Query 005639
Match_columns 686
No_of_seqs 390 out of 3562
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 11:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-33 4.1E-38 331.2 25.8 510 86-662 69-592 (968)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-32 5.7E-37 320.9 24.5 446 29-629 471-944 (1153)
3 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-33 5.2E-38 312.1 14.7 235 2-269 432-676 (889)
4 PLN00113 leucine-rich repeat r 100.0 6.5E-31 1.4E-35 309.7 25.2 486 83-634 90-590 (968)
5 PLN03210 Resistant to P. syrin 99.9 2.3E-22 4.9E-27 237.2 25.1 345 83-486 555-910 (1153)
6 KOG4194 Membrane glycoprotein 99.9 5.4E-23 1.2E-27 206.3 8.3 391 82-649 48-447 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 2.7E-25 5.8E-30 213.2 -15.3 444 83-652 65-539 (565)
8 KOG0618 Serine/threonine phosp 99.8 2.3E-23 5.1E-28 219.9 -5.3 142 92-236 4-147 (1081)
9 KOG0444 Cytoskeletal regulator 99.8 2.7E-23 5.9E-28 209.7 -6.9 175 83-272 29-208 (1255)
10 KOG0444 Cytoskeletal regulator 99.8 9.8E-23 2.1E-27 205.7 -3.5 150 85-237 6-161 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 8E-24 1.7E-28 203.2 -11.5 482 86-678 45-553 (565)
12 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.4E-25 189.8 6.3 321 83-444 99-427 (873)
13 KOG0618 Serine/threonine phosp 99.7 1.2E-19 2.5E-24 192.3 -0.3 397 110-569 47-488 (1081)
14 KOG0617 Ras suppressor protein 99.7 5.8E-19 1.3E-23 150.3 -4.8 167 98-280 23-192 (264)
15 KOG0617 Ras suppressor protein 99.6 8.2E-18 1.8E-22 143.4 -4.8 159 79-241 26-188 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.5E-18 150.7 14.5 156 88-278 203-359 (788)
17 KOG4237 Extracellular matrix p 99.5 4.1E-15 9E-20 143.6 -1.3 143 68-212 50-199 (498)
18 PRK15387 E3 ubiquitin-protein 99.5 1.1E-12 2.5E-17 144.2 16.1 187 68-293 205-392 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.4E-17 145.2 14.1 177 84-290 197-374 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.3E-17 145.3 12.4 115 110-238 180-295 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.4 3.3E-13 7.2E-18 151.7 7.5 306 84-450 543-864 (889)
22 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.9E-18 131.7 -3.3 285 91-444 51-357 (498)
23 PF14580 LRR_9: Leucine-rich r 99.2 4.2E-11 9.1E-16 107.9 6.5 132 129-270 15-149 (175)
24 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-11 6.9E-16 123.9 4.1 179 86-273 23-233 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 2E-11 4.4E-16 125.3 2.2 151 113-272 3-176 (319)
26 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 7E-17 129.5 -3.8 179 86-282 75-255 (722)
27 PF14580 LRR_9: Leucine-rich r 99.1 9.3E-11 2E-15 105.7 5.5 100 132-233 41-147 (175)
28 KOG4341 F-box protein containi 99.1 1.9E-12 4.1E-17 126.5 -6.0 301 325-656 138-441 (483)
29 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.5E-16 125.5 -4.5 184 90-291 54-242 (722)
30 KOG1259 Nischarin, modulator o 98.9 1.2E-10 2.5E-15 109.0 -0.1 184 83-279 211-417 (490)
31 KOG4341 F-box protein containi 98.9 1.8E-11 4E-16 119.7 -6.4 306 283-646 138-457 (483)
32 KOG1259 Nischarin, modulator o 98.9 1.5E-10 3.3E-15 108.2 -1.1 127 108-239 284-412 (490)
33 COG4886 Leucine-rich repeat (L 98.8 4E-09 8.6E-14 111.6 5.5 185 91-291 98-285 (394)
34 COG4886 Leucine-rich repeat (L 98.8 9.2E-09 2E-13 108.8 6.0 168 131-312 114-286 (394)
35 KOG3207 Beta-tubulin folding c 98.6 9.6E-09 2.1E-13 101.6 1.0 133 130-273 143-283 (505)
36 KOG3207 Beta-tubulin folding c 98.5 3E-08 6.5E-13 98.2 2.1 190 83-278 118-318 (505)
37 PLN03150 hypothetical protein; 98.5 3.4E-07 7.5E-12 101.5 9.9 105 134-239 419-528 (623)
38 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.7E-12 70.0 3.7 58 109-167 2-60 (61)
39 PLN03150 hypothetical protein; 98.4 5.1E-07 1.1E-11 100.2 8.9 104 157-272 419-526 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.8E-12 69.1 3.6 58 133-190 1-61 (61)
41 PRK15386 type III secretion pr 98.4 1.1E-06 2.4E-11 89.1 8.3 61 406-486 51-111 (426)
42 KOG2120 SCF ubiquitin ligase, 98.3 3.2E-08 7E-13 93.0 -3.5 41 322-363 310-350 (419)
43 KOG3665 ZYG-1-like serine/thre 98.3 2.9E-07 6.3E-12 101.6 2.0 82 106-188 146-230 (699)
44 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.4E-12 99.6 -2.2 172 86-276 72-247 (414)
45 KOG1859 Leucine-rich repeat pr 98.2 1.7E-08 3.8E-13 105.6 -9.6 127 133-273 164-291 (1096)
46 PRK15386 type III secretion pr 98.2 2.7E-06 5.8E-11 86.4 6.1 61 529-599 50-110 (426)
47 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 7E-11 56.9 3.9 37 134-170 2-38 (44)
48 KOG2120 SCF ubiquitin ligase, 98.1 3E-07 6.6E-12 86.6 -3.0 17 348-364 310-326 (419)
49 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 55.5 4.0 34 179-212 2-35 (44)
50 KOG0531 Protein phosphatase 1, 98.0 9.7E-07 2.1E-11 93.6 -0.2 172 83-275 92-269 (414)
51 KOG3665 ZYG-1-like serine/thre 98.0 3.6E-06 7.9E-11 93.0 3.7 134 106-239 120-263 (699)
52 KOG1909 Ran GTPase-activating 97.8 3.2E-06 7E-11 81.8 -0.4 179 87-273 93-310 (382)
53 KOG1947 Leucine rich repeat pr 97.7 1.7E-06 3.7E-11 94.4 -4.5 125 321-447 184-309 (482)
54 KOG1644 U2-associated snRNP A' 97.7 6.8E-05 1.5E-09 67.2 5.7 82 129-210 60-149 (233)
55 KOG1644 U2-associated snRNP A' 97.7 6.8E-05 1.5E-09 67.2 5.1 104 157-271 43-150 (233)
56 KOG1859 Leucine-rich repeat pr 97.6 1.6E-06 3.6E-11 91.3 -6.1 125 84-212 162-290 (1096)
57 KOG4579 Leucine-rich repeat (L 97.6 1.2E-05 2.5E-10 67.2 -0.7 89 130-219 50-140 (177)
58 KOG4579 Leucine-rich repeat (L 97.5 7.3E-06 1.6E-10 68.4 -2.3 109 87-196 28-141 (177)
59 KOG1909 Ran GTPase-activating 97.5 4.2E-05 9.1E-10 74.3 2.5 154 85-239 119-311 (382)
60 KOG2982 Uncharacterized conser 97.5 3.4E-05 7.5E-10 73.1 0.7 81 178-272 71-157 (418)
61 KOG2123 Uncharacterized conser 97.3 2E-05 4.3E-10 73.9 -3.3 105 155-267 18-123 (388)
62 KOG2739 Leucine-rich acidic nu 97.2 0.0002 4.4E-09 67.1 2.5 111 154-274 41-156 (260)
63 KOG2982 Uncharacterized conser 97.1 0.00043 9.3E-09 65.9 3.2 103 88-191 47-159 (418)
64 KOG1947 Leucine rich repeat pr 97.0 6.9E-05 1.5E-09 81.8 -3.1 196 406-654 187-389 (482)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 63.9 1.7 59 130-188 62-126 (260)
66 KOG2123 Uncharacterized conser 96.6 0.00013 2.8E-09 68.7 -4.0 100 107-232 18-123 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.0014 3.1E-08 61.6 2.7 72 349-423 240-318 (388)
68 PF13306 LRR_5: Leucine rich r 96.3 0.012 2.6E-07 50.9 7.0 115 106-228 10-128 (129)
69 KOG3864 Uncharacterized conser 95.7 0.0013 2.8E-08 59.3 -2.1 67 555-628 123-189 (221)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0037 8E-08 34.9 0.1 19 180-198 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0059 1.3E-07 34.1 0.8 21 134-154 1-21 (22)
72 COG5238 RNA1 Ran GTPase-activa 95.2 0.019 4.2E-07 54.3 3.8 83 130-212 27-131 (388)
73 PF13306 LRR_5: Leucine rich r 95.2 0.043 9.4E-07 47.3 6.0 107 123-235 2-112 (129)
74 KOG3864 Uncharacterized conser 95.2 0.0039 8.5E-08 56.3 -0.9 70 376-447 121-190 (221)
75 PF13504 LRR_7: Leucine rich r 94.3 0.029 6.2E-07 29.0 1.4 16 179-194 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 27.9 1.4 16 134-149 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 92.0 0.0038 8.3E-08 57.4 -6.8 81 132-212 41-122 (326)
78 smart00369 LRR_TYP Leucine-ric 90.8 0.25 5.4E-06 28.7 2.4 20 177-196 1-20 (26)
79 smart00370 LRR Leucine-rich re 90.8 0.25 5.4E-06 28.7 2.4 20 177-196 1-20 (26)
80 KOG0473 Leucine-rich repeat pr 88.0 0.015 3.2E-07 53.7 -6.4 87 151-239 37-124 (326)
81 smart00367 LRR_CC Leucine-rich 86.5 0.33 7.1E-06 28.2 0.8 16 640-655 1-16 (26)
82 smart00369 LRR_TYP Leucine-ric 84.7 0.71 1.5E-05 26.7 1.7 19 133-151 2-20 (26)
83 smart00370 LRR Leucine-rich re 84.7 0.71 1.5E-05 26.7 1.7 19 133-151 2-20 (26)
84 smart00364 LRR_BAC Leucine-ric 74.5 1.9 4.2E-05 24.9 1.2 18 178-195 2-19 (26)
85 PF13516 LRR_6: Leucine Rich r 70.3 0.97 2.1E-05 25.6 -0.7 11 157-167 3-13 (24)
86 smart00365 LRR_SD22 Leucine-ri 66.4 5.1 0.00011 23.3 1.8 15 178-192 2-16 (26)
87 KOG4308 LRR-containing protein 60.7 0.34 7.5E-06 51.8 -6.8 178 88-274 89-303 (478)
88 smart00368 LRR_RI Leucine rich 45.7 15 0.00033 21.6 1.5 14 157-170 3-16 (28)
89 cd04443 DEP_GPR155 DEP (Dishev 34.4 61 0.0013 25.3 3.7 35 2-43 35-69 (83)
90 cd04440 DEP_2_P-Rex DEP (Dishe 31.9 53 0.0011 26.2 3.0 35 2-43 42-76 (93)
91 cd04441 DEP_2_DEP6 DEP (Dishev 25.4 92 0.002 24.4 3.3 35 2-43 37-71 (85)
92 cd04448 DEP_PIKfyve DEP (Dishe 24.2 1E+02 0.0022 23.9 3.3 36 2-44 33-68 (81)
93 cd04438 DEP_dishevelled DEP (D 20.3 1.1E+02 0.0024 23.9 2.9 36 2-43 34-69 (84)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-33 Score=331.15 Aligned_cols=510 Identities=18% Similarity=0.131 Sum_probs=301.3
Q ss_pred CCCCEEEecCCCCccC-CC-CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCcccCCCCCCcEEE
Q 005639 86 KNCPTIFLHDCKHWEV-PE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTLC 162 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~ 162 (686)
.+++.|+++++.+... +. ...+++|++|++++|.+.+.+|..+|.++++||+|++++|.+.. +|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4577777777776433 22 22777888888888877777777777778888888888877653 442 4577778888
Q ss_pred ccCCCCCC--chhhcCCCCCcEEEccCCCCc-cccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 163 LDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 163 l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 87777764 667777778888888777665 67777777777888877777644556655 777777777777777655
Q ss_pred cccccccccccccchhhhccCCCCcEEEEEecCCc-ccCcccc-ccCccEEEEEEcCc----cCCCCccccceEEEEecC
Q 005639 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLF-SKKLERYKIFIGDE----WDWSGNYKNKRVLKLKLY 313 (686)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~~~~----~~~~~~~~~l~~l~l~~~ 313 (686)
. ..+..++.+++|++|++++|... .+|..+. .++|+.|.+..+.. +.......+++.|++..+
T Consensus 226 ~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 226 G-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred C-----------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 2 23355667777777777776643 3444332 36666666654332 122233456666666543
Q ss_pred CC--chHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCc
Q 005639 314 TS--NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (686)
Q Consensus 314 ~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (686)
.- ........+++|+.|++.++......+. .+..+++|+.|++.+|.....+| .....+++|+.|+++++.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIP-----KNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCC-----hHHhCCCCCcEEECCCCe
Confidence 21 1111223456677777766544333322 24567777777777665322221 123345667777776543
Q ss_pred chhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeeccc
Q 005639 392 HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQL 471 (686)
Q Consensus 392 ~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 471 (686)
--..+ +.....+++|+.|++.++.-...+|. .+..+++|+.|++.+|.-...++. ....+++|
T Consensus 368 l~~~~---p~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~------------~~~~l~~L 430 (968)
T PLN00113 368 LTGEI---PEGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPS------------EFTKLPLV 430 (968)
T ss_pred eEeeC---ChhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECCh------------hHhcCCCC
Confidence 11111 11122345666666666543333333 445566666666666543322222 22345555
Q ss_pred ceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCc
Q 005639 472 HSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQL 551 (686)
Q Consensus 472 ~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~ 551 (686)
+.|+++++.--..++.. ....+.|+.+....- ... ..++.....++|+.|++++|.+.......+
T Consensus 431 ~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n---~~~--------~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 431 YFLDISNNNLQGRINSR----KWDMPSLQMLSLARN---KFF--------GGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred CEEECcCCcccCccChh----hccCCCCcEEECcCc---eee--------eecCcccccccceEEECcCCccCCccChhh
Confidence 55555543311111100 001112222211100 000 011111235789999999997765444444
Q ss_pred cccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCee
Q 005639 552 AAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTF 631 (686)
Q Consensus 552 ~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 631 (686)
. .+++|+.|++++| ++....|..+ .++++|++|+|++|. ++... +.....+++|+.|++++|.-...+
T Consensus 496 ~--~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~-------p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 496 G--SLSELMQLKLSEN-KLSGEIPDEL-SSCKKLVSLDLSHNQ-LSGQI-------PASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred h--hhhccCEEECcCC-cceeeCChHH-cCccCCCEEECCCCc-ccccC-------ChhHhCcccCCEEECCCCcccccC
Confidence 4 6889999999996 5555445444 678999999999985 43321 112446789999999998876677
Q ss_pred ecCCCcCCCCCccEEEEecCCCceecccccc
Q 005639 632 YPGTHTSKWPMLKKLEVYGCDKVKIFTSRFL 662 (686)
Q Consensus 632 ~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~ 662 (686)
|.... .+++|++|++++|+-...+|..+.
T Consensus 564 p~~l~--~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 564 PKNLG--NVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred ChhHh--cCcccCEEeccCCcceeeCCCcch
Confidence 76544 348999999999987778886543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-32 Score=320.91 Aligned_cols=446 Identities=24% Similarity=0.272 Sum_probs=280.2
Q ss_pred HHHHHhhccccccCCCCCcEEechhhHHHHHHHhhccceeEEecCcccCcCch---------hhhcCCCCEEEecCCCCc
Q 005639 29 LVHKLKDYCLLLDGPTEDWIRMHDLVREVAISIASRDRHVFMLRNDIQIEWPV---------ADMLKNCPTIFLHDCKHW 99 (686)
Q Consensus 29 ~i~~L~~~sl~~~~~~~~~~~mHdli~dla~~i~~~e~~~~~~~~~~~~~~~~---------~~~~~~lr~l~l~~~~~~ 99 (686)
.++.|+++||++.. .+.++|||++|+||+.+++++.. ..+.....|.. ....++++.+++..+.+.
T Consensus 471 ~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 471 GLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred ChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 48889999999876 46799999999999999987641 01111111111 112234455544433221
Q ss_pred cCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc-------cCCcccCCC-CCCcEEEccCCCCCC-
Q 005639 100 EVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-------SLPSLFHLP-LNLQTLCLDRCALGD- 170 (686)
Q Consensus 100 ~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-------~lp~~i~~l-~~L~~L~l~~~~l~~- 170 (686)
. + .+....|.+|++|++|.+.++... .+|..+..+ .+||+|.+.+++++.
T Consensus 546 ~------------~---------~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 546 E------------L---------HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM 604 (1153)
T ss_pred e------------e---------eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC
Confidence 1 1 233445677777777777654321 256666555 357777777777766
Q ss_pred chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccccccccc
Q 005639 171 IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRS 250 (686)
Q Consensus 171 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 250 (686)
|..+ .+.+|++|+++++.+..+|.++..+++|+.|+++++..++.+|. ++.+++|++|++.+|...
T Consensus 605 P~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L----------- 670 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL----------- 670 (1153)
T ss_pred CCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------
Confidence 5444 56777777777777777777777777777777777766777775 677777777777776543
Q ss_pred ccchhhhccCCCCcEEEEEecC-CcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccce
Q 005639 251 NASLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEE 329 (686)
Q Consensus 251 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~ 329 (686)
...+..++.+++|+.|++++|. +..+|..+..++|+.|
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L----------------------------------------- 709 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL----------------------------------------- 709 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE-----------------------------------------
Confidence 1233566777777777777654 4555544333333333
Q ss_pred eecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhh----cCCCCccc
Q 005639 330 LYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC----LGQLRAES 405 (686)
Q Consensus 330 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~ 405 (686)
.+.+|......+. ..++|++|++.++. ++.+|. ...+++|++|.+.++....-+. ........
T Consensus 710 -~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP~------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 710 -NLSGCSRLKSFPD-----ISTNISWLDLDETA-IEEFPS------NLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred -eCCCCCCcccccc-----ccCCcCeeecCCCc-cccccc------cccccccccccccccchhhccccccccchhhhhc
Confidence 3333322221111 12345555554443 222221 1124455555554433211100 00011123
Q ss_pred cCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCcccccccc
Q 005639 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (686)
Q Consensus 406 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l 485 (686)
+++|+.|++++|+.+..+|. .+.++++|+.|++.+|..++.+|. ...+++|+.|++++|.++..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccc
Confidence 57899999999999998876 578999999999999999998886 125899999999999988775
Q ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEEEEe
Q 005639 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (686)
Q Consensus 486 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (686)
+. ..++|+.|++.+++++.++... . .+++|+.|+++
T Consensus 842 p~-----------------------------------------~~~nL~~L~Ls~n~i~~iP~si-~--~l~~L~~L~L~ 877 (1153)
T PLN03210 842 PD-----------------------------------------ISTNISDLNLSRTGIEEVPWWI-E--KFSNLSFLDMN 877 (1153)
T ss_pred cc-----------------------------------------cccccCEeECCCCCCccChHHH-h--cCCCCCEEECC
Confidence 43 2467999999999888776532 2 68999999999
Q ss_pred cCCCCccccChhHHhhcccccEEEEecccccceeeccccc-----ccccccccccccceeecccCCCcC
Q 005639 566 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESG-----EEATTTFVFPKVTFLKLWNLSELK 629 (686)
Q Consensus 566 ~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~-----~~~~~~~~~~~L~~L~i~~c~~L~ 629 (686)
+|++|+.+++ . ...+++|+.|++++|++|+.+...... ........+|+...+.+.+|.+|.
T Consensus 878 ~C~~L~~l~~-~-~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 878 GCNNLQRVSL-N-ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCCcCccCc-c-cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999999843 3 357899999999999999876321100 000111235555666777777765
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-33 Score=312.07 Aligned_cols=235 Identities=24% Similarity=0.336 Sum_probs=172.5
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCC---CCCcEEechhhHHHHHHHhh-----ccceeEEecC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP---TEDWIRMHDLVREVAISIAS-----RDRHVFMLRN 73 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~---~~~~~~mHdli~dla~~i~~-----~e~~~~~~~~ 73 (686)
+||.+|||||||++.+..+.+++.+++||.+||++|+++..+ ...+|+|||+|||||.++|+ +|..++ ..+
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~ 510 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV-SDG 510 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE-ECC
Confidence 689999999999886666778999999999999999999875 44789999999999999999 566333 222
Q ss_pred cccCcCchhhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCcc-CCccChhhhhCCCCCcEEEecCC-CCccCCcc
Q 005639 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNM-QFLSLPSL 151 (686)
Q Consensus 74 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~-~~~~~~~~f~~l~~Lr~L~L~~~-~~~~lp~~ 151 (686)
.+....+....+..+|++++.++++..++....+++|++|.+.+|.. ...++..+|..++.||||||++| .+.++|++
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 34444556667789999999999999888888888999999999873 44788888999999999999986 56778888
Q ss_pred cCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEE
Q 005639 152 FHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (686)
Q Consensus 152 i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 231 (686)
|+.|.|||||+++++.+ +.+|.++++|++|.+|++..+..+..+|. ++..|++|++|
T Consensus 591 I~~Li~LryL~L~~t~I----------------------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L 647 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGI----------------------SHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVL 647 (889)
T ss_pred HhhhhhhhcccccCCCc----------------------cccchHHHHHHhhheeccccccccccccc-hhhhcccccEE
Confidence 87777777777777664 45555555555555555555544444432 24446666666
Q ss_pred EcCCCccccccccccccccccchhhhccCCCCcEEEEE
Q 005639 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (686)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (686)
.+..... ..+...+.++..+.+|+.+.+.
T Consensus 648 ~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 648 RLPRSAL---------SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred Eeecccc---------ccchhhHHhhhcccchhhheee
Confidence 5544321 1223445566666666666554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.5e-31 Score=309.71 Aligned_cols=486 Identities=18% Similarity=0.144 Sum_probs=347.8
Q ss_pred hhcCCCCEEEecCCCCc-cCCCCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc-cCCcccCCCCCC
Q 005639 83 DMLKNCPTIFLHDCKHW-EVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNL 158 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L 158 (686)
...+.++.|++++|++. .+|... .+++||+|++++|.+.+.+|. ..+++|++|++++|.+. .+|..++.+++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 34688999999999885 676543 889999999999998877775 45889999999999886 588889999999
Q ss_pred cEEEccCCCCCC--chhhcCCCCCcEEEccCCCCc-cccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCC
Q 005639 159 QTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (686)
Q Consensus 159 ~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (686)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 999999999875 889999999999999999877 68999999999999999998855577776 89999999999999
Q ss_pred CccccccccccccccccchhhhccCCCCcEEEEEecCCc-ccCcccc-ccCccEEEEEEcCc----cCCCCccccceEEE
Q 005639 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLF-SKKLERYKIFIGDE----WDWSGNYKNKRVLK 309 (686)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~~~~----~~~~~~~~~l~~l~ 309 (686)
|.+.. ..+..++++++|+.|++++|.+. .+|..+. ..+|+.|++..+.. +.+....++++.|+
T Consensus 246 n~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 246 NNLTG-----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred ceecc-----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 87652 34477889999999999988754 4555443 47888888865542 23445567888888
Q ss_pred EecCCCc--hHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhc
Q 005639 310 LKLYTSN--VDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVL 387 (686)
Q Consensus 310 l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l 387 (686)
+..+.-. .......+++|+.|++.++......+. .++.+++|+.|+++++.....++. ....+++|+.|.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L~l 387 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKLIL 387 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEEEC
Confidence 8764321 122344578899999988765444433 356789999999998864322221 2334678888888
Q ss_pred cCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCccee
Q 005639 388 HNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIE 467 (686)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 467 (686)
.++.-...+ +...+.+++|+.|++.+|.--..+|. .+..+++|+.|+++++.-...++. ....
T Consensus 388 ~~n~l~~~~---p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~ 450 (968)
T PLN00113 388 FSNSLEGEI---PKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRINS------------RKWD 450 (968)
T ss_pred cCCEecccC---CHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccCh------------hhcc
Confidence 776421111 12235678999999998764444443 567889999999988653333322 2346
Q ss_pred ecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceec
Q 005639 468 FSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIW 547 (686)
Q Consensus 468 ~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~ 547 (686)
+++|+.|++++|.-...++... ....|+.+..... .+.+ ........+++|+.|++++|.+....
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~-----~~~~L~~L~ls~n---~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF-----GSKRLENLDLSRN---QFSG-------AVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred CCCCcEEECcCceeeeecCccc-----ccccceEEECcCC---ccCC-------ccChhhhhhhccCEEECcCCcceeeC
Confidence 7889999998886555444321 1123333322110 1111 11122346789999999999777544
Q ss_pred ccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCC
Q 005639 548 CNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (686)
Q Consensus 548 ~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 627 (686)
..... .+++|++|++++| .+....|.. +..+++|+.|++++|.-...++ .....+++|+.|++++|+-
T Consensus 516 p~~~~--~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 516 PDELS--SCKKLVSLDLSHN-QLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIP--------KNLGNVESLVQVNISHNHL 583 (968)
T ss_pred ChHHc--CccCCCEEECCCC-cccccCChh-HhCcccCCEEECCCCcccccCC--------hhHhcCcccCEEeccCCcc
Confidence 44444 6899999999997 566554544 4789999999999996443442 2345688999999999987
Q ss_pred cCeeecC
Q 005639 628 LKTFYPG 634 (686)
Q Consensus 628 L~~l~~~ 634 (686)
...+|..
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 7777754
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.3e-22 Score=237.16 Aligned_cols=345 Identities=18% Similarity=0.271 Sum_probs=262.7
Q ss_pred hhcCCCCEEEecCCCC-------ccCCCCC-C-CCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccC
Q 005639 83 DMLKNCPTIFLHDCKH-------WEVPEGL-E-YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH 153 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~-------~~l~~~~-~-~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~ 153 (686)
...++++.|.+..+.. ..+|... . ..+||.|.+.++... .+|..+ ...+|+.|++.++.+..+|..++
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccc
Confidence 3467788888865432 1244433 2 357999999988665 677653 47899999999999999999999
Q ss_pred CCCCCcEEEccCCC-CCCchhhcCCCCCcEEEccCC-CCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEE
Q 005639 154 LPLNLQTLCLDRCA-LGDIAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (686)
Q Consensus 154 ~l~~L~~L~l~~~~-l~~~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 231 (686)
.+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 555667999999999999998 68899999999999999999999999999986 3 89999999
Q ss_pred EcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEe
Q 005639 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLK 311 (686)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~ 311 (686)
++++|......+ ....+|+.|+++++.+..+|..+..++|..|.+.......... .
T Consensus 710 ~Lsgc~~L~~~p--------------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~---~------- 765 (1153)
T PLN03210 710 NLSGCSRLKSFP--------------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE---R------- 765 (1153)
T ss_pred eCCCCCCccccc--------------cccCCcCeeecCCCccccccccccccccccccccccchhhccc---c-------
Confidence 999986442111 1246789999999999899988777777777664221100000 0
Q ss_pred cCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCc
Q 005639 312 LYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (686)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 391 (686)
...+.......+++|+.|++.++.....++. .++++++|+.|+|++|..++.+|.. ..+++|+.|.+++|.
T Consensus 766 -~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 766 -VQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCS 836 (1153)
T ss_pred -ccccchhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCC
Confidence 0001111222357889999988876666554 3578999999999999888877543 257899999999998
Q ss_pred chhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeeccc
Q 005639 392 HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQL 471 (686)
Q Consensus 392 ~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 471 (686)
.++.++ ...++|+.|++.+ ..++.+|. ++..+++|+.|++.+|++++.++. ....+++|
T Consensus 837 ~L~~~p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~------------~~~~L~~L 895 (1153)
T PLN03210 837 RLRTFP------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL------------NISKLKHL 895 (1153)
T ss_pred cccccc------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc------------ccccccCC
Confidence 877652 2346899999988 57788875 678899999999999999998876 34568899
Q ss_pred ceEecCccccccccc
Q 005639 472 HSLTLKFLPQLTSFY 486 (686)
Q Consensus 472 ~~L~L~~c~~L~~l~ 486 (686)
+.+++++|++|+.++
T Consensus 896 ~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 896 ETVDFSDCGALTEAS 910 (1153)
T ss_pred CeeecCCCccccccc
Confidence 999999999998754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.4e-23 Score=206.25 Aligned_cols=391 Identities=18% Similarity=0.235 Sum_probs=258.1
Q ss_pred hhhcCCCCEEEecCCCCccCCC----CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCC
Q 005639 82 ADMLKNCPTIFLHDCKHWEVPE----GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLN 157 (686)
Q Consensus 82 ~~~~~~lr~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 157 (686)
....-..+-++.+...++.+.. ..-.+..++|++++|.+. .+....|.++++|+.+++..|.++.+|...+..-|
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 3455667778888877766522 224456788999999877 66666789999999999999999999987778889
Q ss_pred CcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 158 LQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 158 L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
|+.|+|.+|.|.+ -+.+..++.|+.||++.|.|.++|.. +..-.++++|++++|. ++.+..+.|..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 9999999999988 57788999999999999999988764 6666789999999987 888887778888888888888
Q ss_pred CCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCC
Q 005639 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (686)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (686)
.|.++. ..+..+++|++|+.|++..|.+...
T Consensus 206 rNritt-----------Lp~r~Fk~L~~L~~LdLnrN~iriv-------------------------------------- 236 (873)
T KOG4194|consen 206 RNRITT-----------LPQRSFKRLPKLESLDLNRNRIRIV-------------------------------------- 236 (873)
T ss_pred cCcccc-----------cCHHHhhhcchhhhhhccccceeee--------------------------------------
Confidence 887662 2346677777777777765543211
Q ss_pred CchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchh
Q 005639 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLE 394 (686)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 394 (686)
..+.+.++++|+.|.+..+. +..+.++.++ .+.+++
T Consensus 237 ----------------------------e~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy----~l~kme----------- 272 (873)
T KOG4194|consen 237 ----------------------------EGLTFQGLPSLQNLKLQRND-ISKLDDGAFY----GLEKME----------- 272 (873)
T ss_pred ----------------------------hhhhhcCchhhhhhhhhhcC-cccccCccee----eecccc-----------
Confidence 11234566777777766653 2222222221 133333
Q ss_pred hhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceE
Q 005639 395 KICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSL 474 (686)
Q Consensus 395 ~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 474 (686)
+|++.. +++..+- .+|+-++.+|+.|+++. +.++.+-. ......++|++|
T Consensus 273 ----------------~l~L~~-N~l~~vn-~g~lfgLt~L~~L~lS~-NaI~rih~-----------d~WsftqkL~~L 322 (873)
T KOG4194|consen 273 ----------------HLNLET-NRLQAVN-EGWLFGLTSLEQLDLSY-NAIQRIHI-----------DSWSFTQKLKEL 322 (873)
T ss_pred ----------------eeeccc-chhhhhh-cccccccchhhhhccch-hhhheeec-----------chhhhcccceeE
Confidence 333333 2333331 12344455555555544 22222221 012234555555
Q ss_pred ecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCcccc
Q 005639 475 TLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAV 554 (686)
Q Consensus 475 ~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~ 554 (686)
+|+. ..++.++++ .+..+..|++|.+++|.+.++-++.+.
T Consensus 323 dLs~-N~i~~l~~~-------------------------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~-- 362 (873)
T KOG4194|consen 323 DLSS-NRITRLDEG-------------------------------------SFRVLSQLEELNLSHNSIDHLAEGAFV-- 362 (873)
T ss_pred eccc-cccccCChh-------------------------------------HHHHHHHhhhhcccccchHHHHhhHHH--
Confidence 5553 222332221 123567899999999999888777666
Q ss_pred ccCCccEEEEecCCCCcccc--ChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeee
Q 005639 555 YSQNLTRLIVHGCEKLKYLF--PSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFY 632 (686)
Q Consensus 555 ~l~~L~~L~l~~C~~L~~l~--p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 632 (686)
.+.+|++|++++ +.+.-.. .......+++|+.|++.+. +|++++. .+...+++|++|++.+.+ +.++.
T Consensus 363 ~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-------rAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 363 GLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-------RAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred HhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecch-------hhhccCcccceecCCCCc-ceeec
Confidence 789999999987 3443221 1122356899999999998 7888842 345578899999998854 66665
Q ss_pred cCCCcCCCCCccEEEEe
Q 005639 633 PGTHTSKWPMLKKLEVY 649 (686)
Q Consensus 633 ~~~~~~~~~~L~~L~I~ 649 (686)
...+.. ..|++|.+.
T Consensus 433 ~nAFe~--m~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNAFEP--MELKELVMN 447 (873)
T ss_pred cccccc--chhhhhhhc
Confidence 544332 477777764
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=2.7e-25 Score=213.22 Aligned_cols=444 Identities=22% Similarity=0.266 Sum_probs=241.5
Q ss_pred hhcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
.....+..+.+++|+..++|+.+ ....+..+++++|+.+ .+|..+ ..+..|+.|+.+.+.+.++|++|+.+..|..|
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 34556666777777776666544 6666777777777665 566654 45667777777777777777777777777777
Q ss_pred EccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccc
Q 005639 162 CLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKW 240 (686)
Q Consensus 162 ~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 240 (686)
+..+|++.+ |++++++.+|..|++.+|+++++|...-+++.|++||...|. ++.+|++ ++.|.+|..|++..|.+..
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRF 220 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhccccc
Confidence 777777777 777777777777777777777777765567777777777665 7777776 7777777777777666542
Q ss_pred ccc--ccc------cc--ccccchh-hhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEE
Q 005639 241 EFE--GLN------VG--RSNASLQ-ELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLK 309 (686)
Q Consensus 241 ~~~--~~~------~~--~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~ 309 (686)
.+. +.. .+ ...-.++ -+++++++..||++.|+++.+|..++.
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--------------------------- 273 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--------------------------- 273 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH---------------------------
Confidence 211 000 00 0000111 123445555555555555555544432
Q ss_pred EecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhc--
Q 005639 310 LKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVL-- 387 (686)
Q Consensus 310 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l-- 387 (686)
+++|++|++++... ...+. .++++ .|+.|.+.+++ ++.+-. + ....+.-.-|++|.=
T Consensus 274 --------------LrsL~rLDlSNN~i-s~Lp~--sLgnl-hL~~L~leGNP-lrTiRr-~-ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 274 --------------LRSLERLDLSNNDI-SSLPY--SLGNL-HLKFLALEGNP-LRTIRR-E-IISKGTQEVLKYLRSKI 332 (565)
T ss_pred --------------hhhhhhhcccCCcc-ccCCc--ccccc-eeeehhhcCCc-hHHHHH-H-HHcccHHHHHHHHHHhh
Confidence 34555555555432 22221 34566 67777777665 222100 0 000111112222221
Q ss_pred --cCCcchhhhh--------cCCCCccccCCccEEEEecCCCCccccchhhhcCC--CCCcEEEEeeccCcccccccccc
Q 005639 388 --HNLIHLEKIC--------LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGL--PQLQTLNVINCKNMKEIFTVGRE 455 (686)
Q Consensus 388 --~~~~~l~~~~--------~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~ 455 (686)
.+...-+.-. +.......+-..+.|.+++ .+++.+|... ++.- .-...++++. +++.++|.
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEV-fea~~~~~Vt~Vnfsk-NqL~elPk---- 405 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEV-FEAAKSEIVTSVNFSK-NQLCELPK---- 405 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHH-HHHhhhcceEEEeccc-chHhhhhh----
Confidence 0010000000 0001122344678888887 6778887632 2211 1234556665 45666665
Q ss_pred CCcccCCCcceeecccceE----ecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCC
Q 005639 456 NDVDCHEVDKIEFSQLHSL----TLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFP 531 (686)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L----~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (686)
.++.++++ .+++ +..+++. ..+..++
T Consensus 406 -----------~L~~lkelvT~l~lsn--n~isfv~-------------------------------------~~l~~l~ 435 (565)
T KOG0472|consen 406 -----------RLVELKELVTDLVLSN--NKISFVP-------------------------------------LELSQLQ 435 (565)
T ss_pred -----------hhHHHHHHHHHHHhhc--Cccccch-------------------------------------HHHHhhh
Confidence 12222211 1111 1111110 0123567
Q ss_pred cccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeeccccccccccc
Q 005639 532 NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTT 611 (686)
Q Consensus 532 ~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~ 611 (686)
+|..|+++++-+-.+|.+.. .+-.|+.|+|+. ++.+.+ | .+...+..||.+-+++. ++.++. ..++
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~---~lv~Lq~LnlS~-NrFr~l-P-~~~y~lq~lEtllas~n-qi~~vd-------~~~l 501 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMG---SLVRLQTLNLSF-NRFRML-P-ECLYELQTLETLLASNN-QIGSVD-------PSGL 501 (565)
T ss_pred cceeeecccchhhhcchhhh---hhhhhheecccc-cccccc-h-HHHhhHHHHHHHHhccc-cccccC-------hHHh
Confidence 77777777776666665544 356677777777 466666 3 23334445555555544 555552 1235
Q ss_pred ccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCC
Q 005639 612 FVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 612 ~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
....+|+.|++.+ ..++.+|.+... +++|++|+++|-|
T Consensus 502 ~nm~nL~tLDL~n-Ndlq~IPp~Lgn--mtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 KNMRNLTTLDLQN-NDLQQIPPILGN--MTNLRHLELDGNP 539 (565)
T ss_pred hhhhhcceeccCC-CchhhCChhhcc--ccceeEEEecCCc
Confidence 5667777777776 457777776554 3777777777754
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-23 Score=219.93 Aligned_cols=142 Identities=25% Similarity=0.315 Sum_probs=79.5
Q ss_pred EecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC
Q 005639 92 FLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD 170 (686)
Q Consensus 92 ~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~ 170 (686)
+++.+..+.+|... .-..+..|++..|... ..|-.+.++.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 33444444444322 2222555555554433 223333344444666666666666666666666666666666666666
Q ss_pred -chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCC
Q 005639 171 -IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 171 -~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
|.+++++.+|++|.|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+..++|
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 666666666666666666666666666666666666666655 5555553 455555555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.7e-23 Score=209.69 Aligned_cols=175 Identities=23% Similarity=0.375 Sum_probs=116.5
Q ss_pred hhcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc--CCcccCCCCCCc
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS--LPSLFHLPLNLQ 159 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~ 159 (686)
.....++.|.+...++..+|... .+.+|+.|.+.+|++. .+... ++.++.||.+++..|++.. +|..|.++..|.
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccce
Confidence 34556666666666666666544 6667777777776654 33333 3566777777777776643 777777777777
Q ss_pred EEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 160 TLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 160 ~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
+|||++|.+++ |..+...+++-+|++++|+|..+|.. +.+|+.|-+||+++|. +..+|++ +.+|.+||+|.+++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCCh
Confidence 77777777777 77777777777777777777777766 5677777777777766 7777776 6777777777777765
Q ss_pred cccccccccccccccchhhhccCCCCcEEEEEecC
Q 005639 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (686)
+. ...+..+..|+.|+.|+++++.
T Consensus 185 L~-----------hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 185 LN-----------HFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred hh-----------HHHHhcCccchhhhhhhccccc
Confidence 43 2334555555566666666544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=9.8e-23 Score=205.70 Aligned_cols=150 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred cCCCCEEEecCCCC--ccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 85 LKNCPTIFLHDCKH--WEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 85 ~~~lr~l~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
++-+|-+++++|++ ..+|..+ .|+.++.|.+....+. .+|... +.+.+|..|.+.+|++.++-..+..|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 34455555555555 2344433 4445555554444333 344432 44444555555555544444444445555555
Q ss_pred EccCCCCCC---chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 162 CLDRCALGD---IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 162 ~l~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
.++.|+++. |+.|.+|..|.+||++.|++++.|..+.+-+++-.|++++|. +..+|...+-+|+.|-.|++++|.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch
Confidence 555554443 445555555555555555555555555555555555555544 455555444444444444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=8e-24 Score=203.16 Aligned_cols=482 Identities=20% Similarity=0.191 Sum_probs=289.3
Q ss_pred CCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEcc
Q 005639 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 164 (686)
..+..+.+++|+++.+.+.. ++..+.+|.+.+|... .+|+++ ..+..+..|+.+++.+..+|+.++.+..|+.|+.+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 44566788888887766544 8888999999998877 677665 77888999999999999999999999999999999
Q ss_pred CCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 165 RCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 165 ~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
.+.+.. +++++.+..|..|+..+|++.++|.+++++.+|..+++.++. ++.+|+..+. ++.|++|+...|-.
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L----- 195 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLL----- 195 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhh-----
Confidence 999888 899999999999999999999999999999999999999977 8888887554 99999998766543
Q ss_pred cccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHH
Q 005639 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQ 323 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 323 (686)
+..+.+++.|.+|..|++..|++..+|..-....|.++.+..+. ..-++......
T Consensus 196 -------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~------------------i~~lpae~~~~ 250 (565)
T KOG0472|consen 196 -------ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ------------------IEMLPAEHLKH 250 (565)
T ss_pred -------hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH------------------HHhhHHHHhcc
Confidence 34568899999999999999988888744222344443331000 01112334445
Q ss_pred hhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCc
Q 005639 324 LKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRA 403 (686)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 403 (686)
++++..|++.+... ++.+.. +.-+.+|.+|+++++. +..+|. +.+.+ .|+.|.+.+.| ++.+.......
T Consensus 251 L~~l~vLDLRdNkl-ke~Pde--~clLrsL~rLDlSNN~-is~Lp~-----sLgnl-hL~~L~leGNP-lrTiRr~ii~~ 319 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKL-KEVPDE--ICLLRSLERLDLSNND-ISSLPY-----SLGNL-HLKFLALEGNP-LRTIRREIISK 319 (565)
T ss_pred cccceeeecccccc-ccCchH--HHHhhhhhhhcccCCc-cccCCc-----ccccc-eeeehhhcCCc-hHHHHHHHHcc
Confidence 56677777766543 344432 3447788888888765 333321 34445 67777776654 33222111111
Q ss_pred cccCCccEEEE-ecCCCCcc----------ccc--hhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecc
Q 005639 404 ESFYKLKIIKV-RNCDKLKN----------IFS--FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQ 470 (686)
Q Consensus 404 ~~~~~L~~L~l-~~C~~l~~----------l~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 470 (686)
+.-.-|++|.= ..|..+.. .++ +.......+.+.|++++ .+++.+|.-..+. ..-.-
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea---------~~~~~ 389 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEA---------AKSEI 389 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHH---------hhhcc
Confidence 11111221110 01111110 011 11223456778888876 5566666510000 00000
Q ss_pred cceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccC
Q 005639 471 LHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQ 550 (686)
Q Consensus 471 L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~ 550 (686)
....+++. ..+..+|.. +.....+.+.-+.+++..++....
T Consensus 390 Vt~Vnfsk-NqL~elPk~--------------------------------------L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 390 VTSVNFSK-NQLCELPKR--------------------------------------LVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred eEEEeccc-chHhhhhhh--------------------------------------hHHHHHHHHHHHhhcCccccchHH
Confidence 12223322 111111110 001112222222233333322333
Q ss_pred ccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCe
Q 005639 551 LAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKT 630 (686)
Q Consensus 551 ~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 630 (686)
.. .+++|..|++++ +-|.++ |.++ +.+..|+.|+|+.. ....++. ...-+...+..+..-.++..
T Consensus 431 l~--~l~kLt~L~L~N-N~Ln~L-P~e~-~~lv~Lq~LnlS~N-rFr~lP~---------~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 431 LS--QLQKLTFLDLSN-NLLNDL-PEEM-GSLVRLQTLNLSFN-RFRMLPE---------CLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HH--hhhcceeeeccc-chhhhc-chhh-hhhhhhheeccccc-ccccchH---------HHhhHHHHHHHHhccccccc
Confidence 33 689999999998 577788 6555 57888999999987 3444421 11122223333444456777
Q ss_pred eecCCCcCCCCCccEEEEec------------CCCceeccccccchhcccCCcccccccc
Q 005639 631 FYPGTHTSKWPMLKKLEVYG------------CDKVKIFTSRFLRFQEINEGQFDIPTQQ 678 (686)
Q Consensus 631 l~~~~~~~~~~~L~~L~I~~------------C~~L~~lp~~~~~~~~~~~~~~~~~~~~ 678 (686)
++... ...+..|.+|++.+ |.+|+.+.-.+.++. +-+.++-|..+.
T Consensus 496 vd~~~-l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~ 553 (565)
T KOG0472|consen 496 VDPSG-LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTA 553 (565)
T ss_pred cChHH-hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHHHHhccChH
Confidence 66541 12447777777654 666666666666655 334444444333
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-20 Score=189.82 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=171.9
Q ss_pred hhcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQT 160 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~ 160 (686)
..+.+++.+++..|.++.+|.+. ...+++.|++.+|.+. .+....++.+..||+|||+.|.+.++|. ++..=.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 34555666666666666666655 4444666666666555 4444444556667777777776666553 3444456777
Q ss_pred EEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 161 LCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 161 L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
|+|++|.|+. ...|..+.+|-+|.++.|+++.+|.- +.+|++|+.|++..|. ++.+..-.|.+|++||.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC
Confidence 7777777666 45666666777777777777776654 4447777777776665 444433336666666666666665
Q ss_pred cccccccccccccccchhhhccCCCCcEEEEEecCCcccCccc--cccCccEEEEEEcCccCCCCccccceEEEEecCCC
Q 005639 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (686)
+..... ..+-.+.++++|++..|.+..+...- .+..|+.|+++.+.. .+
T Consensus 257 I~kL~D-----------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI------------------~r 307 (873)
T KOG4194|consen 257 ISKLDD-----------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI------------------QR 307 (873)
T ss_pred cccccC-----------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhh------------------he
Confidence 542111 23334555666666665554443321 124444444433221 11
Q ss_pred chHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhh
Q 005639 316 NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEK 395 (686)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 395 (686)
+...--...++|+.|+++.+....-... .+..+..|++|.++.+. +.++-+. ....+.+|++|++++.. +..
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~--sf~~L~~Le~LnLs~Ns-i~~l~e~----af~~lssL~~LdLr~N~-ls~ 379 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEG--SFRVLSQLEELNLSHNS-IDHLAEG----AFVGLSSLHKLDLRSNE-LSW 379 (873)
T ss_pred eecchhhhcccceeEeccccccccCChh--HHHHHHHhhhhcccccc-hHHHHhh----HHHHhhhhhhhcCcCCe-EEE
Confidence 1000111235566666655443221111 23445666666666554 3322111 22335566666665432 111
Q ss_pred hh-cCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeecc
Q 005639 396 IC-LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (686)
Q Consensus 396 ~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~ 444 (686)
.. ........+++|++|.+.+ ++++.+|. ..+.++++||+|++.++.
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 00 0111223377777888777 67777765 356677788888776643
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-19 Score=192.28 Aligned_cols=397 Identities=21% Similarity=0.224 Sum_probs=183.7
Q ss_pred CcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCC
Q 005639 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDS 188 (686)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~ 188 (686)
|++|++++|.+. .+|..+ ..+.+|+.|+++.|.+.++|.++.++++|++|.|.+|.+.. |.++..+++|++||+++|
T Consensus 47 L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 555555555444 444332 44555666666666665566555566666666666655555 556666666666666666
Q ss_pred CCccccHHHhcCCC-------------------CCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccc
Q 005639 189 NIEQLPEEMAQLTQ-------------------LRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (686)
Q Consensus 189 ~l~~lp~~i~~l~~-------------------L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (686)
.+...|.-+..++. .+++++..+.....++.+ +..+++ .|++.+|.+.
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---------- 191 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---------- 191 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh----------
Confidence 55555544443333 344444444333344443 444544 4777666543
Q ss_pred cccchhhhccCC--------------------CCcEEEEEecCCcccCccccccCccEEEEEEcC---ccCCCCccccce
Q 005639 250 SNASLQELKLLS--------------------HLTTLEIQICDAMILPKGLFSKKLERYKIFIGD---EWDWSGNYKNKR 306 (686)
Q Consensus 250 ~~~~~~~l~~l~--------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~l~ 306 (686)
...+..+. +|+.|+...|.+...-......+|+.+.++... .++|.....++.
T Consensus 192 ----~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 ----VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred ----hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccce
Confidence 11222222 233333333333322222223566666665332 345666666666
Q ss_pred EEEEecCCC--chHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccch
Q 005639 307 VLKLKLYTS--NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLES 384 (686)
Q Consensus 307 ~l~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~ 384 (686)
.+....+.- ++.. .....+|+.|....+. +..++. ...++.+|++|++..+. +..+|+..... .-.+|..
T Consensus 268 ~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~ne-l~yip~--~le~~~sL~tLdL~~N~-L~~lp~~~l~v---~~~~l~~ 339 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLR-ISRITSLVSLSAAYNE-LEYIPP--FLEGLKSLRTLDLQSNN-LPSLPDNFLAV---LNASLNT 339 (1081)
T ss_pred EecccchhHHhhHHH-HhhhhhHHHHHhhhhh-hhhCCC--cccccceeeeeeehhcc-ccccchHHHhh---hhHHHHH
Confidence 665543211 1111 1123445555544332 122222 23558888888887764 44443311100 0001222
Q ss_pred hhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCc
Q 005639 385 LVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVD 464 (686)
Q Consensus 385 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 464 (686)
|..+.. ++.... ......++.|+.|++.+ +.+++- .+..+.++++|+.|++++ +.+.++|.. .
T Consensus 340 ln~s~n-~l~~lp--~~~e~~~~~Lq~Lylan-N~Ltd~-c~p~l~~~~hLKVLhLsy-NrL~~fpas-----------~ 402 (1081)
T KOG0618|consen 340 LNVSSN-KLSTLP--SYEENNHAALQELYLAN-NHLTDS-CFPVLVNFKHLKVLHLSY-NRLNSFPAS-----------K 402 (1081)
T ss_pred Hhhhhc-cccccc--cccchhhHHHHHHHHhc-Cccccc-chhhhccccceeeeeecc-cccccCCHH-----------H
Confidence 222211 111111 12233455566666655 334332 112345566666666665 334445441 1
Q ss_pred ceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccc
Q 005639 465 KIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE 544 (686)
Q Consensus 465 ~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~ 544 (686)
...++.|++|.+++ .+|+.++... .....|+.+.. ....+..|+....++.|+.++++.|+++
T Consensus 403 ~~kle~LeeL~LSG-NkL~~Lp~tv----a~~~~L~tL~a------------hsN~l~~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 403 LRKLEELEELNLSG-NKLTTLPDTV----ANLGRLHTLRA------------HSNQLLSFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HhchHHhHHHhccc-chhhhhhHHH----HhhhhhHHHhh------------cCCceeechhhhhcCcceEEecccchhh
Confidence 23455555566655 3344443211 01111111111 1233444555566777777777777665
Q ss_pred eecccCccccccCCccEEEEecCCC
Q 005639 545 KIWCNQLAAVYSQNLTRLIVHGCEK 569 (686)
Q Consensus 545 ~~~~~~~~~~~l~~L~~L~l~~C~~ 569 (686)
.+...... .-++|++|++++.++
T Consensus 466 ~~~l~~~~--p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 466 EVTLPEAL--PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhC--CCcccceeeccCCcc
Confidence 43222111 115777777777544
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=5.8e-19 Score=150.31 Aligned_cols=167 Identities=26% Similarity=0.363 Sum_probs=137.7
Q ss_pred CccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcC
Q 005639 98 HWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGN 176 (686)
Q Consensus 98 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~ 176 (686)
+.+++..++++++..|.+++|.++ .+|+.+ ..+++|++|++++|+++++|.+|+.++.||.|++.-|++.. |..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 455666667888888888888776 455554 77888999999999999999889999999999998888777 888999
Q ss_pred CCCCcEEEccCCCCc--cccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccch
Q 005639 177 LKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 254 (686)
Q Consensus 177 L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 254 (686)
++.|++||+.+|++. .+|..+..++.|+-|++++|. ++-+|++ ++++++||.|.+..|.+. ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 999999999988776 688888888888889998877 7888887 899999999988887654 356
Q ss_pred hhhccCCCCcEEEEEecCCcccCccc
Q 005639 255 QELKLLSHLTTLEIQICDAMILPKGL 280 (686)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (686)
.+++.+.+|+.|++.+|....+|+.+
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 78888888999999988888888764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8.2e-18 Score=143.36 Aligned_cols=159 Identities=24% Similarity=0.319 Sum_probs=144.2
Q ss_pred CchhhhcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCC
Q 005639 79 WPVADMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLN 157 (686)
Q Consensus 79 ~~~~~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 157 (686)
+++.-....+.++.+++|++..+|+.. .+.+|++|++++|++. ++|..+ +.++.||.|++..|++..+|..|+.++.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCch
Confidence 344445678899999999999998877 9999999999999887 777775 8899999999999999999999999999
Q ss_pred CcEEEccCCCCCC---chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 158 LQTLCLDRCALGD---IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 158 L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
|++||+.+|++.+ |..|..++-|+.|.++.|.++-+|.+++++++|+.|.++.|. +-++|.+ ++.++.|++|++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcc
Confidence 9999999999887 888999999999999999999999999999999999999987 8889998 8999999999999
Q ss_pred CCccccc
Q 005639 235 NTSVKWE 241 (686)
Q Consensus 235 ~~~~~~~ 241 (686)
+|.+...
T Consensus 182 gnrl~vl 188 (264)
T KOG0617|consen 182 GNRLTVL 188 (264)
T ss_pred cceeeec
Confidence 9987643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.6e-13 Score=150.71 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=107.8
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 167 (686)
-..|+++.+.+..+|.... ++|+.|.+.+|++. .+|. ..++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4577888888877776543 47888888888766 4553 257788888888888887753 3578888888888
Q ss_pred CCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccccc
Q 005639 168 LGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (686)
Q Consensus 168 l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (686)
+.. |.. ..+|+.|++++|+++.+|.. .++|++|++++|. +..+|.. . .+|+.|++++|.+...
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~L----- 337 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTSL----- 337 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccccc-----
Confidence 776 432 35677888888888888752 4678888888875 7777652 2 3566777777765410
Q ss_pred ccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
..+ ..+|+.|++++|.+..+|.
T Consensus 338 --------P~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 338 --------PTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred --------ccc--ccccceEecCCCccCCCCC
Confidence 111 1367888888887776664
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=4.1e-15 Score=143.55 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=93.8
Q ss_pred eEEecCcccCcCchhhhcCCCCEEEecCCCCccCCCCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecC-CC
Q 005639 68 VFMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQ 144 (686)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~-~~ 144 (686)
.+..++.++.++|. +.+.....+.+..|.+..+|+.. .+++||.|++++|+++ .+.++.|++++.|-.|-+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCc
Confidence 34444555555543 56667777777777777777544 6777777777777666 55556667777666665555 66
Q ss_pred CccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCC
Q 005639 145 FLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 145 ~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 212 (686)
|+++|+ .|++|..|+.|.+.-|++.- .+.+..|++|..|.+..|.+..++. .+..+..++++.+..+.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 777765 45677777777777666655 4667777777777777777776666 36666677776665544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=1.1e-12 Score=144.17 Aligned_cols=187 Identities=20% Similarity=0.163 Sum_probs=136.6
Q ss_pred eEEecCcccCcCchhhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc
Q 005639 68 VFMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
.+.+....+..+|. .....++.|++.+|++..+|.. .++|++|++++|+++ .+|. ..++|+.|++++|.+..
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhh
Confidence 44555556665554 4567899999999999988864 579999999999887 5664 24689999999999988
Q ss_pred CCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCC
Q 005639 148 LPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (686)
Q Consensus 148 lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~ 226 (686)
+|.. ...|+.|++++|+++. |. .+++|++|++++|+++.+|.. ..+|+.|++++|. +..+|. + ..
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--p~ 342 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--PS 342 (788)
T ss_pred hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--cc
Confidence 8863 3578899999999888 54 357899999999999988753 2457788888876 777775 2 25
Q ss_pred CCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEc
Q 005639 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (686)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (686)
+|+.|++++|.+...+ .+ ..+|+.|++++|.+..+|.. ..+|+.|.+..+
T Consensus 343 ~Lq~LdLS~N~Ls~LP-------------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 343 GLQELSVSDNQLASLP-------------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 392 (788)
T ss_pred ccceEecCCCccCCCC-------------CC--CcccceehhhccccccCccc--ccccceEEecCC
Confidence 7889999988776211 11 24577778888777777653 245666666443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.1e-12 Score=145.24 Aligned_cols=177 Identities=20% Similarity=0.315 Sum_probs=101.8
Q ss_pred hcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
++..++.|++++|++..+|... .++|++|++++|.+. .+|..++ .+|+.|++++|.+..+|..+. .+|++|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 4456677777777666666433 246777777766655 5554432 356677777777666665543 46677777
Q ss_pred cCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 164 DRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 164 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
++|+++. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|.+..
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-- 339 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTS-- 339 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCcccc--
Confidence 7666666 44443 367777777776666665432 356666666665 5566653 2 2466666666665441
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEE
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 290 (686)
.+..+ .++|+.|++++|.+..+|..+ .++|+.|.+
T Consensus 340 ----------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdL 374 (754)
T PRK15370 340 ----------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDV 374 (754)
T ss_pred ----------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEEC
Confidence 11112 146666777666665555432 234444443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1.1e-12 Score=145.32 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=54.0
Q ss_pred CcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCC
Q 005639 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDS 188 (686)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~ 188 (686)
...|.+.++.++ .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 344444444433 334322 2345555555555555554332 355555555555544 33322 24555555555
Q ss_pred CCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcc
Q 005639 189 NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 189 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (686)
++..+|..+. .+|++|++++|. +..+|.. +. ++|+.|++++|.+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcc
Confidence 5555554443 345555555443 4455543 21 3455555555544
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=3.3e-13 Score=151.67 Aligned_cols=306 Identities=22% Similarity=0.274 Sum_probs=177.1
Q ss_pred hcCCCCEEEecCCC--CccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCc
Q 005639 84 MLKNCPTIFLHDCK--HWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQ 159 (686)
Q Consensus 84 ~~~~lr~l~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~ 159 (686)
...+++.|-+..+. +..++. +..++.||+|++++|.-.+.+|..+ +.+-+||+|+++++.+..+|.++++|+.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 34479999999886 555554 3489999999999987777888875 889999999999999999999999999999
Q ss_pred EEEccCCCCCC--chhhcCCCCCcEEEccCCCCccc---cHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 160 TLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQL---PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 160 ~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
||++..+.... +.....|.+||+|.+.......- -..+.++.+|+.+...... . .+-.. +..++.|.++...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQS 698 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhHh
Confidence 99999987433 45556699999999987652221 1223444455544443322 1 11111 3333444322211
Q ss_pred CCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCC
Q 005639 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (686)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (686)
-.. . .......+..++.+.+|+.|.+..+......... .+.
T Consensus 699 l~~-~-------~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~----~~~--------------------------- 739 (889)
T KOG4658|consen 699 LSI-E-------GCSKRTLISSLGSLGNLEELSILDCGISEIVIEW----EES--------------------------- 739 (889)
T ss_pred hhh-c-------ccccceeecccccccCcceEEEEcCCCchhhccc----ccc---------------------------
Confidence 100 0 0011233455666777777777766643322110 000
Q ss_pred CchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEeccccc-----ccccccccchh-hcc
Q 005639 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWV-----RYNAFLLLESL-VLH 388 (686)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~~~~~~L~~L-~l~ 388 (686)
.. ....++++..+.+.++....+..+ ....|+|+.|.+..|..++.+.+..... ....|++++.+ .+.
T Consensus 740 ~~---~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~ 813 (889)
T KOG4658|consen 740 LI---VLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC 813 (889)
T ss_pred cc---hhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeee
Confidence 00 000244555555555555444432 1235788888888877665542211111 12345555555 355
Q ss_pred CCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeec-cCccccc
Q 005639 389 NLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINC-KNMKEIF 450 (686)
Q Consensus 389 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~ 450 (686)
+.+.+..+...+. .++.|+.+.+..||++..+ |.+.++.+.+| +.+..++
T Consensus 814 ~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 814 SLGGLPQLYWLPL---SFLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred cCCCCceeEeccc---CccchhheehhcCcccccC---------ccccccceeccccceeecC
Confidence 5555554433222 2445777777777666554 44555566665 4444444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.2e-13 Score=131.75 Aligned_cols=285 Identities=21% Similarity=0.243 Sum_probs=185.0
Q ss_pred EEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccC-CCC
Q 005639 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR-CAL 168 (686)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~-~~l 168 (686)
++-++-.+..+|.... +....+.+..|.++ .+|+.+|+.+++||.|||++|.|+.+ |++|..++.|-.|-+.+ |+|
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3344445566665442 34667889999887 89999999999999999999999885 78899999888877777 789
Q ss_pred CC-c-hhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccc
Q 005639 169 GD-I-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (686)
Q Consensus 169 ~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (686)
++ | ..|++|..||.|.+.-|++..++.+ +..|++|..|.+.+|. +..++.+.+..+..++++.+..+.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~i------ 201 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFI------ 201 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccc------
Confidence 98 4 6799999999999999999977765 8999999999999977 88888877888999999987666432
Q ss_pred cccccccchhhhccCCCCcE-----------------EEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEE
Q 005639 246 NVGRSNASLQELKLLSHLTT-----------------LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVL 308 (686)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~-----------------L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 308 (686)
...+++.+.. ..+....+...++.-+..++++
T Consensus 202 ----------cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es--------------------- 250 (498)
T KOG4237|consen 202 ----------CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES--------------------- 250 (498)
T ss_pred ----------cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh---------------------
Confidence 1111111110 0000000000000000000000
Q ss_pred EEecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhcc
Q 005639 309 KLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLH 388 (686)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~ 388 (686)
. .+.+ ...+.. ....+..-+..+|+|++|+++++. ++.+-+. .......++.|.+.
T Consensus 251 -----------l---~s~~----~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~----aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 251 -----------L---PSRL----SSEDFP-DSICPAKCFKKLPNLRKLNLSNNK-ITRIEDG----AFEGAAELQELYLT 306 (498)
T ss_pred -----------H---HHhh----ccccCc-CCcChHHHHhhcccceEeccCCCc-cchhhhh----hhcchhhhhhhhcC
Confidence 0 0000 011111 111111235789999999999876 5544221 12345567777776
Q ss_pred CCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeecc
Q 005639 389 NLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (686)
Q Consensus 389 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~ 444 (686)
. .+++.+..+-+ ..+..|+.|++.+ ++++.+.+ ..++.+.+|.+|.+..++
T Consensus 307 ~-N~l~~v~~~~f--~~ls~L~tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 R-NKLEFVSSGMF--QGLSGLKTLSLYD-NQITTVAP-GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred c-chHHHHHHHhh--hccccceeeeecC-CeeEEEec-ccccccceeeeeehccCc
Confidence 5 45665543322 3467889999999 67777755 367788889999886544
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=4.2e-11 Score=107.91 Aligned_cols=132 Identities=23% Similarity=0.261 Sum_probs=53.0
Q ss_pred hhCCCCCcEEEecCCCCccCCcccC-CCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHH-hcCCCCCEE
Q 005639 129 FAGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLF 206 (686)
Q Consensus 129 f~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 206 (686)
+.+...+|.|+|.++.|+.+. .++ .+.+|+.|++++|.|++.+.+..+++|++|++++|++++++..+ ..+++|++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 345556788888888887764 354 57788888888888888777888888888888888888886655 368888888
Q ss_pred eccCCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEe
Q 005639 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (686)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (686)
++++|. +..+.. ..++.+++|+.|++.+|.+. ....+....+..+++|+.||-..
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCEE
Confidence 888876 554433 22677888888888888775 23345566777888888887553
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=3.2e-11 Score=123.88 Aligned_cols=179 Identities=21% Similarity=0.207 Sum_probs=93.4
Q ss_pred CCCCEEEecCCCCc-----cCCCCC-CCCCCcEEEecCCccCC-----ccChhhhhCCCCCcEEEecCCCCcc-CCcccC
Q 005639 86 KNCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSI-----KIPNHVFAGMSNLRGLALSNMQFLS-LPSLFH 153 (686)
Q Consensus 86 ~~lr~l~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~-----~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~i~ 153 (686)
..++.+.+.++.+. .++... ..+.++.+++.++.... ......|..+++|+.|+++++.+.. .+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34666666666651 222222 44556666666654431 0111234556677777777766642 233333
Q ss_pred CC---CCCcEEEccCCCCCC------chhhcCC-CCCcEEEccCCCCc-----cccHHHhcCCCCCEEeccCCCCCcc--
Q 005639 154 LP---LNLQTLCLDRCALGD------IAIIGNL-KKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKV-- 216 (686)
Q Consensus 154 ~l---~~L~~L~l~~~~l~~------~~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~-- 216 (686)
.+ ++|++|++++|++.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|. +..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence 33 337777777776653 2344555 66777777777655 334445566667777776665 331
Q ss_pred ---cCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 217 ---IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 217 ---~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
++.. +..+++|++|++++|.+... ........+..+++|+.|++++|..
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcC
Confidence 2222 34455677777766654310 0011223344556666666665543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=2e-11 Score=125.35 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=90.7
Q ss_pred EEecCCccCCccChhhhhCCCCCcEEEecCCCCc-----cCCcccCCCCCCcEEEccCCCCCC--------chhhcCCCC
Q 005639 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD--------IAIIGNLKK 179 (686)
Q Consensus 113 L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--------~~~i~~L~~ 179 (686)
|++..+.+.+.--...|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. +..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 3444444443333345667777888888887763 245556667778888887776652 245666778
Q ss_pred CcEEEccCCCCc-cccHHHhcCCC---CCEEeccCCCCCcc-----cCcccccCC-CCCcEEEcCCCccccccccccccc
Q 005639 180 LEILSLVDSNIE-QLPEEMAQLTQ---LRLFDLSGCSKLKV-----IPPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGR 249 (686)
Q Consensus 180 L~~L~l~~~~l~-~lp~~i~~l~~---L~~L~l~~~~~l~~-----~p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~ 249 (686)
|++|++++|.+. ..+..+..+.+ |++|++++|. +.. +... +..+ ++|+.|++++|.+....
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~------- 153 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS------- 153 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH-------
Confidence 888888877665 34444555554 8888887765 331 1222 4455 77777777777665211
Q ss_pred cccchhhhccCCCCcEEEEEecC
Q 005639 250 SNASLQELKLLSHLTTLEIQICD 272 (686)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~ 272 (686)
.......+..+++|++|+++++.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCC
Confidence 11223445556667777776554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.2e-12 Score=129.46 Aligned_cols=179 Identities=22% Similarity=0.273 Sum_probs=137.6
Q ss_pred CCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEcc
Q 005639 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 164 (686)
......+++.|++..+|.-+ .+..|..+.+..|.+. .+|..+ .++..|.+|||+.|++..+|..++.|+ |+.|-++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 34455677777777777655 5666777777777665 555554 678888888888888888888877666 7888888
Q ss_pred CCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 165 RCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 165 ~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
+|+++. |+.|+.+..|..||.+.|.+..+|..++.+.+|+.|+++.|. +..+|++ +..| .|..||++.|.+.
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis---- 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS---- 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee----
Confidence 888888 888888888888888888888888888888888888888876 7778887 6655 4778888877765
Q ss_pred cccccccccchhhhccCCCCcEEEEEecCCcccCccccc
Q 005639 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFS 282 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 282 (686)
..+..+.+|++|+.|.+.+|.+..-|..++.
T Consensus 225 --------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 --------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred --------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 3456788888888888888888877777654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=9.3e-11 Score=105.69 Aligned_cols=100 Identities=28% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCc-hhh-cCCCCCcEEEccCCCCcccc--HHHhcCCCCCEEe
Q 005639 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AII-GNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFD 207 (686)
Q Consensus 132 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~-~~i-~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~ 207 (686)
+.+|++|++++|.+++++ .+..+++|++|++++|.|++. +.+ ..+++|++|++++|+|..+- ..+..+++|++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 445555555555555544 344455555555555555552 223 23555555555555444332 1244555555555
Q ss_pred ccCCCCCcccCc---ccccCCCCCcEEEc
Q 005639 208 LSGCSKLKVIPP---NLLSGLSRLEDLYM 233 (686)
Q Consensus 208 l~~~~~l~~~p~---~~i~~L~~L~~L~l 233 (686)
+.+|+ +...+. .++..+++|+.||-
T Consensus 120 L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 55555 333332 13455566666653
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=1.9e-12 Score=126.52 Aligned_cols=301 Identities=19% Similarity=0.152 Sum_probs=169.3
Q ss_pred hccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCcc
Q 005639 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (686)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (686)
..|+.|.+.++....+-.--....++|++++|.+.+|.+++. .....-...+++|+++.+..|.+|+...... -..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKY-LAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHH-HHH
Confidence 356777777776665443333346788888888888886542 2222234457888888888888887754321 134
Q ss_pred ccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccc
Q 005639 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (686)
Q Consensus 405 ~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 484 (686)
.+|+|+.|.+++|+.+++-......+++..++++...+|..++.-... ......+-+.++++.+|..+++
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~----------~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL----------KAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH----------HHhccChHhhccchhhhccccc
Confidence 588999999999988877332234456777777777777765432110 0112333444445555544444
Q ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccc-ccceecccCccccccCCccEEE
Q 005639 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLI 563 (686)
Q Consensus 485 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~-~l~~~~~~~~~~~~l~~L~~L~ 563 (686)
... +........++.+.... ........+..-....++|+.|.+.+| .++..-...... +.+.|+.++
T Consensus 284 ~~~--~~i~~~c~~lq~l~~s~--------~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~ 352 (483)
T KOG4341|consen 284 EDL--WLIACGCHALQVLCYSS--------CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLD 352 (483)
T ss_pred hHH--HHHhhhhhHhhhhcccC--------CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhc
Confidence 210 00000001111111000 000000000001134578888888888 665544333333 667788888
Q ss_pred EecCCCCccccChhHHhhcccccEEEEecccccceeecccccccc--cccccccccceeecccCCCcCeeecCCCcCCCC
Q 005639 564 VHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEA--TTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWP 641 (686)
Q Consensus 564 l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~--~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~ 641 (686)
+.+|.......-.+...+++.|++|.++.|..+++- |... ........|..+++.+||.++.-... +...|+
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~ 426 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICR 426 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCc
Confidence 888765544312234457788888888888766554 1110 11224456788888888877654332 234678
Q ss_pred CccEEEEecCCCcee
Q 005639 642 MLKKLEVYGCDKVKI 656 (686)
Q Consensus 642 ~L~~L~I~~C~~L~~ 656 (686)
.|+.++..+|..+.+
T Consensus 427 ~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 427 NLERIELIDCQDVTK 441 (483)
T ss_pred ccceeeeechhhhhh
Confidence 999999999987764
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.2e-11 Score=125.47 Aligned_cols=184 Identities=22% Similarity=0.316 Sum_probs=154.5
Q ss_pred EEEecCCCCccCCCCC---CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCC
Q 005639 90 TIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 90 ~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 166 (686)
++.+++.+...+|... .+......+++.|.+. ++|..+ ..+..|..+.|+.|.+..+|..++++..|.||+++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 4556666665555332 5555667788888876 777664 6788899999999999999999999999999999999
Q ss_pred CCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccc
Q 005639 167 ALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (686)
Q Consensus 167 ~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (686)
.+.. |..++.|+ |+.|-+++|+++.+|.+|+.+..|.+||.+.|. +..+|.+ ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 9998 88888775 899999999999999999999999999999988 8899998 899999999999888765
Q ss_pred cccccccchhhhccCCCCcEEEEEecCCcccCcccc-ccCccEEEEE
Q 005639 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF-SKKLERYKIF 291 (686)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~ 291 (686)
..++++..|+ |..||++.|++..+|..+. +..|+.|.+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeec
Confidence 4567888665 8999999999999998875 4777777764
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.2e-10 Score=109.02 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=143.4
Q ss_pred hhcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCC---ccChh-------------------hhhCCCCCcEEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSI---KIPNH-------------------VFAGMSNLRGLA 139 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~---~~~~~-------------------~f~~l~~Lr~L~ 139 (686)
...+++..+-++.++-+.+.... .-+.|.++.+.+..... -+|.. .....+.|..+|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 34567777777777665554433 55667777776542210 01110 012346789999
Q ss_pred ecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCc
Q 005639 140 LSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (686)
Q Consensus 140 L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 219 (686)
|++|.|+.+-+++.-++.+|.|+++.|.+.....+..|++|+.||+++|.+.++-..-.++-|.++|.+.+|. ++.+..
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG 369 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG 369 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh
Confidence 9999999999999889999999999999999888999999999999999998887666789999999999987 787776
Q ss_pred ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 220 NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 220 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
+++|-+|..|++.+|.+... ..+..+++++.|+++.+.+|.+..++..
T Consensus 370 --L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 370 --LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred --hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCccccchH
Confidence 89999999999999987622 2356789999999999999987766543
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=1.8e-11 Score=119.74 Aligned_cols=306 Identities=18% Similarity=0.126 Sum_probs=191.7
Q ss_pred cCccEEEEEEcCcc------CCCCccccceEEEEecCCCchHH----HHHHhhccceeecccccCccccccccccccccc
Q 005639 283 KKLERYKIFIGDEW------DWSGNYKNKRVLKLKLYTSNVDE----VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQ 352 (686)
Q Consensus 283 ~~L~~L~l~~~~~~------~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 352 (686)
..|++|.+..+... ......+++.+|.+.++..+.+. +...+++++++.+..|..+++..-.....++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45666666544422 22344566777766666555432 455677788888877777666543333456788
Q ss_pred cceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCC
Q 005639 353 LKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGL 432 (686)
Q Consensus 353 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l 432 (686)
|++|.++.|+.++. + ....-..+...++.+...+|..++.-.. ....++.+-+.++++.+|..+++.........+
T Consensus 218 L~~lNlSwc~qi~~--~-gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--N-GVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHHhhhccCchhhc--C-cchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 88888888876653 1 1111122344466666666654432110 011244566777788888888876543344568
Q ss_pred CCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccc
Q 005639 433 PQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVI 512 (686)
Q Consensus 433 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 512 (686)
..|+.|..++|..+...+. ..-....++|+.|.+..|..++...-.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l----------~aLg~~~~~L~~l~l~~c~~fsd~~ft------------------------ 339 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVL----------WALGQHCHNLQVLELSGCQQFSDRGFT------------------------ 339 (483)
T ss_pred hHhhhhcccCCCCCchHHH----------HHHhcCCCceEEEeccccchhhhhhhh------------------------
Confidence 8899999999888766554 112245689999999999887764321
Q ss_pred cccccccccccccccccCCcccEEeeccc-ccceecccCccccccCCccEEEEecCCCCccccC---hhHHhhcccccEE
Q 005639 513 LEDECDTLMPFFNEKVVFPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFP---SSMIRNFVQLEHL 588 (686)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~-~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p---~~~~~~l~~L~~L 588 (686)
.-..+.+.|+.+.+.+| -++.-....... +++.|++|.++.|..+++... ......+..|+.+
T Consensus 340 ------------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~-~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 340 ------------MLGRNCPHLERLDLEECGLITDGTLASLSR-NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL 406 (483)
T ss_pred ------------hhhcCChhhhhhcccccceehhhhHhhhcc-CCchhccCChhhhhhhhhhhhhhhhhcccccccccee
Confidence 11136789999999999 443322222222 889999999999987776511 1122456789999
Q ss_pred EEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEE
Q 005639 589 EICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKL 646 (686)
Q Consensus 589 ~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L 646 (686)
.+.+||.+++-.- .....+++|+.+++.+|.....-+..-...++|+++..
T Consensus 407 EL~n~p~i~d~~L-------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 407 ELDNCPLITDATL-------EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred eecCCCCchHHHH-------HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 9999998876411 12447889999999999888765544333344544443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=1.5e-10 Score=108.22 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEcc
Q 005639 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLV 186 (686)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~ 186 (686)
+.|.++++++|.++ .+..++ .-.+.+|+|+++.|.+..+-. +..+++|+.||+++|.+++ ...-.+|-+.++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34555555555443 232221 334455555555555544432 4455555555555555544 2223344555555555
Q ss_pred CCCCccccHHHhcCCCCCEEeccCCCCCcccCc-ccccCCCCCcEEEcCCCccc
Q 005639 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 187 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 239 (686)
+|.+..+. +++++.+|.+||+++|. +..+.. ..||+|+.|+++.+.+|.+.
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555442 45555555555555544 333321 11555555555555555443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=4e-09 Score=111.59 Aligned_cols=185 Identities=26% Similarity=0.307 Sum_probs=124.1
Q ss_pred EEecCCCC-ccCCCCCCCCCCcEEEecCCccCCccChhhhhCCC-CCcEEEecCCCCccCCcccCCCCCCcEEEccCCCC
Q 005639 91 IFLHDCKH-WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMS-NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (686)
Q Consensus 91 l~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~-~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l 168 (686)
+....+.+ .........+.++.|.+.++.+. +++... ..++ +|+.|+++++.+..+|..++.+++|+.|+++.|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 44444444 22333335567778888777766 554432 3343 78888888888888777778888888888888888
Q ss_pred CC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccc
Q 005639 169 GD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (686)
Q Consensus 169 ~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (686)
.+ +...+.+.+|+.|+++++++..+|..+.....|++|.++++. ....+.. ++++.++..+.+.++.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 77 555557888888888888888888777777778888888775 3334433 677777777776655443
Q ss_pred cccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEE
Q 005639 248 GRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (686)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 291 (686)
..+..++.+.+++.|+++++.+..++......+++.+.+.
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEecc
Confidence 1145666777777788777777777663344666666654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=9.2e-09 Score=108.80 Aligned_cols=168 Identities=29% Similarity=0.377 Sum_probs=100.3
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCC-CCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEec
Q 005639 131 GMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDL 208 (686)
Q Consensus 131 ~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 208 (686)
..+.+..|++.++.+.++|..++.+. +|++|+++++.+.. |..++.+++|+.|++++|++..+|...+.+++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34567777777777777776666664 77777777777666 46677777777777777777777766667777777777
Q ss_pred cCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcccc-ccCccE
Q 005639 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF-SKKLER 287 (686)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~ 287 (686)
+++. +..+|.. ++.+..|++|.+.++... ..+..+.++.++..+.+..+....++..+. ...++.
T Consensus 194 s~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 194 SGNK-ISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259 (394)
T ss_pred cCCc-cccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCceeeeccchhccccccce
Confidence 7765 6667764 355556777776666321 233455556666666655555544333322 244666
Q ss_pred EEEEEcCccCC--CCccccceEEEEec
Q 005639 288 YKIFIGDEWDW--SGNYKNKRVLKLKL 312 (686)
Q Consensus 288 L~l~~~~~~~~--~~~~~~l~~l~l~~ 312 (686)
|.+..+...++ ......++.+++..
T Consensus 260 L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 260 LDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred eccccccccccccccccCccCEEeccC
Confidence 65554443322 22334555555543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.6e-09 Score=101.58 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred hCCCCCcEEEecCCCCcc---CCcccCCCCCCcEEEccCCCCCCc---hhhcCCCCCcEEEccCCCCc--cccHHHhcCC
Q 005639 130 AGMSNLRGLALSNMQFLS---LPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIE--QLPEEMAQLT 201 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~~~---~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~ 201 (686)
..++++|-|||++|-+.. +-.-...|++|+.|+++.|++..| ..-..+.+|+.|.++.|+++ .+-.-...++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 344455555555443322 122223445555555555544331 11124455555555555544 1222233455
Q ss_pred CCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 202 QLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 202 ~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
+|+.|++..|..+...... ..-+..|++|++++|.+. ........+.++.|+.|.++.+++
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li----------~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI----------DFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCccc----------ccccccccccccchhhhhccccCc
Confidence 5556655555312111111 233445555666555443 011123344555555555554443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3e-08 Score=98.15 Aligned_cols=190 Identities=21% Similarity=0.146 Sum_probs=136.1
Q ss_pred hhcCCCCEEEecCCCCccCCC---CCCCCCCcEEEecCCccCC-ccChhhhhCCCCCcEEEecCCCCccCCccc--CCCC
Q 005639 83 DMLKNCPTIFLHDCKHWEVPE---GLEYPQLEFFCMSPRDHSI-KIPNHVFAGMSNLRGLALSNMQFLSLPSLF--HLPL 156 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~-~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i--~~l~ 156 (686)
...+++|.+++.++.+...+. ...++++|.|++++|-+.. ..-..+.+.+++|+.|+++.|.+...-++. ..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357889999999998866552 2389999999999986542 122345688999999999999886533322 4678
Q ss_pred CCcEEEccCCCCCC---chhhcCCCCCcEEEccCC-CCccccHHHhcCCCCCEEeccCCCCCcccCc-ccccCCCCCcEE
Q 005639 157 NLQTLCLDRCALGD---IAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDL 231 (686)
Q Consensus 157 ~L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L 231 (686)
+|+.|.+++|.++. -.....+++|+.|++.+| .+..--.....+..|+.|++++|. +..++. ..++.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 99999999999886 344567899999999999 333333345678899999999988 555552 127889999999
Q ss_pred EcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
+++.+.+..... -+.........+++|+.|++..|++...+.
T Consensus 277 nls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 277 NLSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hccccCcchhcC-----CCccchhhhcccccceeeecccCccccccc
Confidence 998887651110 112223345567788999998888755543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=3.4e-07 Score=101.49 Aligned_cols=105 Identities=26% Similarity=0.408 Sum_probs=90.9
Q ss_pred CCcEEEecCCCCc-cCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCc-cccHHHhcCCCCCEEecc
Q 005639 134 NLRGLALSNMQFL-SLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLS 209 (686)
Q Consensus 134 ~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 209 (686)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++++++|++|++++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999887 489999999999999999999985 788999999999999999988 789999999999999999
Q ss_pred CCCCCcccCcccccC-CCCCcEEEcCCCccc
Q 005639 210 GCSKLKVIPPNLLSG-LSRLEDLYMGNTSVK 239 (686)
Q Consensus 210 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~~~ 239 (686)
+|.....+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99866688876 554 457778888877543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1.2e-07 Score=69.99 Aligned_cols=58 Identities=33% Similarity=0.425 Sum_probs=35.4
Q ss_pred CCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCC
Q 005639 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 167 (686)
+|++|++++|.+. .++...|.++++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666666554 5565666666666666666666665543 45666666666666654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=5.1e-07 Score=100.17 Aligned_cols=104 Identities=24% Similarity=0.276 Sum_probs=88.2
Q ss_pred CCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCc-cccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEc
Q 005639 157 NLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (686)
Q Consensus 157 ~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (686)
.++.|+|+++.+.. |..++++++|++|++++|.+. .+|..++++++|+.|++++|.....+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 48899999999886 889999999999999999998 89999999999999999999855577876 899999999999
Q ss_pred CCCccccccccccccccccchhhhccC-CCCcEEEEEecC
Q 005639 234 GNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICD 272 (686)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 272 (686)
++|.+.+.. +..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~i-----------P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRV-----------PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccC-----------ChHHhhccccCceEEecCCc
Confidence 999877433 3555543 466788888776
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.8e-07 Score=69.12 Aligned_cols=58 Identities=34% Similarity=0.440 Sum_probs=39.2
Q ss_pred CCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCC
Q 005639 133 SNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNI 190 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l 190 (686)
++|++|++++|.++.+|. .+..+++|++|++++|.++. +..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356777777777777664 55667777777777777666 45666777777777766653
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.1e-06 Score=89.14 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=41.9
Q ss_pred cCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCcccccccc
Q 005639 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (686)
Q Consensus 406 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l 485 (686)
+++++.|+|++| .++.+|. -.++|++|.+.+|..++.++. ...++|+.|.+.+|+++..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~--------------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPG--------------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCc--------------hhhhhhhheEccCccccccc
Confidence 356778888887 6777763 134688888888888777664 23567888888888766654
Q ss_pred c
Q 005639 486 Y 486 (686)
Q Consensus 486 ~ 486 (686)
|
T Consensus 111 P 111 (426)
T PRK15386 111 P 111 (426)
T ss_pred c
Confidence 3
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-08 Score=92.98 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=19.4
Q ss_pred HHhhccceeecccccCccccccccccccccccceEeeccccC
Q 005639 322 MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPF 363 (686)
Q Consensus 322 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 363 (686)
...+++.+|+++++..+++... ..+.+|+.|++|.+++|..
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HhCCceeeeccccccccCchHH-HHHHhcchheeeehhhhcC
Confidence 3445555555555544433211 1234455555555555554
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=2.9e-07 Score=101.61 Aligned_cols=82 Identities=27% Similarity=0.310 Sum_probs=41.0
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC---chhhcCCCCCcE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD---IAIIGNLKKLEI 182 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---~~~i~~L~~L~~ 182 (686)
-+|.||+|.+.+-.+...-....+.++++|++||+|+++++.+ .++++|++|+.|.+.+=.+.. ...+.+|++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555554332222223345555555555555555555 345555555555555544443 344555555555
Q ss_pred EEccCC
Q 005639 183 LSLVDS 188 (686)
Q Consensus 183 L~l~~~ 188 (686)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=1.6e-07 Score=99.57 Aligned_cols=172 Identities=23% Similarity=0.219 Sum_probs=107.8
Q ss_pred CCCCEEEecCCCCccCCC-CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEcc
Q 005639 86 KNCPTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 164 (686)
..+..+++..+.+..+.. ...++++..|++.+|.+. .+... +..+.+|++|++++|.|+++. .+..+..|+.|++.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 334444455555544222 336677778888777765 23221 356788888888888887765 36677778888888
Q ss_pred CCCCCCchhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 165 ~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
+|.|.....+..++.|+.+++++|.+..+... ...+.+|+.+++.++. +..+.. +..+..+..+++..+.+.
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---- 221 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---- 221 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce----
Confidence 88888777777788888888888877777654 5777788888887766 444443 344444444455555443
Q ss_pred cccccccccchhhhccCCC--CcEEEEEecCCccc
Q 005639 244 GLNVGRSNASLQELKLLSH--LTTLEIQICDAMIL 276 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 276 (686)
.+..+..+.. |+.+++..+.+...
T Consensus 222 ---------~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---------KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---------eccCcccchhHHHHHHhcccCccccc
Confidence 1222222222 66677776665544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=1.7e-08 Score=105.64 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=100.4
Q ss_pred CCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCC
Q 005639 133 SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 211 (686)
..|.+.+.+.|.+..+-.++.-+++|+.|+|++|++.+...+..+++|++||+++|.+..+|.- ...+ +|+.|.+++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 3577777888887777777888899999999999998888899999999999999988888853 2233 3889999988
Q ss_pred CCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
. ++.+-. +.+|.+|+.||+++|-+. ....+..+..|..|+.|.+.+|.+
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 7 787776 889999999999888665 233456667777788888888764
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=2.7e-06 Score=86.45 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=46.0
Q ss_pred cCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEeccccccee
Q 005639 529 VFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (686)
Q Consensus 529 ~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~ 599 (686)
.++.++.|+|++|++++++ ..+ ++|++|.+++|.+|+.+ |..+ .++|+.|+|++|..+..+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP--~LP----~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP--VLP----NELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCCCCcccC--CCC----CCCcEEEccCCCCcccC-Cchh---hhhhhheEccCccccccc
Confidence 4578888999988888876 233 67889999889888887 4333 368888888888777655
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.2e-06 Score=56.95 Aligned_cols=37 Identities=41% Similarity=0.457 Sum_probs=17.9
Q ss_pred CCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC
Q 005639 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD 170 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~ 170 (686)
+|++|++++|.++++|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555555443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3e-07 Score=86.59 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=10.9
Q ss_pred ccccccceEeeccccCc
Q 005639 348 EGFLQLKHLHVQNNPFI 364 (686)
Q Consensus 348 ~~l~~L~~L~l~~~~~l 364 (686)
..+|+|.+|++++|..+
T Consensus 310 ~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVML 326 (419)
T ss_pred HhCCceeeecccccccc
Confidence 45677777777766544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.5e-06 Score=55.49 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=15.8
Q ss_pred CCcEEEccCCCCccccHHHhcCCCCCEEeccCCC
Q 005639 179 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 212 (686)
+|++|++++|+++.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444444444455554444555555555555543
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=9.7e-07 Score=93.56 Aligned_cols=172 Identities=21% Similarity=0.237 Sum_probs=129.8
Q ss_pred hhcCCCCEEEecCCCCccCCC-CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
...+++..+++..|.+..+.. ...+++|++|++++|.+. .+.. +..+..|+.|++++|.+..+. .+..++.|+.+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 346888999999999998888 568999999999999987 4433 567888999999999998877 36669999999
Q ss_pred EccCCCCCCchh--hcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCC--CcEEEcCCCc
Q 005639 162 CLDRCALGDIAI--IGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR--LEDLYMGNTS 237 (686)
Q Consensus 162 ~l~~~~l~~~~~--i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~--L~~L~l~~~~ 237 (686)
++++|.+...+. ...+.+|+.+.+.+|.+..+. .+..+..+..+++..+. +..+.. +..+.. |+.+++.++.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCc
Confidence 999999988555 699999999999999777653 23444444444666655 444443 344444 8889888887
Q ss_pred cccccccccccccccch-hhhccCCCCcEEEEEecCCcc
Q 005639 238 VKWEFEGLNVGRSNASL-QELKLLSHLTTLEIQICDAMI 275 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 275 (686)
+. .. ..+..+.++..|++..+.+..
T Consensus 244 i~-------------~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 244 IS-------------RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cc-------------cccccccccccccccchhhccccc
Confidence 65 12 456667777777777665433
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=3.6e-06 Score=93.05 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=84.9
Q ss_pred CCCCCcEEEecCCcc-CCccChhhhhCCCCCcEEEecCCCCcc--CCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcE
Q 005639 106 EYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNMQFLS--LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEI 182 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~-~~~~~~~~f~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~ 182 (686)
.-.+|+.|++.|... ....+..+...++.||.|.++|-.+.. +-....++++|+.||+++++++....+++|++||+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 345677777777542 234455556677888888888765532 23334567788888888888887788888888888
Q ss_pred EEccCCCCcccc--HHHhcCCCCCEEeccCCCCCccc--Cccc---ccCCCCCcEEEcCCCccc
Q 005639 183 LSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVI--PPNL---LSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 183 L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~--p~~~---i~~L~~L~~L~l~~~~~~ 239 (686)
|.+++=.+..-. .++-+|++|++||++.......- .... -..|++|+.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 887775555322 34677888888888775432211 1100 123677777777766554
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=3.2e-06 Score=81.81 Aligned_cols=179 Identities=17% Similarity=0.156 Sum_probs=100.2
Q ss_pred CCCEEEecCCCC--ccCCC---CC-CCCCCcEEEecCCccCCccC------------hhhhhCCCCCcEEEecCCCCccC
Q 005639 87 NCPTIFLHDCKH--WEVPE---GL-EYPQLEFFCMSPRDHSIKIP------------NHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 87 ~lr~l~l~~~~~--~~l~~---~~-~~~~Lr~L~l~~~~~~~~~~------------~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
+++.++++.|-+ ..++. .. ++..|+.|.+.+|.+...-. ......-..|||++..+|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 666777776655 12221 11 56677777777765431100 00112345677777777766543
Q ss_pred C-----cccCCCCCCcEEEccCCCCCC------chhhcCCCCCcEEEccCCCCc-----cccHHHhcCCCCCEEeccCCC
Q 005639 149 P-----SLFHLPLNLQTLCLDRCALGD------IAIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 149 p-----~~i~~l~~L~~L~l~~~~l~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 212 (686)
+ ..+...+.|+.+.+..|.|.. ...+..+++|++||++.|.++ .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 345556777777777777654 245667777777777777555 233445566677777777765
Q ss_pred CCcccC-----cccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 213 KLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 213 ~l~~~p-----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
++.-. ..+-...++|++|.+.+|.+..... ......+...+.|+.|++++|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-------~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-------LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHHHH-------HHHHHHHhcchhhHHhcCCcccc
Confidence 33211 1111335677777777776652111 11223344566777777777765
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=1.7e-06 Score=94.43 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHhhccceeecccccCccccccccccccccccceEeeccc-cCceeEEecccccccccccccchhhccCCcchhhhhcC
Q 005639 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNN-PFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLG 399 (686)
Q Consensus 321 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 399 (686)
....+.|+.|.+..+....+..........++|+.|++.++ ...... ..........+++|+.|.+..+..+.+....
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 33467788888887776665322223456888999998873 222211 1001113344578888888877654443211
Q ss_pred CCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCcc
Q 005639 400 QLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK 447 (686)
Q Consensus 400 ~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 447 (686)
.. ....++|+.|.+.+|..+++..-......+++|++|++++|..+.
T Consensus 263 ~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 263 AL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 11 122678888888888877665444456678888888888888763
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=6.8e-05 Score=67.21 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=37.5
Q ss_pred hhCCCCCcEEEecCCCCccCCcccCC-CCCCcEEEccCCCCCC---chhhcCCCCCcEEEccCCCCccccHH----HhcC
Q 005639 129 FAGMSNLRGLALSNMQFLSLPSLFHL-PLNLQTLCLDRCALGD---IAIIGNLKKLEILSLVDSNIEQLPEE----MAQL 200 (686)
Q Consensus 129 f~~l~~Lr~L~L~~~~~~~lp~~i~~-l~~L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l 200 (686)
|..++.|..|.+.+|+|..+-..+.. +++|..|.+.+|+|.. ...+..++.|++|.+-+|.++.-+.- +.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 34444444444444444444333322 2344444444444333 33344444555555544444433221 4555
Q ss_pred CCCCEEeccC
Q 005639 201 TQLRLFDLSG 210 (686)
Q Consensus 201 ~~L~~L~l~~ 210 (686)
++|+.||..+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 6666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=6.8e-05 Score=67.23 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=53.6
Q ss_pred CCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhc-CCCCCEEeccCCCCCcc---cCcccccCCCCCcEEE
Q 005639 157 NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQ-LTQLRLFDLSGCSKLKV---IPPNLLSGLSRLEDLY 232 (686)
Q Consensus 157 ~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~l~~---~p~~~i~~L~~L~~L~ 232 (686)
+...+|+++|.+.....+..+..|.+|.+.+|+|+++-..+.. +++|..|.+.+|. +.+ +.+ +..++.|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceee
Confidence 4455555555555555555555556666655555555444433 3345666555554 222 222 45555666666
Q ss_pred cCCCccccccccccccccccchhhhccCCCCcEEEEEec
Q 005639 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (686)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (686)
+-+|.+. ....+..-.+..+++|+.||+...
T Consensus 120 ll~Npv~--------~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVE--------HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchh--------cccCceeEEEEecCcceEeehhhh
Confidence 5555543 222333344555666666665543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.6e-06 Score=91.28 Aligned_cols=125 Identities=26% Similarity=0.229 Sum_probs=93.6
Q ss_pred hcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEE
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTL 161 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L 161 (686)
.+.++...+.++|.+..+.... -++.++.|++++|++. ... .+..+.+|+.|||+.|.+..+|.- ...++ |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heee
Confidence 4566777777877776555444 5678889999998876 222 367888999999999988888752 22333 9999
Q ss_pred EccCCCCCCchhhcCCCCCcEEEccCCCCcccc--HHHhcCCCCCEEeccCCC
Q 005639 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 162 ~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 212 (686)
.+++|.+++...+.+|++|+.||+++|-+...- ..++.|..|+.|.+.||+
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999998888888899999999999988555322 236778888888888887
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=1.2e-05 Score=67.24 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=51.6
Q ss_pred hCCCCCcEEEecCCCCccCCcccC-CCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEe
Q 005639 130 AGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFD 207 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 207 (686)
.+..+|...+|++|.+.++|..+. +.+.+.+|++.+|.+.+ |..+..++.|+.|+++.|.+...|+-|..|.+|-+|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 334455555666666666655542 33456666666666665 5556666666666666666666666666666666666
Q ss_pred ccCCCCCcccCc
Q 005639 208 LSGCSKLKVIPP 219 (686)
Q Consensus 208 l~~~~~l~~~p~ 219 (686)
..++. ...+|-
T Consensus 130 s~~na-~~eid~ 140 (177)
T KOG4579|consen 130 SPENA-RAEIDV 140 (177)
T ss_pred CCCCc-cccCcH
Confidence 65554 444443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=7.3e-06 Score=68.43 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=91.1
Q ss_pred CCCEEEecCCCCccCCC----CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEE
Q 005639 87 NCPTIFLHDCKHWEVPE----GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 162 (686)
....+++++|.+..+++ .+....|...++++|.+. .+|..+-.+++.+..|++++|.+.++|..+..++.||.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34456777776644433 236677888899998876 7888877777889999999999999999999999999999
Q ss_pred ccCCCCCC-chhhcCCCCCcEEEccCCCCccccHH
Q 005639 163 LDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEE 196 (686)
Q Consensus 163 l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 196 (686)
++.|++.. |..|..|.+|-+|+..++.+.++|.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99999887 99999999999999999988888876
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=4.2e-05 Score=74.30 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=104.5
Q ss_pred cCCCCEEEecCCCCcc--------------CC-CCCCCCCCcEEEecCCccCC---ccChhhhhCCCCCcEEEecCCCCc
Q 005639 85 LKNCPTIFLHDCKHWE--------------VP-EGLEYPQLEFFCMSPRDHSI---KIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~--------------l~-~~~~~~~Lr~L~l~~~~~~~---~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
...+.+|.+.+|.+.. .. ...+-+.||+++...|.... ......|+..+.|+.+.++.|.|.
T Consensus 119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc
Confidence 5677788888887621 11 12267788998888886531 122345777888888888888774
Q ss_pred c-----CCcccCCCCCCcEEEccCCCCCC------chhhcCCCCCcEEEccCCCCcc-----ccHHH-hcCCCCCEEecc
Q 005639 147 S-----LPSLFHLPLNLQTLCLDRCALGD------IAIIGNLKKLEILSLVDSNIEQ-----LPEEM-AQLTQLRLFDLS 209 (686)
Q Consensus 147 ~-----lp~~i~~l~~L~~L~l~~~~l~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i-~~l~~L~~L~l~ 209 (686)
. +..++..++||++||+++|.++. -..+..+++|+.|++++|.++. +-..+ ...++|+.|.+.
T Consensus 199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 3 33456788899999999888765 2556778889999999887662 22222 246788999988
Q ss_pred CCCCCcccCcc----cccCCCCCcEEEcCCCccc
Q 005639 210 GCSKLKVIPPN----LLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 210 ~~~~l~~~p~~----~i~~L~~L~~L~l~~~~~~ 239 (686)
+|. ++.-... .+...+.|..|++++|.+.
T Consensus 279 gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 279 GNE-ITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cch-hHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 876 3321110 1455788889999888763
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=3.4e-05 Score=73.06 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=39.1
Q ss_pred CCCcEEEccCCCCcc---ccHHHhcCCCCCEEeccCCCC---CcccCcccccCCCCCcEEEcCCCccccccccccccccc
Q 005639 178 KKLEILSLVDSNIEQ---LPEEMAQLTQLRLFDLSGCSK---LKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSN 251 (686)
Q Consensus 178 ~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~---l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (686)
++++.||+.+|.++. +-.-..+|+.|++|+++.|+- +...| ..+.+|++|-+.+..+.|...
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~-------- 138 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQS-------- 138 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhh--------
Confidence 344444444444332 212234556666666655541 11111 133466666666665554321
Q ss_pred cchhhhccCCCCcEEEEEecC
Q 005639 252 ASLQELKLLSHLTTLEIQICD 272 (686)
Q Consensus 252 ~~~~~l~~l~~L~~L~l~~~~ 272 (686)
-..+..++.++.|+++.|+
T Consensus 139 --~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 --TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred --hhhhhcchhhhhhhhccch
Confidence 2445556666666666554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=2e-05 Score=73.88 Aligned_cols=105 Identities=26% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCc-ccccCCCCCcEEEc
Q 005639 155 PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYM 233 (686)
Q Consensus 155 l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l 233 (686)
+.+.+.|+.+||.+.++....+++.|++|.|+-|+|+.+. .+..+++|+.|++..|. +..+.+ ..+.++++|++|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 3455667777777777777777777777777777777774 46777777777777765 555544 22567777777777
Q ss_pred CCCccccccccccccccccchhhhccCCCCcEEE
Q 005639 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (686)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (686)
..|.-.+. ....+.-..+..|+||++||
T Consensus 96 ~ENPCc~~------ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE------AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc------cchhHHHHHHHHcccchhcc
Confidence 76654321 11233445566677777765
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.0002 Score=67.15 Aligned_cols=111 Identities=25% Similarity=0.268 Sum_probs=62.5
Q ss_pred CCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCC--CCc-cccHHHhcCCCCCEEeccCCCC--CcccCcccccCCCCC
Q 005639 154 LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS--NIE-QLPEEMAQLTQLRLFDLSGCSK--LKVIPPNLLSGLSRL 228 (686)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~--l~~~p~~~i~~L~~L 228 (686)
.+..|+.|++.++.++....+-.|++|++|.++.| ++. .++.-..++++|++|++++|.. +..+++ +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 34455555566666555555666667777777666 443 4555555667777777777651 234444 5666677
Q ss_pred cEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
..|++++|.... ...+.-..+.-+++|+.|+-......
T Consensus 119 ~~Ldl~n~~~~~--------l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 119 KSLDLFNCSVTN--------LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhhcccCCccc--------cccHHHHHHHHhhhhccccccccCCc
Confidence 777777765541 11222233445566666655444433
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00043 Score=65.86 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCEEEecCCCCccCCCCC----CCCCCcEEEecCCccCC--ccChhhhhCCCCCcEEEecCCCCccCCccc-CCCCCCcE
Q 005639 88 CPTIFLHDCKHWEVPEGL----EYPQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQT 160 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~--~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i-~~l~~L~~ 160 (686)
+.-+.+.++.+....... .++.++.+++.+|.++. ++ ..+..++++|++|+++.|.+..--+.. ..+++|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 334555555554333221 67788888888887652 22 245678888899988888765321222 35678888
Q ss_pred EEccCCCCCC---chhhcCCCCCcEEEccCCCCc
Q 005639 161 LCLDRCALGD---IAIIGNLKKLEILSLVDSNIE 191 (686)
Q Consensus 161 L~l~~~~l~~---~~~i~~L~~L~~L~l~~~~l~ 191 (686)
|-|.|+.+.- -..+..++.++.|.++.|+++
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8888887553 455677777888877777444
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=6.9e-05 Score=81.79 Aligned_cols=196 Identities=19% Similarity=0.159 Sum_probs=111.3
Q ss_pred cCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeec-cCccccccccccCCcccCCCcceeecccceEecCccccccc
Q 005639 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINC-KNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (686)
Q Consensus 406 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 484 (686)
.+.|+.|.+.+|..+....-......++.|+.|++.+| ......+.. .......+++|+.|++..|..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL--------LLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH--------hhhhhhhcCCcCccchhhhhccCc
Confidence 56677777777777665322234566778888887763 222211110 000123457777777777665433
Q ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccc-ccceecccCccccccCCccEEE
Q 005639 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLI 563 (686)
Q Consensus 485 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~-~l~~~~~~~~~~~~l~~L~~L~ 563 (686)
... +. -...+++|++|.+.+| .++.--..... ..+++|++|+
T Consensus 259 ~~l----------------------------------~~--l~~~c~~L~~L~l~~c~~lt~~gl~~i~-~~~~~L~~L~ 301 (482)
T KOG1947|consen 259 IGL----------------------------------SA--LASRCPNLETLSLSNCSNLTDEGLVSIA-ERCPSLRELD 301 (482)
T ss_pred hhH----------------------------------HH--HHhhCCCcceEccCCCCccchhHHHHHH-HhcCcccEEe
Confidence 210 00 0113789999998888 55542222122 1678899999
Q ss_pred EecCCCCccccChhHHhhcccccEEEEecc---cccceeecccccccccccccc-cccceeecccCCCcCeeecCCCcCC
Q 005639 564 VHGCEKLKYLFPSSMIRNFVQLEHLEICYC---SSLESIVGKESGEEATTTFVF-PKVTFLKLWNLSELKTFYPGTHTSK 639 (686)
Q Consensus 564 l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c---~~L~~~~~~~~~~~~~~~~~~-~~L~~L~i~~c~~L~~l~~~~~~~~ 639 (686)
+++|..+....-..+..+++.|+.|.+..+ +.+++.... ...... -.+..+.+.+|++++.+......
T Consensus 302 l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~------~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-- 373 (482)
T KOG1947|consen 302 LSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS------GLLTLTSDDLAELILRSCPKLTDLSLSYCG-- 373 (482)
T ss_pred eecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH------HhhccCchhHhHHHHhcCCCcchhhhhhhh--
Confidence 999988855322334556777666665544 345554110 001122 26888889999999887654322
Q ss_pred CCCcc-EEEEecCCCc
Q 005639 640 WPMLK-KLEVYGCDKV 654 (686)
Q Consensus 640 ~~~L~-~L~I~~C~~L 654 (686)
..... .+...+||+|
T Consensus 374 ~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 374 ISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCcchHHHhcCCccc
Confidence 13333 5777889888
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.00065 Score=63.86 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=24.1
Q ss_pred hCCCCCcEEEecCC--CCc-cCCcccCCCCCCcEEEccCCCCCC---chhhcCCCCCcEEEccCC
Q 005639 130 AGMSNLRGLALSNM--QFL-SLPSLFHLPLNLQTLCLDRCALGD---IAIIGNLKKLEILSLVDS 188 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~--~~~-~lp~~i~~l~~L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~ 188 (686)
..+++|+.|+++.| .+. .++-...++++|++|++++|+|+. .....++.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 33444444444444 221 122223333555555555554433 222333344444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00013 Score=68.66 Aligned_cols=100 Identities=23% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEcc
Q 005639 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLV 186 (686)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~ 186 (686)
+.+.+.|++.|+.+. ++ .+..+|+.|.||.|+-|.|+++.. +..|++|+.|+|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I------------------ 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCI------------------ 75 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccc------------------
Confidence 344555555555443 22 234555556666665555555432 44455555555555544
Q ss_pred CCCCccccH--HHhcCCCCCEEeccCCCCCcccCcc----cccCCCCCcEEE
Q 005639 187 DSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN----LLSGLSRLEDLY 232 (686)
Q Consensus 187 ~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~----~i~~L~~L~~L~ 232 (686)
..+.+ -+.++++||.|-+..|+-...-+.+ ++.-|++|+.||
T Consensus 76 ----~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 76 ----ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ----ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 43322 2456666666666666544443332 345577777775
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.58 E-value=0.0014 Score=61.62 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=32.7
Q ss_pred cccccceEeeccccCceeEEeccc---ccccccccccchhhccCCcchh----hhhcCCCCccccCCccEEEEecCCCCc
Q 005639 349 GFLQLKHLHVQNNPFILFIVDSMA---WVRYNAFLLLESLVLHNLIHLE----KICLGQLRAESFYKLKIIKVRNCDKLK 421 (686)
Q Consensus 349 ~l~~L~~L~l~~~~~l~~l~~~~~---~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~L~~L~l~~C~~l~ 421 (686)
.++.|+.|.+.+|---.. +... .+....+|+|..|...+...-. .+....+..+.+|-|..|.+.+ +.++
T Consensus 240 ~W~~lrEL~lnDClls~~--G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~ 316 (388)
T COG5238 240 EWNLLRELRLNDCLLSNE--GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIK 316 (388)
T ss_pred ccchhhhccccchhhccc--cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccch
Confidence 345566666666642110 0000 1123345666666654432111 1111123445677777777776 4444
Q ss_pred cc
Q 005639 422 NI 423 (686)
Q Consensus 422 ~l 423 (686)
..
T Consensus 317 E~ 318 (388)
T COG5238 317 EL 318 (388)
T ss_pred hH
Confidence 43
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.34 E-value=0.012 Score=50.94 Aligned_cols=115 Identities=16% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEI 182 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~ 182 (686)
.+++|+.+.+.. ... .+....|.++..|+.+++.++ +..++. .+..+..|+++.+.+ .+.. ...+....+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 445566666553 222 455555666666666666553 444443 345555666666654 3322 234455666666
Q ss_pred EEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCC
Q 005639 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (686)
Q Consensus 183 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L 228 (686)
+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 666543 4444443 4444 666665554 2445555545555444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0013 Score=59.30 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=35.7
Q ss_pred ccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCc
Q 005639 555 YSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSEL 628 (686)
Q Consensus 555 ~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L 628 (686)
.+++++.|.+.+|..+.+---..+.+-.++|+.|+|++|+.+++. |.. ....+++|+.|.+.+.|..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~--~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLA--CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHH--HHHHhhhhHHHHhcCchhh
Confidence 455666666666666554321222233456666666666666554 221 2345666666666665543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0037 Score=34.87 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=9.8
Q ss_pred CcEEEccCCCCccccHHHh
Q 005639 180 LEILSLVDSNIEQLPEEMA 198 (686)
Q Consensus 180 L~~L~l~~~~l~~lp~~i~ 198 (686)
|++||+++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0059 Score=34.05 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=12.7
Q ss_pred CCcEEEecCCCCccCCcccCC
Q 005639 134 NLRGLALSNMQFLSLPSLFHL 154 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp~~i~~ 154 (686)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.24 E-value=0.019 Score=54.28 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=47.2
Q ss_pred hCCCCCcEEEecCCCCcc-----CCcccCCCCCCcEEEccCCCCC---C--c-------hhhcCCCCCcEEEccCCCCc-
Q 005639 130 AGMSNLRGLALSNMQFLS-----LPSLFHLPLNLQTLCLDRCALG---D--I-------AIIGNLKKLEILSLVDSNIE- 191 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~---~--~-------~~i~~L~~L~~L~l~~~~l~- 191 (686)
..+..+..++||||.|.. +...|.+-++|+..+++.-... + + +.+-++++|++.+++.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 347778888999988753 4555666778888887764321 1 1 23445555555555555333
Q ss_pred cccH----HHhcCCCCCEEeccCCC
Q 005639 192 QLPE----EMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 192 ~lp~----~i~~l~~L~~L~l~~~~ 212 (686)
+.|. -|.+-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 2222 23444555555555544
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.24 E-value=0.043 Score=47.33 Aligned_cols=107 Identities=20% Similarity=0.325 Sum_probs=63.6
Q ss_pred ccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-Hh
Q 005639 123 KIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MA 198 (686)
Q Consensus 123 ~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~ 198 (686)
.++...|.++.+|+.+.+.. .+..+++ .+..+.+|+.+.+.++ +.. -..+.+..+|+.+.+.. .+..++.. +.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35566789999999999875 5666654 5677888999998874 555 35577777888888866 56666554 56
Q ss_pred cCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCC
Q 005639 199 QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (686)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (686)
.+++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6888888888652 567777667776 788877654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0039 Score=56.29 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=50.6
Q ss_pred cccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCcc
Q 005639 376 YNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK 447 (686)
Q Consensus 376 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 447 (686)
...+++++.|.+.+|..+.+|+..-... .+|+|+.|+|++|+++++-. ..++..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 3456778888888888888887544433 67888888888888888763 3466777888888777765443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.34 E-value=0.029 Score=28.96 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=6.5
Q ss_pred CCcEEEccCCCCcccc
Q 005639 179 KLEILSLVDSNIEQLP 194 (686)
Q Consensus 179 ~L~~L~l~~~~l~~lp 194 (686)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.26 E-value=0.056 Score=27.86 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=6.4
Q ss_pred CCcEEEecCCCCccCC
Q 005639 134 NLRGLALSNMQFLSLP 149 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp 149 (686)
+||.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.98 E-value=0.0038 Score=57.44 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccC
Q 005639 132 MSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSG 210 (686)
Q Consensus 132 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 210 (686)
++...+||++.++.-.+-..++.+..|..|+++.+.+.. |..++.+..++.++...|+.+..|.+.++++++++++..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 344444444444444444444444444444444444444 4444444444444444444445555555555555555444
Q ss_pred CC
Q 005639 211 CS 212 (686)
Q Consensus 211 ~~ 212 (686)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 33
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.79 E-value=0.25 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCCcEEEccCCCCccccHH
Q 005639 177 LKKLEILSLVDSNIEQLPEE 196 (686)
Q Consensus 177 L~~L~~L~l~~~~l~~lp~~ 196 (686)
|.+|++|++++|+++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666667766666666655
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.79 E-value=0.25 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCCcEEEccCCCCccccHH
Q 005639 177 LKKLEILSLVDSNIEQLPEE 196 (686)
Q Consensus 177 L~~L~~L~l~~~~l~~lp~~ 196 (686)
|.+|++|++++|+++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666667766666666655
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.05 E-value=0.015 Score=53.71 Aligned_cols=87 Identities=15% Similarity=0.005 Sum_probs=75.4
Q ss_pred ccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCc
Q 005639 151 LFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (686)
Q Consensus 151 ~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (686)
.|.....-..||++.+++.. -..+..++.|..||++.+.+..+|.+++.+..++++++..|. ....|.. .++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcc
Confidence 45667888999999998766 566778889999999999999999999999999999998876 8899988 89999999
Q ss_pred EEEcCCCccc
Q 005639 230 DLYMGNTSVK 239 (686)
Q Consensus 230 ~L~l~~~~~~ 239 (686)
.++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9998877654
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.47 E-value=0.33 Score=28.23 Aligned_cols=16 Identities=31% Similarity=0.854 Sum_probs=12.6
Q ss_pred CCCccEEEEecCCCce
Q 005639 640 WPMLKKLEVYGCDKVK 655 (686)
Q Consensus 640 ~~~L~~L~I~~C~~L~ 655 (686)
|+.|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888775
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.73 E-value=0.71 Score=26.74 Aligned_cols=19 Identities=58% Similarity=0.632 Sum_probs=11.5
Q ss_pred CCCcEEEecCCCCccCCcc
Q 005639 133 SNLRGLALSNMQFLSLPSL 151 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~~ 151 (686)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.73 E-value=0.71 Score=26.74 Aligned_cols=19 Identities=58% Similarity=0.632 Sum_probs=11.5
Q ss_pred CCCcEEEecCCCCccCCcc
Q 005639 133 SNLRGLALSNMQFLSLPSL 151 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~~ 151 (686)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.52 E-value=1.9 Score=24.95 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=12.8
Q ss_pred CCCcEEEccCCCCccccH
Q 005639 178 KKLEILSLVDSNIEQLPE 195 (686)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~ 195 (686)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777775
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.30 E-value=0.97 Score=25.56 Aligned_cols=11 Identities=45% Similarity=0.474 Sum_probs=3.7
Q ss_pred CCcEEEccCCC
Q 005639 157 NLQTLCLDRCA 167 (686)
Q Consensus 157 ~L~~L~l~~~~ 167 (686)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.35 E-value=5.1 Score=23.29 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=7.9
Q ss_pred CCCcEEEccCCCCcc
Q 005639 178 KKLEILSLVDSNIEQ 192 (686)
Q Consensus 178 ~~L~~L~l~~~~l~~ 192 (686)
.+|+.|+++.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455555555555543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.73 E-value=0.34 Score=51.80 Aligned_cols=178 Identities=20% Similarity=0.142 Sum_probs=99.1
Q ss_pred CCEEEecCCCCccCC-----C-CCCCCCCcEEEecCCccCCccChhh---hhCC-CCCcEEEecCCCCcc-----CCccc
Q 005639 88 CPTIFLHDCKHWEVP-----E-GLEYPQLEFFCMSPRDHSIKIPNHV---FAGM-SNLRGLALSNMQFLS-----LPSLF 152 (686)
Q Consensus 88 lr~l~l~~~~~~~l~-----~-~~~~~~Lr~L~l~~~~~~~~~~~~~---f~~l-~~Lr~L~L~~~~~~~-----lp~~i 152 (686)
+.++++.+|.+..-. . ......|..|++.+|.+...--..+ +... ..+++|++..+.+.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777663221 1 1256667777887776552111111 1222 445667776666543 44555
Q ss_pred CCCCCCcEEEccCCCCCC------chhhc----CCCCCcEEEccCCCCcc-----ccHHHhcCCC-CCEEeccCCCCCcc
Q 005639 153 HLPLNLQTLCLDRCALGD------IAIIG----NLKKLEILSLVDSNIEQ-----LPEEMAQLTQ-LRLFDLSGCSKLKV 216 (686)
Q Consensus 153 ~~l~~L~~L~l~~~~l~~------~~~i~----~L~~L~~L~l~~~~l~~-----lp~~i~~l~~-L~~L~l~~~~~l~~ 216 (686)
....+++.++++.|.+.. +..+. ...++++|++.+|.++. +-..+...+. ++.|++..|. +..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 567778888888776532 22233 46778888888776652 1122344444 5557776665 322
Q ss_pred -----cCcccccCC-CCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 217 -----IPPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 217 -----~p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
+.+. +..+ ..++++++..|.+.. .......+.+....+++.+.++.+...
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~-------~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITE-------KGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccc-------cchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2222 4445 567788887777651 111233345566667777777776643
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.72 E-value=15 Score=21.62 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=8.0
Q ss_pred CCcEEEccCCCCCC
Q 005639 157 NLQTLCLDRCALGD 170 (686)
Q Consensus 157 ~L~~L~l~~~~l~~ 170 (686)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666665543
No 89
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=34.39 E-value=61 Score=25.27 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=24.0
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP 43 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~ 43 (686)
|+|++.+..|.+ .+.++|-.++..+++ .++|..+.
T Consensus 35 elVdWL~~~~~~---~sR~eAv~lg~~Ll~----~G~i~HV~ 69 (83)
T cd04443 35 DLVSWLIEVGLA---QDRGEAVLYGRRLLQ----GGVLQHIT 69 (83)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHHHHH----CCCEEecC
Confidence 577766655555 466788888755554 99998774
No 90
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=31.90 E-value=53 Score=26.21 Aligned_cols=35 Identities=11% Similarity=-0.071 Sum_probs=26.1
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP 43 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~ 43 (686)
|||++-|..|-+. +.++|..++..+ .+.++|+.+.
T Consensus 42 ElVdWLi~~g~~~---tR~eAv~~gq~L----l~~gii~HV~ 76 (93)
T cd04440 42 KLVDWLLAQGDCR---TREEAVILGVGL----CNNGFMHHVL 76 (93)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHH----HhCCCEEecC
Confidence 6788888887663 778888888544 4599998763
No 91
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=25.44 E-value=92 Score=24.41 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=25.0
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP 43 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~ 43 (686)
|+|++-+..|.+ .+.++|-.++.. |.+.++|+.+.
T Consensus 37 ElVdWL~~~~~~---~sR~eAv~lgq~----Ll~~gii~HV~ 71 (85)
T cd04441 37 EFIDWLLQEGEA---ESRREAVQLCRR----LLEHGIIQHVS 71 (85)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHH----HHHCCCEEecC
Confidence 677777777754 467888888744 45599998774
No 92
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=24.24 E-value=1e+02 Score=23.90 Aligned_cols=36 Identities=11% Similarity=-0.151 Sum_probs=24.0
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCCC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPT 44 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~~ 44 (686)
|+|++-+..|.+ .+.++|-.++. .|.+.++|+.+.+
T Consensus 33 elVdWL~~~~~~---~~R~eAv~~gq----~Ll~~g~i~hV~~ 68 (81)
T cd04448 33 ELVNWLIRQGKA---ATRVQAIAIGQ----ALLDAGWIECVSD 68 (81)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHH----HHHHCCCEEecCC
Confidence 566666666554 46677777774 4555999988743
No 93
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=20.32 E-value=1.1e+02 Score=23.85 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=21.8
Q ss_pred chhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCC
Q 005639 2 DLLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGP 43 (686)
Q Consensus 2 ~Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~ 43 (686)
|||. |+.+.+- ...+.++|..++.. |++.++|..+.
T Consensus 34 dlVd-WL~~~~~-~~~~R~eAv~~g~~----Ll~~G~i~HV~ 69 (84)
T cd04438 34 DLVD-WLLSHVE-GLTDRREARKYASS----LLKLGYIRHTV 69 (84)
T ss_pred HHHH-HHHHhCC-CCCCHHHHHHHHHH----HHHCCcEEecC
Confidence 4555 5555331 11356788888854 44599998763
Done!