Query 005638
Match_columns 686
No_of_seqs 222 out of 420
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005638.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005638hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mswd_ e.8.1.3 (D:) T7 RNA po 100.0 5E-108 3E-112 966.9 37.7 497 140-686 30-541 (882)
2 d1qvba_ c.1.8.4 (A:) beta-Glyc 21.2 31 0.0022 35.4 4.1 61 588-648 359-428 (481)
3 d1iv0a_ c.55.3.8 (A:) Hypothet 20.8 12 0.00089 30.5 0.6 26 660-685 43-68 (98)
4 d1uwsa_ c.1.8.4 (A:) beta-Glyc 13.0 66 0.0048 32.8 4.2 61 588-648 360-429 (489)
5 d1vffa1 c.1.8.4 (A:1-423) Beta 12.9 99 0.0072 30.6 5.5 60 588-648 298-366 (423)
6 d1nu0a_ c.55.3.8 (A:) Hypothet 10.4 30 0.0022 29.6 0.3 26 660-685 45-70 (138)
7 d1vhxa_ c.55.3.8 (A:) Hypothet 9.5 40 0.0029 28.8 0.8 26 659-684 45-70 (140)
8 d1agia_ d.5.1.1 (A:) Angiogeni 8.6 32 0.0023 29.3 -0.3 8 676-683 112-119 (125)
9 d1dy5a_ d.5.1.1 (A:) Ribonucle 8.5 26 0.0019 29.8 -0.9 8 676-683 116-123 (124)
10 d1cf7b_ a.4.5.17 (B:) Cell cyc 8.2 60 0.0044 25.7 1.3 9 456-464 55-63 (82)
No 1
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=100.00 E-value=4.6e-108 Score=966.86 Aligned_cols=497 Identities=25% Similarity=0.444 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCccccccccccCC
Q 005638 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLP 218 (686)
Q Consensus 140 ~l~eRQ~~lE~~a~~~a~~r~r~~~~~~~~~g~a~~~p~~~~ll~~W~~~L~~~I~~e~~~~~~-~~~r~~y~p~L~~l~ 218 (686)
.|++||++||+++++.|++||++.+++++++|.+++++|+++++.+|+++|+++|+++++..+. .+.++.|+|||..|+
T Consensus 30 ~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~~~~~~yL~~l~ 109 (882)
T d1mswd_ 30 RLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIK 109 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHhcCC
Confidence 4888999999999999999999999999999999999999999999999999999998887654 456788999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCChHHhHHHHHHH
Q 005638 219 ADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298 (686)
Q Consensus 219 pe~lA~Iti~~~l~~l~~~~~~~~v~~la~~IG~aVE~E~~~~~~~~~~kk~~~~~~~~~~~~~~l~~~~~~~~k~~~~l 298 (686)
||++|+|||+++|++++++ ++.++++++.+||+|||+|++++++.+..++.+.+.. .+.+
T Consensus 110 pe~lA~Itik~~ld~l~~~-~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~-------------------~~~~ 169 (882)
T d1mswd_ 110 PEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV-------------------EEQL 169 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT-------------------SHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhh-------------------HHHH
Confidence 9999999999999999875 4578999999999999999999998877654332210 0122
Q ss_pred HHHHHHHHHHHHHHHHH-----hhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCceEEEeee
Q 005638 299 KKRVTSLIKKQKLQQVR-----GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373 (686)
Q Consensus 299 rk~~~~l~k~~~~~~~~-----~~~~~~~~~~~W~~~~~~kVG~~Li~~L~~~~~i~~~~~~~~~~~~~~~PAF~h~~~~ 373 (686)
+++.+...+++..+.+. +.......|.+|+..+++|||++|+++|++++.+.. .....
T Consensus 170 ~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~-----------------~~~~~ 232 (882)
T d1mswd_ 170 NKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVS-----------------LHRQN 232 (882)
T ss_dssp HHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEE-----------------EECC-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhccccccCccCHHHHHHHHHHHHHHHHHHhCCce-----------------eeccc
Confidence 22222223332222221 112223578899999999999999999999987621 11110
Q ss_pred eeecccCCeEEEEEEeCHHHHHHHHhcc---ccccCCCCceeeCCcCcccCCCccccccCcc---eeecCcchhhHHHHH
Q 005638 374 FTKEALKGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY---VMRTHGARQQRETIK 447 (686)
Q Consensus 374 ~~~~~~~~k~~gvi~~~~~v~~~l~~~~---~~~~~~~lPMlvpPkpW~~~~~GGYL~~~~~---l~R~~~~~~q~~~l~ 447 (686)
...++++.++|.++|++.+.++... ..+.+.+|||||||+||++..+||||+.... ++|++.. .++.
T Consensus 233 ---~~~~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~----~~~~ 305 (882)
T d1mswd_ 233 ---AGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK----KALM 305 (882)
T ss_dssp ----------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST----THHH
T ss_pred ---cccccCcCcceeecHHHHHHHHhhHhHHHhcCcccccccCCCccCCCCCcCCeeecCCCceeccccccH----hhhh
Confidence 0113667889999999998886542 2233449999999999999999999986543 5555432 2334
Q ss_pred cCCCCChhHHHHHHHhhcCccceechhHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHH
Q 005638 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNT--DDETEIKKWKWKVKTAKK 524 (686)
Q Consensus 448 ~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~--~d~~~~~~wk~~~~~~~~ 524 (686)
+....+++.||++||+||+|||+||++||+|++.+|+ .|+.++++|+....+.|++|.+ .+++++++|++..+.+++
T Consensus 306 ~~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (882)
T d1mswd_ 306 RYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYR 385 (882)
T ss_dssp HTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHHHHHHHH
T ss_pred hccccchHHHHHHHHHHhcCCeEeCHHHHHHHHHHHhcCCCcccccCcccccccCCcccccccCHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999998 5566788988777677766653 467789999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCccccchhheecccCCcCchhhHHHHHHHHH
Q 005638 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604 (686)
Q Consensus 525 ~~~~~~S~R~~~~~~L~vA~~f~d~~~fYfPhnlDFRGR~YP~~p~Ln~qGsDl~RsLL~FaegkpLG~~Gl~WLkIhlA 604 (686)
.+++.+|+||+++++|++|++|+|++.||||||+|||||+||+ |+|||||+|+|||||+||+|+|||++|++|||||+|
T Consensus 386 ~~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~wL~i~~A 464 (882)
T d1mswd_ 386 KDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 464 (882)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCCCceeeeeeeecccccccC-CCCCCCccchhhhhhhccCCCcccchhHHHHHHHHH
Confidence 9999999999999999999999998889999999999999997 589999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhHHHHHHhccCCCCcchhhhcCCCHHHHHHHHHHHHHHhcCCCCCCccccCCcccccCC
Q 005638 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMVFSV 684 (686)
Q Consensus 605 N~~g~G~DK~s~~eR~~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~s~~P~~y~S~lPVhqDGSC 684 (686)
|+| |+||+||+||++||++|++.|+++|+||+.+ .||.+||+||||||+|+||++++.++ +.|+|+|||||||||
T Consensus 465 n~~--g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~~--~~~~s~lpv~~D~sc 539 (882)
T d1mswd_ 465 NCA--GVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHHG--LSYNCSLPLAFDGSC 539 (882)
T ss_dssp HHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHHC--TTCEECCCEEEECSC
T ss_pred hcc--CcchhhHHHHHHHHHHhHHHHHhhhcCcchh-hhhhhCchhHHHHHHHHHHHHHHhcC--CcccccceeeeccCc
Confidence 999 8999999999999999999999999999975 79999999999999999999998854 689999999999999
Q ss_pred CC
Q 005638 685 FT 686 (686)
Q Consensus 685 sg 686 (686)
||
T Consensus 540 nG 541 (882)
T d1mswd_ 540 SG 541 (882)
T ss_dssp HH
T ss_pred cH
Confidence 98
No 2
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera aggregans [TaxId: 54254]}
Probab=21.20 E-value=31 Score=35.40 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCcCchhhHHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHhHHHHHHhccC--CCCcchhhhcCC
Q 005638 588 GHPLGKAGLHWLKIHLANLYA-------GGVDKLSYEGRVAFTENHLDDIFDSADR--PLEGRRWWLGAE 648 (686)
Q Consensus 588 gkpLG~~Gl~WLkIhlAN~~g-------~G~DK~s~~eR~~wv~~n~~~I~dsA~d--Pl~g~~wW~~Ad 648 (686)
|-++-+.||+++-.++.+.|+ ||+....=+.|++|..+|+..+..+.++ |+.|--+|.=-|
T Consensus 359 gw~i~P~Gl~~~L~~~~~~Y~~Pi~ITENG~~~~~D~~Ri~yl~~hL~~~~~Ai~dGv~V~GY~~WSl~D 428 (481)
T d1qvba_ 359 GWEVYPEGLYLLLKELYNRYGVDLIVTENGVSDSRDALRPAYLVSHVYSVWKAANEGIPVKGYLHWSLTD 428 (481)
T ss_dssp CCBCCTHHHHHHHHHHHHHHCCEEEEEECCCCCTTCSSHHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEECCCCCcccChHHHHHHHHHHHHHHHHHHCCCCEEEEeeccchh
Confidence 445668899999999999996 5776554456999999999999998766 555666676554
No 3
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=20.75 E-value=12 Score=30.46 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHhcCCCCCCccccCCcccccCCC
Q 005638 660 LSEALRSPSPESTISHIPVHMVFSVF 685 (686)
Q Consensus 660 l~~a~~s~~P~~y~S~lPVhqDGSCs 685 (686)
|.+.++.-+|..++-++|.++||+=|
T Consensus 43 l~~ii~e~~i~~iVvGlP~~~dG~~~ 68 (98)
T d1iv0a_ 43 LLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHhhccceeEcccccccCCCcC
Confidence 34444444789999999999999854
No 4
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=13.03 E-value=66 Score=32.81 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=44.9
Q ss_pred CCcCchhhHHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHhHHHHHHhccC--CCCcchhhhcCC
Q 005638 588 GHPLGKAGLHWLKIHLANLYA-------GGVDKLSYEGRVAFTENHLDDIFDSADR--PLEGRRWWLGAE 648 (686)
Q Consensus 588 gkpLG~~Gl~WLkIhlAN~~g-------~G~DK~s~~eR~~wv~~n~~~I~dsA~d--Pl~g~~wW~~Ad 648 (686)
|=++.+.||+++-..+.+.|+ ||+....=+.|+.|..+|++.+..+-+| |+.|--+|.=-|
T Consensus 360 gw~i~P~Gl~~~L~~~~~rY~~PI~ITENG~~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D 429 (489)
T d1uwsa_ 360 GWEFFPEGLYDVLTKYWNRYHLYMYVTENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLAD 429 (489)
T ss_dssp CCBCCTHHHHHHHHHHHHHHCCCEEEEECCCCCTTCSSHHHHHHHHHHHHHHHHHTTCCEEEEEESCSBC
T ss_pred CCccCchhhhHHHHHHhhccCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 335667899999999999985 5665544456999999999999998776 444555554444
No 5
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.94 E-value=99 Score=30.63 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=42.7
Q ss_pred CCcCchhhHHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHhHHHHHHhccC--CCCcchhhhcCC
Q 005638 588 GHPLGKAGLHWLKIHLANLYA-------GGVDKLSYEGRVAFTENHLDDIFDSADR--PLEGRRWWLGAE 648 (686)
Q Consensus 588 gkpLG~~Gl~WLkIhlAN~~g-------~G~DK~s~~eR~~wv~~n~~~I~dsA~d--Pl~g~~wW~~Ad 648 (686)
|-++.+.|++++... .+-|+ ||+.-..=+.|++|..+|+..+.++-+| |+.|--+|.=-|
T Consensus 298 gw~i~p~gl~~~~~~-~~~y~~Pi~ItENG~~~~dD~~Ri~yl~~hl~~~~~Ai~dGV~v~GY~~WSl~D 366 (423)
T d1vffa1 298 GWSVYPKGIYMALKK-ASRYGRPLYITENGIATLDDEWRVEFIIQHLQYVHKAIEDGLDVRGYFYWSFMD 366 (423)
T ss_dssp CCCCCTHHHHHHHHH-HGGGCSCEEEEECCCCCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred CceeccchhHHHHHH-HhccCceeEEecCCCCccCcHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcch
Confidence 335667899887665 47775 5666556688999999999999988666 444555665444
No 6
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=30 Score=29.64 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.3
Q ss_pred HHHHhcCCCCCCccccCCcccccCCC
Q 005638 660 LSEALRSPSPESTISHIPVHMVFSVF 685 (686)
Q Consensus 660 l~~a~~s~~P~~y~S~lPVhqDGSCs 685 (686)
+.+.++..+|..++-++|+++||+=|
T Consensus 45 l~~i~~e~~~~~iVvG~P~~~~g~~~ 70 (138)
T d1nu0a_ 45 IERLLKEWQPDEIIVGLPLNMDGTEQ 70 (138)
T ss_dssp HHHHHHHHCCSEEEEEEEECTTSCBC
T ss_pred HHHHhhccCccEEEeecccccccchH
Confidence 33333445789999999999999854
No 7
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=9.52 E-value=40 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCCCccccCCcccccCC
Q 005638 659 NLSEALRSPSPESTISHIPVHMVFSV 684 (686)
Q Consensus 659 El~~a~~s~~P~~y~S~lPVhqDGSC 684 (686)
+|.+.+..-+|..++-++|.++||+=
T Consensus 45 ~l~~ii~e~~i~~iViGlP~~~dg~~ 70 (140)
T d1vhxa_ 45 RLSELIKDYTIDKIVLGFPKNMNGTV 70 (140)
T ss_dssp HHHHHHTTSEEEEEEEECCCCBTTBC
T ss_pred HHHHHHHhhccceEEEecccccCCcc
Confidence 45555666688999999999999984
No 8
>d1agia_ d.5.1.1 (A:) Angiogenin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.63 E-value=32 Score=29.32 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCcccccC
Q 005638 676 IPVHMVFS 683 (686)
Q Consensus 676 lPVhqDGS 683 (686)
+|||.|||
T Consensus 112 ~PVH~d~s 119 (125)
T d1agia_ 112 LPVHFDES 119 (125)
T ss_dssp EEEEECTT
T ss_pred cCeeccce
No 9
>d1dy5a_ d.5.1.1 (A:) Ribonuclease A (also ribonuclease B, S) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.50 E-value=26 Score=29.83 Aligned_cols=8 Identities=50% Similarity=0.779 Sum_probs=0.0
Q ss_pred CCcccccC
Q 005638 676 IPVHMVFS 683 (686)
Q Consensus 676 lPVhqDGS 683 (686)
+|||.|||
T Consensus 116 vPVH~D~~ 123 (124)
T d1dy5a_ 116 VPVHFDAS 123 (124)
T ss_dssp EEEEEEEE
T ss_pred cceeccCc
No 10
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.18 E-value=60 Score=25.72 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=0.0
Q ss_pred HHHHHHHhh
Q 005638 456 PVFQALDTL 464 (686)
Q Consensus 456 ~v~~aLN~L 464 (686)
.||||||+|
T Consensus 55 RVYDALNVL 63 (82)
T d1cf7b_ 55 RVYDALNVL 63 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Done!