Query 005638
Match_columns 686
No_of_seqs 222 out of 420
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 100.0 4E-120 1E-124 1061.1 36.4 499 136-686 26-542 (883)
2 3spa_A Mtrpol, DNA-directed RN 100.0 2E-107 5E-112 956.9 38.9 503 131-686 293-831 (1134)
3 3q23_A Virion RNA polymerase; 95.7 0.055 1.9E-06 63.1 12.3 213 455-686 338-576 (1118)
4 1iv0_A Hypothetical protein; r 20.3 30 0.001 30.1 0.9 25 661-685 44-68 (98)
5 3bhw_A Uncharacterized protein 16.2 1.1E+02 0.0037 30.0 4.0 30 321-350 136-165 (209)
6 1nu0_A Hypothetical protein YQ 13.9 39 0.0013 31.2 0.1 18 668-685 53-70 (138)
7 2jro_A Uncharacterized protein 11.5 52 0.0018 27.9 0.1 30 560-600 20-51 (78)
8 1vff_A Beta-glucosidase; glyco 11.4 2.3E+02 0.008 30.6 5.3 58 590-648 300-366 (423)
9 2e9l_A Cytosolic beta-glucosid 10.4 1.8E+02 0.0063 32.0 4.0 59 590-648 347-421 (469)
10 1ny9_A Transcriptional activat 9.8 2.4E+02 0.0082 25.4 4.0 54 136-189 33-89 (143)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=100.00 E-value=3.6e-120 Score=1061.09 Aligned_cols=499 Identities=26% Similarity=0.453 Sum_probs=423.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-hccCccccccc
Q 005638 136 AKYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ-DKWKHMTYAPY 213 (686)
Q Consensus 136 ~~~~-~l~eRQ~~lE~~a~~~a~~r~r~~~~~~~~~g~a~~~p~~~~ll~~W~~~L~~~I~~e~~~~~-~~~~r~~y~p~ 213 (686)
+.|+ .|++||++||++++++|++||++.+++|+++|+++++|++++++.+|+++|+++|+++++..+ +.+.++.|+||
T Consensus 26 ~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~ 105 (883)
T 1msw_D 26 DHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQF 105 (883)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 3454 568999999999999999999999999999999999999999999999999999999988776 35668999999
Q ss_pred cccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCChHHhHH
Q 005638 214 FNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293 (686)
Q Consensus 214 L~~l~pe~lA~Iti~~~l~~l~~~~~~~~v~~la~~IG~aVE~E~~~~~~~~~~kk~~~~~~~~~~~~~~l~~~~~~~~k 293 (686)
|++|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++++.++.++++.+ +
T Consensus 106 L~~l~~e~lA~iti~~~l~~~~~-~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~-------------------~ 165 (883)
T 1msw_D 106 LQEIKPEAVAYITIKTTLACLTS-ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKK-------------------N 165 (883)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHH-CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH-------------------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------H
Confidence 99999999999999999999987 467899999999999999999999988766543221 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCce
Q 005638 294 EQEKLKKRVTSLIKKQKLQQVRG-IVKG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAF 367 (686)
Q Consensus 294 ~~~~lrk~~~~l~k~~~~~~~~~-~~~~----~~~~~~W~~~~~~kVG~~Li~~L~~~-~~i~~~~~~~~~~~~~~~PAF 367 (686)
..+.++++.+...++...+.+.. ..+. .+++.+|+..++++||++|+++|+++ +.|+++..
T Consensus 166 ~~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~------------- 232 (883)
T 1msw_D 166 VEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ------------- 232 (883)
T ss_dssp TSHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc-------------
Confidence 11233333333333333333332 1121 36789999999999999999999995 66654221
Q ss_pred EEEeeeeeecccC-CeEEEEEEeCHHHHHHHHhc---cccccCCCCceeeCCcCcccCCCcccccc---CcceeecCcch
Q 005638 368 VHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKT---GRHMIIPYMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGAR 440 (686)
Q Consensus 368 ~h~~~~~~~~~~~-~k~~gvi~~~~~v~~~l~~~---~~~~~~~~lPMlvpPkpW~~~~~GGYL~~---~~~l~R~~~~~ 440 (686)
..++ ++++|+|++||.+++.+.+. ...+.+.+|||||||+||+++.+||||+. +..++|++.
T Consensus 233 ---------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~-- 301 (883)
T 1msw_D 233 ---------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS-- 301 (883)
T ss_dssp -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS--
T ss_pred ---------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC--
Confidence 1122 57899999999999999763 23455569999999999999999999975 345677653
Q ss_pred hhHHHHHcCCCCChhHHHHHHHhhcCccceechhHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHH
Q 005638 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNTDD--ETEIKKWKW 517 (686)
Q Consensus 441 ~q~~~l~~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~wk~ 517 (686)
+.++++..+.+++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.| ++++++|++
T Consensus 302 --~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~ 379 (883)
T 1msw_D 302 --KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR 379 (883)
T ss_dssp --TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred --HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHH
Confidence 345666677899999999999999999999999999999999 999999999998899999987644 678899999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCccccchhheecccCCcCchhhHH
Q 005638 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597 (686)
Q Consensus 518 ~~~~~~~~~~~~~S~R~~~~~~L~vA~~f~d~~~fYfPhnlDFRGR~YP~~p~Ln~qGsDl~RsLL~FaegkpLG~~Gl~ 597 (686)
.++.+++.++++||+||+++++|+||++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+
T Consensus 380 ~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~ 458 (883)
T 1msw_D 380 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYY 458 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHH
Confidence 999999999999999999999999999999988999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHhHHHHHHhccCCCCcchhhhcCCCHHHHHHHHHHHHHHhcCCCCCCccccCC
Q 005638 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677 (686)
Q Consensus 598 WLkIhlAN~~g~G~DK~s~~eR~~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~s~~P~~y~S~lP 677 (686)
|||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+||||++|+++|+ +|+||||
T Consensus 459 WLkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lP 533 (883)
T 1msw_D 459 WLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLP 533 (883)
T ss_dssp HHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCC
T ss_pred HHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--ccccccc
Confidence 9999999999 899999999999999999999999999998 5899999999999999999999999876 8999999
Q ss_pred cccccCCCC
Q 005638 678 VHMVFSVFT 686 (686)
Q Consensus 678 VhqDGSCsg 686 (686)
|||||||||
T Consensus 534 VhqDgSCnG 542 (883)
T 1msw_D 534 LAFDGSCSG 542 (883)
T ss_dssp EEEECSCHH
T ss_pred cccCCCCcH
Confidence 999999998
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-107 Score=956.92 Aligned_cols=503 Identities=29% Similarity=0.506 Sum_probs=381.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 005638 131 TGMGTAKYYMLKRRQIKIETEAW------------EQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ 198 (686)
Q Consensus 131 ~~~~~~~~~~l~eRQ~~lE~~a~------------~~a~~r~r~~~~~~~~~g~a~~~p~~~~ll~~W~~~L~~~I~~e~ 198 (686)
..+.....+.+.+.|+.+|..+. +..+..+|+.+ .++..+|...|..+|+++.
T Consensus 293 ~~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l---------------~~~~~~w~~~l~~~~~~~~ 357 (1134)
T 3spa_A 293 LHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL---------------KTLRDQWEKALCRALRETK 357 (1134)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999997632 12233455544 6677899999999999877
Q ss_pred HHhh--hccCccccccccccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 005638 199 ATAQ--DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276 (686)
Q Consensus 199 ~~~~--~~~~r~~y~p~L~~l~pe~lA~Iti~~~l~~l~~~~~~~~v~~la~~IG~aVE~E~~~~~~~~~~kk~~~~~~~ 276 (686)
.... ....+..++|||+.|+.+.++.|.|.++..+. . +|..++.++..||..|++++.+++-....-
T Consensus 358 ~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l~-~--~g~~~~~~~~~lg~~~~~~~~~~~~~~~~~-------- 426 (1134)
T 3spa_A 358 NRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALP-A--QGESFTTLARELSARTFSRHVVQRQRVSGQ-------- 426 (1134)
T ss_dssp HHHHHHHHTTCCCSTGGGGSSCHHHHHHHHHHHHHHCC-T--TCEEHHHHHHHHHHHHHHHHHHHHHHHHTH--------
T ss_pred HHHHHhhccCCCccccceeeCCHHHHHHHHHHHHHHhc-c--cCccHHHHHHHHHHHHHHHHHHHHHHhhhH--------
Confidence 6543 35668899999999999999997666655543 3 346778899999999999998864322110
Q ss_pred CCCCCCCCCCChHHhHHHHHHHHHHHHHH---HHH--------HHHHHHHhhhhC-CCCCCCCCHHHHHHHHHHHHHHHH
Q 005638 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSL---IKK--------QKLQQVRGIVKG-HVDSKPWGQDALVKVGCRLIQLLM 344 (686)
Q Consensus 277 ~~~~~~~l~~~~~~~~k~~~~lrk~~~~l---~k~--------~~~~~~~~~~~~-~~~~~~W~~~~~~kVG~~Li~~L~ 344 (686)
.+.+.+....- +.. .....++.+... ...+.+|+..++++||++|+++|+
T Consensus 427 ------------------~~~~~~~y~~y~~~~~~~~~~~~~~~~r~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~ 488 (1134)
T 3spa_A 427 ------------------VQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLV 488 (1134)
T ss_dssp ------------------HHHHHHHHHHHGGGTCSSCCCSSCCCHHHHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhCCcccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000100000 000 000112222222 235789999999999999999999
Q ss_pred HHccccCCCCCCCCCCCCccCceEEEeeeeeecccCCeEEEEEEeCHHHHHHHHhcccc---ccCCCCceeeCCcCcccC
Q 005638 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH---MIIPYMPMLVPPLNWRGY 421 (686)
Q Consensus 345 ~~~~i~~~~~~~~~~~~~~~PAF~h~~~~~~~~~~~~k~~gvi~~~~~v~~~l~~~~~~---~~~~~lPMlvpPkpW~~~ 421 (686)
++++|++...+ +++....+|||+|+|++. +++++|+|++||.+.+.+++.... +.+.+|||||||+||+++
T Consensus 489 ~~~~i~~~~~~-~~~~~~~~paf~h~y~~~-----~~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~ 562 (1134)
T 3spa_A 489 QATQMPCSLDK-PHRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSP 562 (1134)
T ss_dssp HHCBCCC------------CBSEEEEEC---------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEET
T ss_pred hhccCCccccC-CCCCcccccceEEEEEEE-----cCcEEEEEEECHHHHHHHHhccccccccCcCCCCcccCCCCCCCC
Confidence 99999875543 334567899999999742 478899999999999999875432 334599999999999999
Q ss_pred CCccccccCcceeecCcchhh-HHHHHcCCCCChhHHHHHHHhhcCccceechhHHHHHHHHHhc-CCCCCCCCCCC-CC
Q 005638 422 NRGGHFFLPSYVMRTHGARQQ-RETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS-GGCLAGLVDQE-DV 498 (686)
Q Consensus 422 ~~GGYL~~~~~l~R~~~~~~q-~~~l~~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~~-g~~i~~l~~~~-~~ 498 (686)
++||||+.++.+||+++...| ..++++..+++|+.||++||+||+|||+||++||+|+.++|++ |+++.+||+.. +.
T Consensus 563 ~~GGYl~~~t~~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~ 642 (1134)
T 3spa_A 563 HSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 642 (1134)
T ss_dssp TEEESSSSCCCSBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC---
T ss_pred CCceeEecCcceeecCCChHHHHHHHHhccccccHHHHHHHHHHhCCCcEecHHHHHHHHHHHHhcCCCcCCCCCCcccc
Confidence 999999999999999755544 4455666778999999999999999999999999999999986 55678888753 34
Q ss_pred CCCC---CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCc
Q 005638 499 PLPE---KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575 (686)
Q Consensus 499 p~P~---~p~~~d~~~~~~wk~~~~~~~~~~~~~~S~R~~~~~~L~vA~~f~d~~~fYfPhnlDFRGR~YP~~p~Ln~qG 575 (686)
|.|+ .|.+.++++.++|+++++++++.++++||+||+++|+|+||++|+|+ .||||||||||||+||+||||||||
T Consensus 643 p~~p~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqG 721 (1134)
T 3spa_A 643 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLG 721 (1134)
T ss_dssp -------------------------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-eeecccccCCCCcCcCCCCCcCccc
Confidence 5444 23445677888999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred cccchhheecccCCcCchhhHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHhHHHHHHhccCCCCcchhhhcCCCHHHHH
Q 005638 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK-LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCL 654 (686)
Q Consensus 576 sDl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~g~G~DK-~s~~eR~~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfL 654 (686)
+|+|||||+||+|+|||++||+|||||+||+| |+|| .||+||++||++|+++|++||+|||+|.+||++||+|||||
T Consensus 722 sDl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfL 799 (1134)
T 3spa_A 722 SDVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTL 799 (1134)
T ss_dssp SHHHHHTEEESSCEECTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHH
T ss_pred chHHHHHHHhccCCcCCcchHHHHHHHHHHhc--CCCcCCCHHHHHHHHHHHHHHHHHHHhCcccchhHHHhCCCHHHHH
Confidence 99999999999999999999999999999999 8998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccccCCcccccCCCC
Q 005638 655 ATCINLSEALRSPSPESTISHIPVHMVFSVFT 686 (686)
Q Consensus 655 A~C~El~~a~~s~~P~~y~S~lPVhqDGSCsg 686 (686)
|+||||++|++++||++|+|||||||||||||
T Consensus 800 A~C~El~~a~~~~dp~~y~S~lPVhqDGSCNG 831 (1134)
T 3spa_A 800 ACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 831 (1134)
T ss_dssp HHHHHHHHHHTSSSGGGCEECCEEEECCSSHH
T ss_pred HHHHHHHHHHhcCCCccccccCccccCCCCcH
Confidence 99999999999999999999999999999998
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=95.74 E-value=0.055 Score=63.11 Aligned_cols=213 Identities=14% Similarity=0.082 Sum_probs=128.0
Q ss_pred hHHHHHHHhhcCccceechhHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005638 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR 533 (686)
Q Consensus 455 ~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~~g-~~i~~l~~~~~~p~P~~p~~~d~~~~~~wk~~~~~~~~~~~~~~S~R 533 (686)
+.+-.+|...|.+|++||..+..+...+=+.+ ..+.+. .++..| ....+..+. +.-+| .+.+
T Consensus 338 ~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa---~~l~~e----~ln~~~RkS-------lEGKN---~sV~ 400 (1118)
T 3q23_A 338 PEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGA---GTLNKE----LLNDNHAKS-------LEGKN---RSVE 400 (1118)
T ss_dssp HHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSC---CSCCTT----SSCHHHHHH-------HHHHH---HHHH
T ss_pred HHHHHHHHHhhccCceecccHHHHHHHhchhHHHHHhCc---cccccc----ccchhHHhh-------hhccc---HHHH
Confidence 34557889999999999999999977764432 112222 111111 111111111 11111 1111
Q ss_pred hhH-------HHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCccccchhheecccC-CcCc---hhhHHHHHHH
Q 005638 534 CDI-------ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG-HPLG---KAGLHWLKIH 602 (686)
Q Consensus 534 ~~~-------~~~L~vA~~f~d~~~fYfPhnlDFRGR~YP~~p~Ln~qGsDl~RsLL~Faeg-kpLG---~~Gl~WLkIh 602 (686)
.++ +..-+++.... .-.+|||++|+-=||.=-. .-+|||.+=|-|-++.=.+. -.|+ ...++-|+.|
T Consensus 401 rdi~~~~d~iN~i~e~~~~~~-~vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLg 478 (1118)
T 3q23_A 401 DSYNQLFSVIEQVRAQSEDIS-TVPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLG 478 (1118)
T ss_dssp HHHHHHHHHHHHHHHHCSCGG-GCCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccc-cCceeeeechhhhhhhhhc-CCCCchhHHHHHHHhcCCceEeecCCCCHHHHHHHHHH
Confidence 111 11222222111 1269999999665665432 67899999999999887554 3455 4568888999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHH-----------hHHHHHHhccCCCC---cchhhhcCCCHHHHHHHHHHHHHHhcCCC
Q 005638 603 LANLYAGGVDKLSYEGRVAFTEN-----------HLDDIFDSADRPLE---GRRWWLGAEDPFQCLATCINLSEALRSPS 668 (686)
Q Consensus 603 lAN~~g~G~DK~s~~eR~~wv~~-----------n~~~I~dsA~dPl~---g~~wW~~Ad~PwQfLA~C~El~~a~~s~~ 668 (686)
+|-.+|=.+||.+-+.-++=+.+ -+.+|+....=|-. -..=-+++++||-.+-+-+||++++...+
T Consensus 479 vaQslGiKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G 558 (1118)
T 3q23_A 479 LAQALDIKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAED 558 (1118)
T ss_dssp HHHHTTCCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCcchhcccHHHHHHHHHHHhcccccHHHHHHHHHhccCCCChhHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999656788887665554443 23344443332210 00012678899655558999999887655
Q ss_pred CCCccccCCcccccCCCC
Q 005638 669 PESTISHIPVHMVFSVFT 686 (686)
Q Consensus 669 P~~y~S~lPVhqDGSCsg 686 (686)
-+.|.+.|-+-.||--||
T Consensus 559 ~asF~T~L~~ElDGVTNG 576 (1118)
T 3q23_A 559 KSAFVTPLYVEADGVTNG 576 (1118)
T ss_dssp GGGEEECCEEEEEETTHH
T ss_pred CccceeeeEEEecCcccc
Confidence 578999999999997665
No 4
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=20.30 E-value=30 Score=30.13 Aligned_cols=25 Identities=8% Similarity=0.103 Sum_probs=18.7
Q ss_pred HHHhcCCCCCCccccCCcccccCCC
Q 005638 661 SEALRSPSPESTISHIPVHMVFSVF 685 (686)
Q Consensus 661 ~~a~~s~~P~~y~S~lPVhqDGSCs 685 (686)
.+.++.-+|...+-++|.++|||-+
T Consensus 44 ~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 44 LDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHcCCCEEEEeeccCCCCCcC
Confidence 3333333678999999999999964
No 5
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.50A {Magnetospirillum magneticum}
Probab=16.17 E-value=1.1e+02 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcccc
Q 005638 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQ 350 (686)
Q Consensus 321 ~~~~~~W~~~~~~kVG~~Li~~L~~~~~i~ 350 (686)
......|+..++-|+++.+..+|.|++.+.
T Consensus 136 ~~~v~~wSdsT~kKl~q~~~~~L~eaGlL~ 165 (209)
T 3bhw_A 136 DPLMPVWQDSTANKLADCVYRILVEVGYIT 165 (209)
T ss_dssp CTTC----CHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHcCCcC
Confidence 356779999999999999999999999984
No 6
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=13.88 E-value=39 Score=31.16 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCCCccccCCcccccCCC
Q 005638 668 SPESTISHIPVHMVFSVF 685 (686)
Q Consensus 668 ~P~~y~S~lPVhqDGSCs 685 (686)
+|+..+-++|.++|||-+
T Consensus 53 ~v~~iVvGlP~~mdGt~~ 70 (138)
T 1nu0_A 53 QPDEIIVGLPLNMDGTEQ 70 (138)
T ss_dssp CCSEEEEEEEECTTSCBC
T ss_pred CCCEEEEecccCCCcCcC
Confidence 678999999999999854
No 7
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=11.51 E-value=52 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCCccccCCCCCCCCccccchhheecccCCcCchh--hHHHHH
Q 005638 560 FRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA--GLHWLK 600 (686)
Q Consensus 560 FRGR~YP~~p~Ln~qGsDl~RsLL~FaegkpLG~~--Gl~WLk 600 (686)
||||+|=- ..|.++|..|+-|=++ .-.++.
T Consensus 20 F~Gri~I~-----------g~G~FeFd~GkillP~~~d~~~~~ 51 (78)
T 2jro_A 20 LTGVIWVK-----------DLGRLEFEKGRFLLPRKSLPKVKQ 51 (78)
T ss_dssp CSEEEEET-----------TTEEEEEETTEECCCSSCCHHHHH
T ss_pred ccceEEEE-----------ecccEEEcCCEEeCCccccHHHHH
Confidence 89999953 5689999999977432 444443
No 8
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4
Probab=11.41 E-value=2.3e+02 Score=30.61 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=41.5
Q ss_pred cCchhhHHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHhHHHHHHhccC--CCCcchhhhcCC
Q 005638 590 PLGKAGLHWLKIHLANLYA-------GGVDKLSYEGRVAFTENHLDDIFDSADR--PLEGRRWWLGAE 648 (686)
Q Consensus 590 pLG~~Gl~WLkIhlAN~~g-------~G~DK~s~~eR~~wv~~n~~~I~dsA~d--Pl~g~~wW~~Ad 648 (686)
++.+.||+.+-..+ ..|+ ||+.-..=+.|++|..+|+..+.++-++ |+.|--+|.=-|
T Consensus 300 ~i~P~gl~~~L~~~-~rY~~Pi~ITENG~~~~dD~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~D 366 (423)
T 1vff_A 300 SVYPKGIYMALKKA-SRYGRPLYITENGIATLDDEWRVEFIIQHLQYVHKAIEDGLDVRGYFYWSFMD 366 (423)
T ss_dssp CCCTHHHHHHHHHH-GGGCSCEEEEECCCCCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred ccCHHHHHHHHHHH-HHcCCCEEEEeCCCCCCccHHHHHHHHHHHHHHHHHHHcCCCEEEEEecCCCc
Confidence 45678999999999 9996 4553333567999999999998876554 344555665444
No 9
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Probab=10.43 E-value=1.8e+02 Score=31.96 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=43.9
Q ss_pred cCchhhHHHHHHHHHHhhcC--------CCC-----CCCHHHHHHHHHHhHHHHHHhcc-C--CCCcchhhhcCC
Q 005638 590 PLGKAGLHWLKIHLANLYAG--------GVD-----KLSYEGRVAFTENHLDDIFDSAD-R--PLEGRRWWLGAE 648 (686)
Q Consensus 590 pLG~~Gl~WLkIhlAN~~g~--------G~D-----K~s~~eR~~wv~~n~~~I~dsA~-d--Pl~g~~wW~~Ad 648 (686)
++.+.||+.+-.++.+.|++ |+. .+.=+.|+.|..+|+..+.++-+ | |+.|-..|.=-|
T Consensus 347 ~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~d~~~~v~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~D 421 (469)
T 2e9l_A 347 YVVPWGVCKLLKYIKDTYNNPVIYITENGFPQSDPAPLDDTQRWEYFRQTFQELFKAIQLDKVNLQVYCAWSLLD 421 (469)
T ss_dssp ECCTHHHHHHHHHHHHHTTSCCEEEEEECCCEESSCCSSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSBC
T ss_pred ccChHHHHHHHHHHHHHhCCCCEEEEecCCCCCcccccCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeccccc
Confidence 56778999999999999963 554 44557899999999999998766 5 344555565444
No 10
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=9.75 E-value=2.4e+02 Score=25.38 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCCChhHHHHHHHHHHH
Q 005638 136 AKYYMLKRRQIKIETEAWEQA---AKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEP 189 (686)
Q Consensus 136 ~~~~~l~eRQ~~lE~~a~~~a---~~r~r~~~~~~~~~g~a~~~p~~~~ll~~W~~~ 189 (686)
+.+....+|+..+..+.++.. .....+.+..+...|..++.+-++.++..|..-
T Consensus 33 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~~~~g~~p~s~eaq~l~~~h~~~ 89 (143)
T 1ny9_A 33 DAYRQSKEKTASYTKEDWQRIQDEADELTRRFVALMDAGEPADSEGAMDAAEDHRQG 89 (143)
T ss_dssp -----------------CCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 344555566666666554322 233344555666778778899999998888763
Done!