWL P Q LA C +E
Sbjct: 464 GDPV-ANGWWLKGSKPLQFLAWCFEYAE 490
>gi|320158397|ref|YP_004190775.1| DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 927
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 15/284 (5%)
Query: 408 YMPMLVPPLNWRGYN-RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
Y PM+VPP W R G + P+ + + + ++ + +E V+ AL+ +
Sbjct: 264 YAPMVVPPRKWSPETVRRGAYLTPAGRPLSMIKTRNKSYLRELQTAGMEKVYDALNRIQE 323
Query: 467 TKWRVNKRILGVIDRM------WASGGCLAGL--VDQEDVPLPEKPNT--DDETEIKKWK 516
T R+NK I +D WA L + +D +D P +P D + +K+++
Sbjct: 324 TPVRINKTIYNWLDTFLMQQLPWAMDIGLPAMHKLDIKDYT-PTQPEGLPDSDYRVKEYQ 382
Query: 517 WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576
+ + + S+ + + +A+ D + F+ P D R R YP+ LN G+
Sbjct: 383 KACREFYLMEASERSKLSAMLGMMEMAKSYLDRDRFFVPWQGDTRMRVYPVSK-LNFQGA 441
Query: 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
D + + +F +G LGK GL WL IH+ANL GVDK+++E RV + + H I A
Sbjct: 442 DYVKALCQFADGVALGKHGLKWLMIHMANLM--GVDKVTFEERVKWVKEHKAQIIALAKD 499
Query: 637 PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
P E R + + A+ P Q +A L+EA + E +S+IP+ +
Sbjct: 500 PRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYIPIAL 543
>gi|282554612|ref|YP_003347629.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
gi|262410445|gb|ACY66709.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
Length = 822
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 137/567 (24%), Positives = 230/567 (40%), Gaps = 88/567 (15%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L +RQ+++E + + + L+ D + NLP + + +E AI +
Sbjct: 15 LVKRQLELEETYKIRGIERARKLITDALQNGGIMNLPMTQRMLTSAYEVAAAAI-DEMRN 73
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE-VRVVQAACQIGEAIENEAR 259
+ Y + +P D++ +++ + GE Q A + A+
Sbjct: 74 VKAPGIGGKYRRFLRLIPLDVLTTLSLCTMFEAFSVAPGESASRRQTAQAVMSALGRN-- 131
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
+QS S + +N ++ E LT E+ K T +++ + +
Sbjct: 132 VQSELLSLQLRNVAPAYMDRVYEYLT----------ERRTKSPTHILRTLR-ASAENVHY 180
Query: 320 GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDS----PPDIRPAFVHTLKSFT 375
GH +PW + VG L + ET Q S D+ AF ++S
Sbjct: 181 GH---EPWTNAQNISVGRLLCAAVFETGLFQWKTGSGNLSMLYPADDVMEAFQQLVESAD 237
Query: 376 KEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF-------- 427
+K PMLVPP+ GG+
Sbjct: 238 TVTMKP----------------------------PMLVPPVQHTTMWDGGYLTPIDNRGT 269
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ S++ RT R+ E K + + +AL+ T +R+NKRIL ++ A G
Sbjct: 270 YHNSHIDRTR-LREVAEAFK-----SADGIKKALNKAQETPYRINKRILELVQEARALG- 322
Query: 488 CLAGLVDQEDVP----------LPEKPNTDDETE-IKKWKWKVKTAKKQNSEKHSQRCDI 536
G+ VP +P++ T++E + +WK ++ + ++ SQ +
Sbjct: 323 --IGVGMPRSVPEPKPEWYLDGVPKENYTEEELDRFGEWKTRMSLWYSADRKRVSQLRSL 380
Query: 537 ELKLSVARKMKDEEGFYYPHNLDFRGRAY---PMHPYLNHLGSDLCRGVLEFEEGHPLGK 593
L +A + KDE+ Y+P +D+R R Y +HP GSDL + +LEF G PLG
Sbjct: 381 LTTLEMAEEFKDEKALYFPTCVDWRYRLYFKSSLHPQ----GSDLQKALLEFGRGKPLGD 436
Query: 594 AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC 653
GL WLK+H+A + G DK +E R A+ + + +I P + + A+ P+
Sbjct: 437 RGLFWLKVHVATCF--GYDKTLFEDRAAWVDANFAEIEQLTVSPFDCPA-FTSADSPWCL 493
Query: 654 LATCINLSEALRSPSPESTISHIPVHM 680
LA I+L A+RS PE IS IPV M
Sbjct: 494 LAAAIDLVNAVRSGCPEEHISRIPVAM 520
>gi|229604949|ref|YP_002875649.1| putative RNA polymerase [Vibrio phage VP93]
gi|227976994|gb|ACP44096.1| putative RNA polymerase [Vibrio phage VP93]
Length = 816
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 143/564 (25%), Positives = 236/564 (41%), Gaps = 92/564 (16%)
Query: 144 RQIKIE----TEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQA 199
RQ +IE TEA E++ K D L + +L P V+ L ++ + I + +A
Sbjct: 16 RQERIEETFKTEAIERSRKAVLDALENGRATELTP----VQRLLNAAYDGVSARIDELKA 71
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVG-LLMTNAGEVRVVQAACQIGEAIENEA 258
+ + + Y Y + +D++ V+T++ L+ + T G + +G ++++E
Sbjct: 72 S-KTRGVGAKYRGYIRLVSSDVLTVMTLNTLLNNIASTELGMSSIQSLGTSLGRSVQSEI 130
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
Q N E + N + +KE K R S I + + V
Sbjct: 131 IAQ--------------NAEVVAPAYMNRVYEYLKEH---KTRSQSHILR-TFRAASANV 172
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETA---YIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
K +++ PW VG L+Q + +T ++Q P L P
Sbjct: 173 K--LETDPWDNTTCFNVGRLLLQCVHDTGIFEWVQGPKGLLYAEPA-------------- 216
Query: 376 KEALKGRRYGVIE-CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG--------H 426
E L+G V+E D +V Y PM+VPP+ GG H
Sbjct: 217 -EELQGVFSDVLEHADTMVH-------------YPPMIVPPVRHEDIYNGGYLTDLSRRH 262
Query: 427 FFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG 486
+ ++ R+ R+ E K Q + QAL+ + VN+ I ++ + A+G
Sbjct: 263 TYSNRHIKRSR-LREVNEAFK-----QANGIRQALNKAQEVPYVVNQSIYDLVLQAKATG 316
Query: 487 GCLAGLVDQEDVPLPE---------KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
+ G+ P P+ + DD+ + WK +++ + ++ SQ +
Sbjct: 317 FDV-GIPSHHQKPQPKFHLHGTDKADWSEDDQEAFEVWKTQMRQWYTKERKRVSQIRQLA 375
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
+ L + R+ DE+ Y+P +D+R R Y +LN GSD+ + +L PLGK GL
Sbjct: 376 ITLDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLF 434
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC-LAT 656
WLK H+A + G DK +E R +TE +D I + PL + D F C LA
Sbjct: 435 WLKSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNEDF--KDADEFWCMLAA 490
Query: 657 CINLSEALRSPSPESTISHIPVHM 680
I L EAL SP PE S+I V +
Sbjct: 491 SIQLIEALDSPDPEKYESNIAVAL 514
>gi|441463031|gb|AGC35317.1| putative RNA polymerase [Acinetobacter phage AB3]
Length = 805
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 143/296 (48%), Gaps = 30/296 (10%)
Query: 405 IIPYMPMLVPPLNWRGYNRGGHFF------LPSYVMRTHGARQQRETI-KMTPRSQLEPV 457
++ Y PML+ P++W G GG+ P +R ++ I K+ ++L V
Sbjct: 223 VVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKQWVIDKLNNGAEL--V 280
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ET 510
A++ S +R+NK IL ++ + A + GL + P P P T+D E
Sbjct: 281 KAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPQPAFPFTEDWLKSEATEE 340
Query: 511 EIKK---WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 567
E+ + WK + + Q +++ ++ I ++ K +DEE Y+P +D+RGR Y
Sbjct: 341 ELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELVKYQDEERLYFPTFIDWRGRLY-F 399
Query: 568 HPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHL 627
+N +D +G LEF EG PLGK GL WLKIH+AN G DK + + + +++
Sbjct: 400 RSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDLKEKWCDDNW 457
Query: 628 DDIFDSADRPLEGRRWWLGAEDP---FQCLATCINLSEALRSPSPESTISHIPVHM 680
+ I + + P + + A +P F L + L AL P P + + H+PV M
Sbjct: 458 NYIKNFINNPFD-----VDAPEPDTAFTLLQAGLALQSALALPDPTTYVCHVPVAM 508
>gi|61806414|ref|YP_214191.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
gi|61374339|gb|AAX44193.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
Length = 778
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 204/466 (43%), Gaps = 71/466 (15%)
Query: 206 KHMTYAPYFNNLPAD----MMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQ 261
+H+ PY +L ++ + A IT KL N+ VVQA IG A+E E +++
Sbjct: 73 RHIHLLPYLFSLDSESQGAITAKITFDKLFSPRKDNSKVANVVQA---IGSALEAECQMR 129
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+ +++ G E L + K K +T+L+ K + +
Sbjct: 130 YY----------ESSAPGLFETLKKNYWHQAKGTAYKAKSMTTLMNKHEDLE-------- 171
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE--AL 379
KPW + +KVG + LME++ + F +E
Sbjct: 172 -RWKPWNRIERIKVGTWFLDCLMESS------------------------EWFERELSMH 206
Query: 380 KGRRYGVIECDPLVRKGLEKTGR--HMIIPYM-PMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+G+ + K E+ R + P PML+ P +W + GG++ + + +
Sbjct: 207 RGKTQQFVVPTDKFHKNKEEIIRLAELFSPLAWPMLIEPRDWSPMHDGGYYL--NDLTKC 264
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG---GCLAGLV 493
H ++ + +++ Q E +Q L+ + K+R+N I+ V + + G ++
Sbjct: 265 HEMVRRGKPLRI----QGETTYQFLNEIQKVKYRLNPFIVMVAEELEEREIEVGKFRPVI 320
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ D P P PN +DE K+W+ A+ +N+ + C + ++ R+ KD+E +Y
Sbjct: 321 NHPDPPKP--PNMEDEESRKQWRKDKAIARNKNANEWRISCRTRMTMNCVREFKDKE-YY 377
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
P + D+RGRAYP+ +L +D + ++ F E P+ + G+ WL +A Y G+DK
Sbjct: 378 IPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFAEEAPITEDGMKWLAFQVATTY--GLDK 435
Query: 614 LSYEGRVAFTE--NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
+ E R+ + ++ I A P+ W A++PF+ LA C
Sbjct: 436 ATMEERLDWVNEPENIKLIKRVATDPINNIGDWEAADEPFEFLAGC 481
>gi|265525452|gb|ACY76218.1| predicted protein [Prochlorococcus phage P-SSP7]
Length = 727
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 204/466 (43%), Gaps = 71/466 (15%)
Query: 206 KHMTYAPYFNNLPAD----MMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQ 261
+H+ PY +L ++ + A IT KL N+ VVQA IG A+E E +++
Sbjct: 22 RHIHLLPYLFSLDSESQGAITAKITFDKLFSPRKDNSKVANVVQA---IGSALEAECQMR 78
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+ +++ G E L + K K +T+L+ K + +
Sbjct: 79 YY----------ESSAPGLFETLKKNYWHQAKGTAYKAKSMTTLMNKHEDLE-------- 120
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE--AL 379
KPW + +KVG + LME++ + F +E
Sbjct: 121 -RWKPWNRIERIKVGTWFLDCLMESS------------------------EWFERELSMH 155
Query: 380 KGRRYGVIECDPLVRKGLEKTGR--HMIIPYM-PMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+G+ + K E+ R + P PML+ P +W + GG++ + + +
Sbjct: 156 RGKTQQFVVPTDKFHKNKEEIIRLAELFSPLAWPMLIEPRDWSPMHDGGYYL--NDLTKC 213
Query: 437 HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG---GCLAGLV 493
H ++ + +++ Q E +Q L+ + K+R+N I+ V + + G ++
Sbjct: 214 HEMVRRGKPLRI----QGETTYQFLNEIQKVKYRLNPFIVMVAEELEEREIEVGKFRPVI 269
Query: 494 DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ D P P PN +DE K+W+ A+ +N+ + C + ++ R+ KD+E +Y
Sbjct: 270 NHPDPPKP--PNMEDEESRKQWRKDKAIARNKNANEWRISCRTRMTMNCVREFKDKE-YY 326
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
P + D+RGRAYP+ +L +D + ++ F E P+ + G+ WL +A Y G+DK
Sbjct: 327 IPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFAEEAPITEDGMKWLAFQVATTY--GLDK 384
Query: 614 LSYEGRVAFTE--NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
+ E R+ + ++ I A P+ W A++PF+ LA C
Sbjct: 385 ATMEERLDWVNEPENIKLIKRVATDPINNIGDWEAADEPFEFLAGC 430
>gi|167821777|ref|ZP_02453457.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 91]
Length = 769
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 55/265 (20%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PMLVPP+ W ++ G + L + G R+ E+ E + AL+ L +T++
Sbjct: 224 PMLVPPVPWTTFSTHGGY-LHDQIPAVRGTRRPIES---------EVIVSALNALQATRF 273
Query: 470 RVNKRILGVIDRMWASGGCLAGLV-------DQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
RVN+R+L V + + G V + D P
Sbjct: 274 RVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTP----------------------- 310
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
S + ++ L LS ++ DE+ FY+P NLD+RGR YP ++ G+DLC+G
Sbjct: 311 ---ESMRRAKTIRSALTLSAFVELVDEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGC 367
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG---------RVAFTENHLDDIFDS 633
LEF +G PLG+ G WL IHL NL G DK++ G R A+T + I
Sbjct: 368 LEFADGTPLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESTILRV 425
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCI 658
A P W+ A+ P+Q LA C
Sbjct: 426 AADPRNNME-WMKADKPWQFLAACF 449
>gi|224114299|ref|XP_002332393.1| predicted protein [Populus trichocarpa]
gi|222832716|gb|EEE71193.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Query: 92 ESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETE 151
E +SG++EVQEL + ++ ++ + G+G+ K+ +L+RRQ+KIE E
Sbjct: 62 EDNVSGADEVQELQPEMRKE-------EEHFRRRRLRANPGIGSRKHRVLRRRQVKIEAE 114
Query: 152 AWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
AWE A KEY++LL DMCE LAPNLPY+KSLFLGWFEP DAI ++ + +K++
Sbjct: 115 AWELATKEYKELLKDMCEHNLAPNLPYMKSLFLGWFEPFTDAIEQETEDNECPYKNI 171
>gi|448936997|gb|AGE60541.1| RNA polymerase [Pelagibacter phage HTVC011P]
Length = 880
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 160/365 (43%), Gaps = 54/365 (14%)
Query: 331 ALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD 390
LVKVG + + Y+QP P + +K+F I+ +
Sbjct: 241 GLVKVGNMKLNKMKTVTYVQP------------TPKIIREIKNFN-----------IKNE 277
Query: 391 PLVRKGLEKTGRHMIIPYMPMLVPPLNWR-----GYNRGGHFF--LPSYV---MRTHGAR 440
L K YMPM +PP W GY H F P + +++ ++
Sbjct: 278 ALFPK------------YMPMKMPPRKWTSPFIGGYYGKKHNFENKPKDIINALQSSKSK 325
Query: 441 QQRETIKMTPRSQLEPV-FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL-VDQEDV 498
+R ++ + PV +++++T+ T+W +NK I +I + L L V+ + +
Sbjct: 326 YRRYLEELNNKVHEMPVVYESINTIQETEWVINKPIFDLIKTCMENDFNLGQLPVNPQSM 385
Query: 499 PLPEKP---NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
LP KP T+ E IK WK + + K + S+ + L + A +++ GF+YP
Sbjct: 386 ELPPKPFDIKTNKEALIK-WKREAQHVHKSIGQAMSKFIQVRLVMEEATVLQNIGGFFYP 444
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH-WLKIHLANLYAGGVDKL 614
+ DFR R YP L+ +D R +L+F+ G P+G + I ANLY G VDK
Sbjct: 445 YQFDFRFRIYPKPALLSPQSADYSRALLKFKFGKPMGNNDSYSVFAIAGANLY-GEVDKE 503
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
R + +++ D I +A PLE WW A+ P+ LA I E + S I+
Sbjct: 504 ELPIREQWVKDNTDRIIATATNPLED-TWWASADKPYCFLAWAIEFKEFVASGYSPDFIT 562
Query: 675 HIPVH 679
+P+
Sbjct: 563 TLPIQ 567
>gi|224072667|ref|XP_002335917.1| predicted protein [Populus trichocarpa]
gi|222836347|gb|EEE74754.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD 358
+K+VT LIKKQKL VR IVKG DSKPW DA KVG RLI+LL++TAYIQPP DQL D
Sbjct: 14 RKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLAD 73
Query: 359 SPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
+ + RPAFVHT ++ + E +YGVI
Sbjct: 74 TSSEPRPAFVHTFRTVSYE----NKYGVI 98
>gi|194380978|dbj|BAG64057.1| unnamed protein product [Homo sapiens]
Length = 927
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 20/330 (6%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLAPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRD-RVFWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHL--GSDLCRGVLEFEEGHPLG-KAGLHWLKIHLAN-LYAGGV 611
HN+DFRGR YP P+ H S + L PL + GL ++ +H +A V
Sbjct: 798 HNMDFRGRTYPCPPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHAADV 857
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
++ R F H + I R L R
Sbjct: 858 SVMNQVCREQFVRLHSEPILQDLSRFLVKR 887
>gi|158425231|ref|YP_001526523.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
gi|158332120|dbj|BAF89605.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
Length = 841
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 127/295 (43%), Gaps = 43/295 (14%)
Query: 408 YMPMLVPPLNWR-----GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
++P ++PP W GY+ G LP R R ++ L V+ A++
Sbjct: 233 FLPTIIPPKRWTTPFDGGYHSGLVQRLPFVKTR------NRNYLEELAGRDLSAVYAAVN 286
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPE-------------KPN--TD 507
+ T W+VN+ +L V+ W D+ P+ KP
Sbjct: 287 AMQETPWQVNRDVLRVLKEAW-----------DRDLKSPKLKLPPRDPLDLPPKPADIAT 335
Query: 508 DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 567
+E K+WK N++ S+R I + +A + + Y+P+ LDFRGR Y +
Sbjct: 336 NEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAV 395
Query: 568 HPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
+LN G D + +L F G P+G WL IH AN+Y G DK S E R+++ E
Sbjct: 396 PMFLNPQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVY--GYDKASLEDRISWVEER 453
Query: 627 LDDIFDSADRPL-EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
I A P EG +W A+ P+Q LA C + LR +S +PV +
Sbjct: 454 NALIASVAADPWGEGFEFWTEADKPWQFLAFCFEWAGFLREGF--DYVSTLPVAL 506
>gi|224148781|ref|XP_002336713.1| predicted protein [Populus trichocarpa]
gi|222836570|gb|EEE74977.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 56/67 (83%)
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLV 493
MR HGA+QQRE +K PR QL+PVF+ALDTLG+T+WRVNKR+L V DR+W++GGCLA LV
Sbjct: 1 MRIHGAKQQREAVKTAPRKQLQPVFEALDTLGNTRWRVNKRVLSVGDRIWSNGGCLADLV 60
Query: 494 DQEDVPL 500
D DV +
Sbjct: 61 DHSDVSI 67
>gi|76809902|ref|YP_333056.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254261887|ref|ZP_04952941.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
gi|76579355|gb|ABA48830.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254220576|gb|EET09960.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
Length = 769
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 118/265 (44%), Gaps = 55/265 (20%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PMLVPP+ W ++ G + L + G R+ E+ E + AL+ L +T++
Sbjct: 224 PMLVPPVPWTTFSTHGGY-LHDQIPAVRGTRRPIES---------EVIVSALNALQATRF 273
Query: 470 RVNKRILGVIDRMWASGGCLAGLV-------DQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
RVN+R+L V + + G V + D P
Sbjct: 274 RVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTP----------------------- 310
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
S + ++ L LS ++ +E+ FY+P NLD+RGR YP ++ G+DLC+G
Sbjct: 311 ---ESMRRAKTIRSALTLSAFAELVNEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGC 367
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG---------RVAFTENHLDDIFDS 633
LEF +G LG+ G WL IHL NL G DK++ G R A+T + I
Sbjct: 368 LEFADGTSLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESMILRV 425
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCI 658
A P W+ A+ P+Q LA C
Sbjct: 426 AADPRNNME-WMKADKPWQFLAACF 449
>gi|167841470|ref|ZP_02468154.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|424904041|ref|ZP_18327551.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|390930019|gb|EIP87421.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
Length = 818
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 129/557 (23%), Positives = 214/557 (38%), Gaps = 70/557 (12%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L R Q+++E E E D++ + A PY +++ W PL D I + +
Sbjct: 3 LPRTQVELERETREAGRARAVDMMDRREREGHADTNPYAAAVYRRWLLPLADVIEAEVQS 62
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+ + L +A I + ++ +M +VR A +G + E +
Sbjct: 63 TGKAGRRAAHVALLKPLDPRAVAHIAVRSVLVSVMQADNDVRTT--ARLLGRHVYGELVL 120
Query: 261 QSFFKSTKKKN-ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
+F + A NL L+ R T+ ++ +R
Sbjct: 121 STFAHGKPEIYWALMRNL--------------------LENRSTA--AAHRVNVIRNAAN 158
Query: 320 GH-VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
H V+ W +V LI+ L + D +R L +
Sbjct: 159 SHEVELPQWLPSDREQVALWLIEQLRLLGMV--------DVTKTLRKGLGQRLSTEMDIM 210
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY-MPMLVPPLNWRGYNRGGHFF------LPS 431
L + V+ +R +E T +PY +P + P +W GG+ PS
Sbjct: 211 LTAQAQDVVSS---IRGTVEHT-----MPYSLPFIEQPKDWISMFDGGYHTGMMRRQTPS 262
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
YV T + R T+ + V A++ L + KWRVN+R+L + G +
Sbjct: 263 YVNLT----KNRRTLDAMRDLDMPDVRSAINHLQAVKWRVNQRVLDAVKDCARHGIDMDE 318
Query: 492 LVDQEDVPLPEKPN--TDDE----------TEIKKWKWKVKTAKKQNSEKHSQRCDIELK 539
++ Q + P P +P TDD E WK ++ + ++ +
Sbjct: 319 IISQAEQPKPPRPEWLTDDMRKEDMTGDELVEFSGWKRRMAEWHTDRKLRGTRWGRFYMA 378
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK-AGLHW 598
+A K K+ Y+ + DFRGR Y ++ GSDL + +L+F EG L + W
Sbjct: 379 TRMADKFKEYPAIYFLYQADFRGRLYAQTTGISPQGSDLQKSLLQFAEGKRLDTPEAVRW 438
Query: 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
KI AN + GVDK+ +E R+A+ I A P+ R W A+ P Q LA C
Sbjct: 439 FKIAGANRF--GVDKVPFEDRIAWVNQREQFILQFAADPVSHRE-WQDADSPLQFLAWCF 495
Query: 659 NLSEALRSPSP-ESTIS 674
++ +SP ES I+
Sbjct: 496 EYADWRQSPDTFESRIA 512
>gi|167564987|ref|ZP_02357903.1| DNA-directed RNA polymerase [Burkholderia oklahomensis EO147]
Length = 565
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%)
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDET--EIKKW 515
+AL+ + T+WR+N+ +L V G ++G E++PLPE P D+T E K
Sbjct: 38 LEALNHIQKTRWRINRDVLDVAMGCKVRGLEVSGFPSAEEIPLPEYPAHLDKTSPEFKTH 97
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+ + +N+ R + L +A ++ D ++PH DFRGR YP L+ G
Sbjct: 98 IRERERIHTENARNAGMRLKLWGLLQMAEELADFPALWFPHYADFRGRFYPRPQDLHTQG 157
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
L +G+LEF E + G +W+++++AN + G DKL + R +T +HL+ I A
Sbjct: 158 DSLVKGLLEFSEPVAITDRGWYWMRVNVANYF--GQDKLPLDERAQWTLDHLEGILAVAT 215
Query: 636 RPLEGRR---WWLGAEDPFQCLATC 657
PL+ + +W + P++ LA C
Sbjct: 216 DPLDDHKAFEFWSTCDSPWEFLAAC 240
>gi|225626353|ref|YP_002727849.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
gi|225594862|emb|CAX63147.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
Length = 816
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 22/288 (7%)
Query: 411 MLVPPLNWRGYNRGGHFFLPS-----YVMRT-HGARQQRET-IKMTPRSQLEPVFQALDT 463
ML PP W+ + GG++ + V RT H ++ R+ ++ R ++ V++A++
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNV 292
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ETEIKKW- 515
L S + +N + +I+R++ SGG + G+ + PE P D+ E E++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNH 573
+WK ++ + + + + ++ R +++ G Y+P ++D RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
GSD+ + L F E LGK GL+WLK+H+AN + G DK+ ++ R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 634 ADR-PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
D P + AE P +A + L A S +PE S VHM
Sbjct: 469 LDEGPENYPSLFPEAESPLCAIAGLLELRAAYASGNPEGYASGFIVHM 516
>gi|83571724|ref|YP_424976.1| putative RNA polymerase [Enterobacteria phage K1E]
gi|83308175|emb|CAJ29407.1| gp7 protein [Enterobacteria phage K1E]
Length = 875
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/501 (23%), Positives = 209/501 (41%), Gaps = 76/501 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
+ N + ++ A ITM ++ +L T +V + A + + IE++ R
Sbjct: 77 FINCVGNEVAAYITMKIVMDMLNT---DVTLQAIAMNVADRIEDQVRF------------ 121
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDAL 332
+ LEG + +K +K + R + + V + W +D L
Sbjct: 122 --SKLEGHAAKYFEKVKKSLKASKTKSYRHAHNVAVVAEKSVADRDADFSRWEAWPKDTL 179
Query: 333 VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV--IECD 390
+++G L+++L + + +P F+ TL++ G ++GV ++
Sbjct: 180 LQIGMTLLEILENSVFFNG------------QPVFLRTLRT------NGGKHGVYYLQTS 221
Query: 391 PLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
V + + H+ + P Y P ++PP W GG F R + RE ++
Sbjct: 222 EHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGNREHVR 280
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLVDQEDVP--- 499
+ Q+ V++A++ L +TKW+VNK +L V++ R+ G L+D+E+ P
Sbjct: 281 KLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENKPANP 340
Query: 500 ------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
L E + WK + +++ S+ + ARK
Sbjct: 341 VPLEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYS 400
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANL 606
+ Y+ + LD R R Y L+ +DL + +L F EG L A L W ++ AN
Sbjct: 401 QFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLVNGANN 460
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQCLATCINLS 661
+ G DK +++ R A N LD F D A PL + W+ A+ P+ LA C +
Sbjct: 461 W--GWDKKTFDVRTA---NVLDSEFQDMCRDIAADPLTFTQ-WVNADSPYGFLAWCFEYA 514
Query: 662 ---EALRSPSPESTISHIPVH 679
+AL + + ++H+PVH
Sbjct: 515 RYLDALDEGTQDQFMTHLPVH 535
>gi|108862033|ref|YP_654105.1| putative RNA polymerase [Enterobacteria phage K1-5]
gi|19338936|gb|AAL86891.1|AF478466_1 putative RNA polymerase [Enterobacteria phage K1-5]
Length = 875
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/501 (23%), Positives = 209/501 (41%), Gaps = 76/501 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
+ N + ++ A ITM ++ +L T+ V + A + + IE++ R
Sbjct: 77 FINCVENEVAAYITMKIVMDMLNTD---VTLQAIAMNVADRIEDQVRF------------ 121
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDAL 332
+ LEG + +K +K + R + + V + W +D L
Sbjct: 122 --SKLEGHAAKYFEKVKKSLKASKTKSYRHAHNVAVVAEKSVADRDADFSRWEAWPKDTL 179
Query: 333 VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV--IECD 390
+++G L+++L + + +P F+ TL++ G ++GV ++
Sbjct: 180 LQIGMTLLEILENSVFFNG------------QPVFLRTLRT------NGGKHGVYYLQTS 221
Query: 391 PLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
V + + H+ + P Y P ++PP W GG F R + RE ++
Sbjct: 222 EHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGNREHVR 280
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLVDQEDVP--- 499
+ Q+ V++A++ L +TKW+VNK +L V++ R+ G L+D+E+ P
Sbjct: 281 KLTKKQMPEVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENKPANP 340
Query: 500 ------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
L E + WK + +++ S+ + ARK
Sbjct: 341 VPLEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYS 400
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANL 606
+ Y+ + LD R R Y L+ +DL + +L F EG L A L W ++ AN
Sbjct: 401 QFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLVNGANN 460
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQCLATCINLS 661
+ G DK +++ R A N LD F D A PL + W+ A+ P+ LA C +
Sbjct: 461 W--GWDKKTFDVRTA---NVLDSEFQDMCRDIAADPLTFTQ-WVNADSPYGFLAWCFEYA 514
Query: 662 ---EALRSPSPESTISHIPVH 679
+AL + + ++H+PVH
Sbjct: 515 RYLDALDEGTQDQFMTHLPVH 535
>gi|158345053|ref|YP_001522818.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
gi|114796406|emb|CAK25962.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
Length = 816
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 22/288 (7%)
Query: 411 MLVPPLNWRGYNRGGHFFLPS-----YVMRT-HGARQQRET-IKMTPRSQLEPVFQALDT 463
ML PP W+ + GG++ + V RT H ++ R+ ++ R ++ V++A++T
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQIQLRHLGRDKMPRVYEAVNT 292
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ETEIKKW- 515
L S + +N + +IDR++ SGG + G+ + PE P D+ E E++ +
Sbjct: 293 LQSVAYEINHDVYEIIDRVFTSGGGVLGIPKRTYPDKPEFPLGDEWSKENASEQELESFN 352
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNH 573
+WK ++ + + + + ++ R +++ G Y+P ++D RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
GSD+ + L F E LGK GL+WLK+H+AN + G DK+ ++ R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 634 ADR-PLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
+ P + E P +A + L A S +PE S VHM
Sbjct: 469 LEEGPENYPNLFPEDESPLCAIAGLLELRAAYASGNPEGYASGFIVHM 516
>gi|148724458|ref|YP_001285424.1| RNA polymerase [Cyanophage Syn5]
gi|145588103|gb|ABP87922.1| RNA polymerase [Synechococcus phage Syn5]
Length = 779
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 120/531 (22%), Positives = 221/531 (41%), Gaps = 68/531 (12%)
Query: 139 YMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ 198
+ L RQ++ ETEA E A K QD + E+ A + + + +P+ I +
Sbjct: 3 FDLIARQLQRETEAAELARKRLQDARREANERSYASSNIESRKAIATFLDPIAQRIGERL 62
Query: 199 AT---------AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
T A + +KH+ A + + +A+ITM + +L + E ++ Q
Sbjct: 63 FTLRRGTGAVDAAEVYKHLKNADHHH------LALITMKTALDVLGKDP-EPQIQQLTTA 115
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IG I+ E R+ + + +PE L K+ + T +K
Sbjct: 116 IGRNIQLELRLTYYAEE--------------------NPE-LYKQASRFFHAGTGTRQKA 154
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFV 368
+ +++ +G ++ W + KVG L+ + + T +I+ D+
Sbjct: 155 TVIKLKFNREG-IEWDQWSRVTCHKVGQWLMLAMADVTGWIERATDRTSGGRK------T 207
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
T +++E L+ R + + PML PP+ W + GG +
Sbjct: 208 KTRICYSREFLQHR------------DTILAAAEQLAFCQWPMLCPPIEWSNDHNGG--Y 253
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
L + R + R+T + R Q + L+ L ++VN +L + + + S
Sbjct: 254 LSEQIRRVNPL--IRKTGPLGTRKQGDIPLAMLNNLQGQAYKVNPEVLDIANHCYESNVT 311
Query: 489 LAGLVDQEDVPLPEKPNTD-DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ + +P+P P D E ++ +K + A+ N++ + + VARK
Sbjct: 312 VGKFIRHAPLPVPPSPGEDCTEDQLTAYKRARREAEDFNAQISQKNWRTTEVMYVARKYA 371
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
DE F+ P + D+RGR Y ++ LN G+D + +L F E P+ + WL H+A Y
Sbjct: 372 DEASFWMPASFDYRGRVYFLNTALNPQGTDFDKALLYFAEEGPVNE---WWLSFHVATTY 428
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
G+DK + RV + ++ + I A P+ W A++P+ LA C+
Sbjct: 429 --GLDKETMVNRVQWARDNHELIDRIASDPVRHTE-WHDADEPWCFLAACL 476
>gi|197935879|ref|YP_002213715.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
gi|197927042|dbj|BAG70384.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
Length = 805
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 27/292 (9%)
Query: 408 YMPMLVPPLNWRGYNRGGH------FFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQAL 461
+MP + PP W N GG+ + +P V+ H + + V A+
Sbjct: 220 HMPCIEPPKPWTSLNEGGYHSKEMRYIMPHCVVMRH--VKSPALLDELRAHNWGTVLTAI 277
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN---------TDDETEI 512
+ L T W++N +L I + A + +V Q + P P KP+ DE ++
Sbjct: 278 NALQQTAWQINGEMLQTILTV-AKHHNMDEIVSQAESPKPGKPDWLADDMKKEDMDEDQL 336
Query: 513 KKWK-WKVKTAKKQNSEK--HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
+++ WK + A+ K ++ VA +MKD E Y+ + DFRGR Y
Sbjct: 337 REFHMWKREMAQWHTDRKLQGTKWGRFYTATRVANEMKDYESIYFTYQADFRGRLYAQTT 396
Query: 570 YLNHLGSDLCRGVLEFEEGHPLG-KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
++ GSDL + +L F +G PLG A + W KI+ AN + GVDK+ Y R+A+ + H
Sbjct: 397 GVSPQGSDLQKSLLRFAKGLPLGTDAAVQWFKINGANRF--GVDKVPYAERIAWVDEHAA 454
Query: 629 DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
I AD P+ W A+ P Q LA + R P+ + +S I V M
Sbjct: 455 RIIAMADDPVSNFG-WAEADSPLQFLAWAKEFARWKRDPA--NFVSQIAVGM 503
>gi|372217683|ref|YP_005087365.1| RNA polymerase [Cyanophage P-SSP2]
gi|310005846|gb|ADP00231.1| RNA polymerase [Cyanophage P-SSP2]
Length = 733
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 166/356 (46%), Gaps = 38/356 (10%)
Query: 310 KLQQVRGIVKGH--VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF 367
K + ++ I+ H + KPW ++ VK+G L+ L ++ V++ + D AF
Sbjct: 110 KRKSMQTIMNKHDIIPWKPWTREWKVKLGGFLLNCLARSSGWFESVEKKIGNKSD---AF 166
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
V T F K + R + PL + PML+ P +W + GG++
Sbjct: 167 VITTDEFNKHKEEIVRITEL-FSPLTK---------------PMLIEPRDWTTLDDGGYY 210
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGG 487
+ + H ++ E + R Q + +Q L+ + K+R++ I+GV +
Sbjct: 211 L--NQLTNCHEMVRRGEQL----RIQGKTTYQFLNQIQKVKYRLSDFIVGVAKELEEKEI 264
Query: 488 CLAGLVDQEDVPLPEKP---NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
+ + P+P KP +T+ E++ K+WK + A +N+ + C + ++ R
Sbjct: 265 EVGKFRPVINHPIPAKPADFDTNKESK-KQWKREAGIAHNKNANEWRISCRTRMTMNCVR 323
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
+ + ++ +Y P + D+RGRAYP+ +L +D + +L F E + + G+ WL +A
Sbjct: 324 EFEGKD-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRFSEESEITEDGMKWLAFQVA 382
Query: 605 NLYAGGVDKLSYEGRVAFT---ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
Y G+DK + E R+A+ EN L I A P+ W A++P+Q LA C
Sbjct: 383 TTY--GLDKATMEERLAWVGKRENIL-LIIRVATDPVNNIGDWEAADEPWQFLAAC 435
>gi|414087588|ref|YP_006987773.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
gi|383396018|gb|AFH19836.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
Length = 875
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 115/501 (22%), Positives = 208/501 (41%), Gaps = 76/501 (15%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
+ N + ++ A ITM ++ +L T+ V + A + + IE++ R
Sbjct: 77 FINCVENEVAAYITMKIVMDMLNTD---VTLQAIAMNVADRIEDQVRF------------ 121
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDAL 332
+ LEG + +K +K + R + + V + W +D L
Sbjct: 122 --SKLEGHAAKYFEKVKKSLKASKTKSYRHAHNVAVVAEKSVADRDADFSRWEAWPKDTL 179
Query: 333 VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV--IECD 390
+++G L+++L + + +P F+ TL++ G ++GV ++
Sbjct: 180 LQIGMTLLEILENSVFFNG------------QPVFLRTLRT------NGGKHGVYYLQTS 221
Query: 391 PLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
V + + H+ + P Y P ++PP W GG F R + RE ++
Sbjct: 222 EHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGSREHVR 280
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLVDQEDVP--- 499
+ Q+ V++A++ L +TKW+VNK +L V++ R+ G L+D+E+ P
Sbjct: 281 KLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENKPANP 340
Query: 500 ------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
L E + WK + +++ S+ + ARK
Sbjct: 341 VPLEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYS 400
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANL 606
+ Y+ + LD R R Y L+ +DL + +L F EG L L W ++ AN
Sbjct: 401 QFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSTEALKWFLVNGANN 460
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQCLATCINLS 661
+ G DK +++ R A N LD F D A PL + W+ A+ P+ LA C +
Sbjct: 461 W--GWDKKTFDVRTA---NVLDGEFQDMCRDIAADPLTFTQ-WVNADSPYGFLAWCFEYA 514
Query: 662 ---EALRSPSPESTISHIPVH 679
+AL + + ++H+PVH
Sbjct: 515 RYLDALDEGTQDQFMTHLPVH 535
>gi|167600472|ref|YP_001671971.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
gi|161168335|emb|CAP45499.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
Length = 815
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 28/291 (9%)
Query: 411 MLVPPLNWRGYNRGGHFFLPS-----YVMRT-HGARQQRET-IKMTPRSQLEPVFQALDT 463
ML PP W + GG++ + V RT H ++ R+ ++ R ++ V++A++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ETEIKKW- 515
L S + +N + +I+R++ SGG + G+ + PE P D+ E E++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNH 573
+WK ++ + + + + ++ R +++ G Y+P ++D RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
GSD+ + L F E LGK GL+WLK+H+AN + G DK+ ++ R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 634 ADRPLEGRRWWLGA----EDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
D EG + G E P +A + L A S PE S VHM
Sbjct: 469 LD---EGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHM 516
>gi|195546732|ref|YP_002117810.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
gi|165880741|gb|ABY70996.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
Length = 815
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 28/291 (9%)
Query: 411 MLVPPLNWRGYNRGGHFFLPS-----YVMRT-HGARQQRET-IKMTPRSQLEPVFQALDT 463
ML PP W + GG++ + V RT H ++ R+ ++ R ++ V++A++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ETEIKKW- 515
L S + +N + +I+R++ SGG + G+ + PE P D+ E E++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNH 573
+WK ++ + + + + ++ R +++ G Y+P ++D RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
GSD+ + L F E LGK GL+WLK+H+AN + G DK+ ++ R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 634 ADRPLEGRRWWLGA----EDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
D EG + G E P +A + L A S PE S VHM
Sbjct: 469 LD---EGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHM 516
>gi|291334905|gb|ADD94542.1| DNA directed RNA polymerase [uncultured phage MedDCM-OCT-S08-C159]
Length = 584
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 19/278 (6%)
Query: 399 KTGRHMIIPYMPMLVP----PLNWRGYNRGGHFF--LPSYVMRTHGARQQRETIKMTPRS 452
+ GR I P+L P P W N GG++ L + ++T R++IK
Sbjct: 3 RKGRSNRIAAYPLLQPCFDKPRPWTSINDGGYYTKRLQTRAIKT----TDRDSIKRLQEE 58
Query: 453 QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP---NTDDE 509
L +AL T W VNK +L ++ W + L+D+E LP KP +T+ +
Sbjct: 59 NLSTSLKALTLASQTAWTVNKFVLEILVYCWEERIEVGSLIDRELAELPTKPLDIDTNPD 118
Query: 510 TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
+ K+W++ N+ S+R I + A+K DE+ F++ + D+ GR YP+
Sbjct: 119 SR-KEWRYLASLIHDMNAHNKSKRYQILSMIDTAQKYSDEK-FFHVYQFDWTGRMYPVTA 176
Query: 570 YLNHLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
+ + G+D+ RG+ F +G + K L+WL I AN + G++K SYE R+ +
Sbjct: 177 HFHPQGNDIARGLHIFHKGAAINNKKQLNWLAIAGANHW--GLNKESYEERLEWAYIAGT 234
Query: 629 DI-FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
D+ D P+ W A++P+Q L C +E R
Sbjct: 235 DLALQIYDDPIAHVDIWGKAKEPWQFLGWCKEWAEYQR 272
>gi|357620935|gb|EHJ72947.1| hypothetical protein KGM_20967 [Danaus plexippus]
Length = 1027
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 108/236 (45%), Gaps = 38/236 (16%)
Query: 409 MPMLVPPLNWRGYNRGGHFFL--------PSYVMRTHGARQQRETIKMTPRSQLEPVFQA 460
+P PP W G L P YVM G ++ E P + + PV
Sbjct: 802 VPARSPPAPWHSATASGACLLTTTSLIRMPFYVM---GLTKRLEE---APPATMYPVLDG 855
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPNTDDETEIKKWKWKV 519
L+ LG W +N+RIL + +++ SGG D++ D+P P + +WK +
Sbjct: 856 LNQLGDVPWVINQRILDLQLKVFRSGG------DKKLDIPPPAS-----SLDASQWKMEG 904
Query: 520 KTA----------KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
KT + ++ HS CD KLS+A ++ F+ PHN+DFRGR Y + P
Sbjct: 905 KTGGEALRRRVVINRAKADMHSLWCDALYKLSLANHYRNV-TFWLPHNMDFRGRVYAVGP 963
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
+++ LG D R +L PLG GL WLKIH NL G + + E R + N
Sbjct: 964 HVSALGPDAARALLRLAGVRPLGARGLDWLKIHAVNL-TGTKKRSTVEERYRYLFN 1018
>gi|33300837|ref|NP_877465.1| putative DNA-dependent RNA polymerase [Pseudomonas phage phiKMV]
gi|195546670|ref|YP_002117751.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|387935474|ref|YP_006299950.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
gi|33284808|emb|CAD44217.1| putative DNA-dependent RNA polymerase [Enterobacteria phage phiKMV]
gi|158187631|gb|ABW23108.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|378407720|gb|AFB83282.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
Length = 816
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 143/288 (49%), Gaps = 22/288 (7%)
Query: 411 MLVPPLNWRGYNRGGHFFLPS-----YVMRT-HGARQQRET-IKMTPRSQLEPVFQALDT 463
ML PP W + GG++ + V RT H ++ R+ ++ + ++ V++A++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQAQLRHLGQDKMPKVYEAVNV 292
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD-------ETEIKKW- 515
L S + +N+ + +I+R++ SGG + G+ + PE P D+ E E++ +
Sbjct: 293 LQSVAYEINRDVYEIIERVFNSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNH 573
+WK ++ + + + + ++ R +++ G Y+P ++D RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
GSD+ + L F + LGK GL+WLK+H+AN + G DK+ ++ R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHDKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 634 -ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
A+ P + AE P +A + L A S +PE S VHM
Sbjct: 469 LAEGPENYPGLFPEAESPLCAIAGLLELRAAYASGNPEGYRSGFIVHM 516
>gi|224114325|ref|XP_002332398.1| predicted protein [Populus trichocarpa]
gi|222832721|gb|EEE71198.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 13/125 (10%)
Query: 222 MAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKK----NATDN 275
M+VI MH+L ++MT G RV AAC IG+AIE E RI + + T+KK N + N
Sbjct: 1 MSVIAMHQLAAMVMTGGEHGCARVGTAACMIGDAIEQEIRIHNILEKTRKKKEKANDSKN 60
Query: 276 NLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKV 335
+EG+S + +KEQE L+K+VT LIKKQKL VR IVK DSKPW DA KV
Sbjct: 61 GVEGESPAV-------MKEQENLRKKVTDLIKKQKLPAVRKIVKAKDDSKPWNADARAKV 113
Query: 336 GCRLI 340
LI
Sbjct: 114 ITILI 118
>gi|133451|sp|P06221.1|RPOL_BPSP6 RecName: Full=DNA-directed RNA polymerase
gi|15463|emb|CAA68288.1| unnamed protein product [Shigella phage Sf6]
Length = 874
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 118/510 (23%), Positives = 215/510 (42%), Gaps = 95/510 (18%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQA-ACQIGEAIENEARIQSFFKSTKKKN 271
+ + ++ A ITM ++ +L T+A +QA A + E IE++ R
Sbjct: 77 FLQCVENEVAAYITMKVVMDMLNTDA----TLQAIAMSVAERIEDQVRF----------- 121
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK--QKLQQVRGIVKGHVDSK---- 325
+ LEG + K EK+KK + + K + V + + V K
Sbjct: 122 ---SKLEGHAA----------KYFEKVKKSLKASRTKSYRHAHNVAVVAEKSVAEKDADF 168
Query: 326 ----PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
W ++ +++G L+++L + + P F+ ++++ G
Sbjct: 169 DRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRAMRTY-----GG 211
Query: 382 RRYGVIECDPLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ ++ V + + H+ + P Y P ++PP WR GG F R
Sbjct: 212 KTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGG-FHTEKVASRIRL 270
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLV 493
+ RE ++ + Q+ V++A++ L +T+W++NK +L VI+ R+ G L+
Sbjct: 271 VKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLDLGYGVPSFKPLI 330
Query: 494 DQEDVP---------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
D+E+ P L E + + + WK + +++ S+ +
Sbjct: 331 DKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYTAETKRGSKSAAVVR 390
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLH 597
+ ARK E Y+ + +D R R Y L+ +DL + +L F EG P+ G L
Sbjct: 391 MVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLRFTEGRPVNGVEALK 450
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQ 652
W I+ ANL+ G DK +++ RV+ N LD+ F D A PL + W A+ P++
Sbjct: 451 WFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCRDIAADPLTFTQ-WAKADAPYE 504
Query: 653 CLATCINLSEAL---RSPSPESTISHIPVH 679
LA C ++ L + +H+PVH
Sbjct: 505 FLAWCFEYAQYLDLVDEGRADEFRTHLPVH 534
>gi|31711650|ref|NP_853568.1| DNA-directed RNA polymerase [Enterobacteria phage SP6]
gi|31505654|gb|AAP48747.1| gp8 [Enterobacteria phage SP6]
gi|40787026|gb|AAR90000.1| 7 [Enterobacteria phage SP6]
Length = 874
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 118/510 (23%), Positives = 215/510 (42%), Gaps = 95/510 (18%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQA-ACQIGEAIENEARIQSFFKSTKKKN 271
+ + ++ A ITM ++ +L T+A +QA A + E IE++ R
Sbjct: 77 FLQCVENEVAAYITMKVVMDMLNTDA----TLQAIAMSVAERIEDQVRF----------- 121
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK--QKLQQVRGIVKGHVDSK---- 325
+ LEG + K EK+KK + + K + V + + V K
Sbjct: 122 ---SKLEGHAA----------KYFEKVKKSLKASRTKSYRHAHNVAVVAEKSVAEKDADF 168
Query: 326 ----PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
W ++ +++G L+++L + + P F+ ++++ G
Sbjct: 169 DRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRAMRTY-----GG 211
Query: 382 RRYGVIECDPLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ ++ V + + H+ + P Y P ++PP WR GG F R
Sbjct: 212 KTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGG-FHTEKVASRIRL 270
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLV 493
+ RE ++ + Q+ V++A++ L +T+W++NK +L VI+ R+ G L+
Sbjct: 271 VKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLDLGYGVPSFKPLI 330
Query: 494 DQEDVP---------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
D+E+ P L E + + + WK + +++ S+ +
Sbjct: 331 DKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYTAETKRGSKSAAVVR 390
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLH 597
+ ARK E Y+ + +D R R Y L+ +DL + +L F EG P+ G L
Sbjct: 391 MVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLRFTEGRPVNGVEALK 450
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQ 652
W I+ ANL+ G DK +++ RV+ N LD+ F D A PL + W A+ P++
Sbjct: 451 WFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCRDIAADPLTFTQ-WAKADAPYE 504
Query: 653 CLATCINLSEAL---RSPSPESTISHIPVH 679
LA C ++ L + +H+PVH
Sbjct: 505 FLAWCFEYAQYLDLVDEGRADEFRTHLPVH 534
>gi|149940226|emb|CAJ13817.1| DNA-directed RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 174
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 163 LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222
++ DMCEQKLAPNLPYVKSLFLGWFEPL++AI+ +Q ++ YAP F+ LPADMM
Sbjct: 106 MMTDMCEQKLAPNLPYVKSLFLGWFEPLKNAISGEQDLCKEGKNRGAYAPQFDQLPADMM 165
Query: 223 AVITMHKLV 231
+ITMHKL+
Sbjct: 166 TIITMHKLM 174
>gi|388549265|gb|AFK66464.1| DNA-directed RNA polymerase [Synechococcus phage S-CBP3]
Length = 776
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 178/426 (41%), Gaps = 60/426 (14%)
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
++V IG+A+E E +++ + +S + L ND +KKR
Sbjct: 107 QLVDVCAAIGQAVEAECQMRHYERS--------------APGLLND----------IKKR 142
Query: 302 V--TSLIKKQKLQQVRGIVKGH-VDS-KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
S +Q+L V+ ++ H VD +PWG+ VK+G L+ + E V Q
Sbjct: 143 YWHASCGTQQRLTVVKTMMNRHEVDPWEPWGRHNRVKLGGWLLDAIAE-------VSQWF 195
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPL-VRKGLEKTGRHMIIPYMPMLVPPL 416
+ KS +E K Y V + + VR + + PMLVPP
Sbjct: 196 E-------------KSTVQEGQKTVNYVVPTAEFMAVRDQIMRDAELFAPIAWPMLVPPN 242
Query: 417 NWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRIL 476
+W GG+ + VM HG R + PR Q + L+ + + +N I+
Sbjct: 243 DWSNERAGGYIL--NEVM--HGYDLVR---RGGPRIQGKAPIDFLNKIQRVAYTLNPFIV 295
Query: 477 GVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR--C 534
V + + + V + LP KP E + ++ + A+ N+ H+ R C
Sbjct: 296 EVAETLQERQTQVGKFVPIVSLDLPPKPVDIAENYEARKDYRRRAAETMNTNAHAFRRSC 355
Query: 535 DIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA 594
+ + + K+ + FY P + D+RGRAYP+ +L +D + +L F + +
Sbjct: 356 RTRMTMEAVARFKNVDRFYVPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRFADESYMTHE 415
Query: 595 GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCL 654
WL+ A Y G+DK R+A+ + + I A P++ W A++P+Q L
Sbjct: 416 AEDWLRFQCATTY--GLDKAPMSERLAWAHENEELIKRIAKHPIDCLSEWEVADEPWQFL 473
Query: 655 ATCINL 660
A C L
Sbjct: 474 AACDEL 479
>gi|158297512|ref|XP_317735.4| AGAP007778-PA [Anopheles gambiae str. PEST]
gi|157015231|gb|EAA12908.5| AGAP007778-PA [Anopheles gambiae str. PEST]
Length = 869
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 15/265 (5%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
+ S W + A++ VG L +L I + + PAF +TL + + K
Sbjct: 611 IQSVAWPKAAVMGVGKFLYNILKCDLKINVNATNKANRKVKLVPAF-YTLFRYEAKMAKE 669
Query: 382 RRYGVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
+ I+ P++ K K+ + + +PML PP W GG+ S ++R H
Sbjct: 670 Q----IKPHPVLMKLYRKSQPDTLKFDVNLVPMLCPPQPWSTPRNGGYILAESDLIRLPH 725
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
A QQ E I + P AL+ L S W VN +IL VI ++ +GG V +
Sbjct: 726 QAHQQTERIDDAEPQDMYPTLDALNQLASIPWVVNGQILDVIVEVFNNGGNAKLDVPEPP 785
Query: 498 VPLPEKPNTDDETEIKKWK-----WKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGF 552
LP T +E+ ++ K +++ + +S CD +LS+A +D+ F
Sbjct: 786 SSLPPVTETVPRSEMSGYEKYHLLRKRLYHRRKQGDMYSLWCDALYRLSLASHYRDK-VF 844
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSD 577
+ P N+DFRGR YP+ P+LNHLG D
Sbjct: 845 WLPQNIDFRGRVYPIPPHLNHLGHD 869
>gi|431809442|ref|YP_007236337.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
gi|398313522|emb|CCI88870.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
Length = 817
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/476 (21%), Positives = 196/476 (41%), Gaps = 55/476 (11%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y+P ++L D +A+IT++ L+G GE+++ A IG + E + F
Sbjct: 73 YSPLLHSLDPDAVALITINTLLGSFQARDGEIQLSTLAYSIGRNVYGELALAHF------ 126
Query: 270 KNATDNNLEGD-SEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
+++ D E LT+D ++ K L+ ++T + K + +++ W
Sbjct: 127 -----RDMKPDLYETLTSDLQQ--KMSRDLRHKLTIFRMQAK--------ENNIELPEWT 171
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIE 388
++VG L+ L+ T+ + + + ++ +L + + Y +I
Sbjct: 172 PSQKLQVGVYLLSLIDGTSGHDVFLCNMNLRQSGNKTKYMISLSENIQHIMGDLEYSLIN 231
Query: 389 CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF--LPSYVMRTHGARQQRETI 446
+ G P + PP +W G + G F L +R + I
Sbjct: 232 -----KSGFAA----------PCIYPPQDWTGEDGVGGFHGDLKIRAVRFFKGSSYQWEI 276
Query: 447 KMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT 506
T L+ T W+VN IL ++ M G + P +P+
Sbjct: 277 MNTLGCDNTKTLAMLNAHQRTAWKVNPFILNLVTEMRKRGRETKTVATLAAHKKPTRPDF 336
Query: 507 DDETEIKKW---------KWKVKTAKKQNSEKHSQRCDIELKLSV--ARKMKDEEGFYYP 555
D + K + +WK +T K R ++ L L+V A++M + F++
Sbjct: 337 LDLKDTKDFTHAEFKEFAQWKAETRDWHTKTKKVTRVELRLHLAVEAAKEMLGYDEFFFV 396
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGK-AGLHWLKIHLANLYAGGVDKL 614
+ +D R RAYP+ LN GSD+ + +L G P+ L+W K+ +A+ + G+DKL
Sbjct: 397 YQVDSRVRAYPVSGPLNPQGSDVQKALLHAAHGEPIDTPEALYWFKLTIASKF--GIDKL 454
Query: 615 SYEGRVAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLATCINLSEALRSPS 668
+ + + +++ D+I + P + WW A+ P Q +A C S ++ +
Sbjct: 455 APLECIKWVDDNHDNILKAVCDPCDRDAYLWWSAADKPMQFIALCDEYSRFIKDTA 510
>gi|456351031|ref|YP_007500985.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
gi|322227505|gb|ADW95214.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
Length = 874
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 169/387 (43%), Gaps = 56/387 (14%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+ W ++A +++G L+++L + + P F+ ++++ G+
Sbjct: 172 EAWPKEAQLQIGTTLLEILEGSVFYNG------------EPVFMRAMRTY-----GGKTI 214
Query: 385 GVIECDPLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
++ V + + H+ + P Y P +VPP W+ GG F R +
Sbjct: 215 YYLQTSESVGQWISAFKEHVAQLSPAYAPCVVPPRPWKTPFNGG-FHTEKVASRIRLVKG 273
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLVDQE 496
RE ++ + Q+ V++A++ L +T+W++NK +L VI+ R+ G L+D+E
Sbjct: 274 NREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLDLGYGVPSFKPLIDKE 333
Query: 497 DVP---------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLS 541
+ P L E + + + WK + +++ S+ + +
Sbjct: 334 NKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYTAETKRGSKSAAVVRMVG 393
Query: 542 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLK 600
ARK E Y+ + +D R R Y L+ +DL + +L F EG P+ L W
Sbjct: 394 QARKYSTFESIYFVYAMDSRSRVYAQSSTLSPQSNDLGKALLRFTEGRPVDSVEALKWFC 453
Query: 601 IHLANLYAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQCLA 655
++ ANL+ G DK ++ RV+ N LD+ F D A PL + W A+ P++ LA
Sbjct: 454 VNGANLW--GWDKKIFDVRVS---NVLDEEFQDMCRDIAADPLTFTQ-WAKADAPYEFLA 507
Query: 656 TCINLSEAL---RSPSPESTISHIPVH 679
C ++ L + +H+PVH
Sbjct: 508 WCFEYAQYLDLVEEGRADEFRTHLPVH 534
>gi|448260253|ref|YP_007348349.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
gi|428231494|gb|AFY63147.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
Length = 816
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 221/515 (42%), Gaps = 77/515 (14%)
Query: 194 IAKDQATAQDK-WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGE 252
IAKD T D+ + Y+P +L D +A++ + + + L + AG V+ IG+
Sbjct: 56 IAKDVTTDLDEPGRSKAYSPLLFSLDMDAVALLAISEALKLCV--AGPVQATTLGFAIGK 113
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
+ E + +F + NA NL E LT D ++ K + L+ R+T I + + Q
Sbjct: 114 VLYGELALAAF----RDMNA---NL---YEVLTEDLQR--KMSKDLRHRMT--IFRMQAQ 159
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP--DIRPAFVHT 370
K ++ W ++VG ++ L+ S P D +T
Sbjct: 160 ------KNGIELPEWTPTQKLQVGMYVMGLM---------------STPNEDGEVLLENT 198
Query: 371 LKSFTKEALKGRRYGVIECDPLVRK---GLEKT--GRHMIIPYMPMLVPPLNWRGYNRGG 425
LKS+ K+ +Y +++ P + K G+E + GR P L+PP +W G G
Sbjct: 199 LKSYGKKT----KY-MVDLAPEIHKLMQGIEGSIIGRSGFAA--PCLIPPQDWTGEEGVG 251
Query: 426 HFF--LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
F L +R + + + E L+ W+VN IL ++ M
Sbjct: 252 GFHGDLKIRAVRFFKGSTYQWEVMNSEGHNPEVTLAMLNAHQKVAWKVNPFILDLLKGMR 311
Query: 484 ASGGCLAGLVDQEDVPLPEKPN---------TDDETEIKKWK---WKVKTAKKQNSEKHS 531
G + V+ KP D T+++++ WK K K
Sbjct: 312 YHGYGIRKKVEFSSAHEKIKPERLEWLDTVKEGDFTDVQQYNFETWKRKMRDWHTEAKRI 371
Query: 532 QRCDI--ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
R ++ + +S A+++ + FYY + +D RGR YP+ LN GSD+ + +L +G
Sbjct: 372 GRVELRCNMAISAAQEVSTLDRFYYVYQVDNRGRMYPVSGLLNPQGSDVQKSLLHAADGE 431
Query: 590 PLGK-AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL--EGRRWWLG 646
P+ L W K+ +A+ + G+DKL+ E V + +++ +I +A PL + WW G
Sbjct: 432 PIDTPEALWWFKMGIASKF--GIDKLAPEDCVKWVDDNHANIIRAAGDPLDRDAFNWWTG 489
Query: 647 AEDPFQCLATCINLSEALR-SPSPESTISHIPVHM 680
A+ P Q +A C E R + P +S I V M
Sbjct: 490 ADKPLQFIALC---DEYRRYNEDPAGFVSRIAVAM 521
>gi|148727210|ref|YP_001285702.1| p32 [Xanthomonas phage Xop411]
gi|116583510|gb|ABK00180.1| p32 [Xanthomonas phage Xop411]
Length = 746
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 32/287 (11%)
Query: 390 DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMT 449
D + K +E+ Y+P + P+ W Y+ GG + + + + + +
Sbjct: 190 DDITTKTIERAAY-----YLPCVEQPMPWTSYSNGGWHTAEMRRLMPYLIKGKGDYHRAL 244
Query: 450 PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDE 509
+ L ++ L T WRVN R+L +D+ +AG + +++ P+ D
Sbjct: 245 QAADLSQELACINALQRTAWRVNSRMLDALDQ-------IAGKISIDEIV--AVPDADAP 295
Query: 510 TEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
+K+ K + KQ S SVA K Y+ + DFRGR Y M
Sbjct: 296 RWLKEEHRKTRNRYKQVS-------------SVANKFLAYPAIYFVYFCDFRGRKYAMGS 342
Query: 570 YLNHLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
+N GSDL + +LEF +G PL + + W I AN Y G DK S RV + ++ +
Sbjct: 343 GINPQGSDLQKCLLEFAKGMPLKDQHAVDWFMITGANRY--GFDKCSLADRVQWCHDNHN 400
Query: 629 DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL-RSPSPESTIS 674
+I A+ PL G +W GA P Q LA C+ + + + P+ S +S
Sbjct: 401 EIIACAEDPLTG-LFWKGASKPLQFLAWCLEYRDFIEQGPAFVSRVS 446
>gi|437706625|ref|ZP_20825381.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435291618|gb|ELO68431.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 337
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 36/301 (11%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
Y P +VPP W+ GG F R + RE ++ + Q+ V++A++ L +T
Sbjct: 19 YAPCVVPPRPWKTPFNGG-FHTEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNT 77
Query: 468 KWRVNKRILGVID---RMWASGGC--LAGLVDQEDVP---------------LPEKPNTD 507
+W++NK +L VI+ R+ G L+D+E+ P L E + +
Sbjct: 78 QWQINKDVLAVIEEVVRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSPE 137
Query: 508 DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 567
+ WK + +++ S+ + + ARK E Y+ + +D R R Y
Sbjct: 138 QWQQFINWKGECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYAQ 197
Query: 568 HPYLNHLGSDLCRGVLEFEEGHPLGKAG-LHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
L+ +DL + +L F EG P+ L W I+ ANL+ G DK +++ RV+ N
Sbjct: 198 SSTLSPQSNDLGKALLRFTEGRPVDSVEVLKWFCINGANLW--GWDKKTFDVRVS---NV 252
Query: 627 LDDIF-----DSADRPLEGRRWWLGAEDPFQCLATCINLSEAL---RSPSPESTISHIPV 678
LD+ F D A PL + W A+ P++ LA C ++ L + +H+PV
Sbjct: 253 LDEEFQDMCRDIAADPLTFTQ-WAKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLPV 311
Query: 679 H 679
H
Sbjct: 312 H 312
>gi|289976616|gb|ADD21661.1| DNA-dependent RNA polymerase [Caulobacter phage Cd1]
Length = 817
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 131/574 (22%), Positives = 231/574 (40%), Gaps = 94/574 (16%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QI++E + ++ + +++ E A + PY +++ + PL A+ +D +
Sbjct: 5 QIELERQMYDFGRSRAERMMSKNEEAGRASSNPYAAAIYRRFVLPLA-AMIQDDLDNRKP 63
Query: 205 WKHMTYAPYFNNLPADMMAVITMHKLVGLLM---TNAGEVR-------VVQAACQIGEAI 254
+ +A + A+ ++ +T+ +G L+ TN R Q A +G++I
Sbjct: 64 GRRKAHAVLLEGMDAEALSYLTVRSALGALLGGGTNMSGGRFGDYHPTARQLALDLGKSI 123
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
+E + F ++ T L ND ++ + + E+ + V + +
Sbjct: 124 YHEKCLALFAEADPALFYT----------LVNDLDRRLSKSERHRMTVFKMQAE------ 167
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
K V WG +VG L+ LL + LG V T +S
Sbjct: 168 ----KNGVPVPDWGTAGKTQVGAYLLDLL----------EALG---------MVETQQSL 204
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGR---HMIIP---YMPMLVPPLNWRGYNRGGHFF 428
A K + IE + LE R H+ Y+P + P++W GG
Sbjct: 205 IPSARKEKIRASIEVK-MTTDTLELVSRIKDHVSATTPYYLPCVEKPMDWVSIRDGGFHT 263
Query: 429 -----LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
L + +++ G R + + + V A++ ST W+VN +L I R
Sbjct: 264 KEMRRLQPFAIKSAGLRSEEDF----EEGDVSTVLGAINACQSTAWQVNGVMLDTI-RQV 318
Query: 484 ASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCD----IELK 539
A + ++ Q + P P KP+ + K+ T +Q H +R E+K
Sbjct: 319 AKHFDMEEILSQAEFPAPPKPDW-----LSDQKFDHMTPPQQEEFIHWKREKAQWFTEMK 373
Query: 540 L------------SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
L SVA K +D + Y+ + DFRGR Y ++ GSD+ + ++ F +
Sbjct: 374 LRGTKYGRFFTATSVADKFRDFDEIYFVYFADFRGRLYAQTTGISPQGSDMQKALIRFAK 433
Query: 588 GHPLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
G L W IH AN + G DK S + RV +T+ + + I A+ P+ +W
Sbjct: 434 GKALDTVEAERWFCIHGANKF--GFDKASLDDRVQWTKTNHNIIMACAEDPISN-EFWQE 490
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
A+ P Q LA C +E +P + S +P+ M
Sbjct: 491 ADTPLQFLAWCFEYAEW--RYNPHTFESRLPIGM 522
>gi|423262052|ref|YP_007010652.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
gi|399220984|gb|AFP33672.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
Length = 859
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 36/301 (11%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
Y P ++PP W+ GG F R + +RE ++ Q+ V++A++ L T
Sbjct: 227 YAPCVIPPRPWKSPFNGG-FHSEKVASRVRLVKGKREHVRRLTPKQMPNVYKAINALQET 285
Query: 468 KWRVNKRILGVID---RMWASGG--CLAGLVDQEDVP---------------LPEKPNTD 507
+W+VN +L V D R+ G + L+D+++ P L E N D
Sbjct: 286 QWQVNTDVLAVADDVVRLNLGYGMPSFSPLIDRDNKPNNPVPVEFQHLRGRELKEMLNDD 345
Query: 508 DETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 567
+ WK + +++ S+ + + ARK + ++ + +D R R Y
Sbjct: 346 QWSTFIAWKGECARLYTAETKRGSKSAAVVRMIGQARKYSKFDAIHFVYAMDSRSRVYAQ 405
Query: 568 HPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
L+ +DL + +L+F EG + L W + ANL+ G DK ++ RV+ N
Sbjct: 406 SSTLSPQSNDLGKALLKFAEGRSIATVEDLRWFCVCGANLW--GWDKKIFDTRVS---NV 460
Query: 627 LDDIF-----DSADRPLEGRRWWLGAEDPFQCLATCINLSEAL---RSPSPESTISHIPV 678
LDD F D A PL + W GA++P+Q LA I + L ++H+PV
Sbjct: 461 LDDDFKEMCRDIAADPLTFTQ-WAGADEPYQFLAWAIEYASYLDHVEDGRSSEFLTHLPV 519
Query: 679 H 679
H
Sbjct: 520 H 520
>gi|224157115|ref|XP_002337803.1| predicted protein [Populus trichocarpa]
gi|222869831|gb|EEF06962.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 74/133 (55%), Gaps = 33/133 (24%)
Query: 259 RIQSFFKSTKKK----NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
RI + + T+KK N + N +EG+S + +KEQE L+K
Sbjct: 5 RIHNILEKTRKKKEKANDSKNGVEGESPAV-------MKEQENLRK-------------- 43
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
K DSKPW DA KVG RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++
Sbjct: 44 ----KAKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV 99
Query: 375 TKEALKGRRYGVI 387
+ E +YGVI
Sbjct: 100 SYE----NKYGVI 108
>gi|84662626|ref|YP_453591.1| putative DNA-directed RNA polymerase [Xanthomonas phage OP1]
gi|84570675|dbj|BAE72738.1| putative DNA-directed RNA polymerase [Xanthomonas oryzae phage OP1]
Length = 774
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 114/257 (44%), Gaps = 36/257 (14%)
Query: 408 YMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
Y+P + P+ W Y GG L YV++ G E K + L ++
Sbjct: 231 YLPCVEQPMPWTSYANGGWHTAEMRRLMPYVIKGKG-----EYHKALQAADLSQELACIN 285
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
+L T WRVN R+L +++ +AG + +++ P+ D K+ K K
Sbjct: 286 SLQGTAWRVNTRMLAAMEK-------IAGKISIDEIV--AVPDADAPRWEKEEYRKTKNR 336
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
KQ S +VA+K + Y+ + DFRGR Y M +N GSDL + +
Sbjct: 337 YKQVS-------------NVAKKFEAYPAIYFVYFCDFRGRKYAMGSGINPQGSDLQKCL 383
Query: 583 LEFEEGHPLGKA-GLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
LEF G PL A + W I AN Y G DK S + RV + ++ +I +A PL G
Sbjct: 384 LEFSTGLPLTDANAVDWFLITGANRY--GYDKCSLQDRVQWCHDNHGEILAAAQDPLTG- 440
Query: 642 RWWLGAEDPFQCLATCI 658
W GA P Q LA C
Sbjct: 441 LLWKGASKPLQFLAWCF 457
>gi|32128444|ref|NP_858979.1| DNA-dependent RNA polymerase; phage monosubunit type [Xanthomonas
phage Xp10]
gi|31788507|gb|AAP58699.1| 32L [Xanthomonas phage Xp10]
Length = 746
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 128/292 (43%), Gaps = 42/292 (14%)
Query: 390 DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRE 444
D + K +E+ Y+P + P+ W Y GG L YV++ G E
Sbjct: 190 DDITAKTIERAAY-----YLPCVEQPMPWTSYASGGWHTAEMRRLMPYVIKGKG-----E 239
Query: 445 TIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP 504
K + L +++L T WRVN R+L +D+ +AG + +++ P
Sbjct: 240 YHKALQAADLSQELACINSLQRTAWRVNARMLDALDQ-------IAGKISIDEIV--AVP 290
Query: 505 NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRA 564
+ D +K+ K K KQ +VA K Y+ + DFRGR
Sbjct: 291 DADAPRWLKEEHRKTKNRYKQVR-------------TVANKFLAYPAIYFVYFCDFRGRK 337
Query: 565 YPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFT 623
Y M +N GSDL + +LEF +G PL + + W I +N Y G DK S RV +
Sbjct: 338 YAMGSGINPQGSDLQKCLLEFAKGMPLKDQQAVDWFMITGSNRY--GFDKCSLADRVQWC 395
Query: 624 ENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL-RSPSPESTIS 674
++ ++I A+ PL G +W GA P Q LA C + + + P+ S +S
Sbjct: 396 HDNHNEIIACAEDPLTG-LFWKGASKPLQFLAWCFEYAAFIEQGPAFVSRVS 446
>gi|291335377|gb|ADD94991.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
Length = 662
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PML+ P +W ++R G + L + VMR H ++ + + LE L+ + +
Sbjct: 240 PMLIEPNDWE-HDRCGGYIL-NEVMRGHDMVRRGDPTSIQGDKPLE----FLNKIQKVAY 293
Query: 470 RVNKRILGV---IDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
R+N I+GV +DR+ + G ++ E LP KP +E + + ++ A+ N
Sbjct: 294 RLNPFIVGVAEELDRLERAVGKFLPIIHHE---LPPKPVDIEENDESRKSYRRNCAEVHN 350
Query: 527 --SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+++ + C + + + KD + FY P + D+RGRAYP+ +L +D + +L
Sbjct: 351 LQAQEFRKSCRTRMTMEAVARFKDRDKFYIPWSFDYRGRAYPIPAFLTPQDTDFGKSLLM 410
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F + + WL +A Y G+DK R+ + +N+ I A P+ W
Sbjct: 411 FAKASFMTPKAEDWLAFQVATTY--GLDKAPMRERLDWVKNNTHLISCVASDPILHIHEW 468
Query: 645 LGAEDPFQCLATC 657
A++P+Q LA C
Sbjct: 469 EAADEPWQFLAAC 481
>gi|398313069|emb|CCI88420.1| mitochondrial single-subunit RNA polymerase [Yersinia phage
phiR8-01]
Length = 810
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 185/476 (38%), Gaps = 82/476 (17%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
++P +L D +A+IT+ ++ L + + V A QIG+ I E + +F+ K
Sbjct: 72 AHSPLLKDLDPDSVALITISSVINTLSQDNRGLSAV--AMQIGKTIYGELAL-CYFRDMK 128
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
E E + +D K K + L+ R+T + + + K V W
Sbjct: 129 ---------EDLYEAMVHDLTK--KMSKDLRHRLTVMRMQAE--------KAGVSIPEWT 169
Query: 329 QDALVKVGCRLIQLL-METAYIQPPVDQLGDSPP---DIRPAFVHTLKSFTKEALKGRRY 384
++VG L+ L+ E ++ D +RPA + + S
Sbjct: 170 PSQKLQVGLYLLSLIDGEDGLVEQYTDFTNKKTTYKLQLRPAVMQLMNS----------- 218
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT----HGAR 440
E L G P L+ P +W G GG F +R G
Sbjct: 219 --AESSILAHAGFAA----------PCLIQPQDWDGDGVGG--FYGDLKIRAPRFFKGDS 264
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL 500
Q E +K L V L+ S W+VN IL ++ M G ++ P
Sbjct: 265 YQMEVMKKLG-CDLRVVLGMLNAHQSVAWKVNPFILDLVKGMRLRGYETDDVMFTSAHPE 323
Query: 501 PEKP-----------NTDDETEIKKWK-----WKVKTAKKQNSEKHSQRCDIELKLSVAR 544
P +P E E K+WK W K +E R + A+
Sbjct: 324 PPRPLFLDLADKIGMTVPQEVEFKQWKQTKRDWHTKIRLVSRAEAKLSRV-----IYAAQ 378
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG-KAGLHWLKIHL 603
M + F++ D RGR YP+ LN GSD+ + +L G P+ K W K++L
Sbjct: 379 DMLEYSEFFFVFQTDDRGRMYPVSGPLNPQGSDMQKAMLHAAHGEPIADKVAEKWFKLNL 438
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLATC 657
A Y GVDKL+ + V +T ++ D+I +A+ PL + WW A+ P Q +A C
Sbjct: 439 ATKY--GVDKLNIDQCVQWTIDNHDNIMRAAEDPLNRDAFYWWSEADKPLQFIALC 492
>gi|156402875|ref|XP_001639815.1| predicted protein [Nematostella vectensis]
gi|156226946|gb|EDO47752.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 121/270 (44%), Gaps = 23/270 (8%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
+K +D PW L GC LI L+++ I + + P F H+ E
Sbjct: 169 LKQEIDDLPWATKLLC--GCTLIDFLIQSVKID--ANLFNAKSESLLPGFYHSY-----E 219
Query: 378 ALKGRRYGVIECDPLV---RKGLEKTGRHMIIPY--MPMLVPPLNWRGYNRGGHFFLPSY 432
+ R+ GVI+ +V KG + +P +PMLVPP WR GG P
Sbjct: 220 FRERRKIGVIKPHSVVCKLFKGYLADHGDIAMPTTSLPMLVPPRPWRDIRDGGFLIQPVQ 279
Query: 433 VMRTHGARQQRETIKMTPRS---QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL 489
+MR+ + + +L V +L+ LG+ W+ N RIL + +++ G
Sbjct: 280 LMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQGDD 339
Query: 490 AGLVDQEDVPLP----EKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARK 545
+ VPL EK + E +K+ + + + A+K E +S R KLSVA
Sbjct: 340 TLAIPGPVVPLELEPLEKSVKEPEARMKQIQ-EHRRARKLAREHYSLRMTALYKLSVANH 398
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+D F+ P N+DFRGR YP+ P+ H+G
Sbjct: 399 FRDR-VFWLPLNMDFRGRVYPIPPHCCHVG 427
>gi|291335906|gb|ADD95501.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
Length = 781
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 8/250 (3%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PML+PP +W GG +L + VMR + ++ + + Q E L+ + +
Sbjct: 240 PMLIPPNDWDTERPGG--YLLNEVMRGYDMVRRGNPLCI----QGETPINFLNHIQKVAF 293
Query: 470 RVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWK--VKTAKKQNS 527
+N ++ V + + V Q +VPLP KP D+ + + ++ A N+
Sbjct: 294 TLNPFVVDVAQTLMERRVEVGKFVPQVEVPLPPKPADIDDNKDSEMSYRRAAAEAYNYNA 353
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
+ + C + ++ +D + FY P +LD+RGRAYP+ +L +D + +L+F E
Sbjct: 354 QAFQRSCRTRMTMNAVEVFQDVDKFYIPWSLDYRGRAYPIPAFLTPQDTDFGKSLLKFYE 413
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G + WL +A Y G+DK + R+ +T ++ D I A P W A
Sbjct: 414 GSFMTPEAEDWLAFQVATTYGRGLDKAPIQERLQWTLDNHDLIESIALDPDGYLHEWEVA 473
Query: 648 EDPFQCLATC 657
++P+ LA C
Sbjct: 474 DEPWTFLAAC 483
>gi|207345730|gb|EDZ72453.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 671
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 53/363 (14%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 341 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 400
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 401 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 446
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 447 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 497
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 498 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 545
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQAL 461
+PMLV P W + GG+ + S ++RT + +Q +K + ++ V+ L
Sbjct: 546 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGL 605
Query: 462 DTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQEDVPLPEKPNTDDETEIKKWKWK 518
+ LG T W VN+++ V+ ++W G G L G D+ +P P P D T ++ WK +
Sbjct: 606 NVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP-PAPPKNSDPTILRAWKLQ 664
Query: 519 VKT 521
VKT
Sbjct: 665 VKT 667
>gi|429864712|gb|AGA17876.1| RNA polymerase [Synechococcus phage P60]
Length = 780
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 162/365 (44%), Gaps = 37/365 (10%)
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
K + K WG+ KVG ++ + ET +I ++ P + F++E
Sbjct: 164 KAGIQWKGWGRTVHFKVGSWALRSITETTGWIIKETIKM--------PRSQKCILRFSRE 215
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
+ R D L+++ LE + PM+ PP +W RGG +L + T
Sbjct: 216 FIGLR-------DALMQRALE-----LSFCLWPMVCPPNDWTDEGRGG--YLTEEIRGT- 260
Query: 438 GARQQRETIKMTPRSQLEPV-FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE 496
A R+ K S+ + + L+ L +R+N IL V + + + + + +
Sbjct: 261 -APMIRKVGKPIGDSKQGTIPVEFLNNLQRQSYRINAAILAVANWCYDNSRTVGKFIHDQ 319
Query: 497 DVPLPEKPNTDDETE---IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFY 553
+ N D + E K+WK ++ N++ + + VA + D+E F+
Sbjct: 320 PRERLDSFNGDPKAEPERFKEWKRMQRSIDDFNAQLFQRNWRATETMFVANQY-DDEVFW 378
Query: 554 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK 613
P + D+RGR YP + LN G+D + +L F E G+ +WL H+ Y G DK
Sbjct: 379 IPWSFDYRGRVYPQNTQLNPQGTDFDKSLLLFAEE---GEVDEYWLAWHVCTTY--GNDK 433
Query: 614 LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
LS+ RVA+T+ + + I A+ P+ W GA +P+ LA CI + + + ++
Sbjct: 434 LSHNDRVAWTQENHELITIIAEDPIGAISLWEGAGEPWMFLAACIEYHACVITGAKQT-- 491
Query: 674 SHIPV 678
S +P+
Sbjct: 492 SGLPI 496
>gi|238604555|ref|XP_002396229.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
gi|215468398|gb|EEB97159.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
Length = 184
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWR 419
+++PAF H ++ + +G++ GVI +P V + K R + P ++PML+ P W
Sbjct: 2 EVQPAFYH---AYVHQ--RGQKLGVIRLNPTVSDRMSKDAVRETLHPRHLPMLIKPKPWL 56
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPR-SQLEPVFQALDTLGSTKWRVNKRILGV 478
YN GG+ + MR + +Q+ ++ +E V+ LD LGST W++NK+I V
Sbjct: 57 NYNEGGYMYNRVSAMRYKDSVEQQSYLRRASELGNVELVYAGLDVLGSTPWKINKKIFDV 116
Query: 479 IDRMWASGGCLAGLVDQ-EDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIE 537
+ +W SG L L D P PE+P + + K+K + + HS RC +
Sbjct: 117 VLEVWNSGERLGKLPPAGYDEPEPEQPKDGNPKNRVIYITKMKNWLQNKASNHSDRCSVN 176
Query: 538 LKLSVAR 544
++ +AR
Sbjct: 177 YRVEIAR 183
>gi|291335757|gb|ADD95360.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S05-C243]
Length = 769
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 30/260 (11%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PML+PP NW GG++ + + R H ++ + Q E + ++ + +
Sbjct: 241 PMLIPPRNWHSLQDGGYYL--NDLTRCHDFIRRSNHAPI----QGEIPYLFINKIQQVSY 294
Query: 470 RVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWK-WKVKTAKKQNSE 528
++N I+ V + G + + +P KP +E W+ W+ + A +
Sbjct: 295 KLNPFIVEVAKELEERGISVGKFRPVIEYEMPPKP--PEEASKDTWREWRRQAAIVHTAR 352
Query: 529 KHSQR--CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
K+ R C + + V R+ +D+ +Y P + D+RGR YP+ L +D + ++ F
Sbjct: 353 KNETRKACRTRMTMDVVREFEDK-VYYIPWSFDYRGRVYPIPNLLTPQDTDFGKSLIIFN 411
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW--- 643
EG + K G+ W+K L+ Y G+ K + E R+A+ I D +R L R W
Sbjct: 412 EGTKITKKGMEWIKFQLSTSY--GLSKATMEERIAW-------IDDYENRALVERVWRDP 462
Query: 644 ------WLGAEDPFQCLATC 657
W A+DP+ LA C
Sbjct: 463 VGNVADWEHADDPWLFLAAC 482
>gi|18640475|ref|NP_570316.1| RNA polymerase [Synechococcus phage P60]
Length = 574
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 17/272 (6%)
Query: 390 DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMT 449
D L+++ LE + PM+ PP +W RGG+ + +R ++ +
Sbjct: 20 DALMQRALE-----LSFCLWPMVCPPNDWTDEGRGGYL---TEEIRGTAPMIRKVGKPIG 71
Query: 450 PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDE 509
Q + L+ L +R+N IL V + + + + + + + N D +
Sbjct: 72 DSKQGTIPVEFLNNLQRQSYRINAAILAVANWCYDNSRTVGKFIHDQPRERLDSFNGDPK 131
Query: 510 TE---IKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 566
E K+WK ++ N++ + + VA + D+E F+ P + D+RGR YP
Sbjct: 132 AEPERFKEWKRMQRSIDDFNAQLFQRNWRATETMFVANQY-DDEVFWIPWSFDYRGRVYP 190
Query: 567 MHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
+ LN G+D + +L F E G+ +WL H+ Y G DKLS+ RVA+T+ +
Sbjct: 191 QNTQLNPQGTDFDKSLLLFAEE---GEVDEYWLAWHVCTTY--GNDKLSHNDRVAWTQEN 245
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
+ I A+ P+ W GA +P+ LA CI
Sbjct: 246 HELITIIAEDPIGAISLWEGAGEPWMFLAACI 277
>gi|260878769|ref|ZP_05891124.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
gi|308091103|gb|EFO40798.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
Length = 724
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 128/304 (42%), Gaps = 37/304 (12%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD---TLG 465
+PM+VPP+ W+ G +L SY + + RE +K + LD
Sbjct: 33 LPMVVPPVEWKMGMTDGGAYLTSYSPLSLFKTRNRELLKQLREVKSPEFVHFLDGHNVAS 92
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQED----VPLPE------------KP-NTDD 508
T ++ L ++ + A L + D +PL E KP N +
Sbjct: 93 RTGHCIDVETLNLLKMIVKQPRKFAKLPNFNDEEAEMPLMEADLRTAQMILESKPKNISN 152
Query: 509 ETEIKK--------------WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
+K+ W+ K + A+++ EK R ++ + +A +K + Y+
Sbjct: 153 HEYLKRLDGEHKVIVKALIDWRKKTQKARQKAVEKAGARSNLLRTIEIAESLKHYKSIYF 212
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
P D RGR Y P LN G+D + ++ F+E +GK G W++I++ANL G DK
Sbjct: 213 PTQSDDRGRVYYATPLLNPQGADHEKALILFDEAKEVGKTGWDWMRINVANLM--GYDKA 270
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
+++ R+A+ E H + I P+ R W + PFQ L L +A P S
Sbjct: 271 NFKKRIAYVEAHREMIESCVANPMSDFR-WEDTDKPFQFLQAARELVKAWSMEDPTKFKS 329
Query: 675 HIPV 678
+ +
Sbjct: 330 RVGI 333
>gi|313211715|emb|CBY40657.1| unnamed protein product [Oikopleura dioica]
Length = 1238
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 118/291 (40%), Gaps = 20/291 (6%)
Query: 409 MPMLVPPLNWRGYN---RGGHFFLPSYVMRTHGAR-------QQRETIKMTPRSQLEPVF 458
MPML PP ++ ++ +G P +++ R ++ + P+ ++ +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLA---GLVDQEDVPLPEKPNTDDETEIKKW 515
A + + W +NK I+ V++ + GG + D D+ K T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+ + E+ + L + + + F+ P +LD+RGR YP +N L
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 576 SDLCRGVLEFEEGHPLGK------AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDD 629
SD R F + LG G WL I +L + K ++ + + +
Sbjct: 781 SDPYRASFLFGKAKKLGGRQKNGFTGFDWLLIQCISL-SDKKKKATHGEMLHYAWQNFHA 839
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
I DS PL G RWW E PFQ LA C+ + +A + P + I VHM
Sbjct: 840 ICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVHM 890
>gi|294083965|ref|YP_003550722.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663537|gb|ADE38638.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 871
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 24/271 (8%)
Query: 408 YMPMLVPPLNWRGYNRGGHFF-----LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
+ PM+VPP+NW N G ++ + + +++ Q+++ +K ++ A++
Sbjct: 247 FRPMVVPPINWGTANHVGPYYDTETAIRAPLVKNVNPNQRKKIVKALKTGSMKECLDAVN 306
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKT- 521
TL + +N+ L I W L +++ +P P DE + +VK
Sbjct: 307 TLQQVPYTINRYTLAAI--KWVVESKLDVEIEE---FVPVTPPIIDENDKDGTPSQVKRY 361
Query: 522 --AKKQNSEKHSQRCDIELKLSVARKM--KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
A+++ S ++ + L+ A + KD+ F+ PHN DFRGR Y + P H D
Sbjct: 362 YRAQRKKSIANANLVQFQTDLNEAESLCDKDDRRFWLPHNFDFRGRVYHI-PAFGHHRQD 420
Query: 578 LCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV--------DKLSYEGRVAFTENHLDD 629
RG+ F + P+ K L L +A + V DK++ + R + E++ +
Sbjct: 421 HIRGLFMFADKKPITKDNLKHLYFQIATTWGNQVSETDERKTDKITLDERYKWVEDNYEA 480
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINL 660
I + + G W A+ P Q LA C L
Sbjct: 481 ILLAGKDYVAGFEHWSKADAPIQHLAACREL 511
>gi|227976930|gb|ACP44057.1| putative RNA polymerase [Vibrio phage 5486]
gi|227976932|gb|ACP44058.1| putative RNA polymerase [Vibrio phage 4e]
Length = 209
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L + R+ DE+ Y+P +D+R R Y +LN GSD+ + +L PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC-LATCI 658
K H+A + G DK +E R +TE +D I + PL D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 659 NLSEALRSPSPESTISHIPVHM 680
L EAL SP PE S+I V +
Sbjct: 117 QLIEALDSPDPEKYKSNIAVAL 138
>gi|422937609|ref|YP_007007815.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
gi|374713597|gb|AEZ65066.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
Length = 816
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/465 (22%), Positives = 190/465 (40%), Gaps = 53/465 (11%)
Query: 209 TYAPYFNNLPADMMAVITMHKLV-GLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKST 267
Y+P + L D ++++ + LV + G + + A +IG + E + SF
Sbjct: 72 AYSPLLHALDPDAVSLLAITTLVESVCSRKEGYIHLGFLASEIGRRVYGELALASF---- 127
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
D N E E LT D + K + L+ ++T + + K ++ W
Sbjct: 128 -----RDINPEL-YEALTKDLQS--KMSQDLRHKLTVFRMQAQ--------KAGIELPEW 171
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
+VG L+ L+ + + + +L + A+V L E + I
Sbjct: 172 TPSQKAQVGSYLVSLMEKQSGDPKYLCELDTVATGHKSAYVVYLSKHVHELM-----AEI 226
Query: 388 ECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF--LPSYVMRTHGARQQRET 445
E +++ G P L+PP W G F+ L +R ++
Sbjct: 227 EDRMMLKAGFAA----------PCLIPPQPWDADGTQGGFYGDLKVRAVRFFKGSSEQWE 276
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP- 504
I + V L+ + + W+VN IL +I +M A G + +P PE+P
Sbjct: 277 IMRSEGHDPAIVLGMLNAVQNVAWKVNPFILDLIKQMRAKGLETKTVRTTAALPKPERPL 336
Query: 505 ---------NTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
+ E E K+WK K++ + + + + ++ A +M + FY+
Sbjct: 337 FLDLQDGALTPEQEEEKKRWKRKMRDWHTEVRKVSRIEARLAVAIAAAEEMLKHDRFYFT 396
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYAGGVDKL 614
H + R R YP+ L+ G+D + +L +G P+ L+W K+++A + G+DKL
Sbjct: 397 HQVCDRFRMYPVSGPLSPQGADNQKALLHSADGGPIDSDEALYWFKLNIAAKF--GIDKL 454
Query: 615 SYEGRVAFTENHLDDIFDSADRPL--EGRRWWLGAEDPFQCLATC 657
S E V + +++ +I +A P + WW A+ P Q +A C
Sbjct: 455 SPEDCVKWVDDNETNIIRAASDPAGRDAFHWWSQADKPLQFIAVC 499
>gi|227976920|gb|ACP44052.1| putative RNA polymerase [Vibrio phage 6e]
gi|227976924|gb|ACP44054.1| putative RNA polymerase [Vibrio phage 5312]
gi|227976926|gb|ACP44055.1| putative RNA polymerase [Vibrio phage 512]
gi|227976928|gb|ACP44056.1| putative RNA polymerase [Vibrio phage 5e]
Length = 209
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L + R+ DE+ Y+P +D+R R Y +LN GSD+ + +L PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC-LATCI 658
K H+A + G DK +E R +TE +D I + PL D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 659 NLSEALRSPSPESTISHIPVHM 680
L EAL SP PE S+I V +
Sbjct: 117 QLIEALDSPDPEKYESNIAVAL 138
>gi|125999968|ref|YP_001039639.1| DNA-dependent RNA polymerase-like protein [Erwinia amylovora phage
Era103]
gi|431810449|ref|YP_007237531.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
gi|121621824|gb|ABM63398.1| DNA-dependent RNA polymerase-like protein [Enterobacteria phage
Era103]
gi|311875209|emb|CBX44468.1| DNA-directed RNA polymerase [Erwinia phage phiEa1H]
gi|311875330|emb|CBX45071.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
Length = 885
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 201/498 (40%), Gaps = 63/498 (12%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
Y + ++ + ITM + +L A V A I IE++AR + +K A
Sbjct: 78 YLQCVGNEVASYITMKVALDML---ASGVSYTAIAMTIATRIEDQARFTKLEGAAEKYVA 134
Query: 273 T--DNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQD 330
DN S+ + ++ + KL + Q+ R I W QD
Sbjct: 135 KVLDNLKRNSSKQYQHGHNVMVAAERKLSEGRPG----QEPSVTRWIA--------WPQD 182
Query: 331 ALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD 390
L+ +G L+Q++ ++ + + P F K+ K + V+
Sbjct: 183 DLLAIGMTLLQIMEKSVFFEG------------EPVFFRYNKN-DNGGGKVKLIPVLGVA 229
Query: 391 PLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
V +E H+ + Y P +VPP +W+ GG F + R + + + ++
Sbjct: 230 DNVNAWIEAFKEHVSVMSPAYGPCVVPPRDWKTPFNGG-FHTEAVASRVRFVKGRTDHVR 288
Query: 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCL-----AGLVDQED---VP 499
+ Q+ V++A++ L S KW +N L + A L A ++ +++ P
Sbjct: 289 KLTQKQMPKVYKAINFLQSVKWSINTDTLETAQEILAKNLGLGMPSFAPIITRDNKPACP 348
Query: 500 LPEKPNTDDETEIKK------------WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
LP + E+++ WK +++ S+ + L+ A +
Sbjct: 349 LPLEFQHLRGEELRQSLTPTQWDSFLAWKGDCSKLYTMETKRTSKASAVARMLNQASDLA 408
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA-GLHWLKIHLANL 606
E Y+ + +D RGR Y ++ DL + +L +G L + LHW + NL
Sbjct: 409 KFESIYFVYAMDSRGRVYVQSSGVSPQSDDLGKSLLRSTKGKTLDSSEALHWFLVLGGNL 468
Query: 607 YAGGVDKLSYEGRVA--FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLS--- 661
+ G DK ++ RV+ E+ D + D A PL R WL A++P+Q LA +
Sbjct: 469 W--GWDKKPFDVRVSHVLDEDFADMVRDVATDPLTFRN-WLSADEPWQFLAWAKEYARYL 525
Query: 662 EALRSPSPESTISHIPVH 679
+A+ + ++++PVH
Sbjct: 526 DAVDDGTSAEFVTYLPVH 543
>gi|338827175|ref|YP_004539106.1| hypothetical protein LIMEzero_ORF33 [Pantoea phage LIMEzero]
gi|332800724|emb|CBY88564.1| hypothetical protein [Pantoea phage LIMEzero]
Length = 810
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 26/288 (9%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPS----YVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
Y PMLVPP+ R G + P Y + + R++ +K+ P +EP
Sbjct: 232 YPPMLVPPVQIAEDGRSGMWQSPGQRDQYRVISRMNRREYRALKIDPTPVIEPCM----A 287
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPL---------------PEKPNTDD 508
L S +R+N +L ++ R L + + +P PE
Sbjct: 288 LSSVPYRINPLVLELLQRSRTDVMGLPVMPVEPKLPFQIPAGVTFAQYISKFPEPMQQQM 347
Query: 509 ETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 568
+ E ++K + + + SQ + ++ A++ + + Y P D RGR Y
Sbjct: 348 DAEAHEFKVRTRIYHTNMRKFMSQMMALNAAVAEAQRYAEFDKVYLPTYADTRGRIY-YS 406
Query: 569 PYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLD 628
LN G D R +LE E LG GL+WLK+H+AN + G D ++ R +T+ L
Sbjct: 407 STLNPQGIDGVRALLELAEPVALGDDGLYWLKVHIANSF--GYDATDFDDRAKWTDKALP 464
Query: 629 DIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ ++ P +W A+ P A + L A+ S +P + + +
Sbjct: 465 RLREACRIPEAYDSFWSEADSPITAWAAAVELLRAIDSGNPATYMCRV 512
>gi|451988638|gb|AGF91115.1| RNA polymerase [Synechococcus phage S-CBP2]
Length = 793
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 10/250 (4%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW 469
PML P++W GG+ R R + P+ L Q L+ L +
Sbjct: 253 PMLCQPVDWSNDQIGGYLTAEGRFDRL--VRTYSKVGSSLPQGDLP--LQMLNNLQHQAY 308
Query: 470 RVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIKKWKWKVKTAKKQNSE 528
R+N+++ V + +A+ + E P +P E IK +K + + N++
Sbjct: 309 RLNRQVFEVAEHCFANFITVGQFRRDEHQDPPSRPAEGASEETIKAYKVARRELEDVNAQ 368
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
++ + VARK DE+ + P + D+RGR YP+ L G+D + + F +
Sbjct: 369 LEAKNWRTTETMFVARKFIDEDRIWIPWSCDYRGRIYPITHCLTPQGTDFDKAMFYFADE 428
Query: 589 HPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAE 648
P+ + +WL +A Y G+DK + + RV + + + I A P++ W E
Sbjct: 429 GPINE---YWLAFQVATTY--GLDKATMDERVEWVRANTELISTIAQNPIDTISLWRDVE 483
Query: 649 DPFQCLATCI 658
+P+ LA C
Sbjct: 484 EPWCFLAACF 493
>gi|262155779|ref|ZP_06028902.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|379741344|ref|YP_005333313.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|421332625|ref|ZP_15783103.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|424601712|ref|ZP_18040858.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
gi|262030370|gb|EEY49011.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|378794854|gb|AFC58325.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|395929232|gb|EJH39982.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|395976865|gb|EJH86304.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
Length = 758
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+W+ + A++++ E+ R ++ + +A +K Y+P D RGR Y P LN
Sbjct: 208 QWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYATPLLNP 267
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
G+D + ++ F+ +GK G WL+I+++NL G DK +++ R+A+ E H D I
Sbjct: 268 QGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKQRIAYVEAHRDMIESC 325
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
P+ R W + PFQ L L +A + P S + +
Sbjct: 326 VANPMSDYR-WEHTDKPFQFLQAARELVQAWKMEDPTKFKSRVGI 369
>gi|422936620|ref|YP_007006595.1| RNA polymerase [Escherichia phage phiKT]
gi|374713664|gb|AEZ65095.1| RNA polymerase [Escherichia phage phiKT]
Length = 823
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 46/297 (15%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR---ETIKMTPRSQLE---------- 455
+P + PL+W G GG+ H AR Q IK +P +Q++
Sbjct: 229 LPFVEKPLDWTGIVGGGY----------HTARMQSTMPRCIKASP-TQMDVLIKHRDDYK 277
Query: 456 -PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGL--VDQEDVPLPEKPNTDDETEI 512
V ++TL S +WR+NKRIL V +M G ++ D + +D TE
Sbjct: 278 GTVVACINTLQSVEWRINKRILEVQQQM------FRGFEPKNKPDALECHSKDVEDWTEA 331
Query: 513 KKW---KWKVKTAK---KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYP 566
K WK + A+ +Q +E+++ LSVAR+ D ++ + D+RGR YP
Sbjct: 332 DKSLHSHWKKEMARWYTEQRAERYAASRH-AYTLSVAREFADYPRIWFMYFADWRGRYYP 390
Query: 567 MHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
++ G+D+ + +LEF G P+ L + G DK S RV + +
Sbjct: 391 ATTGISPQGTDISKSMLEFANGKPISDPIAEQFFFLLGST-KFGFDKGSISERVQWVHEN 449
Query: 627 LDDIFDSADRPLEGRRWWLGAEDP---FQCLATCINLSEALRSPSPESTISHIPVHM 680
+ I AD PL +W D +Q LA C +E R P+ +S +PV +
Sbjct: 450 HELIMACADEPLLHTDFWYREADKKTRYQFLAWCFEYAEYKRFPA--GFVSRLPVSL 504
>gi|372217716|ref|YP_005087397.1| RNA polymerase [Cyanophage 9515-10a]
gi|310005637|gb|ADP00025.1| RNA polymerase [Cyanophage 9515-10a]
Length = 776
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 28/262 (10%)
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG-ARQQRETIKMTPRSQLEPVFQALDTL 464
IP+ PML P +W GG+++ + +M+ H R+ + T+ + E + L+ L
Sbjct: 236 IPW-PMLTEPNDWSNEKLGGYYY--NALMKGHELTRRGKSTL-----THGELPLKFLNKL 287
Query: 465 GSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP------NTDDETEI---KKW 515
++RVN +L V + C + + D +P P D ET KKW
Sbjct: 288 QKVRYRVNNHVLNV------AHYCKDKEI-KVDKFIPIVPAYKPPPPPDIETNKEAHKKW 340
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
K + + A + + +L A K K E+ FY + D+RGRAYP+ +L
Sbjct: 341 KKETRNAHNADCLNFKRSVRTRAQLETAEKFK-EDVFYLCWSFDYRGRAYPIQAFLTPQD 399
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
+D + ++ F + P+ + WL I +A Y G+DK + + R+A++ ++ + I A
Sbjct: 400 TDFGKALIRFADESPVTQDAEDWLAIQVATTY--GLDKATMDERIAWSLDNHELITLIAT 457
Query: 636 RPLEGRRWWLGAEDPFQCLATC 657
P W A++P+Q ++ C
Sbjct: 458 DPTGCIPEWESADEPWQFMSAC 479
>gi|451989257|gb|AGF91727.1| RNA polymerase [Synechococcus phage S-CBP4]
Length = 792
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 16/253 (6%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGA--RQQRETIKMTPRSQLEPVFQALDTLGST 467
PML+ P NW GG +L + VMR H R I Q E L+ +
Sbjct: 239 PMLIEPNNWTNDRAGG--YLLNEVMRGHHMVRRGNHGCI------QGETPIDFLNKIQKV 290
Query: 468 KWRVNKRILGVIDRMWASG---GCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKK 524
+ +N I+ V + + G G +V+ + P P ++E+ K++K +K K
Sbjct: 291 AFTLNPFIVEVAEDLARLGRPVGKFLPVVNHAEPPKPFDIAENEESR-KQYKRAMKQVKD 349
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
++ + C + + + KD F+ P + D+RGRAYP+ +L +D + +L
Sbjct: 350 LQYQESKKSCRTRMTMEAVNRFKDVPKFFIPWSFDYRGRAYPIPAFLTPQDTDFGKSLLI 409
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F +G + WL +A + G+DK R+ + N+ + A P+ W
Sbjct: 410 FADGSYMTPEAEDWLAFQVATTF--GLDKAPMTERLEWARNNHELFTLIATDPVRNLPLW 467
Query: 645 LGAEDPFQCLATC 657
G E+P+Q LA
Sbjct: 468 EGVEEPWQFLAAA 480
>gi|320156443|ref|YP_004188822.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319931755|gb|ADV86619.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 758
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
+W+ + A++++ E+ R ++ + +A +K Y+P D RGR Y P LN
Sbjct: 208 QWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYATPLLNP 267
Query: 574 LGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDS 633
G+D + ++ F+ +GK G WL+I+++NL G DK +++ R+A+ E H + I
Sbjct: 268 QGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKKRIAYVEAHREMIESC 325
Query: 634 ADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
P+ R W + PFQ L L +A + P S + +
Sbjct: 326 VANPMSDYR-WEHTDKPFQFLQAARELVQAWKMEDPTKFKSRVGI 369
>gi|158345171|ref|YP_001522878.1| putative RNA polymerase [Enterobacteria phage LKA1]
gi|114796467|emb|CAK25005.1| putative RNA polymerase [Pseudomonas phage LKA1]
Length = 811
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/570 (20%), Positives = 220/570 (38%), Gaps = 100/570 (17%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI-------A 195
+R+ + EA Q +E Q+ L ++P + L +E +R A+ A
Sbjct: 10 QREKRHSAEATAQHLREVQEAL----RAGRVDDIPAARRLIARVYEDVRAALEPVVETKA 65
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEA 253
+ A W +P D +AV+++ ++ +M + E + + +G A
Sbjct: 66 RGPGAALRGW--------LRRVPIDTLAVLSIRVVLAHVMRDTAESPATLQRIGHALGRA 117
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
IE EA +Q +++ ++ L E L ++ + ++
Sbjct: 118 IEQEALVQEAYRA-------------NALYLDRTWEYLRTAGTTSQRHIQKTMRAVVHNV 164
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR--PAFVHTL 371
+ G GH+ + + + +G +Q ++ ++ G I PA V +
Sbjct: 165 LEGQFDGHLTNAEY-----IHLGKHGLQACLDAGLVELQRHGQGAKTNAIYVLPAEVREV 219
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF---F 428
+F + G M P W G GG++
Sbjct: 220 LAFVPPEISG-------------------------AAQMMFAEPTPWDGAAGGGYYTERM 254
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKW------RVNKRILGVIDRM 482
+ +R R R T K R + V + D L + ++ L +I ++
Sbjct: 255 KIDFPLR----RVNRRTRKPLRRVIRDNVGKCTDVLACANYLQAQAFSIHTPTLELIKQV 310
Query: 483 WASGGCLAGLVDQEDVPLPEK-------PNTDDETEIKKW-KWKVKTAK----KQNSEKH 530
W SGG G+ +E P P ++ E E++++ WK + K+ K
Sbjct: 311 WNSGGGALGIPKREAPPEPAFPFPETWDKDSATEAELERFASWKRRMHAWHMGKKELRKA 370
Query: 531 SQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHP 590
Q L++S + ++P +D RGR Y LN G ++C+ +L F + P
Sbjct: 371 QQGIGQALRVSAGAAAR----VWFPTFIDSRGRYY-YRGVLNPQGDEMCKALLHFADKRP 425
Query: 591 LGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDP 650
LG+ GL+W+++H+AN + G DK ++ R A+ ++F + + P + + A+ P
Sbjct: 426 LGERGLYWIQVHVANCF--GEDKARFDARAAWAVERKAELFAALEAPADS--CFAEADTP 481
Query: 651 FQCLATCINLSEALRSPSPESTISHIPVHM 680
A EA RS +P + + +P+HM
Sbjct: 482 LGAFAAVWEWREAERSGNPAAYCTGLPIHM 511
>gi|464683|sp|P33540.1|RPOP_NEUCS RecName: Full=Probable DNA-directed RNA polymerase
Length = 896
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 28/281 (9%)
Query: 409 MPMLVPPLNWRGYNR------GGHFFLPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQA 460
+PM++PPL W+ + GG + +R + + + MT +L A
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYNKEL---VDA 340
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVK 520
++ + +N +IL I R D++D + K D + ++ K
Sbjct: 341 VNFKSKIPYTINLKILDFITRDEFINR------DKKDNVIIYKHIHPDSALLGEYMKDRK 394
Query: 521 TAKKQNSEKHSQRCDIELKL-SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
K H+ + + S+A+ MKD + FY +D+RGR Y LN G +L
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +L F+EG L GL LKI+ AN A G+DK S E R+ + E +L I D ++
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
W A++P LA + L P + ISH+P+ M
Sbjct: 508 NYEIWREADEPLLFLACALELKGYNEDP---NFISHLPILM 545
>gi|11466088|ref|NP_049543.1| RNA polymerase [Neurospora intermedia]
gi|4877818|gb|AAD31445.1| RNA polymerase [Neurospora intermedia]
Length = 896
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
+S+A+ MKD + FY +D+RGR Y LN G +L R +L F+EG L GL L
Sbjct: 415 ISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELARSLLLFKEGQKLNDIGLKAL 474
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
KI+ AN A G+DK S E R+ + E +L I D ++ W A++P LA +
Sbjct: 475 KIYTAN--AFGLDKRSKEERLDWVEQNLHKIID-----IDNYEIWREADEPLLFLACALE 527
Query: 660 LSEALRSPSPESTISHIPVHM 680
L P + ISH+P+ M
Sbjct: 528 LKGYKEDP---NFISHLPILM 545
>gi|395132388|dbj|BAM29336.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1109
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 27/247 (10%)
Query: 457 VFQALDTLGSTKWRVN----KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD--ET 510
+ ++ LGS + +N K +L +I + +E + L NT +
Sbjct: 514 IIDCINYLGSIPYTINTQVLKHVLNLIKSIEGEEQLYNNNKIKELIKLNMHHNTKNLYNL 573
Query: 511 EIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR--KMKDEEGFYYPHNLDFRGRAYPMH 568
++K + K NS+ +S + I L + + Y+ + +D+RGR Y
Sbjct: 574 TLRKKYGDISLIHKHNSQYYSDKSIITSALLFSSWCDSSKDNSIYFNYFIDWRGRLYTDT 633
Query: 569 PYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHL- 627
YL+ G +L R +L F+ G + + GL LKI+ AN + G+DKLSY R+ +TEN+L
Sbjct: 634 SYLSFQGGNLARSLLLFKRGQLITEKGLEHLKIYTANCF--GLDKLSYNQRLEWTENNLE 691
Query: 628 ---------DDIFDSA---DRPL--EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI 673
DD F S +P+ E + + A++P L+ C+ L P+ +
Sbjct: 692 KIISLPNLSDDDFKSMIHNHKPIYSEFYNFMMEADEPLLFLSCCVELKNYYSDPN--RFL 749
Query: 674 SHIPVHM 680
S++PV++
Sbjct: 750 SNLPVYL 756
>gi|1449393|emb|CAA39045.1| putative RNA polymerase (mitochondrion) [Neurospora crassa]
Length = 896
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 123/281 (43%), Gaps = 28/281 (9%)
Query: 409 MPMLVPPLNWRGYNR------GGHFFLPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQA 460
+PM++PPL W+ + GG + +R + + + MT +L A
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYNKEL---VDA 340
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVK 520
++ + +N ++L I R D++D + K D + ++ K
Sbjct: 341 VNFKSKIPYTINLKLLDFITRDEFINR------DKKDNVIIYKHIHPDSALLGEYMKDRK 394
Query: 521 TAKKQNSEKHSQRCDIELKL-SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
K H+ + + S+A+ MKD + FY +D+RGR Y LN G +L
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +L F+EG L GL LKI+ AN A G+DK S E R+ + E +L I D ++
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
W A++P LA + L P + ISH+P+ M
Sbjct: 508 NYEIWREADEPLLFLACALELKGYNEDP---NFISHLPILM 545
>gi|345870379|ref|ZP_08822332.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
gi|343921951|gb|EGV32660.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
Length = 1072
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 111/256 (43%), Gaps = 43/256 (16%)
Query: 451 RSQLEPVFQ----ALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT 506
R P FQ A++ + WR+N+ +L W L LV+ P
Sbjct: 314 RKHRSPNFQRYVAAINVQQAVHWRINRPLL-----QWTQQ--LIALVNA-------PPAN 359
Query: 507 DDETEIKKW------KWKVKTAKKQNSEKHSQRCDIEL------KLSVARKMKDEEGFYY 554
DD+ ++ W + + ++ E+ ++ D L +L + + D FY
Sbjct: 360 DDDASLRDWIKDHLYRPRPANGTRKTFERPAEFLDNPLASRALDELCPSDPLVDPPTFYL 419
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYA------ 608
P D+RGR YP +L G DL RG+LEF G L ++G+H L+ H ANL
Sbjct: 420 PWKADYRGRIYPQTSWLTPQGGDLQRGLLEFARGQVLNESGVHALRRHGANLVERSRLLT 479
Query: 609 --GGVDK--LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
G D+ ++ R +T +H I SA PL W A+ P Q LA C+ +
Sbjct: 480 DLGISDRQVVTLNERERWTRDHEAAILASAADPLAEPFWRDVADKPMQFLAFCLAYRQWK 539
Query: 665 RSPSPESTISHIPVHM 680
+ P++ I H+PV +
Sbjct: 540 Q--HPDARI-HLPVQI 552
>gi|374531627|ref|YP_005098186.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
gi|372001329|gb|AEX65868.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
Length = 803
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 27/288 (9%)
Query: 409 MPMLVPPLNWRGYNRGG-HFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQALDTLGS 466
+P + PP W GG H + Q T++ + PR V +AL+ + S
Sbjct: 225 LPCVEPPKPWVTPTDGGWHTMAMRRTLPCMVRGQATATVEDVGPR-----VLKALNKVQS 279
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP--------------NTDDETEI 512
W VN+RIL V + LV + +P+KP N + +
Sbjct: 280 VAWEVNERILEVAEFAREHFDVQDVLVSDKRGGMPDKPLFMQADPVLKIVDMNEFELAQF 339
Query: 513 KKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLN 572
+W+ + + Q + + + VA K K + ++ +++D+R R Y L+
Sbjct: 340 TEWRQEAREWHTQQKVRGAHAGSTNEAIRVANKYKGKP-LWFVYSVDYRSRFYASGQGLS 398
Query: 573 HLGSDLCRGVLEFEEGHPL-GKAGLHWLKIHLANLYA-GGVDKLSYEGRVAFTENHLDDI 630
G+DL + ++ F P+ AGL W ++ AN +A +DK + R + ++ D I
Sbjct: 399 PQGNDLSKALIHFARSAPIRTSAGLFWFRVAGANKWAVNKLDKQPLDVRAQWVIDNADFI 458
Query: 631 FDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
AD P+ R W A+ PFQ LA C + +R +PES + IP+
Sbjct: 459 CRIADDPISHRE-WTDADVPFQFLAWCFEYAAWVR--NPESFRTRIPL 503
>gi|78212329|ref|YP_381108.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
gi|78196788|gb|ABB34553.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
Length = 507
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/464 (21%), Positives = 178/464 (38%), Gaps = 74/464 (15%)
Query: 220 DMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEG 279
D ++ + + KL+ + T + V A IG+AI+ E R Q F NL+
Sbjct: 43 DHVSFVALRKLIDCIHTKQNQRTHVCTA--IGKAIQEELRNQFFTL----------NLDE 90
Query: 280 DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRL 339
D + + + K + K + L +++L + +G K + + W + G L
Sbjct: 91 DGKKIRDKRLKKPRSTPKYRNLGVKLSMERRLLE-KGWAKDDL-YQDWPSLLCTQFGSLL 148
Query: 340 IQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEK 399
+ ++ Y + P TK K R + P + + L K
Sbjct: 149 LDAAVKERYFEVP----------------------TKWVAKNRSEKFVVPSPALEEHLTK 186
Query: 400 TGRH---MIIPYMPMLVPPLNWR------GYNRGGHFFLPSYVM--------RTHGARQQ 442
++ ++ PPL+W+ +N G + LP+ R + R
Sbjct: 187 RTEQIDELVTTQEVLIEPPLDWQLQDGEARFNFSGGYHLPTTRKPNNPLCRGRHYSTRFG 246
Query: 443 RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP--- 499
+ I + L+TLG T ++V+ ++ VID W +AG + P
Sbjct: 247 SDAINL------------LNTLGRTAFQVDPQVFEVIDDCWDKQHSIAGFNSPFENPQLN 294
Query: 500 --LPEKPNTDDETEIKKWKWKVKTAKKQNSE-KHSQRC-DIELKLSVARKMKDEEGFYYP 555
+PE + + W+ + A E KH ++ ++ L ARK F+
Sbjct: 295 QEMPEHLKALENKHPDRVAWRKRQAYLHELEQKHIEKTLSVQAVLFSARKNLTRPRFWLS 354
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
+ DFRGR Y +L+ D R VL F +G L + G W + + G K S
Sbjct: 355 WSCDFRGRIYSQQSWLDPQSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGGT--KQS 412
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
+ R +T ++ + I A P+ W AE+P+Q L ++
Sbjct: 413 FASRSQWTYDNAELIAAIASDPIRHSSQWENAEEPWQFLQLAMD 456
>gi|291235121|ref|XP_002737494.1| PREDICTED: CG4644-like, partial [Saccoglossus kowalevskii]
Length = 767
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+K S + R+ + + +DDI DSAD P G +WW A++P+Q L+ C+ +++A+RSP P
Sbjct: 569 EKNSLQERLEYADTIMDDILDSADNPTTGNKWWQTADEPWQTLSCCMEVAKAVRSPDPTK 628
Query: 672 TISHIPVH 679
ISH+PVH
Sbjct: 629 FISHLPVH 636
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 433 VMRTH-GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG 491
VMR+ GA Q ++ T L PV+ +L+ LG+ W++N+R+L +I +++ G
Sbjct: 493 VMRSRDGALQHEVMLEKTHPGNLYPVYDSLNQLGAVPWQINQRMLDLIIQVFRDKGSEEL 552
Query: 492 LVDQEDVPLPEKPNTDDETEIKK 514
V Q PE P ++ +++
Sbjct: 553 DVPQPVSECPEPPKLSEKNSLQE 575
>gi|116072263|ref|ZP_01469530.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
gi|116064785|gb|EAU70544.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
Length = 809
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/453 (21%), Positives = 178/453 (39%), Gaps = 58/453 (12%)
Query: 222 MAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDS 281
+A + + KL+ + T + V A IG AI+ E R Q F NL+ +
Sbjct: 89 VAFVALRKLIDCIHTKQNQRTHVCTA--IGRAIQEELRNQFFTL----------NLDENG 136
Query: 282 EPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQ 341
+ + N K + K + L +++L + K W +D L + ++
Sbjct: 137 KKIRNKRLKKPRSTPKYRNLGVKLAMERRLLE-----------KGWAKDDLYQDWPSVLH 185
Query: 342 LLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG 401
+ + + P + + + T+ K R + P + + L K
Sbjct: 186 TQVGSLLLDPAIKE-------------KYFDAQTRWVAKNRSEKFVVPTPALEEHLSKRK 232
Query: 402 RHM--IIPYMPMLV-PPLNWR------GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS 452
+ ++ +L+ PPL+W+ +N G + LP Y + + + + S
Sbjct: 233 EQIDDLVTTKDVLIEPPLDWQLQDGEARFNFSGGYHLP-YTRKPNNPLCRGRHYETRFGS 291
Query: 453 QLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP-----LPEKPNTD 507
L+TLG T ++V+ + VID W + +AG + P +P+
Sbjct: 292 D---AINLLNTLGRTAFQVDPLVFEVIDDCWETQRSIAGFNSPFENPELNQEMPDHLKAL 348
Query: 508 DETEIKKWKWKVKTAKKQNSEK-HSQRC-DIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
D+ + W+ + A + E+ H ++ + L ARK + + F+ + DFRGR Y
Sbjct: 349 DKKHPDRVAWRKRQAYLHDQEQEHIEKTQSAQAVLISARKNETRQRFWLSWSCDFRGRIY 408
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
+L+ D R VL F +G L + G W + + G K SY R +T
Sbjct: 409 SQQSWLDPQSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGGT--KQSYAARSQWTYE 466
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCI 658
+ + I A P+ W A++P+Q L +
Sbjct: 467 NTELIAAIASDPIRHSSQWENADEPWQFLQMAM 499
>gi|281306683|ref|YP_003345489.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
gi|271277988|emb|CBH51594.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
Length = 814
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 121/288 (42%), Gaps = 19/288 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFF----LPSYVMRTHG---ARQQRETIKMTPRSQLEPVFQAL 461
+ M+ PPL W GG L ++R G + RE K + F+ +
Sbjct: 235 LSMISPPLRWDRIVGGGFHTEKRQLKFPLIRVGGRIRHKHIREYRKAMSAETMPNFFEPI 294
Query: 462 DTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTD-------DETEIKK 514
+ L S + +++ + + +W GG + + + P P+ + E +++
Sbjct: 295 NYLQSIPYSMSEDMYDTVKNIWQEGGGVLKVPKKAPPVKPVFPHAEGWNKEGASEADMEV 354
Query: 515 W-KWKVKTAKKQNSEKHSQRCDIEL-KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLN 572
+ +WK +T N + + E+ + M + + D RGR Y +
Sbjct: 355 FNRWKRQTFNWHNDLREHKSMAWEMHSFNKVVGMARGKPVWNAMFADTRGRLY-YRGACS 413
Query: 573 HLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFD 632
GSD + V+ F PLG G++WLK+H+AN + G DK ++ R A+T+ H + +
Sbjct: 414 PQGSDATKAVVHFARKKPLGHRGVYWLKVHIANCF--GFDKKKFKERAAWTDQHWEHLLH 471
Query: 633 SADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
P + + P +A L+ A S +PE+ S I VHM
Sbjct: 472 GVTDPSNSDVYRANNDAPLMAVAAVRELAAAYASGNPETFESGIIVHM 519
>gi|395132392|dbj|BAM29339.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1248
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 62/321 (19%)
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV----RKGLEKTGRHMII--PY 408
+LGD I F H + F K K + DP + ++ LE +++II
Sbjct: 596 KLGDFFMSILQQFPHAI--FNK---KVKLNSYFTKDPFLLELNKEYLEDIKKNLIIDPKT 650
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
+PML PL+W + GG FL + + + I E +F ++ S K
Sbjct: 651 LPMLCKPLDWTENSYGG--FLSNEIRGNDIITGSNDHIVQNR----ESLFNTVNNFNSIK 704
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSE 528
+ VN ++L L+ E + E +DE
Sbjct: 705 FGVNTKLLKY-------------LLSSEGSYILESIKPEDEL------------------ 733
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
QR L L + ++ FY D+RGR Y YL++ DL +L F EG
Sbjct: 734 ---QRA---LTLKIG-ELYSNTFFYLNTQTDWRGRIYVQSFYLSYQAGDLSTALLNFWEG 786
Query: 589 HPLGKAGLHWLKIHLANLY-AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
P+ G +L I+ AN + + K SY R+ + +N+ + I + DR L L A
Sbjct: 787 QPINDEGRFYLYIYGANSHNENNISKASYTDRLKWVKNNYNKIIN-LDRNL-----ILSA 840
Query: 648 EDPFQCLATCINLSEALRSPS 668
E+PF A C+NL E +P+
Sbjct: 841 ENPFIFTAFCLNLREIHYNPN 861
>gi|152125995|gb|ABS29326.1| RNA polymerase [Fusarium proliferatum]
gi|152125997|gb|ABS29327.1| RNA polymerase [Fusarium proliferatum]
gi|152125999|gb|ABS29328.1| RNA polymerase [Fusarium proliferatum]
gi|152126001|gb|ABS29329.1| RNA polymerase [Fusarium proliferatum]
gi|152126003|gb|ABS29330.1| RNA polymerase [Fusarium proliferatum]
gi|152126005|gb|ABS29331.1| RNA polymerase [Fusarium proliferatum]
Length = 371
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 33/260 (12%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR--SQLEP---VFQALDT 463
+PM+V P + GG Y++ + T K+ + S+++P ++ ++
Sbjct: 107 LPMIVKPKEYTITKLGG------YLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINN 160
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
+ T +++NK +L D + + ++D ++ E E K K + K +
Sbjct: 161 MMKTPFKINKELL---DYLVLNNDKHKLIID-----------SNKEHEYSKIKNRTKIEE 206
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
++ + S++ + L +A KD Y+P LD RGR YP YLN+ GS+L + +L
Sbjct: 207 RKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSELAKSLL 266
Query: 584 EFEEGHPLGK---AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
F + + + + +L + Y G++K SYE R+ + + + D I D + L
Sbjct: 267 LFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILDFENSDLLE 326
Query: 641 RRWWLGAEDPFQCLATCINL 660
+ A++ F LA C +
Sbjct: 327 K-----ADEKFLFLAFCFEI 341
>gi|195159574|ref|XP_002020653.1| GL15084 [Drosophila persimilis]
gi|194117603|gb|EDW39646.1| GL15084 [Drosophila persimilis]
Length = 1427
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 157/380 (41%), Gaps = 52/380 (13%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWE-----QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW 186
G AK L R Q+K+E + + KE+ + AD C ++L K L W
Sbjct: 496 GYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFAN--ADKCRERL-------KELEQSW 546
Query: 187 FEPLRDAIAKDQAT--AQDKWK---HMTYAPYFNNLPADMMAVITMHKLVGL-LMTNAGE 240
+ + AI +D T AQ ++K +M Y Y +L A I + +L L +
Sbjct: 547 RKQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKLGEGSETFS 606
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK 300
V Q ++GE ++ +I+ KK N T + G+ D Q+ ++
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGTLEKV-GEIYSSYCDLWDSGNTQDNARQ 660
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV-----DQ 355
L+ +Q+ + PW + L VG L +LM I P +
Sbjct: 661 AWQRLVHEQR----ESGPSMDLPEVPWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKSKS 716
Query: 356 LGDSPPDIRPAFVHTLKS---FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY---- 408
S ++ PAF ++ KE +K P++ + L + R + +
Sbjct: 717 KTTSSQNLLPAFYTLFRNQGRLVKEEVKPH--------PVLSR-LLRGSRQQTLTFDSNL 767
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PP W + GG+ S ++R H A QQ E I+ + L P +L+ L S
Sbjct: 768 VPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPALDSLNQLASV 827
Query: 468 KWRVNKRILGVIDRMWASGG 487
WRVN ++L VI ++ +GG
Sbjct: 828 PWRVNTQLLDVIIEVFQNGG 847
>gi|169646973|ref|YP_001718359.1| RNA polymerase [Fusarium proliferatum]
gi|149131940|gb|ABR20838.1| RNA polymerase [Fusarium proliferatum]
Length = 1062
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 33/260 (12%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR--SQLEP---VFQALDT 463
+PM+V P + GG Y++ + T K+ + S+++P ++ ++
Sbjct: 447 LPMIVKPKEYTITKLGG------YLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINN 500
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
+ T +++NK +L D + + ++D ++ E E K K + K +
Sbjct: 501 MMKTPFKINKELL---DYLVLNNDKHKLIID-----------SNKEHEYSKIKNRTKIEE 546
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
++ + S++ + L +A KD Y+P LD RGR YP YLN+ GS+L + +L
Sbjct: 547 RKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSELAKSLL 606
Query: 584 EFEEGHPLGK---AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
F + + + + +L + Y G++K SYE R+ + + + D I D + L
Sbjct: 607 LFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILDFENSDLLE 666
Query: 641 RRWWLGAEDPFQCLATCINL 660
+ A++ F LA C +
Sbjct: 667 K-----ADEKFLFLAFCFEI 681
>gi|464682|sp|P33539.1|RPOP_AGABT RecName: Full=Probable DNA-directed RNA polymerase
gi|1325997|emb|CAA44799.1| RNA Polymerase [Agaricus bitorquis]
Length = 1102
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 40/283 (14%)
Query: 406 IPYMPMLVPPLNWRGYNRGGHFF--LPSYVMRTHGARQQRETIKMTPRSQLEP---VFQA 460
I +PML P R + G +F + S H + K R E ++ +
Sbjct: 474 IVQLPMLTEP---RKISSDGLYFPYINSDTTNLHLFEGELIKGKYNLRDHTEASEMLYSS 530
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD---ETEIKKWKW 517
++ L S K+++NK +L I W D +D L + N ET+ K+
Sbjct: 531 INYLNSIKFKINKAMLNFILAEW----------DNKDSKLFKGYNMLKPILETDSKE--- 577
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+K K ++ K++ +I +S+A KD E FY P +DFRGR YP+ Y+++ G D
Sbjct: 578 -IKEEKVSSNSKYTLYSNI---ISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISYQGGD 632
Query: 578 LCRGVLEFEEGH-PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
L R ++ F + L +G L ++LANL G DKL + R+ + + + +S +
Sbjct: 633 LARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLESNE- 689
Query: 637 PLEGRRWWLGAED----PFQCLATCINLSEALRSPSPESTISH 675
+ ++ D PFQ ++ I ++ L +P++ IS+
Sbjct: 690 -ISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN 729
>gi|327492533|ref|YP_004347431.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912867|gb|ADO51613.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1356
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 151/372 (40%), Gaps = 68/372 (18%)
Query: 331 ALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD 390
LV + L++ L+E I+ ++ FV C
Sbjct: 645 VLVNISLNLLEFLVEAKLIETKTEKSNTDSSKKESIFV--------------------CK 684
Query: 391 PLVRKGLEKTGRH---MIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMR---------TH 437
++ ++K G + + I Y +PM+V P ++ G L Y++ +
Sbjct: 685 ---KEIVDKIGNYFNLLDISYKIPMIVEPKKYKINQNTGQLNLGGYLLNDIDFISPLIIN 741
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQED 497
+ ++I R Q ++ + + S +++N ++L I +G ++D
Sbjct: 742 NPELKSQSI---IREQ-NNIYDMANNISSVAYKINNQVLEFI---LENGLEYNLIID--- 791
Query: 498 VPLPEKPNTDDETEIKK---WKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
PN E+KK K + K+ +S +R + + L +A K+ F+
Sbjct: 792 ------PNNKSNLELKKEAGHKLTLSEEKELDSFLSKKRLEKNI-LGLALIFKNIPEFFI 844
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA---GLHWLKIHLANLYAGGV 611
P +D RGR Y M YLN+ +L + +L F +G + K+ + +LKI AN + G+
Sbjct: 845 PVRIDNRGRVYCMADYLNYQSVELAKSLLLFSKGEKVSKSDQISIDYLKIFGANCFGNGL 904
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC---INLSEALRSPS 668
+K SY RV + + D I + + L AE +A C +N +L++ +
Sbjct: 905 EKKSYNNRVEWVNKNEDKIINFRNGELISE-----AESKLLFIAFCFEYLNYKNSLKN-N 958
Query: 669 PESTISHIPVHM 680
ISH PV +
Sbjct: 959 DTFYISHFPVQL 970
>gi|133454|sp|P22372.1|RPOP_CLAPU RecName: Full=Probable DNA-directed RNA polymerase; AltName:
Full=ORF2
Length = 936
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/376 (20%), Positives = 165/376 (43%), Gaps = 68/376 (18%)
Query: 323 DSKPWGQDAL-VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
D+K + DA + +G +LI++L+E+ + + + D H++ + T+E K
Sbjct: 250 DNKMFFDDAFYLHLGAKLIEILIESDLLALTLVKFKDES--------HSVLTLTEEVAKA 301
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF-----FLPSYVMRT 436
+ PL +PM+V P + GG+ +L S + +
Sbjct: 302 IPTNKVVLAPLK---------------LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKK 346
Query: 437 HG----ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI--DRMWASGGCLA 490
+R Q + I ++++++ + +T +++NK++L + D +++ L
Sbjct: 347 LNMNDISRIQEKNI----------IYESINKMMATAFQINKKLLKYLLEDYVFSKLLKLE 396
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
G +++ E N D K ++ + SQ+ + + +A ++
Sbjct: 397 GDDLYKNITQIEIDNMD------------KRDNQKYQQYLSQKLLRDYIIDIATVFQNVP 444
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA---GLHWLKIHLANLY 607
Y+P LD RGR YP+ Y ++ S+L + +L F + ++ + +LK + A +
Sbjct: 445 ELYFPLKLDHRGRLYPITAYFHYQSSELAKALLLFAIPDTIERSDSISIDYLKAYGATCF 504
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN---LSEAL 664
+DK SY+ R+ + + + ++I + + L AE+ F LA C+ L++ L
Sbjct: 505 GNKLDKKSYDKRLQWVDANWENIINYRNNVLLEL-----AENKFMFLAYCLEIERLNQFL 559
Query: 665 RSPSPESTISHIPVHM 680
S E+ +++P+ +
Sbjct: 560 NDDSIENFKTYLPLQL 575
>gi|10119856|dbj|BAB13498.1| RNA polymerase [Flammulina velutipes]
Length = 1708
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 47/232 (20%)
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEK-----PNTDDETEIK 513
A++ L K+ +NK +L + W ++ D + E P+TD K
Sbjct: 1062 NAINYLNKQKFDINKDMLEFVKEEW----------NKTDSIIFENCNHLHPDTD---SFK 1108
Query: 514 KWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 573
K K + ++ K+ +I +++A KD FY+P +DFRGR YP+ Y +
Sbjct: 1109 KLNQKERIKVTAHNSKYWNYLNI---INLAILFKDT-SFYFPTFMDFRGRIYPISTYFTY 1164
Query: 574 LGSDLCRGVLEFEE--------------GHPLG---------KAGLHWLKIHLANLYAGG 610
+DL R +L F GH + A L +LKI++AN+Y G
Sbjct: 1165 QSNDLARSLLLFSNVNHKHSDDILKNTIGHLVSLDNLFLNCHLADLDYLKIYIANVYGNG 1224
Query: 611 VDKLSYEGRVAFTENHLDDIFD--SADRPLEGRRWWLGAEDPFQCLATCINL 660
DKL + R+ + ++ +++ + D+ + + +++PFQ L++ I+L
Sbjct: 1225 KDKLLLKNRIKWLNSNWEEMINLYQKDKDAFYKSYVYISKEPFQFLSSFISL 1276
>gi|331244154|ref|XP_003334718.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313708|gb|EFP90299.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
E FY L+ G+ P+ LN +G ++C G+L F E LGK GL WLKI+L+N Y
Sbjct: 47 EKFY--KALEKLGQVVPIPENLNQIGDNICWGLLNFVEKKELGKDGLQWLKINLSNNY-- 102
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
G +K S + F E L+ + DSAD+PLEG
Sbjct: 103 GNNKASLDDWAKFIEEQLELVIDSADQPLEG 133
>gi|242086118|ref|XP_002443484.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
gi|241944177|gb|EES17322.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
Length = 118
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L+ RQ+K+E EAWE+ +EY+++ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 196 KDQATAQDKWKHMTYA----PYFNNLPADMMAVITMHKLVGLLMTN 237
D+ +WK + + Y L AD + VI MHK++GLLM+
Sbjct: 71 CDRHMQ--RWKRVKHVYGLRQYLLLLLADKVVVIVMHKMMGLLMST 114
>gi|227976922|gb|ACP44053.1| putative RNA polymerase [Vibrio phage 1032]
Length = 209
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 540 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWL 599
L + R+ DE+ Y+P +D+R R Y +LN GSD+ + +L LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKKLGKRGLFWL 60
Query: 600 KIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC-LATCI 658
K H+A + G DK +E RVA+T +D I + PL D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEQRVAWTNERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 659 NLSEALRSPSPESTISHIPVHM 680
L EAL S PE+ S+I V +
Sbjct: 117 QLIEALDSGDPENYESNIAVAL 138
>gi|224171355|ref|XP_002339484.1| predicted protein [Populus trichocarpa]
gi|222875221|gb|EEF12352.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 61 NLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSILD 117
N G +N + G R Y S AEA++S E +SG++EVQEL + ++
Sbjct: 11 NSGSTNGNRC----GGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE------ 60
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADM 167
++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DM
Sbjct: 61 -EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM 109
>gi|13959703|sp|P33541.2|RPOP_NEUIN RecName: Full=Probable DNA-directed RNA polymerase
gi|578158|emb|CAA36326.1| RNA polymerase [Neurospora intermedia]
Length = 811
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 58/267 (21%)
Query: 409 MPMLVPPLNWRGYNRGGHFFL------PSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
+PM+ PPL W RGG+ S V+ G+ R I +T + ++ ++
Sbjct: 243 LPMVCPPLPWGHGIRGGNLINLTDTQDESLVV---GSFHHRHKIAITDK-----LYNVIN 294
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
L + K+++N G L+ L ++ L NT +T I
Sbjct: 295 KLNAFKFKIN-------------GDLLSYLQNEGSFILDFYKNTKKDTYINNM------- 334
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
+ + +AR + FY N+D+RGR Y YL++ GS+L +
Sbjct: 335 ---------------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSLAL 378
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLY--AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+ EG L + GL + ++ AN+Y G K S++ R + +LD+I + D
Sbjct: 379 INLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNII-AMD----- 432
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSP 667
+ + L AE P A C+ + + +P
Sbjct: 433 KEFILKAESPTLFAAFCLTMRKLKENP 459
>gi|239907675|ref|YP_002954416.1| RNA-polymerase [Desulfovibrio magneticus RS-1]
gi|239797541|dbj|BAH76530.1| putative RNA-polymerase [Desulfovibrio magneticus RS-1]
Length = 619
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 48/279 (17%)
Query: 410 PMLVPPLNWRGYNRGGHFFLP---SYVMRTHGARQQRETIKMTPRSQLEPVF-QALDTLG 465
PM P W+ GG + + S+ ++Q+ I ++ + F +AL+ L
Sbjct: 56 PMFCSPDEWKKDLSGGGYLIKEDHSFAFNVKSSKQRICIISEYKKNSFDKTFLKALNLLQ 115
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQ 525
T + +NK+IL + S L K D+T
Sbjct: 116 QTPYNINKKILNTMKHFHGSTSYGNNLT---------KKLLQDQT--------------- 151
Query: 526 NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
LS+A + D FY P LDFRGR Y ++ D R +L F
Sbjct: 152 --------------LSLADDLADRT-FYIPWYLDFRGRMYSSVLQISPQSHDEGRSLLVF 196
Query: 586 EEGHPLGK----AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGR 641
E + K A L L + + Y K+S E +++ E++ DIF SA P+
Sbjct: 197 SEKKHIDKHNECASLENLAVFGYSKYGSPTGKVSKEKMISWIESNERDIFKSAQDPILNF 256
Query: 642 RWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
+W A D + LA C +S + E ++IPV++
Sbjct: 257 EFWQKASDRYSFLAFCFEWKNIQQSKAGER-YTNIPVYV 294
>gi|13811419|gb|AAK40111.1| DNA polymerase [Pleurotus ostreatus]
Length = 993
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 58/281 (20%)
Query: 394 RKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH---GARQQRETIKM 448
++ LE+ ++II +PM+ P W + GG FL + R G+ + K+
Sbjct: 397 KEYLEEIKENIIINPSTLPMICKPNFWSENSYGG--FLENENKRIDVITGSSDHKH--KI 452
Query: 449 TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD 508
R+ L ++ ++ + STK+ +N L I G L + ED
Sbjct: 453 ENRNLL---YKVINLVSSTKFSINNLFLNYIKN---EGNYLLNEIKAED----------- 495
Query: 509 ETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH 568
QR I LK+S + FY + D+RGR Y
Sbjct: 496 ---------------------EMQRI-ITLKVS---ETFSNTPFYLNVHADWRGRIYTKS 530
Query: 569 PYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY-AGGVDKLSYEGRVAFTENHL 627
++ + G DL +LEF +G P+ + G ++L I+ AN + + K SY R+ + +
Sbjct: 531 FFITYQGGDLTTALLEFFDGEPINEKGKYYLYIYGANNHNMNKISKASYIDRINWVNQNY 590
Query: 628 DDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPS 668
D I + D+ L L A++PF C+N+ E ++P+
Sbjct: 591 DKIIN-LDKDL-----ILSADNPFTFATFCLNMREIHKNPN 625
>gi|355755256|gb|EHH59003.1| DNA-directed RNA polymerase, mitochondrial [Macaca fascicularis]
Length = 1119
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G +L ++L++ + +D S + P H + SF ++
Sbjct: 547 QPWPLPVQMELGKQLAEMLVQATRMPSSLDNRHGSS-RLVPVLYH-VYSFRNV----QQI 600
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LE + +PML PPL W + G P+ +MRT GA
Sbjct: 601 GILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGAT 660
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC 488
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC
Sbjct: 661 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGC 708
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+GR+WW+GAE+P+Q LA C+ ++ A+R P + +SH+PVH
Sbjct: 764 QGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYVSHLPVH 804
>gi|426386380|ref|XP_004059663.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Gorilla gorilla gorilla]
Length = 818
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLGST 467
+PML PPL W + G P+ +MRT GA Q +E ++ P + L AL LG+
Sbjct: 712 VPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNC 771
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
WRVN R+L ++ +++ + GC Q VP P
Sbjct: 772 AWRVNGRVLDLVLQLFQAKGC-----PQLGVPAP 800
>gi|75301087|sp|Q8L6J2.1|RPO2A_TOBAC RecName: Full=DNA-directed RNA polymerase 2A; AltName:
Full=NictaRpoT2-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2A
gi|21425675|emb|CAC95025.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 332
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 649 DPFQCLATCINLSEALRSPSPESTISHIPVH 679
DPFQCLA CINLSEA+RS SPE+++SHIPVH
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVH 31
>gi|2500645|sp|Q01521.1|RPOP_PODAS RecName: Full=Probable DNA-directed RNA polymerase
gi|4585700|emb|CAA43116.2| RNA polymerase [Podospora anserina]
Length = 948
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 128/297 (43%), Gaps = 31/297 (10%)
Query: 393 VRKGLEKTGRHMIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR 451
+ K L + G ++P +PM+V P + GG+ Y+ + +++ T
Sbjct: 325 ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVNGGYLSNDLYI-NENIVKEKWNLRDNTQI 383
Query: 452 SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE 511
+F ++ L S +++N +L I+ ++ S L+D P P
Sbjct: 384 LHFNQIFDLVNNLSSIGYKINTDVLDFIE-LYGSDYFKNELID----PRYSHPLLKKSKL 438
Query: 512 IKKWKWKVKT--AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
KK K ++ + AKK+ E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKELQEN---------ILGLAEIFRNIPEFFIPVNADFRGRVYCTPE 489
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGK---AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
YLN+ +DL + +L F + + K L +LKI+ + + G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKDYIALSYLKIYGGS--SFGLDKLSANDRIKWVDKN 547
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI---SHIPVHM 680
L++I + + A++ F LA CI + L +++P+ M
Sbjct: 548 LNNI-----KNYRNGKLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQM 599
>gi|478704|pir||S26945 DNA-directed RNA polymerase (EC 2.7.7.6) - Podospora anserina
mitochondrion plasmid pAL2-1
Length = 948
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 126/297 (42%), Gaps = 31/297 (10%)
Query: 393 VRKGLEKTGRHMIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR 451
+ K L + G ++P MPM+V P + GG+ Y M + +++ T
Sbjct: 325 ILKVLPEDGTLFVLPKKMPMMVKPKPYTTRVNGGYLSNDLY-MNENIVKEKWNLRDNTQI 383
Query: 452 SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE 511
+F ++ L S +++N +L I+ + S L+D P P T
Sbjct: 384 LHFNQMFDLVNNLSSMGYKINTDVLDFIET-YGSDYFKNELMD----PRYSHPLTKKSKL 438
Query: 512 IKKWKWKVKT--AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
KK K ++ + AKK+ E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKETQENM---------LGLAEMFRNIPEFFMPVNADFRGRVYCTPE 489
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG---GVDKLSYEGRVAFTENH 626
YLN+ +DL + +L F + + K ++ + +Y G G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKD--YIALSYLKMYGGSSFGLDKLSANDRIKWVDKN 547
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI---SHIPVHM 680
L+++ + + A++ F LA CI + L +++P+ M
Sbjct: 548 LNNM-----KNYRNGKLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQM 599
>gi|15147309|ref|NP_150313.1| orf218 [Spizellomyces punctatus]
gi|15100078|gb|AAK84242.1|AF404303_16 orf218 [Spizellomyces punctatus]
Length = 218
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 32/152 (21%)
Query: 550 EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAG 609
E Y P D+RGR YP ++N+ G+ L R VLEF G L G+ I+ AN Y
Sbjct: 20 EPIYLPVFGDWRGRVYPHSTFINYQGNSLSRNVLEFYHGEVLNSNGIFSFFIYGANTY-- 77
Query: 610 GVDKLSYEGRVAFTENH--------------LDDIFDSADRPLEGRRWWLGAEDPFQCL- 654
G+DKL+++ R + ++ DD A L R+W++ ++P +
Sbjct: 78 GLDKLTFDERYQWVIDNSAKILSMDRDFLLGADDQLAFASFALYYRKWYINPDEPLNVIV 137
Query: 655 ---ATC------------INLSEALRSPSPES 671
ATC INL++ + + P +
Sbjct: 138 YQDATCSGLQHISSLLADINLAKQVNTAGPSA 169
>gi|413947445|gb|AFW80094.1| hypothetical protein ZEAMMB73_281983 [Zea mays]
Length = 277
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 350 QPPVDQLGDSPPDIRPAFVHTL-KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
+PP DQ DS P P F H L K + +++ VI D LV +G E T RH+ IPY
Sbjct: 181 KPPADQTPDSSP---PTFKHVLCKPIIENGRLKKKHWVI--DHLVHEGFESTARHVDIPY 235
Query: 409 MPMLVPPLNWRGYNRG 424
+PMLVPP W+G G
Sbjct: 236 LPMLVPPKKWKGVLHG 251
>gi|426386358|ref|XP_004059652.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 370
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Query: 633 SADRPL--EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+A PL +GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH
Sbjct: 48 TAPHPLSPQGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVH 96
>gi|327492538|ref|YP_004347441.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912878|gb|ADO51622.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1107
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 49/261 (18%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTK 468
PM+V P W GG S + +++ + I + +S ++Q ++ L S K
Sbjct: 524 FPMIVQPKIWTEDTYGGFLSNDSRELDIITGKEEHDHI-IENKS---LIYQTVNYLNSIK 579
Query: 469 WRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSE 528
+ VN +L I G + + KP+ D
Sbjct: 580 FGVNNMLLEYITS--EEGKYILDHI---------KPDND--------------------- 607
Query: 529 KHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG 588
QR + L VA K+ FY + D+RGR Y +L++ DL +L F EG
Sbjct: 608 --LQRT---ITLEVA-KLYSNIPFYLNTHADWRGRIYTQSFFLSYQSGDLSLSLLNFWEG 661
Query: 589 HPLGKAGLHWLKIHLANLY-AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
+ + G +L I+ AN + + K S++ R+ + + D I + DR L L A
Sbjct: 662 EKVNEEGKFYLYIYGANSHDQNKISKASFKDRIDWVNENYDKIIN-LDREL-----ILSA 715
Query: 648 EDPFQCLATCINLSEALRSPS 668
E PF A C+N+ E +P+
Sbjct: 716 ESPFIFTAFCLNMREIHNNPN 736
>gi|238566639|ref|XP_002386099.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
gi|215437037|gb|EEB87029.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
Length = 49
Score = 58.9 bits (141), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPL 638
PLG GL WLKIHLANLY G DK S+ RV + + L+ IFDSA PL
Sbjct: 2 PLGARGLRWLKIHLANLY--GYDKASFSERVEYIDARLEQIFDSATNPL 48
>gi|49147034|ref|YP_025889.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
gi|34538679|gb|AAQ74287.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
Length = 1028
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
+ L VA K+ + FY + D+RGR Y +L++ DL +L F EG + + G
Sbjct: 533 ITLEVA-KLYERGPFYLNTHADWRGRIYTQSFFLSYQSGDLSLSLLNFWEGEKVNEEGKF 591
Query: 598 WLKIHLANLY-AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAT 656
+L I+ AN + + K S++ R+ + + D I + DR L L AE PF A
Sbjct: 592 YLYIYGANSHNQNKISKASFKDRIDWVNKNYDKIIN-LDREL-----ILTAESPFIFTAF 645
Query: 657 CINLSEALRSPS 668
C+N+ E +P+
Sbjct: 646 CLNMREIHNNPN 657
>gi|452849733|ref|YP_007475378.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849745|ref|YP_007475390.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067451|gb|AGE14592.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067463|gb|AGE14604.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 266
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 26/219 (11%)
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVP 499
R + + +KM P Q E + ++ L K +++ +L + W SG L + P
Sbjct: 69 RSKHDLMKM-PEGQ-EILSDCVNYLNRQKLVIHEEVLDFLISEWESGRS-DTLFKEYIKP 125
Query: 500 LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLD 559
+P D A K N+ + + LS+A + FY P D
Sbjct: 126 MPSDNGND--------------AIKHNAIHYRYQS----ILSLASNFRKLPYFYLPVFGD 167
Query: 560 FRGRAYPMHPYLNHLGSDLCRGVLEF-EEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
FRGR Y L++ G DL RG++ F E + GL ++ ++AN + G DKLS++
Sbjct: 168 FRGRLYTFCSLLSYQGQDLSRGLIGFYNESEEINSEGLCYVYHYMANTF--GNDKLSHDN 225
Query: 619 RVAFTENHLDDIFDSADRPLEG-RRWWLG-AEDPFQCLA 655
+V+F+E+ + + D + E + WL A +P L+
Sbjct: 226 KVSFSESIIKECLDLYENDKEKWKNLWLNKAAEPVLFLS 264
>gi|13959456|sp|O03685.1|RPOP_GELSP RecName: Full=Probable DNA-directed RNA polymerase
gi|1805213|gb|AAB41448.1| ORF1 [Gelasinospora sp. G114]
Length = 831
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY--AG 609
FY N+D+RGR Y YL + GS+L ++ EG L + GL + ++ AN+Y G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
K S++ R + +LD+I + D+ + L AE P A C+ + + +P
Sbjct: 428 KFSKKSFQDRFNWVVENLDNII-AMDKD-----FILKAESPTLFAAFCLTMRKLKENP 479
>gi|10119854|dbj|BAB13497.1| RNA polymerase [Flammulina velutipes]
Length = 1168
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 549 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY- 607
E FY + +D+RGR Y LN GSDL +L F EG PL ++G+++ I+LAN +
Sbjct: 686 ENIFYLNNFIDWRGRIYNYSFGLNFQGSDLSSSLLVFAEGEPLNESGIYYFYINLANNHN 745
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSE 662
+ K S+ R + + + I + D+ L LGAE F L+ + L E
Sbjct: 746 ENKLSKKSFVERYNWVVKNYNKIVN-LDKDL-----ILGAEKIFNFLSLALVLRE 794
>gi|32455893|ref|NP_862205.1| rna polymerase [Blumeria graminis f. sp. hordei]
gi|28300411|gb|AAO37818.1| RNA polymerase [Blumeria graminis f. sp. hordei]
Length = 973
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP-VFQALDTLGST 467
+PM+V P + GG +L + V G ++ + Q V+ ++ + T
Sbjct: 360 LPMIVKPKPYSENKLGG--YLLNDVEYDEGIFTKKIGYAIPSTIQENSIVYFVVNKMMET 417
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
++VNK +L + R L D E L K N E E +++
Sbjct: 418 SFKVNKELLNYLLRYNHIHKLLID-PDFEHKLLNVKRNKAQEKEYQQFL----------- 465
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
S++ E + +A+ + ++P LD RGR YP + ++ GS+L + ++ F
Sbjct: 466 ---SKKLLEEYIIKIAQTYSNVPEIFFPIKLDNRGRLYPKTAFFHYQGSELAKALILFAR 522
Query: 588 GHPL---GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
+ K + +LK + A + G+++ SY R+ + +N+ D I D + L
Sbjct: 523 PDLIKRSDKEAIEYLKAYGATCFGNGLNRKSYTKRLDWVDNNWDQIIDFENSGLVDE--- 579
Query: 645 LGAEDPFQCLATCINL 660
AE+ F L+ CI +
Sbjct: 580 --AEEKFLFLSFCIEM 593
>gi|385304972|gb|EIF48971.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 450
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVH 679
+++I DS + P +G+++W+ A+ P+Q LAT + L +A+ P P +SH PVH
Sbjct: 1 MNEIIDSVEHPFDGKKFWVEADHPWQFLATAMELKDAMELPDPTQFVSHQPVH 53
>gi|449669690|ref|XP_002168863.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 404
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 639 EGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
+G++WW DP+Q L CI ++ ALRSP P S +++ PVHM
Sbjct: 56 KGKQWWREGTDPWQTLVACIEITNALRSPDPSSYVTYAPVHM 97
>gi|159145024|gb|ABW90146.1| RNA polymerase [Pleurotus ostreatus]
Length = 967
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL-EPVFQALDTLGST 467
+PM+ P W GG + L + R+ M S++ + ++ L +
Sbjct: 273 LPMICEPKKWSENTTGG-YLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNI 331
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP-EKPNTDDETEIKKWKWKVKTAKKQN 526
+ +N +L + W + + + PL E N + ++++KK K N
Sbjct: 332 PFEINNTMLDYLLLEWKNTNSVIFKEYNKLHPLSKELDNNNLDSKMKK------EILKHN 385
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
S H +I L+++ M+ E+ Y P LDFRGR YP+ YL++ GSDL R +L F+
Sbjct: 386 S-IHWNYSNI---LNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLARSLLLFK 440
Query: 587 E----------------------GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVA-FT 623
L + ++K++LAN++ G++KL+ R+ F
Sbjct: 441 NVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKWFN 498
Query: 624 EN 625
EN
Sbjct: 499 EN 500
>gi|158251728|ref|YP_001504342.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
gi|122893329|gb|ABM67601.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
Length = 1204
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 536 IELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAG 595
I LKL+ + K + Y N D+RGR Y YL++ G DL ++ EG+ L ++G
Sbjct: 729 ITLKLANSYS-KYQNPIYISCNADWRGRIYTQSFYLSYQGGDLSSSLINLFEGNSLNESG 787
Query: 596 LHWLKIHLANLY-AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCL 654
L++ I+ AN + + K S++ R+ + + + D I + + L A++ F
Sbjct: 788 LNYFYIYGANCHNENDLSKESFDSRINWVKTNYDKIINL------NKDLILKADNLFLFT 841
Query: 655 ATCINLSEALRSPSPESTISHIPVHM 680
+ C+N+ + ++T ++P+++
Sbjct: 842 SFCLNMK---KIHEDKNTKIYMPIYL 864
>gi|361129190|gb|EHL01103.1| putative DNA-directed RNA polymerase, mitochondrial [Glarea
lozoyensis 74030]
Length = 484
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPAFVHTLKSFTKEALKGRR 383
PW KVG ++ L++ A + P+ ++ +++PA +H+ K GR+
Sbjct: 344 PWPTAVRAKVGAYVLSALIDIATMPVPIQNSVTKETMTEMQPALLHSYKYK-----HGRK 398
Query: 384 YGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQ 442
YG+I + + + L+ + P W + GG+ P+ ++R G + Q
Sbjct: 399 YGIIMANEALTQSLK--------------LEPDPWMSFAEGGYLIHPTKLIRVKSGNKDQ 444
Query: 443 RETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRIL 476
R + + L+ + + LD LG T+WR+N+ +
Sbjct: 445 RYYAEAAIAQGDLDRLREGLDVLGKTEWRINRPVF 479
>gi|242092660|ref|XP_002436820.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
gi|241915043|gb|EER88187.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
Length = 115
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L+ RQ+K ETEAWE+ +EY+++ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 196 KDQATAQDKWKHMTYAPYFNNLPA 219
D+ +WK + + +PA
Sbjct: 71 CDRHVQ--RWKRVKHVYGLRQVPA 92
>gi|328751377|ref|YP_004347438.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912875|gb|ADO51620.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1041
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 41/237 (17%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL-EPVFQALDTLGST 467
+PM+ P W N GG + L + R + +S++ E ++ L S
Sbjct: 341 LPMITKPKIWSQDNIGG-YLLDEFNELNKNNEIVRSNHYLKNQSRVSETQETTVNYLNSI 399
Query: 468 KWRVNKRILGVIDRMWASGGCLA--GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQ 525
+ +N+ +L + W + + E D ET+I+ Q
Sbjct: 400 PFEINETMLSYLIEEWNKENSIIFKNYNKLHHLSAYENDKLDSETKIEII---------Q 450
Query: 526 NSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEF 585
++ + +I +++A MK+ Y P LDFRGR YP YLN+ GSD+ R +L F
Sbjct: 451 HNSLYWNYSNI---INIALLMKNN-TIYLPTFLDFRGRIYPTPNYLNYQGSDIARSLLLF 506
Query: 586 EE-GHPLGKAG---------------------LHWLKIHLANLYAGGVDKLSYEGRV 620
+ G+ + + ++K++L+N+Y G++KL+ R+
Sbjct: 507 KNVGNKVNYDSTVNEILESFISKELILNKLNDIDYVKLYLSNVY--GLNKLNRRNRI 561
>gi|11466092|ref|NP_052999.1| rna polymerase [Pleurotus ostreatus]
gi|5107017|gb|AAD39926.1|AF126285_2 RNA polymerase [Pleurotus ostreatus]
Length = 903
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 121/276 (43%), Gaps = 40/276 (14%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL-EPVFQALDTLGST 467
+PM+ P W GG + L + R+ M S++ + ++ L +
Sbjct: 273 LPMICEPKKWSENTTGG-YLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNI 331
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP-EKPNTDDETEIKKWKWKVKTAKKQN 526
+ +N +L + W + + + PL E N + ++++KK K N
Sbjct: 332 PFEINNTMLDYLLLEWKNTNSVIFKEYNKLHPLSKELDNNNLDSQMKK------EILKHN 385
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV---- 582
S H +I L+++ M+ E+ Y P LDFRGR YP+ YL++ GSDL +
Sbjct: 386 S-IHWNYSNI---LNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLAKIFIIIK 440
Query: 583 ---LEFEEGHPLGKA---------------GLHWLKIHLANLYAGGVDKLSYEGRVAFTE 624
L+ + + + + + ++K++LAN++ G++KL+ R+ +
Sbjct: 441 NVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKWFN 498
Query: 625 NHLDDIFD--SADRPLEGRRWWLGAEDPFQCLATCI 658
+++ ++ + D + ++ A++P Q ++ +
Sbjct: 499 DNIKEMLYLLNNDNKIFNEKFLNKAKEPAQFISCLL 534
>gi|313244254|emb|CBY15078.1| unnamed protein product [Oikopleura dioica]
Length = 808
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 13/197 (6%)
Query: 409 MPMLVPPLNWRGYN---RGGHFFLPSYVMRTHGAR-------QQRETIKMTPRSQLEPVF 458
MPML PP ++ ++ +G P +++ R ++ + P+ ++ +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 459 QALDTLGSTKWRVNKRILGVIDRMWASGGCLA---GLVDQEDVPLPEKPNTDDETEIKKW 515
A + + W +NK I+ V++ + GG + D D+ K T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+ + E+ + L + + + F+ P +LD+RGR YP +N L
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 576 SDLCRGVLEFEEGHPLG 592
SD R F + LG
Sbjct: 781 SDPYRASFLFGKAKKLG 797
>gi|2281469|gb|AAB64106.1| RNA polymerase [Ascosphaera aggregata]
Length = 441
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 594 AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQC 653
+++ KI+ AN + +DKLS++ R+ + ++++DDI + + L + AE
Sbjct: 6 TAINYFKIYGANCFGNKIDKLSFDDRIKWVDDNIDDIINFKNFNLINK-----AESKLLF 60
Query: 654 LATCINLSEALRSPSPEST---ISHIPVHM 680
+A C ++ L + ES+ ISH+P+ +
Sbjct: 61 IAFCFEFNKFLNFLNDESSSYFISHLPIQL 90
>gi|392973304|ref|YP_006489261.1| RNA polymerase [Colwellia phage 9A]
gi|388549474|gb|AFK66671.1| RNA polymerase [Colwellia phage 9A]
Length = 878
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 121/318 (38%), Gaps = 84/318 (26%)
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ-----QRETIKMTPRSQLEPVFQALDTL 464
PM+ P +W G GG+ T A++ +R + + P + V A++ L
Sbjct: 175 PMVCKPDDWEGVTGGGYL--------TDTAKKLTPLIKRNSKHVAPEGNI--VIDAINHL 224
Query: 465 GSTKWRVNKRILGVIDRMWAS------------GGCLAGL--VDQEDVPLPEKPNTD--- 507
T +R+NKRI V + + G + +ED L EK + +
Sbjct: 225 QKTPYRINKRIFSVCKVLQGTRPEDMKKVFMPKTGKFEEECPITKEDEYLWEKEDGEKEI 284
Query: 508 -------------------DETEIKK------WKWKVKTAKKQNSEKHSQRCDIELKLSV 542
DE +KK W + KK+ K S + +++
Sbjct: 285 TDKKTGKVKTKKCLVMVHQDEESVKKRKDYFRWAARFDLHKKRKEAKKSLDRSYKTCMTL 344
Query: 543 ARKMKDEEGFYYPHNLDFRGRAYP-MHPYLNHLGSDLCRGVLEFEEGHPL-----GKAG- 595
++ + Y+ ++LD R R YP +N GSD + +EF G PL G+ G
Sbjct: 345 VSELDKYDEIYWAYSLDRRSRVYPSAMTGINLQGSDYQKANVEFAVGLPLDFDGDGEGGE 404
Query: 596 ---LHWLKIHLANLYAGGV--DKLSYEGRVAFTENHLDD----------IFDSADRPLEG 640
+ + H N GV DKL+ E +N L I + A+ PLE
Sbjct: 405 YAIIKTMCNHWGNDSGNGVKTDKLTREQ----AQNWLHGLSGYKGSESWILECANDPLES 460
Query: 641 RRWWLGAEDPFQCLATCI 658
+ W+ A+ P Q LA +
Sbjct: 461 KA-WMKADKPLQFLAAIL 477
>gi|2370356|emb|CAA72339.1| RNA polymerase [Pichia kluyveri]
Length = 992
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 437 HGARQQRETIKMTPRSQLEPVFQA-LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
H + ++KM S+ V+ + ++ L S +++NK +L I + + L
Sbjct: 342 HNMYYSKPSMKML--SKFNDVYMSTMNNLQSVSYKMNKDMLDWIIKNYEK----YNLYTP 395
Query: 496 EDVPLPEKPNTDDETEI--KKWKWKVKTAKKQNSEKHSQRCDIELKLS-VARKMKDEEGF 552
D P+ E +I K+ K K K K S+R D+E ++ +A+ K+
Sbjct: 396 WDTPMAY------EHDIFGKEGKRTSKNVVKDCLAKMSKR-DLENDMTDMAKSFKNVSKM 448
Query: 553 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVD 612
Y+P +DFRGR Y +++ +D + +L+F E + + + +L + AN Y G+D
Sbjct: 449 YFPLRVDFRGRVYA-QSVISYQSTDTAKALLDFGEVYKVNMDDVEYLFMSGANAY--GLD 505
Query: 613 KLSYEGRV 620
K S+ R+
Sbjct: 506 KKSHMERI 513
>gi|224116180|ref|XP_002331981.1| predicted protein [Populus trichocarpa]
gi|222832105|gb|EEE70582.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 401 GRHMIIPYMPMLVPPLNWRG 420
RHM+IPYMPMLVPPL WRG
Sbjct: 91 ARHMVIPYMPMLVPPLRWRG 110
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 38/115 (33%)
Query: 233 LLMTNA--GEVRVVQAACQIGEAIENE-------ARIQSFFKSTKKK----NATDNNLEG 279
++MT G RVV AAC IG+AIE E RI + + T+KK + + N +EG
Sbjct: 1 MVMTGGEHGCARVVTAACMIGDAIEQEIFSVMKQIRIHNILEKTRKKKERADDSKNGVEG 60
Query: 280 DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVK 334
+S ++KEQE L+K KG DSKP DA K
Sbjct: 61 ESPA-------VMKEQENLRK------------------KGKDDSKPRNADARAK 90
>gi|313244255|emb|CBY15079.1| unnamed protein product [Oikopleura dioica]
Length = 410
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 630 IFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHM 680
I DS PL G RWW E PFQ LA C+ + +A + P + I VHM
Sbjct: 12 ICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVHM 62
>gi|300120042|emb|CBK19596.2| DNA-directed RNA polymerase [Blastocystis hominis]
Length = 276
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L +RQ+++E A + A ++YQ + A++ + +L + L WF+PL AI ++Q
Sbjct: 94 LLKRQLELEENAIDLAVQKYQAMKAEVEKIGQGVSLRPAQILLADWFDPLSTAIREEQLN 153
Query: 199 ----ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAI 254
+ + PY L + +++I +H+LV +LM + +G+ I
Sbjct: 154 IKYSSQGKGAISEKAIQPYLLLLKPEKISIIVLHELVHILMQSPAGNAYTFCCENVGKII 213
Query: 255 ENEA 258
++EA
Sbjct: 214 KSEA 217
>gi|116073358|ref|ZP_01470620.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
gi|116068663|gb|EAU74415.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
Length = 193
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK----IHLANLYA-- 608
P D R R M LN GSD + +L F + + + ++ I LAN A
Sbjct: 54 PTYFDSRLRMSYMCDTLNPQGSDYQKALLHFANSVQVTEENIREVQKDLLITLANAAAIE 113
Query: 609 ---GGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655
DK S EGR+A+ + + D A+ P R++W ++PFQ LA
Sbjct: 114 TPAVKTDKPSMEGRMAWELEMVTKLKDEAEYPAVNRKFWTECDEPFQFLA 163
>gi|402585201|gb|EJW79141.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 654
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSY-VMRTHGARQQRET-----IKMTPRSQLEPV 457
++I + LVPP W GG ++ S+ V+R H ++ R Q PV
Sbjct: 540 LLIYCLWKLVPPRPWLDSGEGGPYYGSSFNVLRPHPDYSMINVNYEMKKRLKSRKQARPV 599
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
F AL+ LG T W++N+ +L V +++ A E + +P P+
Sbjct: 600 FDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPIHPS 647
>gi|297738417|emb|CBI27618.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 43.1 bits (100), Expect = 0.44, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 657 CINLSEALRSPSPESTISHIPVH 679
CINLS+ALRS P++TISH+PVH
Sbjct: 2 CINLSDALRSSPPKTTISHMPVH 24
>gi|194694606|gb|ACF81387.1| unknown [Zea mays]
Length = 323
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 658 INLSEALRSPSPESTISHIPVH 679
+NL+EALRS SPE+TISHIPVH
Sbjct: 1 MNLTEALRSSSPETTISHIPVH 22
>gi|224116154|ref|XP_002331975.1| predicted protein [Populus trichocarpa]
gi|222832099|gb|EEE70576.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 27/129 (20%)
Query: 1 MWRNLARQSSTR------NFKFSPSKVSQTTNFLKK------ITSLETQTLLDSSCPLLG 48
MWRN+A+Q++ + NF P +T +FL L+ +L ++S P L
Sbjct: 31 MWRNVAKQATLKTQSKSLNFPSFP----RTYSFLGASKEPIFFEKLKFHSLYNTS-PRLS 85
Query: 49 FRRTSFLSSQKSNLGQSNF-------TQSIYPFGVLTSRSYASAAEAIAS---ESELSGS 98
FR +S+ + +G+ +F + + G R Y S AEA++S E ++SG+
Sbjct: 86 FRAIGEISTHEDFMGKPSFIFLRNSDSTNGNRCGGFCPRGYVSVAEAVSSTDVEDDVSGA 145
Query: 99 EEVQELIDQ 107
+EV+EL+ +
Sbjct: 146 DEVRELLPE 154
>gi|105922710|gb|ABF81432.1| TIR-NBS-TIR-TIR-WRKY type disease resistance protein [Populus
trichocarpa]
Length = 1251
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 381 GRRYGVIECDPLVRKGLEKTG-RHMIIPYM 409
++YGVI+CDPLV KGLEKTG R I P +
Sbjct: 16 AKKYGVIQCDPLVLKGLEKTGARETIEPAL 45
>gi|266634773|gb|ACY78115.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB2]
Length = 263
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 405 IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH---GAR----QQRETIKMTPRSQLEPV 457
++ Y PML+ P++W G GG +L + G R + + + + E V
Sbjct: 143 VVKYPPMLIQPMDWEGQYNGG--YLTEWFKHNSPMCGIRFIKKEHKHWVIDNLNNGAELV 200
Query: 458 FQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD 508
A++ S +R+NK IL ++ + A + GL + P P P T+D
Sbjct: 201 KAAMNKAQSVPYRINKDILAILRKAVAIRVGILGLPSYQPAPKPAFPFTED 251
>gi|393775025|ref|ZP_10363342.1| hypothetical protein WSK_4352, partial [Novosphingobium sp. Rr
2-17]
gi|392719538|gb|EIZ77086.1| hypothetical protein WSK_4352, partial [Novosphingobium sp. Rr
2-17]
Length = 294
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 467 TKWRVNKRILGVIDRMWASGGCLA---GLVDQEDVPLPEKPNTDDE-TEIKKWK----WK 518
K R R+ D A G LA ++D VP P++ NT +E IK+ + WK
Sbjct: 115 VKARAIDRLFARFDAALADRGYLAMGGQIIDATVVPAPKQRNTQEEKAAIKEGRIPERWK 174
Query: 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 578
K AK + ++ + R ++ + ++ D + F P +L A PM Y NH+G D
Sbjct: 175 DKPAKARQKDRDA-RWSVKYTKAKVKEGADPKSFK-PVDL-----AIPMFGYKNHIGIDR 227
Query: 579 CRGVL 583
G++
Sbjct: 228 THGLI 232
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,938,246,978
Number of Sequences: 23463169
Number of extensions: 477205241
Number of successful extensions: 1299380
Number of sequences better than 100.0: 733
Number of HSP's better than 100.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1295996
Number of HSP's gapped (non-prelim): 950
length of query: 686
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 536
effective length of database: 8,839,720,017
effective search space: 4738089929112
effective search space used: 4738089929112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)