Query 005639
Match_columns 686
No_of_seqs 390 out of 3562
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 3E-34 1E-38 320.8 28.1 510 69-652 16-556 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 3E-33 1E-37 312.7 29.0 504 88-662 13-541 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.4E-32 3.2E-36 304.7 33.5 540 69-651 9-619 (680)
4 3rgz_A Protein brassinosteroid 100.0 7.5E-33 2.6E-37 316.5 24.5 458 84-594 75-549 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1E-31 3.5E-36 300.3 32.9 506 70-652 18-558 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.5E-31 8.7E-36 297.0 32.1 502 88-652 14-534 (606)
7 3rgz_A Protein brassinosteroid 100.0 1.1E-31 3.8E-36 306.8 29.6 516 83-661 97-724 (768)
8 2z63_A TOLL-like receptor 4, v 100.0 1.2E-31 4.1E-36 297.6 28.3 486 70-652 13-529 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-31 1.7E-35 298.8 32.8 521 89-659 7-601 (680)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-30 3.8E-35 288.3 27.5 470 92-654 11-510 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-30 9.1E-35 298.5 31.0 501 69-652 9-537 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 5.2E-30 1.8E-34 290.7 24.5 385 124-655 440-873 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 6.2E-29 2.1E-33 275.7 32.0 474 88-659 9-511 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 6.9E-30 2.4E-34 282.0 22.7 462 73-627 14-509 (549)
15 4eco_A Uncharacterized protein 100.0 1.6E-29 5.6E-34 282.2 24.9 425 86-655 81-633 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-28 9.3E-33 267.2 28.3 459 89-652 3-479 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 5.3E-27 1.8E-31 263.8 32.4 508 71-650 38-576 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2E-27 6.7E-32 260.3 27.2 435 111-660 3-462 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-27 2.3E-31 270.0 29.7 155 83-239 45-217 (844)
20 4eco_A Uncharacterized protein 100.0 4E-28 1.4E-32 271.0 17.4 428 108-655 81-601 (636)
21 1o6v_A Internalin A; bacterial 100.0 1.7E-26 5.8E-31 248.7 28.2 348 83-599 43-390 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-26 1E-30 253.1 29.0 451 88-652 33-508 (562)
23 4g8a_A TOLL-like receptor 4; l 99.9 4.6E-26 1.6E-30 256.2 30.7 497 89-651 34-552 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.6E-26 2.3E-30 250.3 28.4 448 106-660 29-491 (562)
25 3v47_A TOLL-like receptor 5B a 99.9 8.1E-26 2.8E-30 243.2 26.0 383 89-594 13-406 (455)
26 4ecn_A Leucine-rich repeat pro 99.9 3.4E-26 1.2E-30 259.5 24.0 392 96-597 435-873 (876)
27 1o6v_A Internalin A; bacterial 99.9 9.5E-26 3.2E-30 242.9 26.4 343 106-626 44-386 (466)
28 4fmz_A Internalin; leucine ric 99.9 1E-25 3.6E-30 233.1 23.2 126 107-239 43-168 (347)
29 1jl5_A Outer protein YOPM; leu 99.9 4.1E-26 1.4E-30 243.5 17.5 408 85-665 10-440 (454)
30 3v47_A TOLL-like receptor 5B a 99.9 3.1E-25 1.1E-29 238.6 23.1 368 71-567 17-405 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.9E-25 2E-29 234.7 24.4 168 83-276 39-206 (457)
32 2id5_A Lingo-1, leucine rich r 99.9 4.6E-24 1.6E-28 230.8 28.8 172 89-274 14-189 (477)
33 4fmz_A Internalin; leucine ric 99.9 4.3E-24 1.5E-28 220.9 26.4 305 82-480 40-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 2.4E-24 8.1E-29 226.6 23.4 154 104-273 41-198 (390)
35 1jl5_A Outer protein YOPM; leu 99.9 8.7E-25 3E-29 233.2 19.3 367 83-626 31-427 (454)
36 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-24 2.8E-28 225.8 23.4 146 106-276 40-185 (457)
37 2id5_A Lingo-1, leucine rich r 99.9 2.9E-23 1E-27 224.5 26.1 314 111-594 14-331 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 1.1E-23 3.6E-28 221.6 20.3 302 84-480 43-350 (390)
39 3oja_B Anopheles plasmodium-re 99.9 2.1E-23 7.3E-28 231.4 23.6 155 104-274 47-205 (597)
40 3oja_B Anopheles plasmodium-re 99.9 1.1E-22 3.9E-27 225.6 20.5 302 84-480 49-356 (597)
41 4fcg_A Uncharacterized protein 99.9 1.2E-21 3.9E-26 200.1 15.8 131 131-274 79-219 (328)
42 3ogk_B Coronatine-insensitive 99.9 7.5E-23 2.6E-27 227.8 7.1 128 130-270 109-252 (592)
43 3ogk_B Coronatine-insensitive 99.9 1.1E-22 3.9E-27 226.4 7.8 440 124-650 64-547 (592)
44 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-21 2.1E-25 195.7 18.5 154 109-279 34-190 (332)
45 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-21 2.1E-25 195.7 17.2 172 87-278 34-210 (332)
46 1xku_A Decorin; proteoglycan, 99.9 2.2E-20 7.6E-25 191.4 21.3 101 134-237 53-156 (330)
47 2p1m_B Transport inhibitor res 99.8 2.4E-22 8.2E-27 223.9 5.5 152 84-236 64-245 (594)
48 4fcg_A Uncharacterized protein 99.8 8.2E-21 2.8E-25 193.8 16.5 173 85-272 80-264 (328)
49 1xku_A Decorin; proteoglycan, 99.8 5.6E-20 1.9E-24 188.4 22.5 148 87-239 32-184 (330)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.1E-25 190.7 15.0 245 86-393 50-304 (313)
51 2z80_A TOLL-like receptor 2, v 99.8 4.6E-20 1.6E-24 190.9 17.4 175 90-277 35-214 (353)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-20 8.6E-25 189.0 13.4 247 108-484 50-306 (313)
53 2p1m_B Transport inhibitor res 99.8 2.7E-21 9.2E-26 215.4 6.7 129 106-236 64-221 (594)
54 1z7x_W Ribonuclease inhibitor; 99.8 7.3E-22 2.5E-26 212.7 0.6 158 108-273 3-182 (461)
55 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.9E-24 179.3 19.1 195 71-279 18-219 (285)
56 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5.1E-24 193.7 17.5 177 87-278 55-235 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 1.7E-19 5.7E-24 192.6 17.5 176 88-278 45-224 (440)
58 3g06_A SSPH2 (leucine-rich rep 99.8 9.3E-19 3.2E-23 192.3 22.3 257 86-445 40-296 (622)
59 3zyj_A Leucine-rich repeat-con 99.8 8.8E-19 3E-23 187.0 19.6 234 71-362 50-290 (440)
60 2z66_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 182.5 13.6 146 90-238 11-162 (306)
61 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.6E-23 187.0 20.0 193 71-279 61-260 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.5E-23 174.1 18.1 175 89-277 14-193 (285)
63 2z66_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 177.8 16.6 195 70-279 13-217 (306)
64 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.9E-23 188.7 20.4 255 108-480 40-295 (622)
65 2z80_A TOLL-like receptor 2, v 99.8 3.2E-18 1.1E-22 177.0 19.5 195 70-278 37-239 (353)
66 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-21 3E-25 204.2 -1.6 180 86-274 3-212 (461)
67 2o6q_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 165.9 19.4 191 86-290 16-212 (270)
68 1h6u_A Internalin H; cell adhe 99.8 1.2E-17 3.9E-22 168.9 19.7 190 83-293 38-227 (308)
69 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 165.0 19.7 192 69-274 21-218 (270)
70 1p9a_G Platelet glycoprotein I 99.8 9.6E-18 3.3E-22 167.7 17.9 192 84-290 8-202 (290)
71 1h6u_A Internalin H; cell adhe 99.7 8.5E-17 2.9E-21 162.5 20.0 190 69-279 46-235 (308)
72 2z62_A TOLL-like receptor 4, v 99.7 3.1E-17 1.1E-21 163.3 16.5 194 83-290 25-231 (276)
73 2z62_A TOLL-like receptor 4, v 99.7 6.6E-17 2.3E-21 160.9 18.7 178 90-279 11-195 (276)
74 1h6t_A Internalin B; cell adhe 99.7 5.1E-17 1.7E-21 162.6 17.9 175 83-278 43-217 (291)
75 3rfs_A Internalin B, repeat mo 99.7 6.9E-17 2.4E-21 160.2 18.6 178 82-274 37-218 (272)
76 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-19 2.2E-23 179.1 3.9 106 126-239 27-133 (317)
77 3m19_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 158.7 17.5 176 86-275 14-193 (251)
78 3o53_A Protein LRIM1, AGAP0063 99.7 2.5E-18 8.5E-23 174.8 6.9 239 86-395 34-277 (317)
79 2xwt_C Thyrotropin receptor; s 99.7 2E-17 7E-22 160.8 12.7 198 76-290 23-233 (239)
80 1p9a_G Platelet glycoprotein I 99.7 9.5E-17 3.2E-21 160.5 16.7 186 71-273 17-207 (290)
81 2xwt_C Thyrotropin receptor; s 99.7 3.4E-17 1.2E-21 159.2 12.0 141 95-239 20-169 (239)
82 1wwl_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 167.1 10.8 108 131-238 93-213 (312)
83 3m19_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 151.3 18.3 168 69-239 19-192 (251)
84 3rfs_A Internalin B, repeat mo 99.7 6.2E-16 2.1E-20 153.3 18.1 167 71-239 48-218 (272)
85 1m9s_A Internalin B; cell inva 99.7 2.8E-16 9.6E-21 172.4 15.0 176 82-278 39-214 (605)
86 1h6t_A Internalin B; cell adhe 99.7 5.7E-16 1.9E-20 155.0 15.3 180 93-293 31-210 (291)
87 3oja_A Leucine-rich immune mol 99.7 1.8E-16 6.2E-21 170.6 11.6 211 86-363 34-249 (487)
88 3e6j_A Variable lymphocyte rec 99.7 1.6E-15 5.6E-20 145.9 16.8 149 88-239 21-172 (229)
89 4ezg_A Putative uncharacterize 99.7 1.1E-15 3.6E-20 143.6 14.6 150 83-239 41-194 (197)
90 2ast_B S-phase kinase-associat 99.6 2.5E-16 8.5E-21 161.7 10.4 103 133-236 70-178 (336)
91 3oja_A Leucine-rich immune mol 99.6 4.5E-16 1.5E-20 167.5 12.2 189 69-280 39-233 (487)
92 2v70_A SLIT-2, SLIT homolog 2 99.6 1.9E-15 6.5E-20 144.4 14.9 149 89-239 14-166 (220)
93 4ay9_X Follicle-stimulating ho 99.6 1.5E-15 5.3E-20 156.4 15.2 196 71-279 16-220 (350)
94 2v9t_B SLIT homolog 2 protein 99.6 2.1E-15 7.3E-20 144.1 15.0 148 89-239 14-165 (220)
95 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.3E-20 143.1 13.1 150 106-274 42-194 (197)
96 2o6s_A Variable lymphocyte rec 99.6 1.6E-15 5.3E-20 144.0 13.2 148 89-239 10-161 (208)
97 1wwl_A Monocyte differentiatio 99.6 2.2E-15 7.7E-20 152.5 15.2 189 85-290 94-303 (312)
98 4ay9_X Follicle-stimulating ho 99.6 1.7E-15 5.9E-20 156.1 13.5 148 89-238 12-166 (350)
99 4glp_A Monocyte differentiatio 99.6 2.4E-16 8.2E-21 159.6 6.9 80 133-212 91-180 (310)
100 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.3E-20 148.3 13.4 169 87-277 20-188 (263)
101 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.9E-20 156.0 10.3 175 86-272 70-258 (336)
102 4glp_A Monocyte differentiatio 99.6 6.5E-15 2.2E-19 149.0 14.3 190 85-290 90-301 (310)
103 1xeu_A Internalin C; cellular 99.6 1.2E-14 4.2E-19 142.9 15.4 149 82-239 37-185 (263)
104 1m9s_A Internalin B; cell inva 99.6 6E-15 2.1E-19 161.8 13.2 181 92-293 27-207 (605)
105 2xot_A Amphoterin-induced prot 99.6 1E-14 3.5E-19 150.9 13.5 171 89-273 21-201 (361)
106 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.8E-19 150.6 13.1 168 69-239 23-202 (361)
107 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 136.4 13.2 159 74-242 17-181 (208)
108 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.1E-19 137.2 13.0 147 111-273 14-164 (220)
109 2ca6_A RAN GTPase-activating p 99.5 3E-15 1E-19 156.6 7.0 180 85-273 31-256 (386)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 5.3E-14 1.8E-18 134.3 13.5 147 111-273 14-165 (220)
111 2ell_A Acidic leucine-rich nuc 99.5 4.8E-14 1.6E-18 128.6 12.0 137 133-278 24-164 (168)
112 3e6j_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 134.3 13.7 148 110-274 21-172 (229)
113 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.5E-18 148.8 16.8 176 86-290 59-237 (571)
114 2je0_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 126.1 9.5 81 130-211 39-123 (149)
115 2ell_A Acidic leucine-rich nuc 99.5 7.5E-14 2.6E-18 127.3 10.4 127 109-238 25-159 (168)
116 3cvr_A Invasion plasmid antige 99.5 3.2E-13 1.1E-17 146.4 16.8 173 69-275 64-244 (571)
117 3goz_A Leucine-rich repeat-con 99.5 1.3E-14 4.6E-19 150.2 5.4 184 85-277 21-241 (362)
118 3goz_A Leucine-rich repeat-con 99.5 2.3E-14 7.8E-19 148.4 6.4 152 114-274 4-180 (362)
119 4b8c_D Glucose-repressible alc 99.5 8.4E-14 2.9E-18 156.8 10.6 154 85-242 172-332 (727)
120 2je0_A Acidic leucine-rich nuc 99.5 1.5E-13 5.2E-18 122.5 10.0 130 131-269 15-148 (149)
121 2wfh_A SLIT homolog 2 protein 99.5 3.7E-13 1.3E-17 125.4 12.5 123 112-239 14-139 (193)
122 1a9n_A U2A', U2A'; complex (nu 99.4 6.5E-14 2.2E-18 128.7 5.8 128 106-237 17-151 (176)
123 2ca6_A RAN GTPase-activating p 99.4 8.2E-14 2.8E-18 145.8 6.5 182 84-275 58-288 (386)
124 1w8a_A SLIT protein; signaling 99.4 5.6E-13 1.9E-17 124.2 11.2 105 134-239 30-139 (192)
125 1w8a_A SLIT protein; signaling 99.4 9E-13 3.1E-17 122.8 11.9 123 89-212 11-137 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.4 4.2E-13 1.4E-17 123.2 9.2 136 129-274 15-153 (176)
127 2wfh_A SLIT homolog 2 protein 99.4 4E-12 1.4E-16 118.3 13.6 121 89-212 13-137 (193)
128 4b8c_D Glucose-repressible alc 99.3 1.7E-13 5.7E-18 154.4 2.7 131 106-239 222-354 (727)
129 2o6r_A Variable lymphocyte rec 99.3 7.7E-12 2.6E-16 114.9 13.3 106 133-239 28-137 (177)
130 2o6r_A Variable lymphocyte rec 99.3 9.1E-12 3.1E-16 114.4 13.7 123 88-212 9-135 (177)
131 1ds9_A Outer arm dynein; leuci 99.3 3.3E-14 1.1E-18 133.5 -4.0 136 128-267 43-180 (198)
132 1dce_A Protein (RAB geranylger 99.3 6.5E-12 2.2E-16 137.0 12.6 123 134-268 442-567 (567)
133 1dce_A Protein (RAB geranylger 99.3 8.2E-12 2.8E-16 136.1 12.4 190 86-289 349-566 (567)
134 2r9u_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 109.6 11.2 101 136-239 15-118 (174)
135 3g39_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 108.8 11.2 102 135-239 11-115 (170)
136 1ds9_A Outer arm dynein; leuci 99.2 2.2E-13 7.5E-18 127.9 -4.4 142 87-232 24-180 (198)
137 2r9u_A Variable lymphocyte rec 99.2 1.2E-10 4.3E-15 106.1 11.9 104 89-194 15-121 (174)
138 3g39_A Variable lymphocyte rec 99.1 3E-10 1E-14 103.3 11.9 101 89-191 12-115 (170)
139 3sb4_A Hypothetical leucine ri 99.1 1.5E-10 5.1E-15 117.9 9.8 188 85-288 48-326 (329)
140 3un9_A NLR family member X1; l 98.9 3.9E-10 1.3E-14 116.2 2.0 155 84-239 70-252 (372)
141 2ifg_A High affinity nerve gro 98.9 5.7E-09 1.9E-13 107.1 10.4 100 137-239 12-116 (347)
142 3un9_A NLR family member X1; l 98.8 3.5E-10 1.2E-14 116.6 -0.3 162 107-276 71-254 (372)
143 3sb4_A Hypothetical leucine ri 98.8 1.6E-08 5.4E-13 102.8 10.5 167 85-267 100-327 (329)
144 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.4E-13 102.7 9.3 84 129-212 27-114 (347)
145 4fdw_A Leucine rich hypothetic 98.5 9.9E-07 3.4E-11 91.6 15.6 186 87-292 158-354 (401)
146 4fdw_A Leucine rich hypothetic 98.5 2.4E-06 8.3E-11 88.7 16.5 117 109-233 136-255 (401)
147 3e4g_A ATP synthase subunit S, 98.4 2.5E-07 8.4E-12 82.6 5.3 90 531-630 61-154 (176)
148 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4.1E-12 84.7 2.9 92 557-656 61-154 (176)
149 2ra8_A Uncharacterized protein 98.3 4.6E-07 1.6E-11 92.4 6.3 180 85-273 106-319 (362)
150 4fs7_A Uncharacterized protein 98.2 3.8E-05 1.3E-09 79.8 17.5 61 123-185 61-124 (394)
151 4fs7_A Uncharacterized protein 98.1 8E-05 2.7E-09 77.3 18.8 124 105-236 68-195 (394)
152 1io0_A Tropomodulin; LRR prote 98.1 2E-06 6.8E-11 78.9 4.9 109 128-238 31-163 (185)
153 2ra8_A Uncharacterized protein 98.0 7.7E-06 2.6E-10 83.3 8.0 151 83-239 136-320 (362)
154 1io0_A Tropomodulin; LRR prote 98.0 5.3E-06 1.8E-10 76.0 5.9 107 106-212 34-162 (185)
155 2a5y_B CED-4; apoptosis; HET: 98.0 9.7E-07 3.3E-11 96.0 -0.2 59 4-66 407-472 (549)
156 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.6E-10 76.5 6.8 62 130-191 167-233 (267)
157 3rw6_A Nuclear RNA export fact 97.8 4.5E-06 1.5E-10 80.5 0.6 58 154-212 168-231 (267)
158 4gt6_A Cell surface protein; l 97.2 0.017 5.8E-07 59.6 19.7 120 109-235 65-191 (394)
159 4gt6_A Cell surface protein; l 96.5 0.0099 3.4E-07 61.4 10.7 79 152-233 261-341 (394)
160 4h09_A Hypothetical leucine ri 96.0 0.047 1.6E-06 55.9 12.5 102 129-234 213-318 (379)
161 4h09_A Hypothetical leucine ri 96.0 0.037 1.3E-06 56.7 11.7 125 106-236 215-343 (379)
162 3rfe_A Platelet glycoprotein I 94.9 0.048 1.7E-06 45.9 6.5 51 137-189 12-66 (130)
163 3rfe_A Platelet glycoprotein I 94.8 0.029 9.9E-07 47.3 4.9 55 182-239 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.6 0.038 1.3E-06 50.0 5.4 58 153-210 67-135 (197)
165 1pgv_A TMD-1, tropomodulin TMD 94.4 0.043 1.5E-06 49.7 5.2 59 130-188 67-136 (197)
166 1vt4_I APAF-1 related killer D 92.9 0.048 1.6E-06 61.8 3.3 46 3-59 392-437 (1221)
167 3sfz_A APAF-1, apoptotic pepti 92.0 0.091 3.1E-06 63.1 4.5 41 25-65 410-452 (1249)
168 1z6t_A APAF-1, apoptotic prote 79.2 1.3 4.4E-05 48.1 4.2 38 25-62 410-449 (591)
169 2lz0_A Uncharacterized protein 22.4 67 0.0023 24.9 3.3 45 190-236 8-53 (100)
170 2lz0_A Uncharacterized protein 21.3 1.1E+02 0.0039 23.5 4.5 41 124-165 11-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-34 Score=320.77 Aligned_cols=510 Identities=17% Similarity=0.126 Sum_probs=338.9
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+.+.+.....+|. ..+.++++|++++|.+..++. ...+++|++|++++|.+. .+++..|.++++||+|++++|.+.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 4444555555554 456889999999999987765 338999999999999877 565666899999999999999998
Q ss_pred cC-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCc--cccHHHhcCCCCCEEeccCCCCCcccCccc
Q 005639 147 SL-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (686)
Q Consensus 147 ~l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~ 221 (686)
.+ |..++++++|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhh
Confidence 86 7889999999999999999887 477999999999999999888 578889999999999999987 77776655
Q ss_pred ccCCCCCc----EEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc--ccCccc-cccCccEEEEEEcC
Q 005639 222 LSGLSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM--ILPKGL-FSKKLERYKIFIGD 294 (686)
Q Consensus 222 i~~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~ 294 (686)
++.+++|+ +|++++|.+....+ ..+ ...+|+.|++++|... ..+..+ ..+.++.+.+....
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~-----------~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQD-----------QAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECT-----------TTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred hhhhhccccccceeeccCCCcceeCc-----------ccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 67666665 79998887762221 222 2236888888877643 222222 12555555554332
Q ss_pred ccCC----------CCccc--cceEEEEecCCCchHHH--HHHhhccceeecccccCccccccccccccccccceEeecc
Q 005639 295 EWDW----------SGNYK--NKRVLKLKLYTSNVDEV--IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQN 360 (686)
Q Consensus 295 ~~~~----------~~~~~--~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 360 (686)
.... ..... .++.+.+.....+.... ...+++|+.|++.++.. .... .+..+++|++|++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~---~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE---DVPKHFKWQSLSIIR 316 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC---CCCTTCCCSEEEEES
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh---hccccccCCEEEccc
Confidence 1110 00011 23444443332221111 34567788888877654 2222 356688889999988
Q ss_pred ccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCcccc-chhhhcCCCCCcEEE
Q 005639 361 NPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIF-SFSFVRGLPQLQTLN 439 (686)
Q Consensus 361 ~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~-~~~~~~~l~~L~~L~ 439 (686)
|.. ..+| .. .+++|+.|.+.++..+..+ ..+.+++|+.|++++| +++..+ ....+..+++|++|+
T Consensus 317 n~l-~~lp------~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 317 CQL-KQFP------TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCC-SSCC------CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEE
T ss_pred ccC-cccc------cC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeE
Confidence 874 4433 12 6788888888887544322 3456888888888885 445442 112567788888888
Q ss_pred EeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccccccccccc
Q 005639 440 VINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDT 519 (686)
Q Consensus 440 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 519 (686)
+++|. +..++. ....+++|+.|+++++.--...+... -...+.|+.+....- ...+
T Consensus 383 L~~n~-l~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n---~l~~----- 438 (606)
T 3vq2_A 383 LSFNG-AIIMSA------------NFMGLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYLDISYT---NTKI----- 438 (606)
T ss_dssp CCSCS-EEEECC------------CCTTCTTCCEEECTTSEEESTTTTTT---TTTCTTCCEEECTTS---CCEE-----
T ss_pred CCCCc-cccchh------------hccCCCCCCeeECCCCccCCccChhh---hhccccCCEEECcCC---CCCc-----
Confidence 88765 444442 23457778888887764222211000 011123333322111 0000
Q ss_pred ccccccccccCCcccEEeecccccce-ecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccce
Q 005639 520 LMPFFNEKVVFPNLETLELCAISTEK-IWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLES 598 (686)
Q Consensus 520 ~~~~~~~~~~~~~L~~L~i~~~~l~~-~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~ 598 (686)
........+++|++|++++|.++. +....+. .+++|++|++++| ++..++| ..+..+++|++|++++| .++.
T Consensus 439 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~ 511 (606)
T 3vq2_A 439 --DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN-NLLF 511 (606)
T ss_dssp --CCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSC
T ss_pred --cchhhhcCCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC-cCCC
Confidence 011224568999999999997775 3333344 6899999999997 7777745 44478999999999999 5665
Q ss_pred eecccccccccccccccccceeecccCCCcCeeecCCCcCCCC-CccEEEEecCC
Q 005639 599 IVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWP-MLKKLEVYGCD 652 (686)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~-~L~~L~I~~C~ 652 (686)
+.. .....+++|+.|++++|. ++.+|.... .++ +|++|+++++|
T Consensus 512 ~~~-------~~~~~l~~L~~L~l~~N~-l~~~p~~~~--~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 512 LDS-------SHYNQLYSLSTLDCSFNR-IETSKGILQ--HFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEG-------GGTTTCTTCCEEECTTSC-CCCEESCGG--GSCTTCCEEECCSCC
T ss_pred cCH-------HHccCCCcCCEEECCCCc-CcccCHhHh--hhcccCcEEEccCCC
Confidence 521 234578899999999985 888887632 345 59999998865
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-33 Score=312.68 Aligned_cols=504 Identities=15% Similarity=0.124 Sum_probs=353.8
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~ 166 (686)
-++++.++.++..+|.... +++++|++++|.+. .++...|.++++||+|++++|.+..+ |..++++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4678999999999987554 88999999999887 66666689999999999999999886 667899999999999999
Q ss_pred CCCC--chhhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCc--ccCcccccCCCCCcEEEcCCCccccc
Q 005639 167 ALGD--IAIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK--VIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 167 ~l~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~--~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
.++. |..++++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 9988 788999999999999999999887 569999999999999988 55 46776 89999999999999987632
Q ss_pred cccccccccccchhhhccCCC-CcEEEEEecCCcccCccccc-cCccEEEEEEcCcc-----CCCCccccceEEEEecCC
Q 005639 242 FEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGLFS-KKLERYKIFIGDEW-----DWSGNYKNKRVLKLKLYT 314 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~~~~l~~l~l~~~~ 314 (686)
. ...+..+.+++. ++.|++++|.+..++...+. .+|+.|.+..+... .+......++.+.+....
T Consensus 169 ~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 169 T--------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp C--------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred C--------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 2 223455555554 66899999998888876643 57888887654321 222334455555543211
Q ss_pred C-----chHHHHHHhh-----ccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccch
Q 005639 315 S-----NVDEVIMQLK-----GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLES 384 (686)
Q Consensus 315 ~-----~~~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~ 384 (686)
. +.......+. .++.+.+........... .+..+++|+.|++.++.. +.++ ....+++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~-~~l~------~l~~~~~L~~ 311 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVSI-KYLE------DVPKHFKWQS 311 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCCC-CCCC------CCCTTCCCSE
T ss_pred cccCCcccccChHHhhhhhhccHhheecccccccccccc--ccccCCCCCEEEecCccc-hhhh------hccccccCCE
Confidence 0 0000001112 233444433333333322 257799999999999863 3332 3456789999
Q ss_pred hhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCc
Q 005639 385 LVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVD 464 (686)
Q Consensus 385 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 464 (686)
|.+.++.- ..++ .. .+++|++|++.+|..+... .+..+++|++|++++|. +..+... ...
T Consensus 312 L~l~~n~l-~~lp----~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~---------~~~ 371 (606)
T 3vq2_A 312 LSIIRCQL-KQFP----TL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCC---------SYS 371 (606)
T ss_dssp EEEESCCC-SSCC----CC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEEC---------CHH
T ss_pred EEcccccC-cccc----cC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcch---------hhh
Confidence 99999864 4442 22 7899999999999766655 34689999999999864 3333110 012
Q ss_pred ceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccc
Q 005639 465 KIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE 544 (686)
Q Consensus 465 ~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~ 544 (686)
...+++|++|+++++. ++.++.. -...+.|+.+..... .+.+ .........+++|++|++++|.++
T Consensus 372 ~~~~~~L~~L~L~~n~-l~~~~~~----~~~l~~L~~L~l~~n---~l~~------~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNG-AIIMSAN----FMGLEELQHLDFQHS---TLKR------VTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp HHCCSCCCEEECCSCS-EEEECCC----CTTCTTCCEEECTTS---EEES------TTTTTTTTTCTTCCEEECTTSCCE
T ss_pred hccCCcccEeECCCCc-cccchhh----ccCCCCCCeeECCCC---ccCC------ccChhhhhccccCCEEECcCCCCC
Confidence 4578999999999875 4444421 111233444333211 1111 001123457899999999999888
Q ss_pred eecccCccccccCCccEEEEecCCCCcc-ccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecc
Q 005639 545 KIWCNQLAAVYSQNLTRLIVHGCEKLKY-LFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLW 623 (686)
Q Consensus 545 ~~~~~~~~~~~l~~L~~L~l~~C~~L~~-l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~ 623 (686)
......+. .+++|++|++++| ++.. ..|. .+..+++|++|++++| .++.+.. .....+++|++|+++
T Consensus 438 ~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 438 IDFDGIFL--GLTSLNTLKMAGN-SFKDNTLSN-VFANTTNLTFLDLSKC-QLEQISW-------GVFDTLHRLQLLNMS 505 (606)
T ss_dssp ECCTTTTT--TCTTCCEEECTTC-EEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECC
T ss_pred ccchhhhc--CCCCCCEEECCCC-cCCCcchHH-hhccCCCCCEEECCCC-cCCccCh-------hhhcccccCCEEECC
Confidence 76555555 7899999999997 5554 3243 3478999999999999 5666521 234578999999999
Q ss_pred cCCCcCee-ecCCCcCCCCCccEEEEecCCCceecccccc
Q 005639 624 NLSELKTF-YPGTHTSKWPMLKKLEVYGCDKVKIFTSRFL 662 (686)
Q Consensus 624 ~c~~L~~l-~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~ 662 (686)
+|. ++.+ |.... .+++|++|++++|. ++.+|.+..
T Consensus 506 ~N~-l~~~~~~~~~--~l~~L~~L~l~~N~-l~~~p~~~~ 541 (606)
T 3vq2_A 506 HNN-LLFLDSSHYN--QLYSLSTLDCSFNR-IETSKGILQ 541 (606)
T ss_dssp SSC-CSCEEGGGTT--TCTTCCEEECTTSC-CCCEESCGG
T ss_pred CCc-CCCcCHHHcc--CCCcCCEEECCCCc-CcccCHhHh
Confidence 985 5555 43332 45999999999985 778887643
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.4e-32 Score=304.68 Aligned_cols=540 Identities=15% Similarity=0.114 Sum_probs=301.6
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+.+.+.....+|. ..+.++++|++++|.+..++.. ..+++|++|++++|.+. .+++..|.++++||+|++++|.+.
T Consensus 9 ~~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 9 ADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccC
Confidence 3344444555553 3568999999999999888753 38899999999999887 455566899999999999999999
Q ss_pred cCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCcccCcccc
Q 005639 147 SLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 147 ~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
.+|. .++++++|++|++++|.+.. +..++++++|++|++++|.+...+ ..++++++|++|++++|. ++.+++..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHh
Confidence 9887 58999999999999999888 467999999999999999888654 458899999999999987 777776434
Q ss_pred c--CCCCCcEEEcCCCcccccccccccccc-------------ccchhh---hccCCCCcEEEEEecCCcccCccccc--
Q 005639 223 S--GLSRLEDLYMGNTSVKWEFEGLNVGRS-------------NASLQE---LKLLSHLTTLEIQICDAMILPKGLFS-- 282 (686)
Q Consensus 223 ~--~L~~L~~L~l~~~~~~~~~~~~~~~~~-------------~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~-- 282 (686)
+ .+++|++|++++|.+....+..-.... ...... ....++|+.|+++++.+...++....
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 3 568999999999876533221000000 000000 00225677777777665554433221
Q ss_pred --cCccEEEEEEcCc----cCCCCccccceEEEEecCCC--chHHHHHHhhccceeecccccCccc-----cc--ccccc
Q 005639 283 --KKLERYKIFIGDE----WDWSGNYKNKRVLKLKLYTS--NVDEVIMQLKGIEELYLDEVPGIKN-----VL--YDLDI 347 (686)
Q Consensus 283 --~~L~~L~l~~~~~----~~~~~~~~~l~~l~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-----~~--~~~~~ 347 (686)
++|+.|++..+.. ..+....+.++.|++..+.- +.......+++|+.|++.++..... +. ....+
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 3477777654432 12334456777777765421 1222233456677777654321110 00 11124
Q ss_pred ccccccceEeeccccCceeEEecccccccccccccchhhccCCc-chhhhhcCCCCccccCCccEEEEecCCCCccccch
Q 005639 348 EGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI-HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSF 426 (686)
Q Consensus 348 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 426 (686)
..+++|++|+++++. +..++. .....+++|++|+++++. .+..+....+.....++|+.|++++|. +..+++
T Consensus 326 ~~l~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~- 398 (680)
T 1ziw_A 326 QWLKCLEHLNMEDND-IPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIES- 398 (680)
T ss_dssp TTCTTCCEEECCSCC-BCCCCT----TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECT-
T ss_pred ccCCCCCEEECCCCc-cCCCCh----hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeECh-
Confidence 556777777777664 222111 123345666666666543 111111111111112456666665542 333332
Q ss_pred hhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCcccccccccccccc---------------
Q 005639 427 SFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKT--------------- 491 (686)
Q Consensus 427 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~--------------- 491 (686)
..+..+++|++|+++++.--..++. .....+++|++|+++++. ++.+......
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTG-----------QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCS-----------GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCC
T ss_pred hhhhCCCCCCEEeCCCCcCccccCc-----------ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccc
Confidence 2344556666666655432222221 011233444444444432 1111100000
Q ss_pred --------chhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCcc------ccccC
Q 005639 492 --------SAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLA------AVYSQ 557 (686)
Q Consensus 492 --------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~------~~~l~ 557 (686)
.-...+.|+.+....- .+.+. .......+++|+.|++++|.++.+|....+ ...++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N---~l~~i-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNN---NIANI-------NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSS---CCCCC-------CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cccccCCcccccCCCCCEEECCCC---CCCcC-------ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 0000111222211100 00000 001123566777777777766665443211 12567
Q ss_pred CccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCc
Q 005639 558 NLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHT 637 (686)
Q Consensus 558 ~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~ 637 (686)
+|++|+++++ +++.+ |...+..+++|++|+++++ .++.++. .....+++|+.|+++++ +++.++.....
T Consensus 537 ~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 605 (680)
T 1ziw_A 537 HLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGLN-NLNTLPA-------SVFNNQVSLKSLNLQKN-LITSVEKKVFG 605 (680)
T ss_dssp TCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-------TTTTTCTTCCEEECTTS-CCCBCCHHHHH
T ss_pred CCCEEECCCC-CCCCC-CHHHcccccCcceeECCCC-CCCcCCH-------hHhCCCCCCCEEECCCC-cCCccChhHhc
Confidence 7777777774 66666 3344466777777777766 4655521 12235677777777775 56665543211
Q ss_pred CCCCCccEEEEecC
Q 005639 638 SKWPMLKKLEVYGC 651 (686)
Q Consensus 638 ~~~~~L~~L~I~~C 651 (686)
..+++|++|+++++
T Consensus 606 ~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 606 PAFRNLTELDMRFN 619 (680)
T ss_dssp HHHTTCSEEECTTC
T ss_pred ccccccCEEEccCC
Confidence 13477788887764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-33 Score=316.50 Aligned_cols=458 Identities=16% Similarity=0.049 Sum_probs=275.5
Q ss_pred hcCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccCh-hhhhCCCCCcEEEecCCCCcc-CCccc-CCCCCCc
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPN-HVFAGMSNLRGLALSNMQFLS-LPSLF-HLPLNLQ 159 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~-~~f~~l~~Lr~L~L~~~~~~~-lp~~i-~~l~~L~ 159 (686)
..+.++.++++.+.+..++... .+++|++|++++|.+.+.+|. ..|.++++|++|++++|.+.. .|..+ .++++|+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 3467777777777765555544 889999999999988766665 136889999999999998764 55554 7899999
Q ss_pred EEEccCCCCCC--chh---hcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 160 TLCLDRCALGD--IAI---IGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 160 ~L~l~~~~l~~--~~~---i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
+|++++|.++. +.. ++++++|++|++++|.+..... +.++++|++|++++|.....+|. ++++++|++|+++
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDIS 231 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECc
Confidence 99999999887 444 7889999999999997774432 37889999999999874343444 8899999999999
Q ss_pred CCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcC----ccCCCCc-cccceEEE
Q 005639 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD----EWDWSGN-YKNKRVLK 309 (686)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~-~~~l~~l~ 309 (686)
+|.+. +..+..++.+++|+.|++++|.+....+....++|+.|.+..+. .+.+... .+.++.|+
T Consensus 232 ~n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 232 GNKLS-----------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SSCCC-----------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCcCC-----------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 88765 23446788888899999888876544433456788888876443 2233333 36788888
Q ss_pred EecCCC--chHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEeccccccccccc-ccchhh
Q 005639 310 LKLYTS--NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFL-LLESLV 386 (686)
Q Consensus 310 l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~-~L~~L~ 386 (686)
+..+.- ........+++|+.|++.++.....+.. ..+..+++|++|+++++.....+|. ....++ +|+.|+
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~-----~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLTLD 374 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT-----THHHHTTTCSEEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccH-----HHHhhhcCCcEEE
Confidence 775421 1112234567788888877654323322 1246678888888887753212211 123344 777777
Q ss_pred ccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcce
Q 005639 387 LHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKI 466 (686)
Q Consensus 387 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 466 (686)
++++.--..+ ........+++|++|++.+|.-...+|. .+..+++|++|++++|.--..++. ...
T Consensus 375 Ls~N~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~------------~l~ 439 (768)
T 3rgz_A 375 LSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPS------------SLG 439 (768)
T ss_dssp CCSSEEEEEC-CTTTTCSTTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCG------------GGG
T ss_pred ccCCCcCCCc-ChhhhhcccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccH------------HHh
Confidence 7765421111 1111112256777777777543323333 456677777777776543223332 234
Q ss_pred eecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccccccee
Q 005639 467 EFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (686)
Q Consensus 467 ~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~ 546 (686)
.+++|+.|+++++.--..++... ...+.|+.+....- .+.+ .....+..+++|+.|++++|.++..
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~N---~l~~-------~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQEL----MYVKTLETLILDFN---DLTG-------EIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSS---CCCS-------CCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCCCCEEECCCCcccCcCCHHH----cCCCCceEEEecCC---cccC-------cCCHHHhcCCCCCEEEccCCccCCc
Confidence 45666666666654322222211 11122222222110 0000 0111234556666666666655533
Q ss_pred cccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEeccc
Q 005639 547 WCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (686)
Q Consensus 547 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~ 594 (686)
....+. .+++|++|++++| ++....|.. +..+++|+.|++++|+
T Consensus 506 ~p~~~~--~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 506 IPKWIG--RLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCGGGG--GCTTCCEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSE
T ss_pred CChHHh--cCCCCCEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCc
Confidence 222232 4566666666665 444332433 2556666666666653
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-31 Score=300.25 Aligned_cols=506 Identities=14% Similarity=0.099 Sum_probs=306.5
Q ss_pred EecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc
Q 005639 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
.+.+.....+|. ..+..+++|++++|.+..+++ ...+++|++|++++|.+. .+.+..|.++++|++|++++|.+..
T Consensus 18 ~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 18 NCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp ECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSE
T ss_pred ECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccc
Confidence 344444555553 467789999999999987754 338999999999999887 4555668999999999999999987
Q ss_pred C-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCcccCccccc
Q 005639 148 L-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (686)
Q Consensus 148 l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~ 223 (686)
+ |..++++++|++|++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhh
Confidence 4 7789999999999999999988 678999999999999999998763 234559999999999987 7788766689
Q ss_pred CCCCCc--EEEcCCCcccccccccccc---------ccccchhhhccCCCCcEEEEEecCC-----cccCcccc----cc
Q 005639 224 GLSRLE--DLYMGNTSVKWEFEGLNVG---------RSNASLQELKLLSHLTTLEIQICDA-----MILPKGLF----SK 283 (686)
Q Consensus 224 ~L~~L~--~L~l~~~~~~~~~~~~~~~---------~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~----~~ 283 (686)
.+++|+ +|++++|.+....+..... ........+..+.++....+..... ..++...+ ..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 999999 8999998876433321100 0000111122222222212211110 01111110 01
Q ss_pred CccEEEEEEcCcc----CCCCccccceEEEEecCC--CchHHHHHHhhccceeecccccCccccccccccccccccceEe
Q 005639 284 KLERYKIFIGDEW----DWSGNYKNKRVLKLKLYT--SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLH 357 (686)
Q Consensus 284 ~L~~L~l~~~~~~----~~~~~~~~l~~l~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 357 (686)
+++.+.+..+... ......++++.|++..+. .+++. ...+++|+.|++.++....... ..+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGG--GCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCch--hhhhccCcCCEEE
Confidence 3444444322211 112334556666665431 11111 1235677888887765433222 2356788888888
Q ss_pred eccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcE
Q 005639 358 VQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQT 437 (686)
Q Consensus 358 l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~ 437 (686)
++++.....++. .....+++|++|+++++. +..........+.+++|++|++++|. +..+++ ..+..+++|++
T Consensus 332 l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 404 (606)
T 3t6q_A 332 IKGNTKRLELGT----GCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKT-EAFKECPQLEL 404 (606)
T ss_dssp CCSCSSCCBCCS----STTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECT-TTTTTCTTCSE
T ss_pred CCCCCcccccch----hhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCH-HHhcCCccCCe
Confidence 888764322211 124457788888887754 33222112334567888888888854 455543 25667888888
Q ss_pred EEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccccccccc
Q 005639 438 LNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDEC 517 (686)
Q Consensus 438 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 517 (686)
|++++|.--...+. .....+++|++|+++++.- +....
T Consensus 405 L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l-~~~~~------------------------------ 442 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQ-----------SPFQNLHLLKVLNLSHSLL-DISSE------------------------------ 442 (606)
T ss_dssp EECTTCCEECCTTC-----------CTTTTCTTCCEEECTTCCC-BTTCT------------------------------
T ss_pred EECCCCcCCCcccc-----------hhhhCcccCCEEECCCCcc-CCcCH------------------------------
Confidence 88887653222211 1134578888888887642 11110
Q ss_pred ccccccccccccCCcccEEeeccccccee--cc-cCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEeccc
Q 005639 518 DTLMPFFNEKVVFPNLETLELCAISTEKI--WC-NQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (686)
Q Consensus 518 ~~~~~~~~~~~~~~~L~~L~i~~~~l~~~--~~-~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~ 594 (686)
..+..+++|++|++++|.++.. +. .... .+++|++|++++| ++..++|. .+..+++|++|++++|
T Consensus 443 -------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N- 510 (606)
T 3t6q_A 443 -------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFC-DLSSIDQH-AFTSLKMMNHVDLSHN- 510 (606)
T ss_dssp -------TTTTTCTTCCEEECTTCBCGGGEECSSCGGG--GCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-
T ss_pred -------HHHhCCCCCCEEECCCCCCCccccccchhhc--cCCCccEEECCCC-ccCccChh-hhccccCCCEEECCCC-
Confidence 1123467777777777765531 11 1122 5677777777775 56666443 3356777777777777
Q ss_pred ccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCC
Q 005639 595 SLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
.++.+. ......+++| .|+++++. ++.++.... ..+++|++|+++++|
T Consensus 511 ~l~~~~-------~~~l~~l~~L-~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 511 RLTSSS-------IEALSHLKGI-YLNLASNH-ISIILPSLL-PILSQQRTINLRQNP 558 (606)
T ss_dssp CCCGGG-------GGGGTTCCSC-EEECCSSC-CCCCCGGGH-HHHHTSSEEECTTCC
T ss_pred ccCcCC-------hhHhCccccc-EEECcCCc-ccccCHhhc-ccCCCCCEEeCCCCC
Confidence 344331 1123355666 77777753 444433211 134677777777765
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-31 Score=297.04 Aligned_cols=502 Identities=17% Similarity=0.149 Sum_probs=323.6
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~ 166 (686)
.++++..+..+..+|... .+.+++|++++|.+. .+++..|.++++||+|++++|.+..+ |..++++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 457888888888888755 347999999999987 56566689999999999999999874 778999999999999999
Q ss_pred CCCC--chhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 167 ALGD--IAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 167 ~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence 9987 77899999999999999999987 5569999999999999988 776642225669999999999998762
Q ss_pred cccccccccchhhhccCCCCc--EEEEEecCCcccCccccc-cCccEEEEEEcCcc-CCCCccccc--eEEEEecCC---
Q 005639 244 GLNVGRSNASLQELKLLSHLT--TLEIQICDAMILPKGLFS-KKLERYKIFIGDEW-DWSGNYKNK--RVLKLKLYT--- 314 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~~~l--~~l~l~~~~--- 314 (686)
.....++.+++|+ .|++++|.+..+++..+. .+|+.+.+..+... .+......+ ..+.+....
T Consensus 168 --------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 168 --------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp --------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred --------cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccc
Confidence 3346788889998 788888888777665543 56666665432210 000011111 122221111
Q ss_pred --CchHHHHHHh--hccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCC
Q 005639 315 --SNVDEVIMQL--KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (686)
Q Consensus 315 --~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 390 (686)
.+.......+ .+++.|++.++.... ... ..++.+++|++|+++++. ++.+|. ....+++|++|.++++
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~l~~n~-l~~lp~-----~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFN-ISS-NTFHCFSGLQELDLTATH-LSELPS-----GLVGLSTLKKLVLSAN 311 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCT-TTTTTCTTCSEEECTTSC-CSCCCS-----SCCSCTTCCEEECTTC
T ss_pred ccccChhHhchhhcCceeEEEeecCccCc-cCH-HHhccccCCCEEeccCCc-cCCCCh-----hhcccccCCEEECccC
Confidence 1111111111 167777777664322 222 125678888888888875 444332 2355788888888876
Q ss_pred cchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecc
Q 005639 391 IHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQ 470 (686)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 470 (686)
. +..+. +.....+++|++|++.+|.....++. ..+..+++|++|++++|. +..+.. .......+++
T Consensus 312 ~-l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~~~l~~ 377 (606)
T 3t6q_A 312 K-FENLC--QISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDD-IETSDC---------CNLQLRNLSH 377 (606)
T ss_dssp C-CSBGG--GGCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSC-CCEEEE---------STTTTTTCTT
T ss_pred C-cCcCc--hhhhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCc-cccccC---------cchhcccCCC
Confidence 4 33221 12345678888888888765445544 346778888888888764 333221 0012346788
Q ss_pred cceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccC
Q 005639 471 LHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQ 550 (686)
Q Consensus 471 L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~ 550 (686)
|++|+++++. ++.+..... ...+.|+.+....- .+.+. ........+++|++|++++|.++......
T Consensus 378 L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n---~l~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 378 LQSLNLSYNE-PLSLKTEAF---KECPQLELLDLAFT---RLKVK------DAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp CCEEECCSCS-CEEECTTTT---TTCTTCSEEECTTC---CEECC------TTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred CCEEECCCCc-CCcCCHHHh---cCCccCCeEECCCC---cCCCc------ccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 8888888764 222211100 11123333322111 00000 00011346788888888888776655544
Q ss_pred ccccccCCccEEEEecCCCCcc--ccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCc
Q 005639 551 LAAVYSQNLTRLIVHGCEKLKY--LFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSEL 628 (686)
Q Consensus 551 ~~~~~l~~L~~L~l~~C~~L~~--l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L 628 (686)
+. .+++|++|++++| ++.. ++....+..+++|++|++++| .++.+.. .....+++|+.|+++++. +
T Consensus 445 ~~--~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~Ls~N~-l 512 (606)
T 3t6q_A 445 FD--GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-------HAFTSLKMMNHVDLSHNR-L 512 (606)
T ss_dssp TT--TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECCSSC-C
T ss_pred Hh--CCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccCh-------hhhccccCCCEEECCCCc-c
Confidence 44 6788888888886 4443 112234567888888888888 4665521 234567888888888874 4
Q ss_pred CeeecCCCcCCCCCccEEEEecCC
Q 005639 629 KTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 629 ~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
+.+..... ..++.| .|++++|.
T Consensus 513 ~~~~~~~l-~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 513 TSSSIEAL-SHLKGI-YLNLASNH 534 (606)
T ss_dssp CGGGGGGG-TTCCSC-EEECCSSC
T ss_pred CcCChhHh-Cccccc-EEECcCCc
Confidence 44333211 245778 88888874
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-31 Score=306.76 Aligned_cols=516 Identities=15% Similarity=0.013 Sum_probs=276.6
Q ss_pred hhcCCCCEEEecCCCCc-cCCC---CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-Ccc---cCC
Q 005639 83 DMLKNCPTIFLHDCKHW-EVPE---GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSL---FHL 154 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~-~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~---i~~ 154 (686)
....++++|++++|.+. .+|. ...+++|++|++++|.+.+..+..++.++++|++|++++|.+... |.. +++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 34577888888887774 3443 237777888888877766566655556677777777777776553 333 556
Q ss_pred CCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 155 PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 155 l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
+++|++|++++|.+.....++++++|++|++++|.+...+..++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECC
Confidence 666666666666655533335666666666666665543223666666666666666522233433 5666666666666
Q ss_pred CCccccccccccccccccchhhhccCCCCcEEEEEecCCc-ccCccccc--cCccEEEEEEcC----ccCCCCccccceE
Q 005639 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFS--KKLERYKIFIGD----EWDWSGNYKNKRV 307 (686)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~----~~~~~~~~~~l~~ 307 (686)
+|.+....+. . .+++|++|++++|.+. .+|..+.. ++|+.|++..+. .+......+.++.
T Consensus 256 ~n~l~~~~~~------------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 256 SNQFVGPIPP------------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp SSCCEESCCC------------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred CCcccCccCc------------c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 6655422110 0 3444555555544433 33333321 444444443222 1122233344444
Q ss_pred EEEecCC---CchHHHHHHhhccceeeccccc-------------------------CccccccccccccccccceEeec
Q 005639 308 LKLKLYT---SNVDEVIMQLKGIEELYLDEVP-------------------------GIKNVLYDLDIEGFLQLKHLHVQ 359 (686)
Q Consensus 308 l~l~~~~---~~~~~~~~~~~~L~~L~l~~~~-------------------------~~~~~~~~~~~~~l~~L~~L~l~ 359 (686)
|++..+. .++......+++|+.|++.++. .....+.......+++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 4444321 1222223334444444444433 22222211111113445555555
Q ss_pred cccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEE
Q 005639 360 NNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLN 439 (686)
Q Consensus 360 ~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~ 439 (686)
+|.....++ .....+++|+.|+++++. +... .+...+.+++|+.|++++|.-...+|. .+..+++|++|+
T Consensus 403 ~n~l~~~~p-----~~l~~l~~L~~L~Ls~N~-l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~ 472 (768)
T 3rgz_A 403 NNGFTGKIP-----PTLSNCSELVSLHLSFNY-LSGT--IPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLI 472 (768)
T ss_dssp SSEEEEECC-----GGGGGCTTCCEEECCSSE-EESC--CCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEE
T ss_pred CCccccccC-----HHHhcCCCCCEEECcCCc-ccCc--ccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEE
Confidence 443211111 123345556666665543 1111 011234456666666666543333333 345566666666
Q ss_pred EeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccccccccccc
Q 005639 440 VINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDT 519 (686)
Q Consensus 440 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 519 (686)
+++|.-...++. ....+++|++|+++++.-...++... ...+.|+.+....- .+.+
T Consensus 473 L~~N~l~~~~p~------------~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L~~N---~l~~----- 528 (768)
T 3rgz_A 473 LDFNDLTGEIPS------------GLSNCTNLNWISLSNNRLTGEIPKWI----GRLENLAILKLSNN---SFSG----- 528 (768)
T ss_dssp CCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSS---CCEE-----
T ss_pred ecCCcccCcCCH------------HHhcCCCCCEEEccCCccCCcCChHH----hcCCCCCEEECCCC---cccC-----
Confidence 666543333332 23456777777777765332333211 11123333322111 1111
Q ss_pred ccccccccccCCcccEEeecccccc-eecccCc-----------------------------------------------
Q 005639 520 LMPFFNEKVVFPNLETLELCAISTE-KIWCNQL----------------------------------------------- 551 (686)
Q Consensus 520 ~~~~~~~~~~~~~L~~L~i~~~~l~-~~~~~~~----------------------------------------------- 551 (686)
.....+..+++|+.|++++|.++ .++....
T Consensus 529 --~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 529 --NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp --ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred --cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 11223457899999999998654 2221100
Q ss_pred --------------------cccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccc-eeecccccccccc
Q 005639 552 --------------------AAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLE-SIVGKESGEEATT 610 (686)
Q Consensus 552 --------------------~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~-~~~~~~~~~~~~~ 610 (686)
....+++|+.|+++++ ++....|..+ ..+++|+.|+++++. ++ .++ ..
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l-~~l~~L~~L~Ls~N~-l~g~ip--------~~ 675 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEI-GSMPYLFILNLGHND-ISGSIP--------DE 675 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGG-GGCTTCCEEECCSSC-CCSCCC--------GG
T ss_pred cccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHH-hccccCCEEeCcCCc-cCCCCC--------hH
Confidence 0113578999999985 6776556554 789999999999994 44 442 24
Q ss_pred cccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCCCceeccccc
Q 005639 611 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRF 661 (686)
Q Consensus 611 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~ 661 (686)
...+++|+.|+++++.--..+|.... .+++|++|++++++---.+|.++
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCSSEEEEECCSSS
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcCCcccccCCCch
Confidence 56889999999999865556776544 45999999999987666888764
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=297.63 Aligned_cols=486 Identities=17% Similarity=0.165 Sum_probs=304.2
Q ss_pred EecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc
Q 005639 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
.+.+.....+|. ..+..+++|++++|.+..++. ...+++|++|++++|.+. .++...|.++++||+|++++|.+..
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc
Confidence 344444555554 456789999999999987764 348999999999999876 6666778999999999999999988
Q ss_pred CC-cccCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEccCCCCcc--ccHHHhcCCCCCEEeccCCCCCcccCcccc
Q 005639 148 LP-SLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 148 lp-~~i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
+| ..++++++|++|++++|.++. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 65 678999999999999999888 3 369999999999999998885 78889999999999999987 777776557
Q ss_pred cCCCCC----cEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc--ccCccc-cccCccEEEEEEcCc
Q 005639 223 SGLSRL----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM--ILPKGL-FSKKLERYKIFIGDE 295 (686)
Q Consensus 223 ~~L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~ 295 (686)
+.+++| +.|++++|.+....+ ..+..+ +|+.|+++++... .++..+ ....++...+.....
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~-----------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQP-----------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECT-----------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred cchhccchhhhhcccCCCCceecCH-----------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 888888 889999887763222 233333 6888888776321 111111 113333333322110
Q ss_pred cC----------CCCccc--cceEEEEecCCCc---hHHHHHHhhccceeecccccCccccccccccccccccceEeecc
Q 005639 296 WD----------WSGNYK--NKRVLKLKLYTSN---VDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQN 360 (686)
Q Consensus 296 ~~----------~~~~~~--~l~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 360 (686)
.. ...... .++.+.+.....+ .......+++|+.|++.++... .+... +..+ +|++|++.+
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~--~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNF-GWQHLELVN 313 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC--CSCC-CCSEEEEES
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh--hccC-CccEEeecc
Confidence 00 000000 1222233222111 0111223455666665554322 22221 2334 666666666
Q ss_pred ccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccc-hhhhcCCCCCcEEE
Q 005639 361 NPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS-FSFVRGLPQLQTLN 439 (686)
Q Consensus 361 ~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~-~~~~~~l~~L~~L~ 439 (686)
|.. ..+ ....+++|+.|.+.++.... ..+...+++|++|++++|. +..... ...+..+++|++|+
T Consensus 314 n~~-~~l-------~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 314 CKF-GQF-------PTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CBC-SSC-------CBCBCSSCCEEEEESCBSCC-----BCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEE
T ss_pred Ccc-ccc-------CcccccccCEEeCcCCcccc-----ccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEE
Confidence 542 121 12345666666666554211 1222456666666666643 333310 12345566666666
Q ss_pred EeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccccccccccc
Q 005639 440 VINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDT 519 (686)
Q Consensus 440 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 519 (686)
+++|. +..++. ....+++|++|+++++.- +...
T Consensus 380 l~~n~-l~~~~~------------~~~~l~~L~~L~l~~n~l-~~~~--------------------------------- 412 (570)
T 2z63_A 380 LSFNG-VITMSS------------NFLGLEQLEHLDFQHSNL-KQMS--------------------------------- 412 (570)
T ss_dssp CCSCS-EEEEEE------------EEETCTTCCEEECTTSEE-ESCT---------------------------------
T ss_pred CCCCc-cccccc------------cccccCCCCEEEccCCcc-cccc---------------------------------
Confidence 66643 333332 133456666666665431 1100
Q ss_pred ccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCc-cccChhHHhhcccccEEEEecccccce
Q 005639 520 LMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLK-YLFPSSMIRNFVQLEHLEICYCSSLES 598 (686)
Q Consensus 520 ~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~-~l~p~~~~~~l~~L~~L~i~~c~~L~~ 598 (686)
.......+++|++|++++|.+.......+. .+++|++|++++|. +. ...| ..+..+++|++|++++| .++.
T Consensus 413 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~p-~~~~~l~~L~~L~l~~n-~l~~ 484 (570)
T 2z63_A 413 ---EFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNS-FQENFLP-DIFTELRNLTFLDLSQC-QLEQ 484 (570)
T ss_dssp ---TSCTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCE-EGGGEEC-SCCTTCTTCCEEECTTS-CCCE
T ss_pred ---chhhhhcCCCCCEEeCcCCcccccchhhhh--cCCcCcEEECcCCc-Cccccch-hhhhcccCCCEEECCCC-cccc
Confidence 011234678999999999988776555554 68999999999974 43 2224 33478899999999999 4666
Q ss_pred eecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCC
Q 005639 599 IVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
+.. .....+++|+.|++++| +++.++.... ..+++|++|+++++|
T Consensus 485 ~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 485 LSP-------TAFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CCh-------hhhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCc
Confidence 521 23457889999999997 5777765432 256999999999854
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-31 Score=298.78 Aligned_cols=521 Identities=16% Similarity=0.110 Sum_probs=327.6
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
+.++.+++++..+|.... +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 568888888888887553 79999999999887 56777789999999999999999885 6678999999999999999
Q ss_pred CCC-ch-hhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccc
Q 005639 168 LGD-IA-IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (686)
Q Consensus 168 l~~-~~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (686)
++. |. .++++++|++|++++|++..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+...
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 160 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL--- 160 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB---
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc---
Confidence 998 54 6999999999999999999887 469999999999999997 6666665589999999999999977522
Q ss_pred ccccccccchhhhc--cCCCCcEEEEEecCCcccCcccc--cc---------------------------CccEEEEEEc
Q 005639 245 LNVGRSNASLQELK--LLSHLTTLEIQICDAMILPKGLF--SK---------------------------KLERYKIFIG 293 (686)
Q Consensus 245 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~--~~---------------------------~L~~L~l~~~ 293 (686)
....++ .+++|+.|++++|.+..+++... .. +|+.|.+..+
T Consensus 161 --------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 161 --------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp --------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred --------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 223333 45789999999888766654432 13 3444443322
Q ss_pred Cc----cCCCCcc--ccceEEEEecCC--CchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCce
Q 005639 294 DE----WDWSGNY--KNKRVLKLKLYT--SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFIL 365 (686)
Q Consensus 294 ~~----~~~~~~~--~~l~~l~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 365 (686)
.. ..+.... ++++.|++..+. .+.......+++|+.|++.++........ .+.++++|+.|++.++..-.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH--SLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT--TTTTCTTCCEEECTTCBCCC
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh--hhcCCCCccEEeccchhhhc
Confidence 21 1111112 236666665432 11222223456666666665543322211 24556777777776543111
Q ss_pred e-----EEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCC-CCccccchhhhc--CCCCCcE
Q 005639 366 F-----IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD-KLKNIFSFSFVR--GLPQLQT 437 (686)
Q Consensus 366 ~-----l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~-~l~~l~~~~~~~--~l~~L~~ 437 (686)
. ++.- .......+++|++|+++++. +..+. ......+++|++|++++|. .+..++.. .+. ..++|+.
T Consensus 311 ~~~~~~lp~i-~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~-~f~~~~~~~L~~ 385 (680)
T 1ziw_A 311 SISLASLPKI-DDFSFQWLKCLEHLNMEDND-IPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNE-TFVSLAHSPLHI 385 (680)
T ss_dssp ------CCEE-CTTTTTTCTTCCEEECCSCC-BCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTT-TTGGGTTSCCCE
T ss_pred cccccccccc-ChhhcccCCCCCEEECCCCc-cCCCC--hhHhccccCCcEEECCCCchhhhhcchh-hhcccccCcCce
Confidence 0 0000 00123456788888887753 33221 1223568999999999875 24444332 122 2368999
Q ss_pred EEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccc------
Q 005639 438 LNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREV------ 511 (686)
Q Consensus 438 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~------ 511 (686)
|++++|. +..+.. .....+++|+.|+++++.--..++.... ...+.|+.+....-....
T Consensus 386 L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 386 LNLTKNK-ISKIES-----------DAFSWLGHLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp EECTTSC-CCEECT-----------TTTTTCTTCCEEECCSSCCEEECCSGGG---TTCTTCCEEECCSCSEEECCTTTT
T ss_pred EECCCCC-CCeECh-----------hhhhCCCCCCEEeCCCCcCccccCcccc---cCcccccEEecCCCCcceeChhhh
Confidence 9999875 433322 1345689999999998754333322111 111222222221110000
Q ss_pred -------cccccc--ccc-cccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccCh-----
Q 005639 512 -------ILEDEC--DTL-MPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPS----- 576 (686)
Q Consensus 512 -------~~~~~~--~~~-~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~----- 576 (686)
...... ... .........+++|+.|++++|+++.++...+. .+++|++|+++++ ++..+++.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE--GLEKLEILDLQHN-NLARLWKHANPGG 527 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCGGGGSTTSTTS
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc--cccccCEEeCCCC-CccccchhhccCC
Confidence 000000 000 01112234567788888888877776655554 6778888888875 56655211
Q ss_pred --hHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCCCc
Q 005639 577 --SMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKV 654 (686)
Q Consensus 577 --~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L 654 (686)
..+..+++|++|+++++ .++.++. .....+++|+.|+++++ +++.++.+... .+++|++|+++++ ++
T Consensus 528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~L~~N-~l 596 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESN-GFDEIPV-------EVFKDLFELKIIDLGLN-NLNTLPASVFN-NQVSLKSLNLQKN-LI 596 (680)
T ss_dssp CCCTTTTCTTCCEEECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECTTS-CC
T ss_pred cchhhcCCCCCCEEECCCC-CCCCCCH-------HHcccccCcceeECCCC-CCCcCCHhHhC-CCCCCCEEECCCC-cC
Confidence 12466788888888877 4665521 12346788889998764 67777765432 4689999999887 56
Q ss_pred eeccc
Q 005639 655 KIFTS 659 (686)
Q Consensus 655 ~~lp~ 659 (686)
+.+|.
T Consensus 597 ~~~~~ 601 (680)
T 1ziw_A 597 TSVEK 601 (680)
T ss_dssp CBCCH
T ss_pred CccCh
Confidence 55554
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.1e-30 Score=288.27 Aligned_cols=470 Identities=14% Similarity=0.139 Sum_probs=271.3
Q ss_pred EecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC
Q 005639 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD 170 (686)
Q Consensus 92 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~ 170 (686)
+.+++.+..+|.... ++|++|++++|.+. .++...|.++++||+|++++|.+..++ ..++.+++|++|++++|.++.
T Consensus 11 ~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp ECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred ECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 334444555554332 45666666665554 333333455666666666666655533 455566666666666666555
Q ss_pred --chhhcCCCCCcEEEccCCCCcc--ccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccccc
Q 005639 171 --IAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (686)
Q Consensus 171 --~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (686)
+..++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+..
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------ 162 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN------ 162 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE------
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc------
Confidence 2336666666666666665553 244455666666666666554555554335566666666666555441
Q ss_pred ccccccchhhhccCCCCcEEEEEecCCcccCcccc--ccCccEEEEEEcCccC-------CCCccccceEEEEecCCCc-
Q 005639 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF--SKKLERYKIFIGDEWD-------WSGNYKNKRVLKLKLYTSN- 316 (686)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~-------~~~~~~~l~~l~l~~~~~~- 316 (686)
..+..++.+++|+.|+++.+....++.... .++|+.|.+..+.... .....+.++.+.+..+.-.
T Consensus 163 -----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 163 -----YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred -----cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 122445555556666665555544444331 3555555555433211 1122346666666654221
Q ss_pred --hHHHH---HHhhccceeecccccCccc--cc--cccccccccccceEeeccccCceeEEeccccc----ccccccccc
Q 005639 317 --VDEVI---MQLKGIEELYLDEVPGIKN--VL--YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWV----RYNAFLLLE 383 (686)
Q Consensus 317 --~~~~~---~~~~~L~~L~l~~~~~~~~--~~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~----~~~~~~~L~ 383 (686)
...+. ..+.+|+.+.+.++..... .. ....+..+++|+.|.+.++..-. ...+. ....+++|+
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~----~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ----FYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC----GGGSCCCCHHHHHSTTCC
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch----hhhcccchhhhhhcccce
Confidence 11122 2345777887776643221 00 00123567888888888764211 00000 122356888
Q ss_pred hhhccCCcchhhhhcCCCCc-cccCCccEEEEecCCCCccccc-hhhhcCCCCCcEEEEeeccCccccccccccCCcccC
Q 005639 384 SLVLHNLIHLEKICLGQLRA-ESFYKLKIIKVRNCDKLKNIFS-FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCH 461 (686)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~C~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 461 (686)
.|.+.++. ++.++. .. ..+++|+.|++++|.-...+|. ...+..+++|++|++++|. ++.++..+
T Consensus 314 ~L~l~~n~-l~~ip~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 380 (549)
T 2z81_A 314 RITVENSK-VFLVPC---SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTG-------- 380 (549)
T ss_dssp EEEEESSC-CCCCCH---HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHH--------
T ss_pred EEEeccCc-cccCCH---HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccch--------
Confidence 88888754 333211 11 3478999999999754333332 1235678999999999864 54443200
Q ss_pred CCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccc
Q 005639 462 EVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI 541 (686)
Q Consensus 462 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 541 (686)
.....+++|++|+++++ .++.++. ....+++|++|++++|
T Consensus 381 -~~~~~l~~L~~L~Ls~N-~l~~lp~--------------------------------------~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 381 -EILLTLKNLTSLDISRN-TFHPMPD--------------------------------------SCQWPEKMRFLNLSST 420 (549)
T ss_dssp -HHGGGCTTCCEEECTTC-CCCCCCS--------------------------------------CCCCCTTCCEEECTTS
T ss_pred -hhhhcCCCCCEEECCCC-CCccCCh--------------------------------------hhcccccccEEECCCC
Confidence 01346889999999987 4444332 1235688999999999
Q ss_pred ccceecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceee
Q 005639 542 STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLK 621 (686)
Q Consensus 542 ~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~ 621 (686)
.++.++.. ..++|++|++++| ++++++ ..+++|++|++++| .++.++. ...+++|+.|+
T Consensus 421 ~l~~l~~~-----~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N-~l~~ip~---------~~~l~~L~~L~ 479 (549)
T 2z81_A 421 GIRVVKTC-----IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN-KLKTLPD---------ASLFPVLLVMK 479 (549)
T ss_dssp CCSCCCTT-----SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCCC---------GGGCTTCCEEE
T ss_pred Ccccccch-----hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC-ccCcCCC---------cccCccCCEEe
Confidence 88766532 2368999999886 777662 46789999999988 5776631 23678899999
Q ss_pred cccCCCcCeeecCCCcCCCCCccEEEEecCCCc
Q 005639 622 LWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKV 654 (686)
Q Consensus 622 i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L 654 (686)
++++ +++.++.+.. ..+++|+.|+++++|-.
T Consensus 480 Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 480 ISRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCSS-CCCCCCTTGG-GGCTTCCEEECCSSCBC
T ss_pred cCCC-ccCCcCHHHH-hcCcccCEEEecCCCcc
Confidence 9986 5776665422 24689999999887643
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=298.48 Aligned_cols=501 Identities=17% Similarity=0.121 Sum_probs=324.3
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
..+.+.....+|. .+.++++|++++|.+..+.. ...+++|++|++++|.....+++..|.++++||+|+|++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 4445555666665 77899999999999977643 3389999999999997766777777899999999999999988
Q ss_pred cC-CcccCCCCCCcEEEccCCCCCC--chh--hcCCCCCcEEEccCCCCcccc--HHHhcCCCCCEEeccCCCCCcccCc
Q 005639 147 SL-PSLFHLPLNLQTLCLDRCALGD--IAI--IGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP 219 (686)
Q Consensus 147 ~l-p~~i~~l~~L~~L~l~~~~l~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~ 219 (686)
.+ |+.++++++|++|++++|.+.. |.. ++++++|++|++++|.+..++ ..++++++|++|++++|. +..+.+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~ 165 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE 165 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCH
Confidence 75 7889999999999999999876 544 889999999999999888653 568999999999999987 555444
Q ss_pred ccccCC--CCCcEEEcCCCccccccccccccccccchhhhccCC------CCcEEEEEecCCcc-cCccc----cccCcc
Q 005639 220 NLLSGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS------HLTTLEIQICDAMI-LPKGL----FSKKLE 286 (686)
Q Consensus 220 ~~i~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~-~~~~~----~~~~L~ 286 (686)
..++.+ ++|+.|++++|.+....+ ..++.+. .|+.|++++|.... .+..+ ....+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVS-----------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCC-----------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred HHcccccCCccceEECCCCccccccc-----------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 447776 889999999887763221 2222222 48899998886432 22222 124455
Q ss_pred EEEEEEcCccCCCCccccceEEEEecCCCchHH-HH-HHhhccceeecccccCccccccccccccccccceEeeccccCc
Q 005639 287 RYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDE-VI-MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFI 364 (686)
Q Consensus 287 ~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 364 (686)
.+.+......... ....+ ...... +. ...++|+.|++.++........ .+..+++|+.|+++++. +
T Consensus 235 ~L~l~~~~~~~~~-~~~~l--------~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~-i 302 (844)
T 3j0a_A 235 SLILAHHIMGAGF-GFHNI--------KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR--VFETLKDLKVLNLAYNK-I 302 (844)
T ss_dssp EEECCSSCCBCSS-SCSSS--------TTGGGTTTTTTTTSCCCEEECTTCCCCEECSC--CSSSCCCCCEEEEESCC-C
T ss_pred ceecccccccccc-ccccc--------CCCChhhhhccccCCccEEECCCCcccccChh--hhhcCCCCCEEECCCCc-C
Confidence 5544210000000 00000 000000 00 0135677888877654332222 24678888888888875 3
Q ss_pred eeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeecc
Q 005639 365 LFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (686)
Q Consensus 365 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~ 444 (686)
..++.. ....+++|++|+++++. +..+. ......+++|+.|+++++ ++..+++ ..+..+++|++|+++++.
T Consensus 303 ~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 303 NKIADE----AFYGLDNLQVLNLSYNL-LGELY--SSNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CEECTT----TTTTCSSCCEEEEESCC-CSCCC--SCSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred CCCChH----HhcCCCCCCEEECCCCC-CCccC--HHHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC
Confidence 332111 23457788888887763 33221 123456788888888885 5666654 246778888888888754
Q ss_pred CccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccc
Q 005639 445 NMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFF 524 (686)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 524 (686)
+..++ .+++|+.|+++++. ++.++... ..++.+..... . .......
T Consensus 374 -l~~i~----------------~~~~L~~L~l~~N~-l~~l~~~~-------~~l~~L~ls~N---~------l~~l~~~ 419 (844)
T 3j0a_A 374 -LTTIH----------------FIPSIPDIFLSGNK-LVTLPKIN-------LTANLIHLSEN---R------LENLDIL 419 (844)
T ss_dssp -SCCCS----------------SCCSCSEEEEESCC-CCCCCCCC-------TTCCEEECCSC---C------CCSSTTH
T ss_pred -CCccc----------------CCCCcchhccCCCC-cccccccc-------cccceeecccC---c------cccCchh
Confidence 43332 26777888777642 33333210 11111111000 0 0000111
Q ss_pred cccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccC----hhHHhhcccccEEEEecccccceee
Q 005639 525 NEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFP----SSMIRNFVQLEHLEICYCSSLESIV 600 (686)
Q Consensus 525 ~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p----~~~~~~l~~L~~L~i~~c~~L~~~~ 600 (686)
.....+++|+.|++++|+++.+....... .+++|+.|+++++ .+....+ ...+..+++|++|++++| .++.++
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 496 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPS-ENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP 496 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSC-SCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC
T ss_pred hhhhcCCccceeeCCCCcccccccccccc-cCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccC
Confidence 11236899999999999887654432222 5799999999995 5653321 123467899999999999 677663
Q ss_pred cccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCC
Q 005639 601 GKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 601 ~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
. .....+++|+.|+++++ +++.++..... ++|+.|+++++.
T Consensus 497 ~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~---~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 497 P-------GVFSHLTALRGLSLNSN-RLTVLSHNDLP---ANLEILDISRNQ 537 (844)
T ss_dssp T-------TSSSSCCSCSEEEEESC-CCSSCCCCCCC---SCCCEEEEEEEC
T ss_pred h-------hHccchhhhheeECCCC-CCCccChhhhh---ccccEEECCCCc
Confidence 1 23457899999999997 68888776433 899999999874
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.2e-30 Score=290.70 Aligned_cols=385 Identities=14% Similarity=0.147 Sum_probs=238.0
Q ss_pred cChhhhhCCCCCcEEEecCCCCcc------------------CCcccC--CCCCCcEEEccCCCCCC--chhhcCCCCCc
Q 005639 124 IPNHVFAGMSNLRGLALSNMQFLS------------------LPSLFH--LPLNLQTLCLDRCALGD--IAIIGNLKKLE 181 (686)
Q Consensus 124 ~~~~~f~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~l~~--~~~i~~L~~L~ 181 (686)
+|.. |.++++|++|+|++|.+.. +|+.++ ++++|++|++++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5543 6788888888888888877 888877 88888888888888665 77888888888
Q ss_pred EEEccCCC-Ccc--ccHHHhcCC-------CCCEEeccCCCCCcccCc--ccccCCCCCcEEEcCCCccccccccccccc
Q 005639 182 ILSLVDSN-IEQ--LPEEMAQLT-------QLRLFDLSGCSKLKVIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (686)
Q Consensus 182 ~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (686)
+|++++|+ ++. +|..+++++ +|++|++++|. +..+|. . ++++++|++|++++|.+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~---------- 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVR---------- 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCC----------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcc----------
Confidence 88888887 774 888777776 88888888887 668887 5 788888888888888654
Q ss_pred cccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhc-cc
Q 005639 250 SNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG-IE 328 (686)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-L~ 328 (686)
.+..++.+++|+.|++++|.+..+|..+.. +++ |+
T Consensus 587 ---~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~-----------------------------------------l~~~L~ 622 (876)
T 4ecn_A 587 ---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCA-----------------------------------------FTDQVE 622 (876)
T ss_dssp ---BCCCCCTTSEESEEECCSSCCSCCCTTSCE-----------------------------------------ECTTCC
T ss_pred ---cchhhcCCCcceEEECcCCccccchHHHhh-----------------------------------------ccccCC
Confidence 112667778888888887776655544211 122 33
Q ss_pred eeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCC
Q 005639 329 ELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYK 408 (686)
Q Consensus 329 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 408 (686)
.|++.++... .++..+.....++|+.|+++++..... .|.+ . .....-..++
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~------------ip~l--------------~-~~l~~~~~~~ 674 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE------------GRNI--------------S-CSMDDYKGIN 674 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT------------SSSC--------------S-SCTTTCCCCC
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc------------cccc--------------h-hhhccccCCC
Confidence 4444333321 222211111223466666665542100 0000 0 0011112457
Q ss_pred ccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccc
Q 005639 409 LKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQ 488 (686)
Q Consensus 409 L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~ 488 (686)
|+.|++++| ++..+|. ..+..+++|+.|++++| .+..++...... .......+++|+.|+|+++ +++.++.
T Consensus 675 L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~----~~~~l~nl~~L~~L~Ls~N-~L~~lp~- 745 (876)
T 4ecn_A 675 ASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKP----KDGNYKNTYLLTTIDLRFN-KLTSLSD- 745 (876)
T ss_dssp EEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSC----TTSCCTTGGGCCEEECCSS-CCCCCCG-
T ss_pred cCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhcc----ccccccccCCccEEECCCC-CCccchH-
Confidence 888888885 4667765 34557889999999886 455555410000 0000123448888888876 3433322
Q ss_pred cccchhhhhccccccccccccccccccccccccccccccc--cCCcccEEeecccccceecccCccccccCCccEEEEec
Q 005639 489 VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKV--VFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHG 566 (686)
Q Consensus 489 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 566 (686)
... .+++|+.|++++|.++.++.. .. .+++|+.|++++
T Consensus 746 -------------------------------------~l~~~~l~~L~~L~Ls~N~L~~lp~~-l~--~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 746 -------------------------------------DFRATTLPYLSNMDVSYNCFSSFPTQ-PL--NSSQLKAFGIRH 785 (876)
T ss_dssp -------------------------------------GGSTTTCTTCCEEECCSSCCSSCCCG-GG--GCTTCCEEECCC
T ss_pred -------------------------------------HhhhccCCCcCEEEeCCCCCCccchh-hh--cCCCCCEEECCC
Confidence 111 578888888888877776443 22 678888888876
Q ss_pred C-----CCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCC-----
Q 005639 567 C-----EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH----- 636 (686)
Q Consensus 567 C-----~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~----- 636 (686)
+ .++....|..+ .++++|++|++++|. +..++. ..+++|+.|+|++|+ +..+.....
T Consensus 786 N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~-L~~Ip~----------~l~~~L~~LdLs~N~-l~~i~~~~~~~~~~ 852 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGI-TTCPSLIQLQIGSND-IRKVDE----------KLTPQLYILDIADNP-NISIDVTSVCPYIE 852 (876)
T ss_dssp CBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSC-CCBCCS----------CCCSSSCEEECCSCT-TCEEECGGGHHHHH
T ss_pred CCCcccccccccChHHH-hcCCCCCEEECCCCC-CCccCH----------hhcCCCCEEECCCCC-CCccChHHcccccc
Confidence 3 23444435443 678888888888884 566621 134688888888886 333332110
Q ss_pred --cCCCCCccEEEEecCCCce
Q 005639 637 --TSKWPMLKKLEVYGCDKVK 655 (686)
Q Consensus 637 --~~~~~~L~~L~I~~C~~L~ 655 (686)
...+..-+..+|.+||.|.
T Consensus 853 ~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 853 AGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp TTCCEEECCTTSEEESCGGGC
T ss_pred chheeecCCCccccCCCCCcc
Confidence 0011222334678888774
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.2e-29 Score=275.73 Aligned_cols=474 Identities=16% Similarity=0.193 Sum_probs=304.3
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~ 166 (686)
.+.++.++.++..+|... .+++++|++++|.+. .++...|.++++|++|++++|.+..++ ..++++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 356777777778888644 357999999999887 566666899999999999999998865 57899999999999999
Q ss_pred CCCC--chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcc--cCcccccCCCCCcEEEcCCCccccc
Q 005639 167 ALGD--IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 167 ~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
.++. +..++++++|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9988 5789999999999999999999886 59999999999999987 554 5766 89999999999999987622
Q ss_pred cccccccccccchhhhccCCCC----cEEEEEecCCcccCccccc-cCccEEEEEEcCcc-----CCCCccccceEEEEe
Q 005639 242 FEGLNVGRSNASLQELKLLSHL----TTLEIQICDAMILPKGLFS-KKLERYKIFIGDEW-----DWSGNYKNKRVLKLK 311 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~~~~l~~l~l~ 311 (686)
. ...++.+++| +.+++++|.+..+++..+. .+|+.+.+..+... .+......++...+.
T Consensus 165 ~-----------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 165 Y-----------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp C-----------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred c-----------HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 2 2444555555 7899999988777665443 46777776533110 001111222222221
Q ss_pred cC--C---C---chHHHHHHhh--ccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccc
Q 005639 312 LY--T---S---NVDEVIMQLK--GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLL 381 (686)
Q Consensus 312 ~~--~---~---~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 381 (686)
.. . . +.......+. .++.+.+.++........ ..+..+++|++|++.++. ++.++. ....+ +
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~-----~~~~~-~ 305 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKD-----FSYNF-G 305 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCB-----CCSCC-C
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhh-----hhccC-C
Confidence 10 0 0 0000000111 122233322211111111 123456677777776654 222211 12223 6
Q ss_pred cchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccC
Q 005639 382 LESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCH 461 (686)
Q Consensus 382 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 461 (686)
|++|.+.++. +. ..+...+++|+.|++.++......+. ..+++|++|++++|. +......
T Consensus 306 L~~L~l~~n~-~~-----~l~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~--------- 365 (570)
T 2z63_A 306 WQHLELVNCK-FG-----QFPTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKGCC--------- 365 (570)
T ss_dssp CSEEEEESCB-CS-----SCCBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEEEE---------
T ss_pred ccEEeeccCc-cc-----ccCcccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccccc---------
Confidence 6666666653 22 12334566777777776553332221 456777777776653 2222100
Q ss_pred CCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccc
Q 005639 462 EVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI 541 (686)
Q Consensus 462 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 541 (686)
......+++|++|+++++. ++.++ +....+++|++|++++|
T Consensus 366 ~~~~~~~~~L~~L~l~~n~-l~~~~--------------------------------------~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNG-VITMS--------------------------------------SNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp EHHHHTCSCCCEEECCSCS-EEEEE--------------------------------------EEEETCTTCCEEECTTS
T ss_pred cccccccCccCEEECCCCc-ccccc--------------------------------------ccccccCCCCEEEccCC
Confidence 0012346667777776653 11111 11346899999999999
Q ss_pred ccceecc-cCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccc--eeecccccccccccccccccc
Q 005639 542 STEKIWC-NQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLE--SIVGKESGEEATTTFVFPKVT 618 (686)
Q Consensus 542 ~l~~~~~-~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~--~~~~~~~~~~~~~~~~~~~L~ 618 (686)
.+..... .... .+++|++|++++| ++...+| ..+..+++|++|++++|. ++ .++ .....+++|+
T Consensus 407 ~l~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p--------~~~~~l~~L~ 473 (570)
T 2z63_A 407 NLKQMSEFSVFL--SLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLP--------DIFTELRNLT 473 (570)
T ss_dssp EEESCTTSCTTT--TCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE-EGGGEEC--------SCCTTCTTCC
T ss_pred ccccccchhhhh--cCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCc-Cccccch--------hhhhcccCCC
Confidence 8776543 2333 7899999999997 5666544 445789999999999995 43 231 2345789999
Q ss_pred eeecccCCCcCeeecCCCcCCCCCccEEEEecCCCceeccc
Q 005639 619 FLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTS 659 (686)
Q Consensus 619 ~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L~~lp~ 659 (686)
.|++++|. ++.+..... ..+++|++|++++| +++.+|.
T Consensus 474 ~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 474 FLDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp EEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCT
T ss_pred EEECCCCc-cccCChhhh-hcccCCCEEeCCCC-cCCCCCH
Confidence 99999985 666643322 25699999999998 5666554
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.9e-30 Score=281.97 Aligned_cols=462 Identities=16% Similarity=0.136 Sum_probs=324.1
Q ss_pred CcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc
Q 005639 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (686)
Q Consensus 73 ~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~ 150 (686)
+.....+|. ...+.+++|++++|++..++. ...+++|++|++++|.+. .++...|.++++|++|++++|.+..+|.
T Consensus 14 ~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 14 SRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCH
Confidence 334444444 345799999999999977753 348999999999999887 5666668999999999999999999876
Q ss_pred c-cCCCCCCcEEEccCCCCCC---chhhcCCCCCcEEEccCCC-CccccH-HHhcCCCCCEEeccCCCCCcc-cCccccc
Q 005639 151 L-FHLPLNLQTLCLDRCALGD---IAIIGNLKKLEILSLVDSN-IEQLPE-EMAQLTQLRLFDLSGCSKLKV-IPPNLLS 223 (686)
Q Consensus 151 ~-i~~l~~L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~l~~-~p~~~i~ 223 (686)
. ++++++|++|++++|.++. |..++++++|++|++++|. +..+|. .++++++|++|++++|. +.. .|.. ++
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~ 169 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQS-LK 169 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhh-hh
Confidence 5 8999999999999999874 5789999999999999997 778874 69999999999999988 555 5554 89
Q ss_pred CCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccC---ccc--cccCccEEEEEEcCcc--
Q 005639 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILP---KGL--FSKKLERYKIFIGDEW-- 296 (686)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~-- 296 (686)
.+++|++|+++++..... ....++.+++|+.|++++|.+...+ ..+ ...+|+.|.+......
T Consensus 170 ~l~~L~~L~l~~n~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFL-----------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TCSEEEEEEEECSBSTTH-----------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccCceEecccCccccc-----------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 999999999988865411 1122456899999999999876642 111 2477888887644311
Q ss_pred ------CCCCccccceEEEEecCCCc--h------HHHHHHhhccceeecccccCcccccc-cc--ccccccccceEeec
Q 005639 297 ------DWSGNYKNKRVLKLKLYTSN--V------DEVIMQLKGIEELYLDEVPGIKNVLY-DL--DIEGFLQLKHLHVQ 359 (686)
Q Consensus 297 ------~~~~~~~~l~~l~l~~~~~~--~------~~~~~~~~~L~~L~l~~~~~~~~~~~-~~--~~~~l~~L~~L~l~ 359 (686)
........++.+.+..+... . ......+++++.|.+.++........ .+ .....++|++|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 11123346677766543210 0 00122356777777766542221100 00 01335789999999
Q ss_pred cccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccc-hhhhcCCCCCcEE
Q 005639 360 NNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS-FSFVRGLPQLQTL 438 (686)
Q Consensus 360 ~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~-~~~~~~l~~L~~L 438 (686)
++. ++.+|.. ....+++|+.|+++++.-...+.......+.+++|+.|++++| +++.++. ...+..+++|++|
T Consensus 319 ~n~-l~~ip~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 319 NSK-VFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp SSC-CCCCCHH----HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEE
T ss_pred cCc-cccCCHH----HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEE
Confidence 876 4443221 1135889999999887533222211122467899999999996 5676653 1346789999999
Q ss_pred EEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccc
Q 005639 439 NVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECD 518 (686)
Q Consensus 439 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 518 (686)
++++| .++.++. ....+++|++|+++++. ++.++.
T Consensus 393 ~Ls~N-~l~~lp~------------~~~~~~~L~~L~Ls~N~-l~~l~~------------------------------- 427 (549)
T 2z81_A 393 DISRN-TFHPMPD------------SCQWPEKMRFLNLSSTG-IRVVKT------------------------------- 427 (549)
T ss_dssp ECTTC-CCCCCCS------------CCCCCTTCCEEECTTSC-CSCCCT-------------------------------
T ss_pred ECCCC-CCccCCh------------hhcccccccEEECCCCC-cccccc-------------------------------
Confidence 99987 5666654 34567899999999864 333221
Q ss_pred cccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccce
Q 005639 519 TLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLES 598 (686)
Q Consensus 519 ~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~ 598 (686)
..+++|++|++++|+++.+. . .+++|++|++++| +++.++. . ..+++|++|++++| .++.
T Consensus 428 ---------~~~~~L~~L~Ls~N~l~~~~----~--~l~~L~~L~Ls~N-~l~~ip~-~--~~l~~L~~L~Ls~N-~l~~ 487 (549)
T 2z81_A 428 ---------CIPQTLEVLDVSNNNLDSFS----L--FLPRLQELYISRN-KLKTLPD-A--SLFPVLLVMKISRN-QLKS 487 (549)
T ss_dssp ---------TSCTTCSEEECCSSCCSCCC----C--CCTTCCEEECCSS-CCSSCCC-G--GGCTTCCEEECCSS-CCCC
T ss_pred ---------hhcCCceEEECCCCChhhhc----c--cCChhcEEECCCC-ccCcCCC-c--ccCccCCEEecCCC-ccCC
Confidence 12468899999998877653 1 5788999999886 7887743 2 46888999999988 5665
Q ss_pred eecccccccccccccccccceeecccCCC
Q 005639 599 IVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (686)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 627 (686)
++. .....+++|+.|++.+++-
T Consensus 488 ~~~-------~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 488 VPD-------GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCT-------TGGGGCTTCCEEECCSSCB
T ss_pred cCH-------HHHhcCcccCEEEecCCCc
Confidence 521 2245778899999988773
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.6e-29 Score=282.19 Aligned_cols=425 Identities=14% Similarity=0.166 Sum_probs=272.4
Q ss_pred CCCCEEEecCCCCc-cCCCCC-CCCCCcEEEecCCcc-------------------------------------------
Q 005639 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCMSPRDH------------------------------------------- 120 (686)
Q Consensus 86 ~~lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~------------------------------------------- 120 (686)
.+++.|+++++.+. .+|+.. .+++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57888999988883 566544 899999999988843
Q ss_pred -----------------------------------CCccChhhhhCCCCCcEEEecCCCCcc------------------
Q 005639 121 -----------------------------------SIKIPNHVFAGMSNLRGLALSNMQFLS------------------ 147 (686)
Q Consensus 121 -----------------------------------~~~~~~~~f~~l~~Lr~L~L~~~~~~~------------------ 147 (686)
++ +|.. |.++++|++|+|++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 12 4543 6888999999999998887
Q ss_pred CCcccC--CCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCC-Cc--cccHHHhcC------CCCCEEeccCCCCC
Q 005639 148 LPSLFH--LPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSN-IE--QLPEEMAQL------TQLRLFDLSGCSKL 214 (686)
Q Consensus 148 lp~~i~--~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l 214 (686)
+|+.++ ++++|++|++++|.+.. |..++++++|++|++++|+ ++ .+|..++++ ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 898888 99999999999998766 8889999999999999997 87 488888887 899999999887 6
Q ss_pred cccCc--ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEE
Q 005639 215 KVIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFI 292 (686)
Q Consensus 215 ~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 292 (686)
..+|. . ++++++|++|++++|.+.+ ..+ .++.+++|+.|++++|.+..+|..+..
T Consensus 318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~g-----------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~---------- 374 (636)
T 4eco_A 318 KTFPVETS-LQKMKKLGMLECLYNQLEG-----------KLP-AFGSEIKLASLNLAYNQITEIPANFCG---------- 374 (636)
T ss_dssp SSCCCHHH-HTTCTTCCEEECCSCCCEE-----------ECC-CCEEEEEESEEECCSSEEEECCTTSEE----------
T ss_pred CccCchhh-hccCCCCCEEeCcCCcCcc-----------chh-hhCCCCCCCEEECCCCccccccHhhhh----------
Confidence 68887 5 8889999999998887652 122 566777788888777765555443210
Q ss_pred cCccCCCCccccceEEEEecCCCchHHHHHHhhc-cceeecccccCccccccccccccccccceEeeccccCceeEEecc
Q 005639 293 GDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG-IEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSM 371 (686)
Q Consensus 293 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 371 (686)
+++ |+.|++.++... .++..+....+++|++|+++++.....+|
T Consensus 375 -------------------------------l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p--- 419 (636)
T 4eco_A 375 -------------------------------FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG--- 419 (636)
T ss_dssp -------------------------------ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT---
T ss_pred -------------------------------hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch---
Confidence 122 333333333221 22221111123355555555543111000
Q ss_pred cccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCcccccc
Q 005639 372 AWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFT 451 (686)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 451 (686)
..++. .....-.+++|+.|++++| +++.+|. ..+..+++|++|+++++. +..++.
T Consensus 420 -----~~l~~-----------------~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~ 474 (636)
T 4eco_A 420 -----KNFDP-----------------LDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPK 474 (636)
T ss_dssp -----CSSCT-----------------TCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCS
T ss_pred -----hhhcc-----------------cccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCH
Confidence 00000 0001113568889999885 5667765 345678999999998864 445554
Q ss_pred ccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccc--c
Q 005639 452 VGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKV--V 529 (686)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 529 (686)
..... .......+++|+.|+++++. ++.++. ... .
T Consensus 475 ~~~~~----~~~~~~~l~~L~~L~Ls~N~-l~~lp~--------------------------------------~~~~~~ 511 (636)
T 4eco_A 475 NSLKD----ENENFKNTYLLTSIDLRFNK-LTKLSD--------------------------------------DFRATT 511 (636)
T ss_dssp SSSEE----TTEECTTGGGCCEEECCSSC-CCBCCG--------------------------------------GGSTTT
T ss_pred HHhcc----ccccccccCCccEEECcCCc-CCccCh--------------------------------------hhhhcc
Confidence 00000 00001123388888888753 333321 112 5
Q ss_pred CCcccEEeecccccceecccCccccccCCccEEEEecCC-----CCccccChhHHhhcccccEEEEecccccceeecccc
Q 005639 530 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCE-----KLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKES 604 (686)
Q Consensus 530 ~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~-----~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~ 604 (686)
+++|++|++++|.++.++... . .+++|++|++++++ ++....|..+ ..+++|++|++++|. ++.++.
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~~-~--~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~ip~--- 583 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQP-L--NSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSND-IRKVNE--- 583 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCGG-G--GCSSCCEEECCSCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSC-CCBCCS---
T ss_pred CCCcCEEECCCCCCCCcChhh-h--cCCCCCEEECCCCcccccCcccccChHHH-hcCCCCCEEECCCCc-CCccCH---
Confidence 788999999999888765432 2 58899999996532 3343335444 678999999999984 566621
Q ss_pred cccccccccccccceeecccCCCcCeeecCCC-------cCCCCCccEEEEecCCCce
Q 005639 605 GEEATTTFVFPKVTFLKLWNLSELKTFYPGTH-------TSKWPMLKKLEVYGCDKVK 655 (686)
Q Consensus 605 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~-------~~~~~~L~~L~I~~C~~L~ 655 (686)
..+++|+.|++++++ +..+..... ...+...+..+|.+||.|+
T Consensus 584 -------~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 584 -------KITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp -------CCCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred -------hHhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 133789999999886 334432110 1112334566888998875
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=267.15 Aligned_cols=459 Identities=14% Similarity=0.092 Sum_probs=272.8
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
++++++++++..+|.... ++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 678999999988887555 88999999999877 56656688999999999999998886 6788999999999999999
Q ss_pred CCC-chhhcCCCCCcEEEccCCCCcc--ccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCC--cEEEcCCCcccccc
Q 005639 168 LGD-IAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSVKWEF 242 (686)
Q Consensus 168 l~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~~~~~ 242 (686)
++. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~-- 152 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG-- 152 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT--
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc--
Confidence 888 544 89999999999998885 56789999999999999876 544 226777777 999998887620
Q ss_pred ccccccccccchhhhccCCCCcEEEE--EecCCcc-cCccc--cccCccEEEEEEcCccCCCCccccceEEEEecCCCch
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEI--QICDAMI-LPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNV 317 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~ 317 (686)
....+..++.+.. +.+++ +++.... ++... ...+|+.+++..+..... ...+.
T Consensus 153 -------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------~~~~~ 210 (520)
T 2z7x_B 153 -------EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK--------------CSYFL 210 (520)
T ss_dssp -------SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT--------------THHHH
T ss_pred -------ccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc--------------cceee
Confidence 0122344444442 33333 3333221 22111 123344443332210000 00011
Q ss_pred HHH--HHHhhccceeecccccCccccccc-cccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchh
Q 005639 318 DEV--IMQLKGIEELYLDEVPGIKNVLYD-LDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLE 394 (686)
Q Consensus 318 ~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 394 (686)
..+ ...+++|+.|++.++......... ......++|++|+++++.....+|...+......+++|+.+.+.++.-
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 111 112345555555444322111100 001123467777777664221222111111114455555555554321
Q ss_pred hhhcCCCCcccc---CCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeeccc
Q 005639 395 KICLGQLRAESF---YKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQL 471 (686)
Q Consensus 395 ~~~~~~~~~~~~---~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 471 (686)
.++. .....+ ++|+.|++++|. +...+ ....+++|++|++++|.--..++. ....+++|
T Consensus 289 ~~p~--~~~~~~~~~~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L 350 (520)
T 2z7x_B 289 GFPQ--SYIYEIFSNMNIKNFTVSGTR-MVHML---CPSKISPFLHLDFSNNLLTDTVFE------------NCGHLTEL 350 (520)
T ss_dssp CSCT--HHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTT------------TCCCCSSC
T ss_pred ecch--hhhhcccccCceeEEEcCCCc-ccccc---chhhCCcccEEEeECCccChhhhh------------hhccCCCC
Confidence 1100 000111 458888888764 33332 125678888888887653322332 34567788
Q ss_pred ceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccce-ecccC
Q 005639 472 HSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEK-IWCNQ 550 (686)
Q Consensus 472 ~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~-~~~~~ 550 (686)
++|+++++. ++.++. .......+++|++|++++|.++. ++...
T Consensus 351 ~~L~L~~N~-l~~l~~-----------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 351 ETLILQMNQ-LKELSK-----------------------------------IAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CEEECCSSC-CCBHHH-----------------------------------HHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred CEEEccCCc-cCcccc-----------------------------------chHHHhhCCCCCEEECCCCcCCcccccch
Confidence 888887753 221100 00112357888888888887776 66554
Q ss_pred ccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCe
Q 005639 551 LAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKT 630 (686)
Q Consensus 551 ~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 630 (686)
.. .+++|++|++++| ++....|..+ .++|++|++++| .++.++. ....+++|+.|++++| +++.
T Consensus 395 ~~--~l~~L~~L~Ls~N-~l~~~~~~~l---~~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 395 CS--WTKSLLSLNMSSN-ILTDTIFRCL---PPRIKVLDLHSN-KIKSIPK--------QVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp CC--CCTTCCEEECCSS-CCCGGGGGSC---CTTCCEEECCSS-CCCCCCG--------GGGGCTTCCEEECCSS-CCCC
T ss_pred hc--cCccCCEEECcCC-CCCcchhhhh---cccCCEEECCCC-cccccch--------hhhcCCCCCEEECCCC-cCCc
Confidence 44 5788888888886 4543323222 168888888888 5666521 2337788888888886 5777
Q ss_pred eecCCCcCCCCCccEEEEecCC
Q 005639 631 FYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 631 l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
+|.... ..+++|++|+++++|
T Consensus 459 l~~~~~-~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 459 VPDGIF-DRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCTTTT-TTCTTCCEEECCSSC
T ss_pred cCHHHh-ccCCcccEEECcCCC
Confidence 776522 246888888888875
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.3e-27 Score=263.83 Aligned_cols=508 Identities=18% Similarity=0.115 Sum_probs=282.9
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
+.+.....+|. ..+..+++|++++|.+..+++. ..+++|++|++++|.+. .+++..|.++++|++|+|++|.++.+
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC
Confidence 33444445543 4567788888888888777653 37888888888888776 66667778888888888888888877
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEccCCCCcc--ccHHHhcCCCCCEEeccCCCCCcccCccccc
Q 005639 149 PS-LFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (686)
Q Consensus 149 p~-~i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~ 223 (686)
|. .++++++|++|++++|.++. + ..++++++|++|++++|.++. +|..++++++|++|++++|. +..++...++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 64 46788888888888888877 3 457888888888888887763 56677888888888888876 6666655455
Q ss_pred CCCCCc----EEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc-ccCccc--cccCccEEEEEEcCcc
Q 005639 224 GLSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGL--FSKKLERYKIFIGDEW 296 (686)
Q Consensus 224 ~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~ 296 (686)
.+.+++ .++++.+.+....++ ......++.+++..+... ...... ....++...+......
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~------------~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPG------------AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTT------------TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred chhhhhhhhhhhhcccCcccccCcc------------cccchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence 544443 456666554422111 111112233333332211 000000 0122222222211100
Q ss_pred ----------CCCCccccceEEEEecC--CCc---hHHHHHHhhccceeecccccCccccccccccccccccceEeeccc
Q 005639 297 ----------DWSGNYKNKRVLKLKLY--TSN---VDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNN 361 (686)
Q Consensus 297 ----------~~~~~~~~l~~l~l~~~--~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 361 (686)
........+....+... ... .........+++.+.+.+..... . .......+|+.|++.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~---~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-V---KDFSYNFGWQHLELVNC 338 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-C---GGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-c---cccccchhhhhhhcccc
Confidence 00011112222222111 000 00112234556666555443221 1 12344567888888776
Q ss_pred cCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccc-cchhhhcCCCCCcEEEE
Q 005639 362 PFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNI-FSFSFVRGLPQLQTLNV 440 (686)
Q Consensus 362 ~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l-~~~~~~~~l~~L~~L~l 440 (686)
..-. + ....++.|+.+.+.+... ........+++|+.|++++.. +... +.......+.+|+.+++
T Consensus 339 ~~~~-~-------~~~~l~~L~~l~l~~n~~-----~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 339 KFGQ-F-------PTLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp EESS-C-------CCCBCTTCCEEEEESCCS-----CCBCCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEEC
T ss_pred cccC-c-------CcccchhhhhcccccccC-----CCCcccccccccccchhhccc-cccccccccchhhhhhhhhhhc
Confidence 4211 1 123456666666655431 112233457778888877643 2221 11123445677887777
Q ss_pred eeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccc
Q 005639 441 INCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTL 520 (686)
Q Consensus 441 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 520 (686)
..+.... ++. ....+++|+.+++.++......+.... .....+..+... ......
T Consensus 405 ~~~~~~~-~~~------------~~~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~ls---~n~l~~------ 459 (635)
T 4g8a_A 405 SFNGVIT-MSS------------NFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDIS---HTHTRV------ 459 (635)
T ss_dssp CSCSEEE-ECS------------CCTTCTTCCEEECTTSEEESTTSSCTT---TTCTTCCEEECT---TSCCEE------
T ss_pred ccccccc-ccc------------cccccccccchhhhhcccccccccccc---cccccccccccc---cccccc------
Confidence 6644221 111 123466677777765543333221110 000111111110 000000
Q ss_pred cccccccccCCcccEEeecccc-cceecccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEeccccccee
Q 005639 521 MPFFNEKVVFPNLETLELCAIS-TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (686)
Q Consensus 521 ~~~~~~~~~~~~L~~L~i~~~~-l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~ 599 (686)
........+++|+.|++++|+ ...+....+. .+++|++|++++| +++.++|. .+..+++|++|+++++ +++.+
T Consensus 460 -~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 460 -AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp -CCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBC
T ss_pred -ccccccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCC
Confidence 001123467899999999984 4444444444 6899999999997 88888554 4478999999999998 57766
Q ss_pred ecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEec
Q 005639 600 VGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYG 650 (686)
Q Consensus 600 ~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~ 650 (686)
. ......+++|+.|+++++ +++.++.+......++|+.|++++
T Consensus 534 ~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 534 D-------TFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp C-------CGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred C-------hhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 2 123457889999999986 566666543332236899999975
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=260.32 Aligned_cols=435 Identities=16% Similarity=0.131 Sum_probs=296.0
Q ss_pred cEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccC
Q 005639 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVD 187 (686)
Q Consensus 111 r~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~ 187 (686)
++|++++|.+. .+|..++ ++|++|++++|.+..++ ..++.+++|++|++++|.++. |..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 68999999887 7887654 89999999999999876 578999999999999999988 67899999999999999
Q ss_pred CCCccccHHHhcCCCCCEEeccCCCCCcc--cCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCC--
Q 005639 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL-- 263 (686)
Q Consensus 188 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-- 263 (686)
|+++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+.. ..++.+++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L 140 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNI 140 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch--------------hhcccccccee
Confidence 999999987 89999999999998 665 4555 8999999999999988751 345556666
Q ss_pred cEEEEEecCC---cccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccC---
Q 005639 264 TTLEIQICDA---MILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPG--- 337 (686)
Q Consensus 264 ~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--- 337 (686)
+.|++++|.+ ...|..+..-..+.+.+...... .. ..+.+.....+++|+.|++.++..
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~-~~--------------~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK-EF--------------HFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS-CC--------------CCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred eEEEeecccccccccccccccccccceEEEEeccCc-ch--------------hhhhhhhhhcccceeeccccccccccc
Confidence 9999999886 23333321111123333211100 00 000000111245666666655430
Q ss_pred ---ccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchh-hhhcCCC--CccccCCccE
Q 005639 338 ---IKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLE-KICLGQL--RAESFYKLKI 411 (686)
Q Consensus 338 ---~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~--~~~~~~~L~~ 411 (686)
..... ..++.+++|+.|++.++...... ..........++|++|.++++. +. .++...+ ..+.+++|+.
T Consensus 206 ~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 206 CSYFLSIL--AKLQTNPKLSNLTLNNIETTWNS--FIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp THHHHHHH--HGGGGCTTCCEEEEEEEEEEHHH--HHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEE
T ss_pred cceeecch--hhhccccchhhccccccccCHHH--HHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEe
Confidence 11111 13577899999999876521100 0000011224689999998874 22 2221110 0156888999
Q ss_pred EEEecCCCCccccchhhhcCC---CCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccc
Q 005639 412 IKVRNCDKLKNIFSFSFVRGL---PQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQ 488 (686)
Q Consensus 412 L~l~~C~~l~~l~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~ 488 (686)
+++.++.- .+|.. .+..+ ++|+.|+++++.- ..++. ...+++|++|+++++. ++..
T Consensus 281 l~l~~n~~--~~p~~-~~~~~~~~~~L~~L~l~~n~l-~~~~~-------------~~~l~~L~~L~Ls~n~-l~~~--- 339 (520)
T 2z7x_B 281 HQVVSDVF--GFPQS-YIYEIFSNMNIKNFTVSGTRM-VHMLC-------------PSKISPFLHLDFSNNL-LTDT--- 339 (520)
T ss_dssp EEEEECCC--CSCTH-HHHHHHHTCCCSEEEEESSCC-CCCCC-------------CSSCCCCCEEECCSSC-CCTT---
T ss_pred ccccccce--ecchh-hhhcccccCceeEEEcCCCcc-ccccc-------------hhhCCcccEEEeECCc-cChh---
Confidence 99998654 56531 23333 6799999999763 22221 1368999999999874 2210
Q ss_pred cccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecc--cCccccccCCccEEEEec
Q 005639 489 VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWC--NQLAAVYSQNLTRLIVHG 566 (686)
Q Consensus 489 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~--~~~~~~~l~~L~~L~l~~ 566 (686)
.......+++|++|++++|+++.+.. ..+. .+++|++|++++
T Consensus 340 ----------------------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 340 ----------------------------------VFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQ 383 (520)
T ss_dssp ----------------------------------TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCS
T ss_pred ----------------------------------hhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCC
Confidence 11123468999999999998876432 1222 689999999999
Q ss_pred CCCCcc-ccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccE
Q 005639 567 CEKLKY-LFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKK 645 (686)
Q Consensus 567 C~~L~~-l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~ 645 (686)
| ++.. + |.+....+++|++|++++|. ++... .....++|+.|++++| +++.+|.... .+++|++
T Consensus 384 N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~---------~~~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~ 448 (520)
T 2z7x_B 384 N-SVSYDE-KKGDCSWTKSLLSLNMSSNI-LTDTI---------FRCLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQE 448 (520)
T ss_dssp S-CCBCCG-GGCSCCCCTTCCEEECCSSC-CCGGG---------GGSCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCE
T ss_pred C-cCCccc-ccchhccCccCCEEECcCCC-CCcch---------hhhhcccCCEEECCCC-cccccchhhh--cCCCCCE
Confidence 6 6666 6 44445678999999999995 43221 1112379999999997 6778887554 5699999
Q ss_pred EEEecCCCceecccc
Q 005639 646 LEVYGCDKVKIFTSR 660 (686)
Q Consensus 646 L~I~~C~~L~~lp~~ 660 (686)
|++++| +++.+|.+
T Consensus 449 L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 449 LNVASN-QLKSVPDG 462 (520)
T ss_dssp EECCSS-CCCCCCTT
T ss_pred EECCCC-cCCccCHH
Confidence 999998 67788876
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=270.02 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=127.3
Q ss_pred hhcCCCCEEEecCCCC-ccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCcc--cCCCC
Q 005639 83 DMLKNCPTIFLHDCKH-WEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSL--FHLPL 156 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~-~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~--i~~l~ 156 (686)
....+++.|++++|.. ..+++ ...+++|++|++++|.+. .+.+..|.++++|++|+|++|.+.. +|.. +++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 3578899999999954 55533 338999999999999887 4545568999999999999999976 5654 89999
Q ss_pred CCcEEEccCCCCCC--c-hhhcCCCCCcEEEccCCCCcc-ccHHHhcC--CCCCEEeccCCCCCcccCcccccCCCC---
Q 005639 157 NLQTLCLDRCALGD--I-AIIGNLKKLEILSLVDSNIEQ-LPEEMAQL--TQLRLFDLSGCSKLKVIPPNLLSGLSR--- 227 (686)
Q Consensus 157 ~L~~L~l~~~~l~~--~-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l--~~L~~L~l~~~~~l~~~p~~~i~~L~~--- 227 (686)
+|++|++++|.+.. + ..++++++|++|++++|.++. .|..++.+ ++|++|++++|......|.. ++.+.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~ 202 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFR 202 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccc
Confidence 99999999999887 3 679999999999999998885 45667777 89999999999855555554 566655
Q ss_pred ---CcEEEcCCCccc
Q 005639 228 ---LEDLYMGNTSVK 239 (686)
Q Consensus 228 ---L~~L~l~~~~~~ 239 (686)
|++|++++|.+.
T Consensus 203 ~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 203 NMVLEILDVSGNGWT 217 (844)
T ss_dssp TCCBSEEBCSSCCSS
T ss_pred cCceeEEecCCCcCc
Confidence 999999998665
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4e-28 Score=270.98 Aligned_cols=428 Identities=15% Similarity=0.078 Sum_probs=288.6
Q ss_pred CCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccC----------------------------------
Q 005639 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFH---------------------------------- 153 (686)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~---------------------------------- 153 (686)
.+++.|+++++.+.+.+|.. |+++++||+|+|++|.+..-+..++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999999998888865 6899999999999996521111010
Q ss_pred -------------------CCCCCcEEEcc--CCCCCC-chhhcCCCCCcEEEccCCCCcc------------------c
Q 005639 154 -------------------LPLNLQTLCLD--RCALGD-IAIIGNLKKLEILSLVDSNIEQ------------------L 193 (686)
Q Consensus 154 -------------------~l~~L~~L~l~--~~~l~~-~~~i~~L~~L~~L~l~~~~l~~------------------l 193 (686)
....++.+.+. +|.++. |..++++++|++|++++|.++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11122222222 345656 7889999999999999999998 9
Q ss_pred cHHHh--cCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc-cccccccccccccccchhhhccC------CCCc
Q 005639 194 PEEMA--QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL------SHLT 264 (686)
Q Consensus 194 p~~i~--~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l------~~L~ 264 (686)
|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +.+ ...+..++.+ ++|+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~----------~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISG----------EQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCH----------HHHHHHHHHHHHSGGGGTCC
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCcc----------ccchHHHHhhhccccCCCCC
Confidence 99988 9999999999999877788876 8999999999999997 652 0223455554 8999
Q ss_pred EEEEEecCCcccCc--cccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccCccccc
Q 005639 265 TLEIQICDAMILPK--GLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVL 342 (686)
Q Consensus 265 ~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 342 (686)
.|++++|.+..+|. .+. .+++|+.|++.++.....++
T Consensus 309 ~L~L~~n~l~~ip~~~~l~-----------------------------------------~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 309 IIYIGYNNLKTFPVETSLQ-----------------------------------------KMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EEECCSSCCSSCCCHHHHT-----------------------------------------TCTTCCEEECCSCCCEEECC
T ss_pred EEECCCCcCCccCchhhhc-----------------------------------------cCCCCCEEeCcCCcCccchh
Confidence 99999998877776 321 13455555555554332332
Q ss_pred cccccccccccceEeeccccCceeEEecccccccccccc-cchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCc
Q 005639 343 YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLL-LESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK 421 (686)
Q Consensus 343 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~ 421 (686)
.++.+++|++|+++++. ++.+|. ....+++ |++|+++++. ++.++. .+....+++|+.|++++|.--.
T Consensus 348 ---~~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 348 ---AFGSEIKLASLNLAYNQ-ITEIPA-----NFCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ---CCEEEEEESEEECCSSE-EEECCT-----TSEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCSSCTTT
T ss_pred ---hhCCCCCCCEEECCCCc-cccccH-----hhhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcCCcCCC
Confidence 35678888888888875 333321 2445677 8888887764 443321 1222235589999999865333
Q ss_pred cccchhhhc-------CCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchh
Q 005639 422 NIFSFSFVR-------GLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAA 494 (686)
Q Consensus 422 ~l~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~ 494 (686)
..|. .+. .+++|++|++++|. +..++. .....+++|++|+++++. ++.++......
T Consensus 417 ~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-----------~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~-- 479 (636)
T 4eco_A 417 VDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPK-----------ELFSTGSPLSSINLMGNM-LTEIPKNSLKD-- 479 (636)
T ss_dssp TTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCT-----------HHHHTTCCCSEEECCSSC-CSBCCSSSSEE--
T ss_pred cchh--hhcccccccccCCCCCEEECcCCc-cCcCCH-----------HHHccCCCCCEEECCCCC-CCCcCHHHhcc--
Confidence 3332 233 57799999999864 555554 012347899999999864 33443311000
Q ss_pred hhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCcccc
Q 005639 495 SQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLF 574 (686)
Q Consensus 495 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 574 (686)
..+....+++|+.|++++|+++.++..... ..+++|+.|+++++ ++..+
T Consensus 480 ----------------------------~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-~~l~~L~~L~Ls~N-~l~~i- 528 (636)
T 4eco_A 480 ----------------------------ENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVGIDLSYN-SFSKF- 528 (636)
T ss_dssp ----------------------------TTEECTTGGGCCEEECCSSCCCBCCGGGST-TTCTTCCEEECCSS-CCSSC-
T ss_pred ----------------------------ccccccccCCccEEECcCCcCCccChhhhh-ccCCCcCEEECCCC-CCCCc-
Confidence 000012345999999999988887765431 16899999999996 77776
Q ss_pred ChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEecCCCc
Q 005639 575 PSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKV 654 (686)
Q Consensus 575 p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L 654 (686)
|..+ ..+++|++|++++|..+..-. -.+..+.....+++|+.|++++|.- +.+|... +++|++|++++||-.
T Consensus 529 p~~~-~~l~~L~~L~Ls~N~~ls~N~--l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 529 PTQP-LNSSTLKGFGIRNQRDAQGNR--TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDNPNI 600 (636)
T ss_dssp CCGG-GGCSSCCEEECCSCBCTTCCB--CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSCTTC
T ss_pred Chhh-hcCCCCCEEECCCCcccccCc--ccccChHHHhcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCCCCc
Confidence 5554 589999999997654221100 0011122456799999999999864 8888652 389999999999755
Q ss_pred e
Q 005639 655 K 655 (686)
Q Consensus 655 ~ 655 (686)
.
T Consensus 601 ~ 601 (636)
T 4eco_A 601 S 601 (636)
T ss_dssp E
T ss_pred c
Confidence 3
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.7e-26 Score=248.73 Aligned_cols=348 Identities=20% Similarity=0.245 Sum_probs=234.6
Q ss_pred hhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 162 (686)
.....++++++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 346789999999998888887668889999999988876 4444 7888999999999998888776 88889999999
Q ss_pred ccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 163 l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
+++|.++..+.++++++|++|++++|.+..+| .++++++|++|++.+ . +..++. ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC---
Confidence 99998888445888999999999988888877 488889999998864 2 455555 788889999998888754
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHH
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIM 322 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 322 (686)
.+..+..+++|+.|++++|.+...++...
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------- 219 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITPLGI----------------------------------------- 219 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGGGGG-----------------------------------------
T ss_pred ----------CChhhccCCCCCEEEecCCcccccccccc-----------------------------------------
Confidence 12457778888888888776544332111
Q ss_pred HhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCC
Q 005639 323 QLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLR 402 (686)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 402 (686)
+++|+.|++.++.. ... ..+..+++|++|+++++.- . .+ .+
T Consensus 220 -l~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~l~~n~l-~-----------------------------~~----~~ 260 (466)
T 1o6v_A 220 -LTNLDELSLNGNQL-KDI---GTLASLTNLTDLDLANNQI-S-----------------------------NL----AP 260 (466)
T ss_dssp -CTTCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSSCC-C-----------------------------CC----GG
T ss_pred -cCCCCEEECCCCCc-ccc---hhhhcCCCCCEEECCCCcc-c-----------------------------cc----hh
Confidence 23344444433321 111 1234556666666665541 1 10 01
Q ss_pred ccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccc
Q 005639 403 AESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQL 482 (686)
Q Consensus 403 ~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L 482 (686)
...+++|+.|++++| .+..+++ +..+++|++|++++|. +..++. ...+++|+.|+++++. +
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISP-------------ISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGG-------------GGGCTTCSEEECCSSC-C
T ss_pred hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchh-------------hcCCCCCCEEECcCCc-C
Confidence 234566777777664 3455543 4567777777777653 333332 2356777777777652 2
Q ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEE
Q 005639 483 TSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRL 562 (686)
Q Consensus 483 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L 562 (686)
+.+. ....+++|+.|++++|.++.+. ... .+++|+.|
T Consensus 322 ~~~~---------------------------------------~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L 358 (466)
T 1o6v_A 322 SDIS---------------------------------------PVSSLTKLQRLFFYNNKVSDVS--SLA--NLTNINWL 358 (466)
T ss_dssp SCCG---------------------------------------GGGGCTTCCEEECCSSCCCCCG--GGT--TCTTCCEE
T ss_pred CCch---------------------------------------hhccCccCCEeECCCCccCCch--hhc--cCCCCCEE
Confidence 2211 0235778888888888776652 222 67888888
Q ss_pred EEecCCCCccccChhHHhhcccccEEEEeccccccee
Q 005639 563 IVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (686)
Q Consensus 563 ~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~ 599 (686)
++++| ++...+| +..+++|+.|++++|+ ++.+
T Consensus 359 ~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 359 SAGHN-QISDLTP---LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp ECCSS-CCCBCGG---GTTCTTCCEEECCCEE-EECC
T ss_pred eCCCC-ccCccch---hhcCCCCCEEeccCCc-ccCC
Confidence 88886 5666644 4678888888888884 4443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.9e-26 Score=253.11 Aligned_cols=451 Identities=16% Similarity=0.155 Sum_probs=253.0
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~ 166 (686)
.++++++++++..+|.... +++++|++++|.+. .++...|.++++|++|++++|.++.+ |+.++++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3788888888888886543 78888888888876 55555678888888888888888875 667888888888888888
Q ss_pred CCCC-chhhcCCCCCcEEEccCCCCcccc--HHHhcCCCCCEEeccCCCCCcccCcccccCCCCC--cEEEcCCCcc--c
Q 005639 167 ALGD-IAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV--K 239 (686)
Q Consensus 167 ~l~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~--~ 239 (686)
.++. |.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+ .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccc
Confidence 8887 544 7888888888888888654 678888888888888876 44432 4555555 8888888766 3
Q ss_pred cccccccccccccchhhhccCCCCcEE--EEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCC--
Q 005639 240 WEFEGLNVGRSNASLQELKLLSHLTTL--EIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS-- 315 (686)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~-- 315 (686)
. ..+..+..+.. +.+ +++.+.............+ +.++.+++..+..
T Consensus 185 ~-----------~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l-----------------~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 185 G-----------GETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNAL-----------------GHLQLSNIKLNDENC 235 (562)
T ss_dssp S-----------SSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSE-----------------EEEEEEEEECCSTTH
T ss_pred c-----------cCcccccccCc-ceEEEEecCccchhhhhhhccccc-----------------ceEEEeccccccccc
Confidence 1 12233444331 222 3333332221111111111 2233333333211
Q ss_pred --chHH--HHHHhhccceeecccccCcccccc-ccccccccccceEeeccccCceeEEecccccccccccccchhhccCC
Q 005639 316 --NVDE--VIMQLKGIEELYLDEVPGIKNVLY-DLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (686)
Q Consensus 316 --~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 390 (686)
+... .....++++.|.+.++........ .......++|++|+++++.....+|...+. ...++|+.|.+.++
T Consensus 236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~---~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT---YSETALKSLMIEHV 312 (562)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC---CCSCSCCEEEEEEE
T ss_pred chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh---cccccchheehhhc
Confidence 0111 111223444444443321111100 001112346777777766522122211100 00134444444333
Q ss_pred cchhhhhcCCCCcc------ccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCc
Q 005639 391 IHLEKICLGQLRAE------SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVD 464 (686)
Q Consensus 391 ~~l~~~~~~~~~~~------~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 464 (686)
..-. + .++.. ..++|+.|++.++. +...+ ....+++|++|+++++.--..++. .
T Consensus 313 ~~~~-~---~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~------------~ 372 (562)
T 3a79_B 313 KNQV-F---LFSKEALYSVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQ------------G 372 (562)
T ss_dssp EECC-C---SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTT------------T
T ss_pred ccce-e---ecChhhhhhhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchhh------------h
Confidence 2110 0 00100 11457778887764 22221 125677788888877643222222 2
Q ss_pred ceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccc
Q 005639 465 KIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE 544 (686)
Q Consensus 465 ~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~ 544 (686)
...+++|+.|+++++ .++.++. .......+++|++|++++|.++
T Consensus 373 ~~~l~~L~~L~L~~N-~l~~~~~-----------------------------------~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 373 CSTLKRLQTLILQRN-GLKNFFK-----------------------------------VALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCSCSSCCEEECCSS-CCCBTTH-----------------------------------HHHTTTTCTTCCEEECTTSCCB
T ss_pred hcccCCCCEEECCCC-CcCCccc-----------------------------------chhhhcCCCCCCEEECCCCcCC
Confidence 345777788887764 2332211 0001235677888888877766
Q ss_pred e-ecccCccccccCCccEEEEecCCCCccccChhHHhhc-ccccEEEEecccccceeecccccccccccccccccceeec
Q 005639 545 K-IWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNF-VQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKL 622 (686)
Q Consensus 545 ~-~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l-~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i 622 (686)
. ++..... .+++|++|++++| ++....|. .+ ++|++|++++| .++.++. ....+++|+.|++
T Consensus 417 ~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~--------~~~~l~~L~~L~L 480 (562)
T 3a79_B 417 SHAYDRTCA--WAESILVLNLSSN-MLTGSVFR----CLPPKVKVLDLHNN-RIMSIPK--------DVTHLQALQELNV 480 (562)
T ss_dssp SCCSSCCCC--CCTTCCEEECCSS-CCCGGGGS----SCCTTCSEEECCSS-CCCCCCT--------TTTSSCCCSEEEC
T ss_pred CccChhhhc--CcccCCEEECCCC-CCCcchhh----hhcCcCCEEECCCC-cCcccCh--------hhcCCCCCCEEEC
Confidence 5 5544444 5677888888775 44433222 23 57888888877 5666521 1236677888888
Q ss_pred ccCCCcCeeecCCCcCCCCCccEEEEecCC
Q 005639 623 WNLSELKTFYPGTHTSKWPMLKKLEVYGCD 652 (686)
Q Consensus 623 ~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~ 652 (686)
+++ +++.+|.... ..+++|+.|+++++|
T Consensus 481 ~~N-~l~~l~~~~~-~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 481 ASN-QLKSVPDGVF-DRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSS-CCCCCCTTST-TTCTTCCCEECCSCC
T ss_pred CCC-CCCCCCHHHH-hcCCCCCEEEecCCC
Confidence 775 4667765521 245778888877754
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.6e-26 Score=256.21 Aligned_cols=497 Identities=15% Similarity=0.144 Sum_probs=311.1
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 167 (686)
++.+-++.++..+|.... +++++|++++|.++ .++...|.++++||+|+|++|.++.+|+ +|+++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 455656666788886542 57999999999987 7887789999999999999999999865 68999999999999999
Q ss_pred CCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCccc--CcccccCCCCCcEEEcCCCcccccc
Q 005639 168 LGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 168 l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
++. +..++++++|++|++++|+++.+|.. ++++++|++|++++|. +..+ |.. ++.+++|++|++++|.+....
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccccc
Confidence 998 46789999999999999999999875 8999999999999987 5544 443 889999999999999876322
Q ss_pred ccccccccccchhhhccCCC-CcEEEEEecCCcccCccccc-cCccEEEEEEcCcc-----CCCCccccceEEEEecCC-
Q 005639 243 EGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGLFS-KKLERYKIFIGDEW-----DWSGNYKNKRVLKLKLYT- 314 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~~~~l~~l~l~~~~- 314 (686)
+ ..+..+..+.. ...++++.+.+..++..... ..+..+.+...... ........++...+....
T Consensus 190 ~--------~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 190 C--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp G--------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred c--------ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 2 23344444443 33677777777666655432 33344443321100 001111222222222110
Q ss_pred ----CchH---HHHHHhhccceeecccccCccccc-cccccccccccceEeeccccCceeEEecccccccccccccchhh
Q 005639 315 ----SNVD---EVIMQLKGIEELYLDEVPGIKNVL-YDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLV 386 (686)
Q Consensus 315 ----~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~ 386 (686)
.+.. ........+....+.......... .......+.+++.+.+.++... .+ ........|+.|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~------~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RV------KDFSYNFGWQHLE 334 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-EC------GGGGSCCCCSEEE
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cc------cccccchhhhhhh
Confidence 0000 001111122222211111000000 0011234566777776655421 11 1233456788888
Q ss_pred ccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcce
Q 005639 387 LHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKI 466 (686)
Q Consensus 387 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 466 (686)
+.++.- . ......++.|+.+.+.... ....+. ...+++|+.++++++.- ...... .....
T Consensus 335 l~~~~~-~-----~~~~~~l~~L~~l~l~~n~-~~~~~~---~~~l~~L~~L~ls~n~l-~~~~~~---------~~~~~ 394 (635)
T 4g8a_A 335 LVNCKF-G-----QFPTLKLKSLKRLTFTSNK-GGNAFS---EVDLPSLEFLDLSRNGL-SFKGCC---------SQSDF 394 (635)
T ss_dssp EESCEE-S-----SCCCCBCTTCCEEEEESCC-SCCBCC---CCBCTTCCEEECCSSCC-BEEEEC---------CHHHH
T ss_pred cccccc-c-----CcCcccchhhhhccccccc-CCCCcc---cccccccccchhhcccc-cccccc---------ccchh
Confidence 877641 1 2334568899999998854 333322 35689999999987542 221110 11224
Q ss_pred eecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccccccee
Q 005639 467 EFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (686)
Q Consensus 467 ~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~ 546 (686)
...+|+.+++..+..... ... ....+.++.+.... ... ...........+++++.++++.|.+..+
T Consensus 395 ~~~~L~~L~~~~~~~~~~-~~~----~~~l~~L~~l~l~~---~~~------~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM-SSN----FLGLEQLEHLDFQH---SNL------KQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp SCSCCCEEECCSCSEEEE-CSC----CTTCTTCCEEECTT---SEE------ESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred hhhhhhhhhccccccccc-ccc----ccccccccchhhhh---ccc------cccccccccccccccccccccccccccc
Confidence 567888888776542221 110 00111222211110 000 0011112234678899999999988877
Q ss_pred cccCccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCC
Q 005639 547 WCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 626 (686)
Q Consensus 547 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 626 (686)
...... .+++|+.|+++++.....+.|. .+..+++|++|++++| .++.+.. .....+++|++|+++++
T Consensus 461 ~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~~l~~L~~L~Ls~N- 528 (635)
T 4g8a_A 461 FNGIFN--GLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMSHN- 528 (635)
T ss_dssp CTTTTT--TCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECTTS-
T ss_pred cccccc--cchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcCh-------HHHcCCCCCCEEECCCC-
Confidence 666555 7899999999998777766453 4478999999999999 6877732 23457899999999996
Q ss_pred CcCeeecCCCcCCCCCccEEEEecC
Q 005639 627 ELKTFYPGTHTSKWPMLKKLEVYGC 651 (686)
Q Consensus 627 ~L~~l~~~~~~~~~~~L~~L~I~~C 651 (686)
+++.++.... ..+++|+.|+++++
T Consensus 529 ~l~~l~~~~~-~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 529 NFFSLDTFPY-KCLNSLQVLDYSLN 552 (635)
T ss_dssp CCCBCCCGGG-TTCTTCCEEECTTS
T ss_pred cCCCCChhHH-hCCCCCCEEECCCC
Confidence 5777765432 25699999999986
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=6.6e-26 Score=250.29 Aligned_cols=448 Identities=15% Similarity=0.106 Sum_probs=290.3
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEI 182 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~ 182 (686)
.+...++++++++.+. .+|..++ ++|++|++++|.+..+| ..++++++|++|++++|.++. |..++++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4445689999999887 6887653 79999999999999977 589999999999999999988 678999999999
Q ss_pred EEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCC
Q 005639 183 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (686)
Q Consensus 183 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 261 (686)
|++++|+++.+|.. .+++|++|++++|. +..++. ..++++++|++|++++|.+. ...+..+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-
Confidence 99999999999987 89999999999988 777652 34899999999999998765 1223444444
Q ss_pred CCcEEEEEecCC--ccc-CccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccC-
Q 005639 262 HLTTLEIQICDA--MIL-PKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPG- 337 (686)
Q Consensus 262 ~L~~L~l~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~- 337 (686)
+|+.|++++|.+ ... |..+..-..+.+.+...... . ....... ....+++|+.|++.+...
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~-~---~~~~~~~-----------~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS-L---FSVQVNM-----------SVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS-C---CCCCCEE-----------EESSEEEEEEEEEECCSTT
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCcc-c---hhhhhhh-----------cccccceEEEecccccccc
Confidence 459999999986 333 32222112233333211100 0 0000001 111246677777765421
Q ss_pred cccccc-ccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEec
Q 005639 338 IKNVLY-DLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRN 416 (686)
Q Consensus 338 ~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 416 (686)
+..... ...+..+++|+.|++.++..-.. ...........++|++|+++++.--..++...+. ...++|+.|.+.+
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~-~~~~~L~~L~~~~ 311 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWK--CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT-YSETALKSLMIEH 311 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEEECHH--HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC-CCSCSCCEEEEEE
T ss_pred cchHHHHHHHHhccCcceEEEecCCcCcHH--HHHHHHHhhhcccccEEEEeccEeeccccchhhh-cccccchheehhh
Confidence 111111 11245678889998877541100 0000001122358999999887521122111110 0125555555544
Q ss_pred CC--CCccccchhhhc---CCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCcccccccccccccc
Q 005639 417 CD--KLKNIFSFSFVR---GLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKT 491 (686)
Q Consensus 417 C~--~l~~l~~~~~~~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~ 491 (686)
.. .+ .+|.. .+. ..++|++|++.++.- ..+.. ...+++|++|+++++. ++..
T Consensus 312 ~~~~~~-~~p~~-~~~~~~~~~~L~~L~l~~n~~-~~~~~-------------~~~l~~L~~L~l~~n~-l~~~------ 368 (562)
T 3a79_B 312 VKNQVF-LFSKE-ALYSVFAEMNIKMLSISDTPF-IHMVC-------------PPSPSSFTFLNFTQNV-FTDS------ 368 (562)
T ss_dssp EEECCC-SSCHH-HHHHHHHTCCCSEEEEESSCC-CCCCC-------------CSSCCCCCEEECCSSC-CCTT------
T ss_pred ccccee-ecChh-hhhhhhccCcceEEEccCCCc-ccccC-------------ccCCCCceEEECCCCc-cccc------
Confidence 32 22 34321 111 236799999999763 22211 1368899999999863 2110
Q ss_pred chhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCc
Q 005639 492 SAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLK 571 (686)
Q Consensus 492 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~ 571 (686)
.......+++|+.|++++|.++.++........+++|++|+++++ ++.
T Consensus 369 -------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~ 416 (562)
T 3a79_B 369 -------------------------------VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLN 416 (562)
T ss_dssp -------------------------------TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCB
T ss_pred -------------------------------hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCC
Confidence 112234689999999999988865432111127899999999996 666
Q ss_pred c-ccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCCCCCccEEEEec
Q 005639 572 Y-LFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYG 650 (686)
Q Consensus 572 ~-l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~L~~L~I~~ 650 (686)
. + |.+....+++|++|++++|. ++... .....++|+.|+++++ +++.+|.+.. .+++|++|++++
T Consensus 417 ~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~---------~~~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~ 482 (562)
T 3a79_B 417 SHA-YDRTCAWAESILVLNLSSNM-LTGSV---------FRCLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVAS 482 (562)
T ss_dssp SCC-SSCCCCCCTTCCEEECCSSC-CCGGG---------GSSCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCS
T ss_pred Ccc-ChhhhcCcccCCEEECCCCC-CCcch---------hhhhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCC
Confidence 6 6 55555788999999999995 43321 0112279999999998 7889987665 569999999999
Q ss_pred CCCceecccc
Q 005639 651 CDKVKIFTSR 660 (686)
Q Consensus 651 C~~L~~lp~~ 660 (686)
+ +++.+|.+
T Consensus 483 N-~l~~l~~~ 491 (562)
T 3a79_B 483 N-QLKSVPDG 491 (562)
T ss_dssp S-CCCCCCTT
T ss_pred C-CCCCCCHH
Confidence 7 57788876
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.1e-26 Score=243.19 Aligned_cols=383 Identities=16% Similarity=0.147 Sum_probs=219.9
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc-cC-CcccCCCCCCcEEEccCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SL-PSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-~l-p~~i~~l~~L~~L~l~~~ 166 (686)
+.++..++++..+|. -.++|++|++++|.+. .++...|.++++|++|++++|.+. .+ |..++++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345666666666666 2367777777777765 444444677788888888877765 33 456777788888888887
Q ss_pred CCCC--chhhcCCCCCcEEEccCCCCcc-ccHH--HhcCCCCCEEeccCCCCCccc-CcccccCCCCCcEEEcCCCcccc
Q 005639 167 ALGD--IAIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVI-PPNLLSGLSRLEDLYMGNTSVKW 240 (686)
Q Consensus 167 ~l~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~-p~~~i~~L~~L~~L~l~~~~~~~ 240 (686)
.+.. |..++++++|++|++++|+++. .|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 7766 5677778888888888877774 3444 7777888888887776 5555 44346777888888887776652
Q ss_pred ccccccccccccchhhhccC--CCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchH
Q 005639 241 EFEGLNVGRSNASLQELKLL--SHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (686)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 318 (686)
.. ...+..+ .+|+.|+++.+.+..++........ ..
T Consensus 169 ~~-----------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~----------~~--------------------- 206 (455)
T 3v47_A 169 IC-----------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK----------CG--------------------- 206 (455)
T ss_dssp CC-----------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH----------HC---------------------
T ss_pred cC-----------hhhhhccccccccccccccCcccccchhhccccc----------cc---------------------
Confidence 21 1233333 4566777766665544432100000 00
Q ss_pred HHHHHhhccceeecccccCcccccccc-ccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhh
Q 005639 319 EVIMQLKGIEELYLDEVPGIKNVLYDL-DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC 397 (686)
Q Consensus 319 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 397 (686)
.....++|+.|++.++.........+ .....++|+.|++.++..... ......++.+....+
T Consensus 207 -~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~~~~~~---------- 269 (455)
T 3v47_A 207 -NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNFKDPDNFTF---------- 269 (455)
T ss_dssp -CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC------CTTCCSSCCCCTTTT----------
T ss_pred -cccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc------ccchhhhccCccccc----------
Confidence 00011334444444433221111100 001125667777766643211 001111111111111
Q ss_pred cCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecC
Q 005639 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLK 477 (686)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 477 (686)
..-..++|+.|++++|. +...++ ..+..+++|++|++++|. +..++. .....+++|++|+++
T Consensus 270 ----~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 270 ----KGLEASGVKTCDLSKSK-IFALLK-SVFSHFTDLEQLTLAQNE-INKIDD-----------NAFWGLTHLLKLNLS 331 (455)
T ss_dssp ----GGGTTSCCCEEECCSSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECC
T ss_pred ----ccccccCceEEEecCcc-ccccch-hhcccCCCCCEEECCCCc-ccccCh-----------hHhcCcccCCEEECC
Confidence 11224678888888854 444433 256778888888888764 333322 023456777777777
Q ss_pred ccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceecccCccccccC
Q 005639 478 FLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQ 557 (686)
Q Consensus 478 ~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~ 557 (686)
++. ++.+.. ..+..+++|++|++++|.++.+....+. .++
T Consensus 332 ~N~-l~~~~~-------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~ 371 (455)
T 3v47_A 332 QNF-LGSIDS-------------------------------------RMFENLDKLEVLDLSYNHIRALGDQSFL--GLP 371 (455)
T ss_dssp SSC-CCEECG-------------------------------------GGGTTCTTCCEEECCSSCCCEECTTTTT--TCT
T ss_pred CCc-cCCcCh-------------------------------------hHhcCcccCCEEECCCCcccccChhhcc--ccc
Confidence 652 222211 1123567788888888877766554444 577
Q ss_pred CccEEEEecCCCCccccChhHHhhcccccEEEEeccc
Q 005639 558 NLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (686)
Q Consensus 558 ~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~ 594 (686)
+|++|+++++ +++.+ |...+..+++|++|++++++
T Consensus 372 ~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 372 NLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cccEEECCCC-ccccC-CHhHhccCCcccEEEccCCC
Confidence 8888888774 67776 33444677888888887775
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.4e-26 Score=259.53 Aligned_cols=392 Identities=14% Similarity=0.134 Sum_probs=258.3
Q ss_pred CCCccCCCCC-CCCCCcEEEecCCccCC-----------------ccChhh-hhCCCCCcEEEecCCCCc-cCCcccCCC
Q 005639 96 CKHWEVPEGL-EYPQLEFFCMSPRDHSI-----------------KIPNHV-FAGMSNLRGLALSNMQFL-SLPSLFHLP 155 (686)
Q Consensus 96 ~~~~~l~~~~-~~~~Lr~L~l~~~~~~~-----------------~~~~~~-f~~l~~Lr~L~L~~~~~~-~lp~~i~~l 155 (686)
|++..+|... .+++|++|++++|.+.+ .+|..+ |.++++|++|+|++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4444477655 89999999999999886 277765 559999999999999764 599999999
Q ss_pred CCCcEEEccCCC-CCC---chhhcCCC-------CCcEEEccCCCCccccH--HHhcCCCCCEEeccCCCCCcccCcccc
Q 005639 156 LNLQTLCLDRCA-LGD---IAIIGNLK-------KLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 156 ~~L~~L~l~~~~-l~~---~~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
++|++|++++|+ ++. |..++++. +|++|++++|++..+|. .++++++|++|++++|. +..+| . +
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-F 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-h
Confidence 999999999998 773 66666665 99999999999999998 89999999999999998 77999 3 9
Q ss_pred cCCCCCcEEEcCCCccccccccccccccccchhhhccCCC-CcEEEEEecCCcccCccccc---cCccEEEEEEcCccCC
Q 005639 223 SGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGLFS---KKLERYKIFIGDEWDW 298 (686)
Q Consensus 223 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~ 298 (686)
+.+++|++|++++|.+. ..+..+..+++ |+.|++++|.+..+|..+.. .+|+.|.+..+.....
T Consensus 592 ~~L~~L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CTTSEESEEECCSSCCS------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCCCcceEEECcCCccc------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 99999999999999875 23356888888 99999999998888876543 3377777654332110
Q ss_pred CCccc-cceEEEEecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccc
Q 005639 299 SGNYK-NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYN 377 (686)
Q Consensus 299 ~~~~~-~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 377 (686)
....+ .+. .....+|+.|++.++... .++.. ....+++|+.|+++++. +..++...
T Consensus 660 ip~l~~~l~--------------~~~~~~L~~L~Ls~N~L~-~lp~~-~~~~l~~L~~L~Ls~N~-L~~ip~~~------ 716 (876)
T 4ecn_A 660 GRNISCSMD--------------DYKGINASTVTLSYNEIQ-KFPTE-LFATGSPISTIILSNNL-MTSIPENS------ 716 (876)
T ss_dssp SSSCSSCTT--------------TCCCCCEEEEECCSSCCC-SCCHH-HHHTTCCCSEEECCSCC-CSCCCTTS------
T ss_pred cccchhhhc--------------cccCCCcCEEEccCCcCC-ccCHH-HHccCCCCCEEECCCCc-CCccChHH------
Confidence 00000 000 001236777888776543 22221 13467899999999875 33332110
Q ss_pred cccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhc--CCCCCcEEEEeeccCcccccccccc
Q 005639 378 AFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVR--GLPQLQTLNVINCKNMKEIFTVGRE 455 (686)
Q Consensus 378 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~ 455 (686)
|..+ ......+++|+.|++++| +++.+|. .+. .+++|+.|++++|. +..++.
T Consensus 717 -~~~~-----------------~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~~L~Ls~N~-L~~lp~---- 770 (876)
T 4ecn_A 717 -LKPK-----------------DGNYKNTYLLTTIDLRFN-KLTSLSD--DFRATTLPYLSNMDVSYNC-FSSFPT---- 770 (876)
T ss_dssp -SSCT-----------------TSCCTTGGGCCEEECCSS-CCCCCCG--GGSTTTCTTCCEEECCSSC-CSSCCC----
T ss_pred -hccc-----------------cccccccCCccEEECCCC-CCccchH--HhhhccCCCcCEEEeCCCC-CCccch----
Confidence 0000 000122446677777765 4556654 233 67777777777653 444443
Q ss_pred CCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccE
Q 005639 456 NDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLET 535 (686)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 535 (686)
....+++|+.|+|++++.+..-. + .......+..+++|+.
T Consensus 771 --------~l~~L~~L~~L~Ls~N~~ls~N~-------------------------l-------~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 771 --------QPLNSSQLKAFGIRHQRDAEGNR-------------------------I-------LRQWPTGITTCPSLIQ 810 (876)
T ss_dssp --------GGGGCTTCCEEECCCCBCTTCCB-------------------------C-------CCCCCTTGGGCSSCCE
T ss_pred --------hhhcCCCCCEEECCCCCCccccc-------------------------c-------cccChHHHhcCCCCCE
Confidence 23456777777777654221100 0 0001122346788888
Q ss_pred EeecccccceecccCccccccCCccEEEEecCCCCccccChhHHh-------hcccccEEEEecccccc
Q 005639 536 LELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIR-------NFVQLEHLEICYCSSLE 597 (686)
Q Consensus 536 L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~-------~l~~L~~L~i~~c~~L~ 597 (686)
|++++|.+..++.. ..++|+.|+|++|+ +..+.+..+.. .+..-...+|.+|+.|.
T Consensus 811 L~Ls~N~L~~Ip~~-----l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 811 LQIGSNDIRKVDEK-----LTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp EECCSSCCCBCCSC-----CCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred EECCCCCCCccCHh-----hcCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 88888877776654 23688888888874 44443322211 11122334677888764
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=9.5e-26 Score=242.90 Aligned_cols=343 Identities=21% Similarity=0.263 Sum_probs=243.2
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEc
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l 185 (686)
.++++++|.+.++.+. .++. |..+++|++|++++|.+..+|. ++.+++|++|++++|.+.....++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 4568899999888765 5554 6788999999999999988886 8899999999999999888333899999999999
Q ss_pred cCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcE
Q 005639 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (686)
Q Consensus 186 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (686)
++|.++.+|. +.++++|++|++++|. +..++. ++++++|++|++.++ +. .+..++.+++|+.
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~-------------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT-------------DLKPLANLTTLER 181 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC-------------CCGGGTTCTTCCE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc-------------CchhhccCCCCCE
Confidence 9999888875 8899999999999887 777765 888999999988532 21 1234778888888
Q ss_pred EEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccCcccccccc
Q 005639 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (686)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 345 (686)
|++++|.+..++... .+++|+.|++.++.... ..
T Consensus 182 L~l~~n~l~~~~~l~------------------------------------------~l~~L~~L~l~~n~l~~-~~--- 215 (466)
T 1o6v_A 182 LDISSNKVSDISVLA------------------------------------------KLTNLESLIATNNQISD-IT--- 215 (466)
T ss_dssp EECCSSCCCCCGGGG------------------------------------------GCTTCSEEECCSSCCCC-CG---
T ss_pred EECcCCcCCCChhhc------------------------------------------cCCCCCEEEecCCcccc-cc---
Confidence 888877654332110 12334444444332211 11
Q ss_pred ccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccc
Q 005639 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (686)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~ 425 (686)
.++.+++|+.|+++++. ++.+ .....+++|+.|++++|. +..+++
T Consensus 216 ~~~~l~~L~~L~l~~n~------------------------------l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~ 260 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQ------------------------------LKDI----GTLASLTNLTDLDLANNQ-ISNLAP 260 (466)
T ss_dssp GGGGCTTCCEEECCSSC------------------------------CCCC----GGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred cccccCCCCEEECCCCC------------------------------cccc----hhhhcCCCCCEEECCCCc-cccchh
Confidence 13445566666665543 1111 112457899999999964 566654
Q ss_pred hhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccc
Q 005639 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTH 505 (686)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~ 505 (686)
+..+++|++|++++|. +..++. ...+++|+.|+++++. ++.++
T Consensus 261 ---~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L~~n~-l~~~~------------------- 303 (466)
T 1o6v_A 261 ---LSGLTKLTELKLGANQ-ISNISP-------------LAGLTALTNLELNENQ-LEDIS------------------- 303 (466)
T ss_dssp ---GTTCTTCSEEECCSSC-CCCCGG-------------GTTCTTCSEEECCSSC-CSCCG-------------------
T ss_pred ---hhcCCCCCEEECCCCc-cCcccc-------------ccCCCccCeEEcCCCc-ccCch-------------------
Confidence 5789999999999864 444332 3468889999998763 22211
Q ss_pred ccccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhhcccc
Q 005639 506 TLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQL 585 (686)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L 585 (686)
....+++|+.|++++|.++.+.. .. .+++|++|++++| ++..+ + .+..+++|
T Consensus 304 --------------------~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L 355 (466)
T 1o6v_A 304 --------------------PISNLKNLTYLTLYFNNISDISP--VS--SLTKLQRLFFYNN-KVSDV-S--SLANLTNI 355 (466)
T ss_dssp --------------------GGGGCTTCSEEECCSSCCSCCGG--GG--GCTTCCEEECCSS-CCCCC-G--GGTTCTTC
T ss_pred --------------------hhcCCCCCCEEECcCCcCCCchh--hc--cCccCCEeECCCC-ccCCc-h--hhccCCCC
Confidence 12468899999999998776544 22 6899999999997 77776 2 34688999
Q ss_pred cEEEEecccccceeecccccccccccccccccceeecccCC
Q 005639 586 EHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 626 (686)
Q Consensus 586 ~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 626 (686)
++|++++|+ ++.+. +...+++|+.|++.+|+
T Consensus 356 ~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHNQ-ISDLT---------PLANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSC-CCBCG---------GGTTCTTCCEEECCCEE
T ss_pred CEEeCCCCc-cCccc---------hhhcCCCCCEEeccCCc
Confidence 999999984 55442 24578899999999874
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1e-25 Score=233.10 Aligned_cols=126 Identities=23% Similarity=0.348 Sum_probs=77.6
Q ss_pred CCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEcc
Q 005639 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLV 186 (686)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~ 186 (686)
+++|++|++.++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.+.++++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 344555555554443 3332 4556666666666666666655 66666666666666666665556666667777776
Q ss_pred CCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 187 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+|.+..+|. +.++++|++|++++|.....++. ++.+++|++|++++|.+.
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC
Confidence 666666655 66666777777766654554444 666666777766666543
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=4.1e-26 Score=243.47 Aligned_cols=408 Identities=18% Similarity=0.126 Sum_probs=183.5
Q ss_pred cCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCC-------------CcEEEecCCCCccCCc
Q 005639 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSN-------------LRGLALSNMQFLSLPS 150 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~-------------Lr~L~L~~~~~~~lp~ 150 (686)
...++.++++++.+..+|... .+++|++|++++|.+.+.+|.. +.++++ +++|+++++.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 355666777777666666544 6667777777666655555544 244444 3666666666666664
Q ss_pred ccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCc
Q 005639 151 LFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (686)
Q Consensus 151 ~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (686)
. .++|++|++++|.++. |. .+.+|++|++++|.++.+|.. .++|++|++++|. ++.+|. ++++++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCCC
Confidence 2 3566667776666665 32 235666667766666655531 1566667766665 555663 66666677
Q ss_pred EEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEE
Q 005639 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLK 309 (686)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~ 309 (686)
+|++++|.+.... . ...+|+.|++++|.+..+|...
T Consensus 157 ~L~l~~N~l~~lp------------~---~~~~L~~L~L~~n~l~~l~~~~----------------------------- 192 (454)
T 1jl5_A 157 IIDVDNNSLKKLP------------D---LPPSLEFIAAGNNQLEELPELQ----------------------------- 192 (454)
T ss_dssp EEECCSSCCSCCC------------C---CCTTCCEEECCSSCCSSCCCCT-----------------------------
T ss_pred EEECCCCcCcccC------------C---CcccccEEECcCCcCCcCcccc-----------------------------
Confidence 7766666554100 0 1135666666666555444211
Q ss_pred EecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccC
Q 005639 310 LKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHN 389 (686)
Q Consensus 310 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~ 389 (686)
.+++|+.|++.++... .+.. ..++|++|+++++. ++.++ ....+++|++|++++
T Consensus 193 -------------~l~~L~~L~l~~N~l~-~l~~-----~~~~L~~L~l~~n~-l~~lp------~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 193 -------------NLPFLTAIYADNNSLK-KLPD-----LPLSLESIVAGNNI-LEELP------ELQNLPFLTTIYADN 246 (454)
T ss_dssp -------------TCTTCCEEECCSSCCS-SCCC-----CCTTCCEEECCSSC-CSSCC------CCTTCTTCCEEECCS
T ss_pred -------------CCCCCCEEECCCCcCC-cCCC-----CcCcccEEECcCCc-CCccc------ccCCCCCCCEEECCC
Confidence 1234444444443321 1111 12467777777764 33332 133566667776666
Q ss_pred CcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeec
Q 005639 390 LIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFS 469 (686)
Q Consensus 390 ~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 469 (686)
+. ++.++ ..+++|+.|++++| +++.+|. .+++|++|++++|. +..++. ..+
T Consensus 247 N~-l~~l~------~~~~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N~-l~~l~~---------------~~~ 297 (454)
T 1jl5_A 247 NL-LKTLP------DLPPSLEALNVRDN-YLTDLPE-----LPQSLTFLDVSENI-FSGLSE---------------LPP 297 (454)
T ss_dssp SC-CSSCC------SCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSEESC---------------CCT
T ss_pred Cc-CCccc------ccccccCEEECCCC-cccccCc-----ccCcCCEEECcCCc-cCcccC---------------cCC
Confidence 42 22221 12466777777664 3555543 13667777776643 333332 235
Q ss_pred ccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceeccc
Q 005639 470 QLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCN 549 (686)
Q Consensus 470 ~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~ 549 (686)
+|+.|+++++. ++.++ ..+++|++|++++|+++.++.
T Consensus 298 ~L~~L~l~~N~-l~~i~-----------------------------------------~~~~~L~~L~Ls~N~l~~lp~- 334 (454)
T 1jl5_A 298 NLYYLNASSNE-IRSLC-----------------------------------------DLPPSLEELNVSNNKLIELPA- 334 (454)
T ss_dssp TCCEEECCSSC-CSEEC-----------------------------------------CCCTTCCEEECCSSCCSCCCC-
T ss_pred cCCEEECcCCc-CCccc-----------------------------------------CCcCcCCEEECCCCccccccc-
Confidence 66666666542 11110 123588899998887776543
Q ss_pred CccccccCCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccc--------cccccccccceee
Q 005639 550 QLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEA--------TTTFVFPKVTFLK 621 (686)
Q Consensus 550 ~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~--------~~~~~~~~L~~L~ 621 (686)
.+++|++|++++| +++.++. .+++|++|++++|+ ++.++.-..+... .....+++|+.|+
T Consensus 335 -----~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 335 -----LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----------------
T ss_pred -----cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 3578999999886 7777733 36889999998883 4443111111000 0001126677777
Q ss_pred cccCCCcCeeecCCCcCCCCCccEEEEecCCCceeccccccchh
Q 005639 622 LWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQ 665 (686)
Q Consensus 622 i~~c~~L~~l~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~~~~ 665 (686)
+++++ ++.++. ..++++.|.+.+|.--..+|.....+.
T Consensus 403 ls~N~-l~~~~~-----iP~sl~~L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 403 VETNP-LREFPD-----IPESVEDLRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp --------------------------------------------
T ss_pred CCCCc-CCcccc-----chhhHhheeCcCcccCCccccCHHHhh
Confidence 77654 333221 115566777777654444444443333
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.1e-25 Score=238.64 Aligned_cols=368 Identities=19% Similarity=0.180 Sum_probs=242.0
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
..+.....+|. .++++++|++++|.+..++. ...+++|++|++++|.+...++...|.++++|++|++++|.+..+
T Consensus 17 c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 17 CINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred cCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 44455555555 66899999999999977743 339999999999999887788888899999999999999999875
Q ss_pred -CcccCCCCCCcEEEccCCCCCC--chh--hcCCCCCcEEEccCCCCccc-cHH-HhcCCCCCEEeccCCCCCcccCccc
Q 005639 149 -PSLFHLPLNLQTLCLDRCALGD--IAI--IGNLKKLEILSLVDSNIEQL-PEE-MAQLTQLRLFDLSGCSKLKVIPPNL 221 (686)
Q Consensus 149 -p~~i~~l~~L~~L~l~~~~l~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~~p~~~ 221 (686)
|..++++++|++|++++|.++. +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..+++..
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 173 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEED 173 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTT
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhh
Confidence 7889999999999999999987 554 99999999999999999977 555 8999999999999998 66665544
Q ss_pred ccCC--CCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCC
Q 005639 222 LSGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWS 299 (686)
Q Consensus 222 i~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 299 (686)
++.+ .+|+.|+++++.+....+. .........+..+++|+.|++++|.+..........
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---------------- 234 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEY---WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD---------------- 234 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTT---CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH----------------
T ss_pred hhccccccccccccccCcccccchh---hccccccccccccceeeeEecCCCcccccchhhhhc----------------
Confidence 6665 7899999999876522110 000011122445678888888877654321110000
Q ss_pred CccccceEEEEecCCCchHHHHHHhhccceeecccccCccccccc--------ccc--ccccccceEeeccccCceeEEe
Q 005639 300 GNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYD--------LDI--EGFLQLKHLHVQNNPFILFIVD 369 (686)
Q Consensus 300 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~--~~l~~L~~L~l~~~~~l~~l~~ 369 (686)
.....+++.|.+.++......... ..+ ...++|++|+++++... .
T Consensus 235 ---------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~--- 289 (455)
T 3v47_A 235 ---------------------AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-A--- 289 (455)
T ss_dssp ---------------------HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-E---
T ss_pred ---------------------cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc-c---
Confidence 000134444444443221111000 000 11245555555554311 1
Q ss_pred cccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCcccc
Q 005639 370 SMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEI 449 (686)
Q Consensus 370 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 449 (686)
.. +...+.+++|+.|++++| +++.+++ ..+..+++|++|++++|. +..+
T Consensus 290 --------------------------~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~ 338 (455)
T 3v47_A 290 --------------------------LL--KSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQNF-LGSI 338 (455)
T ss_dssp --------------------------EC--TTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEE
T ss_pred --------------------------cc--hhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCCc-cCCc
Confidence 10 111244667777777764 3455533 245667777777777753 3333
Q ss_pred ccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Q 005639 450 FTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVV 529 (686)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (686)
+. .....+++|++|+++++. ++.+.. ..+..
T Consensus 339 ~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~-------------------------------------~~~~~ 369 (455)
T 3v47_A 339 DS-----------RMFENLDKLEVLDLSYNH-IRALGD-------------------------------------QSFLG 369 (455)
T ss_dssp CG-----------GGGTTCTTCCEEECCSSC-CCEECT-------------------------------------TTTTT
T ss_pred Ch-----------hHhcCcccCCEEECCCCc-ccccCh-------------------------------------hhccc
Confidence 22 023456777777777753 222211 11245
Q ss_pred CCcccEEeecccccceecccCccccccCCccEEEEecC
Q 005639 530 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC 567 (686)
Q Consensus 530 ~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C 567 (686)
+++|++|++++|+++.++...+. .+++|++|+++++
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N 405 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 405 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred cccccEEECCCCccccCCHhHhc--cCCcccEEEccCC
Confidence 78899999999988887766555 6889999999885
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=5.9e-25 Score=234.69 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=129.3
Q ss_pred hhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 162 (686)
...+++++|+++++.+..+|....+++|++|++++|.+.+ ++ |..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 3467888888888888777765588888888888887763 44 677888888888888888775 78888888888
Q ss_pred ccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 163 l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
+++|.++..+ ++++++|++|++++|+++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+..
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--
Confidence 8888887743 788888888888888888775 7788888888888886666663 6788888888888887651
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCccc
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (686)
+ .++.+++|+.|++++|.+..+
T Consensus 185 -----------l-~l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 185 -----------L-DVSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp -----------C-CCTTCTTCCEEECCSSCCSCC
T ss_pred -----------e-ccccCCCCCEEECcCCcCCee
Confidence 1 156677788888777765543
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.6e-24 Score=230.82 Aligned_cols=172 Identities=22% Similarity=0.303 Sum_probs=129.4
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
+.++.++..+..+|... .+++++|++++|.+. .++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 56777777777777644 357888888888776 55555678888888888888888775 6778888888888888888
Q ss_pred CCC-c-hhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccc
Q 005639 168 LGD-I-AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (686)
Q Consensus 168 l~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (686)
++. | ..++++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 166 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS---- 166 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc----
Confidence 887 4 4578888888888888888865 4457888888888888876 666665557888888888888876651
Q ss_pred ccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
.....+..+++|+.|+++++.+.
T Consensus 167 -------~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 167 -------IPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp -------CCHHHHTTCTTCCEEEEESCCCC
T ss_pred -------cChhHhcccCCCcEEeCCCCcCc
Confidence 22345777777777777766543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.3e-24 Score=220.92 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=232.2
Q ss_pred hhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 82 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
....++++++++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 3467899999999999998887779999999999999877 5555 789999999999999999886 59999999999
Q ss_pred EccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccc
Q 005639 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 162 ~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
++++|.+...+.+.++++|++|++++|.....+..+.++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE-- 190 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC--
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc--
Confidence 999999999555999999999999999544444459999999999999987 777776 899999999999999765
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHH
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVI 321 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 321 (686)
.+..+..+++|+.++++++.+...+....
T Consensus 191 -----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------------- 219 (347)
T 4fmz_A 191 -----------DISPLASLTSLHYFTAYVNQITDITPVAN---------------------------------------- 219 (347)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCCCGGGGG----------------------------------------
T ss_pred -----------ccccccCCCccceeecccCCCCCCchhhc----------------------------------------
Confidence 12337889999999999887665543211
Q ss_pred HHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCC
Q 005639 322 MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQL 401 (686)
Q Consensus 322 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 401 (686)
+++|+.|++.++.... .. .+..+++|++|+++++. ++.+ .....+++|++|.++++ .++.+ .
T Consensus 220 --~~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~----~ 281 (347)
T 4fmz_A 220 --MTRLNSLKIGNNKITD-LS---PLANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDI----S 281 (347)
T ss_dssp --CTTCCEEECCSSCCCC-CG---GGTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCC----G
T ss_pred --CCcCCEEEccCCccCC-Cc---chhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCC----h
Confidence 2445555555543221 11 14567888888888774 3322 13456778888888776 33333 1
Q ss_pred CccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccc
Q 005639 402 RAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (686)
Q Consensus 402 ~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 480 (686)
....+++|+.|++++|. ++..++ ..+..+++|++|++++|+ +..++. ...+++|++|++++++
T Consensus 282 ~~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-------------LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-------------GGGCTTCSEESSSCC-
T ss_pred hhcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-cccccC-------------hhhhhccceeehhhhc
Confidence 24568899999999974 555443 356789999999999876 444433 3468899999998864
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-24 Score=226.56 Aligned_cols=154 Identities=16% Similarity=0.275 Sum_probs=129.6
Q ss_pred CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCC
Q 005639 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKL 180 (686)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L 180 (686)
...+++++.|++.++.+. .+|..+|..+++|++|+++++.+..++. .++.+++|++|++++|.++. |..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346789999999998766 7888889999999999999999988654 78999999999999999888 5668999999
Q ss_pred cEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhcc
Q 005639 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (686)
Q Consensus 181 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (686)
++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB--------------CCGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc--------------ccccc
Confidence 9999999999999987 5899999999999987 777777668999999999999987651 13556
Q ss_pred CCCCcEEEEEecCC
Q 005639 260 LSHLTTLEIQICDA 273 (686)
Q Consensus 260 l~~L~~L~l~~~~~ 273 (686)
+++|+.|+++++.+
T Consensus 185 l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 185 IPSLFHANVSYNLL 198 (390)
T ss_dssp CTTCSEEECCSSCC
T ss_pred ccccceeecccccc
Confidence 67788887776553
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=8.7e-25 Score=233.16 Aligned_cols=367 Identities=21% Similarity=0.224 Sum_probs=233.2
Q ss_pred hhcCCCCEEEecCCCCc-cCCCCC-CCCC-------------CcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc
Q 005639 83 DMLKNCPTIFLHDCKHW-EVPEGL-EYPQ-------------LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~-~l~~~~-~~~~-------------Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
....+++++++++|.+. .+|... .+++ ++.|++++|.+. .+|. -.++|++|++++|.++.
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE 105 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCc
Confidence 45677788888888774 566544 5554 489999998876 4554 24789999999999988
Q ss_pred CCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCC
Q 005639 148 LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (686)
Q Consensus 148 lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (686)
+|.. +.+|++|++++|.++..+.+ .++|++|++++|.++.+| +++++++|++|++++|. ++.+|.. ..+
T Consensus 106 lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~----~~~ 174 (454)
T 1jl5_A 106 LPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL----PPS 174 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC----CTT
T ss_pred cccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCC----ccc
Confidence 8864 47899999999988773222 268999999999999998 69999999999999987 7778763 258
Q ss_pred CcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceE
Q 005639 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRV 307 (686)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 307 (686)
|++|++++|.+.. +..++.+++|+.|++++|.+..+|...
T Consensus 175 L~~L~L~~n~l~~-------------l~~~~~l~~L~~L~l~~N~l~~l~~~~--------------------------- 214 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-------------LPELQNLPFLTAIYADNNSLKKLPDLP--------------------------- 214 (454)
T ss_dssp CCEEECCSSCCSS-------------CCCCTTCTTCCEEECCSSCCSSCCCCC---------------------------
T ss_pred ccEEECcCCcCCc-------------CccccCCCCCCEEECCCCcCCcCCCCc---------------------------
Confidence 9999999987651 235788899999999988876655431
Q ss_pred EEEecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhc
Q 005639 308 LKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVL 387 (686)
Q Consensus 308 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l 387 (686)
++|+.|++.++... .+. .++.+++|++|+++++. ++.++ ..+++|+.|++
T Consensus 215 -----------------~~L~~L~l~~n~l~-~lp---~~~~l~~L~~L~l~~N~-l~~l~--------~~~~~L~~L~l 264 (454)
T 1jl5_A 215 -----------------LSLESIVAGNNILE-ELP---ELQNLPFLTTIYADNNL-LKTLP--------DLPPSLEALNV 264 (454)
T ss_dssp -----------------TTCCEEECCSSCCS-SCC---CCTTCTTCCEEECCSSC-CSSCC--------SCCTTCCEEEC
T ss_pred -----------------CcccEEECcCCcCC-ccc---ccCCCCCCCEEECCCCc-CCccc--------ccccccCEEEC
Confidence 34555555555322 222 25678888899888875 33322 13478888888
Q ss_pred cCCcchhhhhcCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCccee
Q 005639 388 HNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIE 467 (686)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 467 (686)
+++. ++.++ ..+++|+.|++++| +++.+|.. .++|++|++++|. +..++. .
T Consensus 265 ~~N~-l~~l~------~~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~N~-l~~i~~---------------~ 315 (454)
T 1jl5_A 265 RDNY-LTDLP------ELPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASSNE-IRSLCD---------------L 315 (454)
T ss_dssp CSSC-CSCCC------CCCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCSSC-CSEECC---------------C
T ss_pred CCCc-ccccC------cccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcCCc-CCcccC---------------C
Confidence 8764 33331 23578999999985 46666532 3789999998764 444332 2
Q ss_pred ecccceEecCccccccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeecccccceec
Q 005639 468 FSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIW 547 (686)
Q Consensus 468 ~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~ 547 (686)
.++|++|+++++. ++.++. .+++|++|++++|.++.++
T Consensus 316 ~~~L~~L~Ls~N~-l~~lp~-----------------------------------------~~~~L~~L~L~~N~l~~lp 353 (454)
T 1jl5_A 316 PPSLEELNVSNNK-LIELPA-----------------------------------------LPPRLERLIASFNHLAEVP 353 (454)
T ss_dssp CTTCCEEECCSSC-CSCCCC-----------------------------------------CCTTCCEEECCSSCCSCCC
T ss_pred cCcCCEEECCCCc-cccccc-----------------------------------------cCCcCCEEECCCCcccccc
Confidence 3588999988742 333221 3578999999999888766
Q ss_pred ccCccccccCCccEEEEecCCCCcccc--ChhHHhhc-------------ccccEEEEecccccceeecccccccccccc
Q 005639 548 CNQLAAVYSQNLTRLIVHGCEKLKYLF--PSSMIRNF-------------VQLEHLEICYCSSLESIVGKESGEEATTTF 612 (686)
Q Consensus 548 ~~~~~~~~l~~L~~L~l~~C~~L~~l~--p~~~~~~l-------------~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~ 612 (686)
. .+++|++|+++++ ++..++ |.++ ..+ ++|++|++++++ ++.+. .
T Consensus 354 ~------~l~~L~~L~L~~N-~l~~l~~ip~~l-~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~-----------~ 413 (454)
T 1jl5_A 354 E------LPQNLKQLHVEYN-PLREFPDIPESV-EDLRMNSHLAEVPELPQNLKQLHVETNP-LREFP-----------D 413 (454)
T ss_dssp C------CCTTCCEEECCSS-CCSSCCCCCTTC-CEEECCC---------------------------------------
T ss_pred c------hhhhccEEECCCC-CCCcCCCChHHH-HhhhhcccccccccccCcCCEEECCCCc-CCccc-----------c
Confidence 5 2588999999885 666531 3332 445 789999999874 44431 1
Q ss_pred cccccceeecccCC
Q 005639 613 VFPKVTFLKLWNLS 626 (686)
Q Consensus 613 ~~~~L~~L~i~~c~ 626 (686)
.+++++.|.+.+|.
T Consensus 414 iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 414 IPESVEDLRMNSER 427 (454)
T ss_dssp --------------
T ss_pred chhhHhheeCcCcc
Confidence 35678888888774
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8.3e-24 Score=225.81 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=113.9
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEc
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l 185 (686)
.+++|++|++++|.+. .+|. |..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 5678889999888776 4452 688889999999999888886 888889999999998888743 888889999999
Q ss_pred cCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcE
Q 005639 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (686)
Q Consensus 186 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (686)
++|+++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|.... .+ .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~------------~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKIT------------KL-DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCC------------CC-CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccc------------cc-ccccCCcCCE
Confidence 988888886 7888899999998877 66664 6888888888888874331 11 3566777888
Q ss_pred EEEEecCCccc
Q 005639 266 LEIQICDAMIL 276 (686)
Q Consensus 266 L~l~~~~~~~~ 276 (686)
|++++|.+..+
T Consensus 175 L~ls~n~l~~l 185 (457)
T 3bz5_A 175 LDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCCCC
T ss_pred EECCCCcccee
Confidence 87777665443
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.9e-23 Score=224.47 Aligned_cols=314 Identities=18% Similarity=0.245 Sum_probs=207.4
Q ss_pred cEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccC
Q 005639 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVD 187 (686)
Q Consensus 111 r~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~ 187 (686)
+.++..++.+. .+|..+ .+++++|++++|.++.+ |..+.++++|++|++++|.+.. |..++++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666555 666644 35788999999988876 4678889999999999998887 67888999999999999
Q ss_pred CCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEE
Q 005639 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (686)
Q Consensus 188 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (686)
|.++.+|.. +.++++|++|++++|. +..+++..++++++|++|++++|.+.. .....+..+++|+.|
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVY-----------ISHRAFSGLNSLEQL 157 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCE-----------ECTTSSTTCTTCCEE
T ss_pred CcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccce-----------eChhhccCCCCCCEE
Confidence 988888875 6888999999999887 666665558888999999988887652 223456777888888
Q ss_pred EEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccCccccccccc
Q 005639 267 EIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLD 346 (686)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 346 (686)
++++|.+..++...
T Consensus 158 ~l~~n~l~~~~~~~------------------------------------------------------------------ 171 (477)
T 2id5_A 158 TLEKCNLTSIPTEA------------------------------------------------------------------ 171 (477)
T ss_dssp EEESCCCSSCCHHH------------------------------------------------------------------
T ss_pred ECCCCcCcccChhH------------------------------------------------------------------
Confidence 88877655443321
Q ss_pred cccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccch
Q 005639 347 IEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSF 426 (686)
Q Consensus 347 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 426 (686)
+.++++|+.|++.++. +..++. .....+++|+.|++.+|+.+..+++
T Consensus 172 l~~l~~L~~L~l~~n~-i~~~~~-------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~- 218 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLN-INAIRD-------------------------------YSFKRLYRLKVLEISHWPYLDTMTP- 218 (477)
T ss_dssp HTTCTTCCEEEEESCC-CCEECT-------------------------------TCSCSCTTCCEEEEECCTTCCEECT-
T ss_pred hcccCCCcEEeCCCCc-CcEeCh-------------------------------hhcccCcccceeeCCCCccccccCc-
Confidence 2334555555555543 111100 0012234455555555554444443
Q ss_pred hhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccccccccccchhhhhccccccccc
Q 005639 427 SFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHT 506 (686)
Q Consensus 427 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~l~~l~~~~ 506 (686)
......+|++|++++|. +..++. .....+++|+.|+|+++. ++.++.
T Consensus 219 -~~~~~~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~Ls~n~-l~~~~~------------------- 265 (477)
T 2id5_A 219 -NCLYGLNLTSLSITHCN-LTAVPY-----------LAVRHLVYLRFLNLSYNP-ISTIEG------------------- 265 (477)
T ss_dssp -TTTTTCCCSEEEEESSC-CCSCCH-----------HHHTTCTTCCEEECCSSC-CCEECT-------------------
T ss_pred -ccccCccccEEECcCCc-ccccCH-----------HHhcCccccCeeECCCCc-CCccCh-------------------
Confidence 11223355555555542 333321 012234555555555542 222111
Q ss_pred cccccccccccccccccccccccCCcccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhhccccc
Q 005639 507 LPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLE 586 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~ 586 (686)
..+..+++|++|++++|.++.+....+. .+++|+.|+++++ +++.+ +...+..+++|+
T Consensus 266 ------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~ 323 (477)
T 2id5_A 266 ------------------SMLHELLRLQEIQLVGGQLAVVEPYAFR--GLNYLRVLNVSGN-QLTTL-EESVFHSVGNLE 323 (477)
T ss_dssp ------------------TSCTTCTTCCEEECCSSCCSEECTTTBT--TCTTCCEEECCSS-CCSCC-CGGGBSCGGGCC
T ss_pred ------------------hhccccccCCEEECCCCccceECHHHhc--CcccCCEEECCCC-cCcee-CHhHcCCCcccC
Confidence 1123678999999999999887666665 7899999999996 88888 445557899999
Q ss_pred EEEEeccc
Q 005639 587 HLEICYCS 594 (686)
Q Consensus 587 ~L~i~~c~ 594 (686)
+|++++++
T Consensus 324 ~L~l~~N~ 331 (477)
T 2id5_A 324 TLILDSNP 331 (477)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99999886
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=221.60 Aligned_cols=302 Identities=18% Similarity=0.197 Sum_probs=227.4
Q ss_pred hcCCCCEEEecCCCCccCCCCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcE
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQT 160 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~ 160 (686)
...+++++++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4689999999999999998753 8999999999999876 666667899999999999999999875 55899999999
Q ss_pred EEccCCCCCC-chh-hcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 161 LCLDRCALGD-IAI-IGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 161 L~l~~~~l~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
|++++|.++. |.. ++++++|++|++++|.+..++. .++++++|++|++++|. ++.++ ++.+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence 9999999998 554 6899999999999999998765 48999999999999987 77775 5788999999999886
Q ss_pred cccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCch
Q 005639 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNV 317 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~ 317 (686)
+. .+....+|+.|+++++.+..++...
T Consensus 198 l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~------------------------------------- 224 (390)
T 3o6n_A 198 LS----------------TLAIPIAVEELDASHNSINVVRGPV------------------------------------- 224 (390)
T ss_dssp CS----------------EEECCSSCSEEECCSSCCCEEECCC-------------------------------------
T ss_pred cc----------------ccCCCCcceEEECCCCeeeeccccc-------------------------------------
Confidence 54 2344568999999988876654432
Q ss_pred HHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhh
Q 005639 318 DEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC 397 (686)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 397 (686)
+++|+.|++.++.... . ..+..+++|++|+++++. ++.++. .....+++|+.|.++++ .++.+.
T Consensus 225 ------~~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~ 288 (390)
T 3o6n_A 225 ------NVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALN 288 (390)
T ss_dssp ------CSSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCSS-CCCEEE
T ss_pred ------cccccEEECCCCCCcc-c---HHHcCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCCC-cCcccC
Confidence 1334444444443221 1 134667888888888775 333211 12345778888888775 344332
Q ss_pred cCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecC
Q 005639 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLK 477 (686)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 477 (686)
.....+++|+.|++++| +++.+|+ .+..+++|++|++++|. +..++. ..+++|+.|+++
T Consensus 289 ---~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~L~~L~l~ 347 (390)
T 3o6n_A 289 ---LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLKL--------------STHHTLKNLTLS 347 (390)
T ss_dssp ---CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCCC--------------CTTCCCSEEECC
T ss_pred ---cccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeCc--------------hhhccCCEEEcC
Confidence 22356788999999886 5677765 45678899999998865 444432 457888888888
Q ss_pred ccc
Q 005639 478 FLP 480 (686)
Q Consensus 478 ~c~ 480 (686)
+.+
T Consensus 348 ~N~ 350 (390)
T 3o6n_A 348 HND 350 (390)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=231.43 Aligned_cols=155 Identities=15% Similarity=0.263 Sum_probs=130.9
Q ss_pred CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCC
Q 005639 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKL 180 (686)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L 180 (686)
...+++++.+++.++.+. .+|..+|.++++|++|++++|.+..+| ..++.+++|++|++++|.+.. |..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346788999999998776 788888999999999999999998865 488999999999999999988 4567999999
Q ss_pred cEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhcc
Q 005639 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (686)
Q Consensus 181 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (686)
++|++++|.++.+|.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+.. ..++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~ 190 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLSL 190 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB--------------CCGGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC--------------cChhh
Confidence 9999999999999987 5899999999999987 777777668999999999999987651 12556
Q ss_pred CCCCcEEEEEecCCc
Q 005639 260 LSHLTTLEIQICDAM 274 (686)
Q Consensus 260 l~~L~~L~l~~~~~~ 274 (686)
+++|+.|++++|.+.
T Consensus 191 l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 191 IPSLFHANVSYNLLS 205 (597)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred hhhhhhhhcccCccc
Confidence 778888887766543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=225.58 Aligned_cols=302 Identities=18% Similarity=0.197 Sum_probs=224.6
Q ss_pred hcCCCCEEEecCCCCccCCCCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcE
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQT 160 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~ 160 (686)
...+++.+++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|+|++|.+..+|. .++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578999999999999998754 7899999999999887 5666668999999999999999998765 5699999999
Q ss_pred EEccCCCCCC-chh-hcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 161 LCLDRCALGD-IAI-IGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 161 L~l~~~~l~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
|++++|.++. |.. ++++++|++|++++|.+..+|. .++++++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence 9999999998 544 6999999999999999997765 59999999999999987 77776 5778999999999886
Q ss_pred cccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCch
Q 005639 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNV 317 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~ 317 (686)
+. .+....+|+.|++++|.+..++....
T Consensus 204 l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~~------------------------------------ 231 (597)
T 3oja_B 204 LS----------------TLAIPIAVEELDASHNSINVVRGPVN------------------------------------ 231 (597)
T ss_dssp CS----------------EEECCTTCSEEECCSSCCCEEECSCC------------------------------------
T ss_pred cc----------------cccCCchhheeeccCCcccccccccC------------------------------------
Confidence 64 24455689999999888766554321
Q ss_pred HHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhh
Q 005639 318 DEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKIC 397 (686)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 397 (686)
++|+.|++.++.... . ..+..+++|+.|+++++. +..++. .....+++|+.|.++++ .+..++
T Consensus 232 -------~~L~~L~L~~n~l~~-~---~~l~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~l~ 294 (597)
T 3oja_B 232 -------VELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALN 294 (597)
T ss_dssp -------SCCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECTTS-CCCEEE
T ss_pred -------CCCCEEECCCCCCCC-C---hhhccCCCCCEEECCCCc-cCCCCH----HHhcCccCCCEEECCCC-CCCCCC
Confidence 234444444443221 1 234567778888887765 332211 12345677777777774 344332
Q ss_pred cCCCCccccCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecC
Q 005639 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLK 477 (686)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 477 (686)
.....+|+|+.|++++| .+..+|. .+..+++|+.|++++|. +..++. ..+++|+.|+|+
T Consensus 295 ---~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~L~~L~l~ 353 (597)
T 3oja_B 295 ---LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLKL--------------STHHTLKNLTLS 353 (597)
T ss_dssp ---CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCCC--------------CTTCCCSEEECC
T ss_pred ---cccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcCh--------------hhcCCCCEEEee
Confidence 22345788888888885 4566765 45678888888888865 333332 457888888888
Q ss_pred ccc
Q 005639 478 FLP 480 (686)
Q Consensus 478 ~c~ 480 (686)
+++
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.2e-21 Score=200.13 Aligned_cols=131 Identities=22% Similarity=0.354 Sum_probs=99.6
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEecc
Q 005639 131 GMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (686)
Q Consensus 131 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 209 (686)
...++++|+++++.+..+|..++++++|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3578899999999988899888889999999999998888 788899999999999999888999889999999999999
Q ss_pred CCCCCcccCcccccC---------CCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 210 GCSKLKVIPPNLLSG---------LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 210 ~~~~l~~~p~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
+|.....+|.. ++. +++|++|++++|.+. ..+..++.+++|+.|++++|.+.
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCC
Confidence 88777888875 333 566666666555443 11234555555555555555433
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=7.5e-23 Score=227.85 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=66.7
Q ss_pred hCCCCCcEEEecCCCCcc-CCcccCC-C-CCCcEEEccCCC-CCC---chhhcCCCCCcEEEccCCCCcc-----ccHHH
Q 005639 130 AGMSNLRGLALSNMQFLS-LPSLFHL-P-LNLQTLCLDRCA-LGD---IAIIGNLKKLEILSLVDSNIEQ-----LPEEM 197 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~-lp~~i~~-l-~~L~~L~l~~~~-l~~---~~~i~~L~~L~~L~l~~~~l~~-----lp~~i 197 (686)
..+++|++|+|+++.+.. .+..+.. + .+|++|++++|. +.. +....++++|++|++++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 356666666666665542 2222333 2 236666666665 221 1223356666666666665432 33334
Q ss_pred hcCCCCCEEeccCCCCCcccCc----ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEe
Q 005639 198 AQLTQLRLFDLSGCSKLKVIPP----NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (686)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (686)
..+++|++|+++++. +..+.. ..+.++++|++|++.+|.+. .....++.+++|+.|+++.
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence 566666666666655 331211 11345666666666665443 1234556666666666654
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.1e-22 Score=226.35 Aligned_cols=440 Identities=13% Similarity=0.079 Sum_probs=239.0
Q ss_pred cChhhhhCCCCCcEEEecCCCC----ccCCcccC------------CCCCCcEEEccCCCCCC--chhhcCC--CCCcEE
Q 005639 124 IPNHVFAGMSNLRGLALSNMQF----LSLPSLFH------------LPLNLQTLCLDRCALGD--IAIIGNL--KKLEIL 183 (686)
Q Consensus 124 ~~~~~f~~l~~Lr~L~L~~~~~----~~lp~~i~------------~l~~L~~L~l~~~~l~~--~~~i~~L--~~L~~L 183 (686)
.+..++..+++|+.|+++++.. ..+|..++ .+++|++|++++|.+.. +..++.+ .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3455667788888888877532 12333332 78999999999998876 6667664 459999
Q ss_pred EccCCC-Cc--cccHHHhcCCCCCEEeccCCCCCcccCc----ccccCCCCCcEEEcCCCccccccccccccccccchhh
Q 005639 184 SLVDSN-IE--QLPEEMAQLTQLRLFDLSGCSKLKVIPP----NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 256 (686)
Q Consensus 184 ~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (686)
++++|. +. .++..+.++++|++|++++|. +..... .....+++|++|+++++.+... ........
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~-------~~~~l~~~ 215 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-------SPKDLETI 215 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSC-------CHHHHHHH
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCcc-------CHHHHHHH
Confidence 999985 32 344446689999999999986 433321 1256789999999998876410 01122344
Q ss_pred hccCCCCcEEEEEecCCcccCcccc-ccCccEEEEEEcC-ccCCCCccccceEEEEecCCCchHHHHHHhhccceeeccc
Q 005639 257 LKLLSHLTTLEIQICDAMILPKGLF-SKKLERYKIFIGD-EWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDE 334 (686)
Q Consensus 257 l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~ 334 (686)
+..+++|+.|+++++....++..+. .++|+.+.+.... .......... ...+++|+.|.+.+
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN----------------LVFPRKLCRLGLSY 279 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC----------------CCCCTTCCEEEETT
T ss_pred HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH----------------hhccccccccCccc
Confidence 6778999999999988776664432 3788888875311 1010000000 01124455555544
Q ss_pred ccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEE
Q 005639 335 VPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKV 414 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 414 (686)
... ..... .+..+++|++|++++|. +.. .........+++|++|++.++..-..+. .-...+++|++|++
T Consensus 280 ~~~-~~l~~--~~~~~~~L~~L~Ls~~~-l~~---~~~~~~~~~~~~L~~L~L~~~~~~~~l~---~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 280 MGP-NEMPI--LFPFAAQIRKLDLLYAL-LET---EDHCTLIQKCPNLEVLETRNVIGDRGLE---VLAQYCKQLKRLRI 349 (592)
T ss_dssp CCT-TTGGG--GGGGGGGCCEEEETTCC-CCH---HHHHHHHTTCTTCCEEEEEGGGHHHHHH---HHHHHCTTCCEEEE
T ss_pred cch-hHHHH--HHhhcCCCcEEecCCCc-CCH---HHHHHHHHhCcCCCEEeccCccCHHHHH---HHHHhCCCCCEEEe
Confidence 311 11111 13456777777777665 221 1110113456677777666321111110 00134677778887
Q ss_pred ec----------CCCCccccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCc---ccc
Q 005639 415 RN----------CDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF---LPQ 481 (686)
Q Consensus 415 ~~----------C~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---c~~ 481 (686)
.+ |..++..........+++|++|++ .|..+..... ......+++|++|++.+ |..
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~----------~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL----------ESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH----------HHHHHHCCSCCEEEEEECSCCSC
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH----------HHHHhhCCCCcEEEEeecCCCcc
Confidence 75 776665432223455777888777 4454443221 00011366777777764 444
Q ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccCCcccEEeeccc-c-cceecccCccccccCCc
Q 005639 482 LTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI-S-TEKIWCNQLAAVYSQNL 559 (686)
Q Consensus 482 L~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~-~-l~~~~~~~~~~~~l~~L 559 (686)
++..+.... +......+++|++|++++| + ++........ ..+++|
T Consensus 419 l~~~p~~~~--------------------------------~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-~~~~~L 465 (592)
T 3ogk_B 419 ITDLPLDNG--------------------------------VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-QYSPNV 465 (592)
T ss_dssp CSSCCCHHH--------------------------------HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-HSCTTC
T ss_pred ccCchHHHH--------------------------------HHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-HhCccc
Confidence 443221000 0000124677777777655 2 3221111111 146677
Q ss_pred cEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccccccccceeecccCCCcCeeecCCCcCC
Q 005639 560 TRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSK 639 (686)
Q Consensus 560 ~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~ 639 (686)
++|++++| ++.......++..+++|++|+|++|+ ++.. +.. .....+++|++|++++|+ ++..........
T Consensus 466 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-----~~~-~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~ 536 (592)
T 3ogk_B 466 RWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSER-----AIA-AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMA 536 (592)
T ss_dssp CEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHH-----HHH-HHHHHCSSCCEEEEESCB-CCTTCTTGGGGC
T ss_pred eEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHH-----HHH-HHHHhcCccCeeECcCCc-CCHHHHHHHHHh
Confidence 77777765 35442222344566777777777775 4321 000 112356777777777776 443322212223
Q ss_pred CCCccEEEEec
Q 005639 640 WPMLKKLEVYG 650 (686)
Q Consensus 640 ~~~L~~L~I~~ 650 (686)
+|.++...|..
T Consensus 537 ~p~l~~~~~~~ 547 (592)
T 3ogk_B 537 RPYWNIELIPS 547 (592)
T ss_dssp CTTEEEEEECC
T ss_pred CCCcEEEEecC
Confidence 45555554443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.2e-21 Score=195.67 Aligned_cols=154 Identities=19% Similarity=0.274 Sum_probs=99.9
Q ss_pred CCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEc
Q 005639 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSL 185 (686)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l 185 (686)
+++.++++++.+. .+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.++. |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666777666554 555443 256777777777776653 466777777777777777766 566777777777777
Q ss_pred cCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcE
Q 005639 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (686)
Q Consensus 186 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (686)
++|.++.+|..+. ++|++|++++|. +..+|...++++++|++|++++|.+.. .......++.+ +|+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CCSC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-ccCE
Confidence 7777777776544 677777777766 666666556777777777777776531 01122344445 6777
Q ss_pred EEEEecCCcccCcc
Q 005639 266 LEIQICDAMILPKG 279 (686)
Q Consensus 266 L~l~~~~~~~~~~~ 279 (686)
|++++|.+..+|..
T Consensus 177 L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 177 LRISEAKLTGIPKD 190 (332)
T ss_dssp CBCCSSBCSSCCSS
T ss_pred EECcCCCCCccCcc
Confidence 77777766665544
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.2e-21 Score=195.69 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=133.7
Q ss_pred CCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccC
Q 005639 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 165 (686)
.++.++++++.+..+|... .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788899888888887654 468999999998876 56556678999999999999998875 67889999999999999
Q ss_pred CCCCC-chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcc--cCcccccCCCCCcEEEcCCCccccc
Q 005639 166 CALGD-IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 166 ~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
|.++. |..+. ++|++|++++|.+..+|.. ++++++|++|++++|. ++. ++...++.+ +|++|++++|.+...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 99888 65555 7999999999999988765 7889999999999987 542 333346777 899999988876521
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
. ..+ .++|+.|++++|.+..++.
T Consensus 188 ~------------~~~--~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 188 P------------KDL--PETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp C------------SSS--CSSCSCCBCCSSCCCCCCT
T ss_pred C------------ccc--cCCCCEEECCCCcCCccCH
Confidence 1 111 1578888888887665543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.2e-20 Score=191.42 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=43.3
Q ss_pred CCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccC
Q 005639 134 NLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSG 210 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 210 (686)
.+++|++++|.++.++. .++++++|++|++++|.++. |..++++++|++|++++|.++.+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 34444444444444332 34444444444444444443 3344444444444444444444443322 3444444444
Q ss_pred CCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 211 CSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 211 ~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
|. +..++...++++++|++|++++|.
T Consensus 131 n~-l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 131 NE-ITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SC-CCBBCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-ccccCHhHhcCCccccEEECCCCc
Confidence 43 344443334444444444444443
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=2.4e-22 Score=223.90 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=94.2
Q ss_pred hcCCCCEEEecCCCC-ccC---CC------------C-CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCC-CC
Q 005639 84 MLKNCPTIFLHDCKH-WEV---PE------------G-LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNM-QF 145 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~-~~l---~~------------~-~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~-~~ 145 (686)
..++++++++.++.. ..+ +. . ..+++|++|+++++.+....+..+...+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 346678888877642 111 10 0 146678888888776554444444335778888888777 44
Q ss_pred cc--CCcccCCCCCCcEEEccCCCCCC--chhhc----CCCCCcEEEccCCC--Cc--cccHHHhcCCCCCEEeccCCCC
Q 005639 146 LS--LPSLFHLPLNLQTLCLDRCALGD--IAIIG----NLKKLEILSLVDSN--IE--QLPEEMAQLTQLRLFDLSGCSK 213 (686)
Q Consensus 146 ~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~i~----~L~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~ 213 (686)
.. ++..+..+++|++|++++|.++. +..+. .+++|++|++++|. +. .++.-+.++++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 44444567788888888777554 33332 55678888887775 22 2333345667888888877755
Q ss_pred CcccCcccccCCCCCcEEEcCCC
Q 005639 214 LKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 214 l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
+..++.. +.++++|++|++..+
T Consensus 224 ~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 224 LEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHH-HHHCTTCSEEECSBC
T ss_pred HHHHHHH-HhcCCcceEcccccc
Confidence 6665554 677777888776654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8.2e-21 Score=193.79 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=146.7
Q ss_pred cCCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
...++.|+++++.+..+|... .+++|++|++++|.+. .+|.. |.++++|++|++++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 478899999999998888755 8999999999999887 77755 58899999999999999999999999999999999
Q ss_pred cCCCCCC--chhhcC---------CCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEE
Q 005639 164 DRCALGD--IAIIGN---------LKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (686)
Q Consensus 164 ~~~~l~~--~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 232 (686)
++|++.. |..++. +++|++|++++|+++.+|..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 9987554 666554 999999999999999999999999999999999987 7788886 89999999999
Q ss_pred cCCCccccccccccccccccchhhhccCCCCcEEEEEecC
Q 005639 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (686)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (686)
+++|.+... .+..++.+++|+.|++++|.
T Consensus 236 Ls~n~~~~~-----------~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 236 LRGCTALRN-----------YPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CTTCTTCCB-----------CCCCTTCCCCCCEEECTTCT
T ss_pred CcCCcchhh-----------hHHHhcCCCCCCEEECCCCC
Confidence 999876622 33567778888888887765
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=5.6e-20 Score=188.42 Aligned_cols=148 Identities=21% Similarity=0.335 Sum_probs=86.9
Q ss_pred CCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccC
Q 005639 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 165 (686)
.++.++++++.+..+|... .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4556666666665555433 245666666666655 44444456666666666666666654 55666666666666666
Q ss_pred CCCCC-chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcc--cCcccccCCCCCcEEEcCCCccc
Q 005639 166 CALGD-IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 166 ~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
|.++. |..+. ++|++|++++|.+..++.. ++++++|++|++++|. +.. +....++++++|++|++++|.+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 66665 44333 5666666666666655543 5666666666666655 321 22223566666666666666544
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.5e-20 Score=190.70 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=162.7
Q ss_pred CCCCEEEecCCCCc---cCCCCC-CCCCCcEEEecC-CccCCccChhhhhCCCCCcEEEecCCCCc-cCCcccCCCCCCc
Q 005639 86 KNCPTIFLHDCKHW---EVPEGL-EYPQLEFFCMSP-RDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQ 159 (686)
Q Consensus 86 ~~lr~l~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~ 159 (686)
.++++|+++++.+. .+|... .+++|++|++++ |.+.+.+|.. |.++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56777888877775 355443 777788888874 6666556554 577788888888887776 5777777788888
Q ss_pred EEEccCCCCCC--chhhcCCCCCcEEEccCCCCc-cccHHHhcCC-CCCEEeccCCCCCcccCcccccCCCCCcEEEcCC
Q 005639 160 TLCLDRCALGD--IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLT-QLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (686)
Q Consensus 160 ~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (686)
+|++++|.+.. |..++++++|++|++++|.++ .+|..+++++ +|++|++++|.....+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 88888887763 677777888888888888777 6777777777 7888888777633355554 67776 88888877
Q ss_pred CccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCC
Q 005639 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTS 315 (686)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~ 315 (686)
|.+.. ..+..++.+++|+.|++++|.+...++.+
T Consensus 207 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------------------- 240 (313)
T 1ogq_A 207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKV----------------------------------- 240 (313)
T ss_dssp SEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGC-----------------------------------
T ss_pred CcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcc-----------------------------------
Confidence 76652 23355677777777777776644322211
Q ss_pred chHHHHHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcch
Q 005639 316 NVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHL 393 (686)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 393 (686)
..+++|+.|++.++......+. .+..+++|++|+++++.....+|. ...+++|+.+.+.+.+.+
T Consensus 241 ------~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 241 ------GLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQ------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ------CCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEEEECCC------STTGGGSCGGGTCSSSEE
T ss_pred ------cccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCcccccCCC------CccccccChHHhcCCCCc
Confidence 0125566666666554333332 246688888888888763323322 245777888877776643
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=190.92 Aligned_cols=175 Identities=19% Similarity=0.247 Sum_probs=128.4
Q ss_pred EEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCCC
Q 005639 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCAL 168 (686)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~l 168 (686)
..+.+++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|.+
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 4667777777777644 247888888888766 56665678888888888888888775 45678888888888888888
Q ss_pred CC-ch-hhcCCCCCcEEEccCCCCccccH--HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccc
Q 005639 169 GD-IA-IIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (686)
Q Consensus 169 ~~-~~-~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (686)
+. +. .++++++|++|++++|.++.+|. .++++++|++|++++|..+..++...++++++|++|++++|.+..
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---- 188 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---- 188 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc----
Confidence 77 43 37888888888888888888776 577888888888888755777766557788888888888776652
Q ss_pred ccccccccchhhhccCCCCcEEEEEecCCcccC
Q 005639 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (686)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (686)
..+..++.+++|++|++++|.+..++
T Consensus 189 -------~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 189 -------YEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp -------ECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred -------cCHHHHhccccCCeecCCCCccccch
Confidence 22355667777777777776654433
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.5e-20 Score=189.04 Aligned_cols=247 Identities=15% Similarity=0.150 Sum_probs=181.0
Q ss_pred CCCcEEEecCCccCC--ccChhhhhCCCCCcEEEecC-CCCc-cCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCc
Q 005639 108 PQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSN-MQFL-SLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLE 181 (686)
Q Consensus 108 ~~Lr~L~l~~~~~~~--~~~~~~f~~l~~Lr~L~L~~-~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~ 181 (686)
.+++.|+++++.+.+ .+|.. |.++++|++|++++ +.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999886 67654 68899999999995 7776 589899999999999999999984 88899999999
Q ss_pred EEEccCCCCc-cccHHHhcCCCCCEEeccCCCCCc-ccCcccccCCC-CCcEEEcCCCccccccccccccccccchhhhc
Q 005639 182 ILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLS-RLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 258 (686)
Q Consensus 182 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~-~~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (686)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. ++.++ +|++|++++|.+... .+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLTGK-----------IPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEEEE-----------CCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeeecc-----------CChHHh
Confidence 9999999888 788889999999999999988 55 77876 88887 999999999877622 234555
Q ss_pred cCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccCc
Q 005639 259 LLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 338 (686)
Q Consensus 259 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 338 (686)
.++ |+.|++++|.+...++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~------------------------------------------------------------ 214 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDAS------------------------------------------------------------ 214 (313)
T ss_dssp GCC-CSEEECCSSEEEECCG------------------------------------------------------------
T ss_pred CCc-ccEEECcCCcccCcCC------------------------------------------------------------
Confidence 565 7777776554322111
Q ss_pred cccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCC
Q 005639 339 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 418 (686)
Q Consensus 339 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~ 418 (686)
. .+..+++|++|+++++.. ... .+ ....+++|++|+++++.
T Consensus 215 ----~--~~~~l~~L~~L~L~~N~l-~~~-----------~~---------------------~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 215 ----V--LFGSDKNTQKIHLAKNSL-AFD-----------LG---------------------KVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp ----G--GCCTTSCCSEEECCSSEE-CCB-----------GG---------------------GCCCCTTCCEEECCSSC
T ss_pred ----H--HHhcCCCCCEEECCCCce-eee-----------cC---------------------cccccCCCCEEECcCCc
Confidence 0 134567777777776641 100 00 01235677778877754
Q ss_pred CCc-cccchhhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccccccc
Q 005639 419 KLK-NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (686)
Q Consensus 419 ~l~-~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 484 (686)
++ .+|. .+..+++|++|+++++.--..+|. ...+++|+.+++.+.+.+..
T Consensus 256 -l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 256 -IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -CEECCCG--GGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTCSSSEEES
T ss_pred -ccCcCCh--HHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhcCCCCccC
Confidence 44 4443 567788888888888654334444 24578888888888776654
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=2.7e-21 Score=215.39 Aligned_cols=129 Identities=18% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCCCcEEEecCCccCCccC--------------hhhhhCCCCCcEEEecCCCCcc-CCcccC-CCCCCcEEEccCC-CC
Q 005639 106 EYPQLEFFCMSPRDHSIKIP--------------NHVFAGMSNLRGLALSNMQFLS-LPSLFH-LPLNLQTLCLDRC-AL 168 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~--------------~~~f~~l~~Lr~L~L~~~~~~~-lp~~i~-~l~~L~~L~l~~~-~l 168 (686)
.+++|++|.+.++....++. ..++..+++|+.|+++++.+.. .+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 45567777776654221110 1223445566666666665433 222232 4556666666665 33
Q ss_pred CC--c-hhhcCCCCCcEEEccCCCCcc-----ccHHHhcCCCCCEEeccCCCCCcccCcc----cccCCCCCcEEEcCCC
Q 005639 169 GD--I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIPPN----LLSGLSRLEDLYMGNT 236 (686)
Q Consensus 169 ~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p~~----~i~~L~~L~~L~l~~~ 236 (686)
.. + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..++.. .+.++++|++|++++|
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33 2 222355666666666654332 22212244566666665553 112211 1233456666666555
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=7.3e-22 Score=212.71 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=113.8
Q ss_pred CCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc-----cCCcccCCCCCCcEEEccCCCCCC--chhhc-CCC-
Q 005639 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD--IAIIG-NLK- 178 (686)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~-~L~- 178 (686)
+++++|+++++.+.......+|..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 467888888887664444555788899999999999886 357778888999999999998876 44433 355
Q ss_pred ---CCcEEEccCCCCc-----cccHHHhcCCCCCEEeccCCCCCcccCc-----ccccCCCCCcEEEcCCCccccccccc
Q 005639 179 ---KLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVIPP-----NLLSGLSRLEDLYMGNTSVKWEFEGL 245 (686)
Q Consensus 179 ---~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~~p~-----~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (686)
+|++|++++|++. .+|..+.++++|++|++++|. +..... ......++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---
Confidence 6999999999887 467778899999999999887 543222 11233567999999888765211
Q ss_pred cccccccchhhhccCCCCcEEEEEecCC
Q 005639 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
.......++.+++|++|++++|.+
T Consensus 159 ----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 ----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 112245567778888888887654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.6e-19 Score=179.33 Aligned_cols=195 Identities=26% Similarity=0.383 Sum_probs=147.1
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCC-Ccc
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLS 147 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~-~~~ 147 (686)
..+.....+|. ..++++++|+++++.+..++. ...+++|++|++++|.+. .+....|.++++|++|++++|. +..
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccc
Confidence 34444444443 356788888888888877764 337888888888888766 4544557888888888888886 777
Q ss_pred C-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCccccc
Q 005639 148 L-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (686)
Q Consensus 148 l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~ 223 (686)
+ |..+..+++|++|++++|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++|. ++.+|...++
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 174 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFR 174 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhc
Confidence 6 5677888888888888888877 56688888888888888888877765 7788888888888876 7778776678
Q ss_pred CCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
.+++|++|++++|.+.. ..+..++.+++|+.|++++|.+..++..
T Consensus 175 ~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred CccccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 88888888888887652 2235677788888888888877666543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.5e-19 Score=193.67 Aligned_cols=177 Identities=23% Similarity=0.260 Sum_probs=139.5
Q ss_pred CCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccC
Q 005639 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDR 165 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~ 165 (686)
..+.++..+..+..+|... .+++++|++++|.+. .++...|.++++|++|+|++|.+..++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3467777777777777644 368889999988876 555556788999999999999888754 6788889999999999
Q ss_pred CCCCC--chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 166 CALGD--IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 166 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
|.++. +..+.++++|++|++++|.++.+|. .+.++++|++|++++|..+..++.+.++++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 98887 3558888999999999998888876 47888999999998877788888877888899999999888765
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
.+..+..+++|+.|++++|.+..+++
T Consensus 210 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp ----------SCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred ----------ccccccccccccEEECcCCcCcccCc
Confidence 12346777888888888777665543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=192.59 Aligned_cols=176 Identities=23% Similarity=0.290 Sum_probs=126.2
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~ 166 (686)
.+.++..+..+..+|.... ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566777777777775443 57788888887766 455555777888888888888777654 56777888888888888
Q ss_pred CCCC-c-hhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 167 ALGD-I-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 167 ~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
.++. + ..+.++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 7777 3 457778888888888887777765 37778888888888776677777766777888888888777654
Q ss_pred cccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
.+..+..+++|+.|++++|.+..++.
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEECT
T ss_pred ---------cccccCCCcccCEEECCCCccCccCh
Confidence 12246667777777777776655543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=9.3e-19 Score=192.28 Aligned_cols=257 Identities=19% Similarity=0.158 Sum_probs=190.4
Q ss_pred CCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccC
Q 005639 86 KNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 165 (686)
..++.++++++.+..+|.... ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 468999999999998887554 89999999999877 6665 47899999999999999987 789999999999
Q ss_pred CCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccc
Q 005639 166 CALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (686)
Q Consensus 166 ~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (686)
|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|.. +.+|+.|++++|.+..
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~~----- 175 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS----- 175 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC-----
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCCC-----
Confidence 99988332 678999999999999999863 5899999999986 7777752 4688999999987751
Q ss_pred cccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhh
Q 005639 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLK 325 (686)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 325 (686)
+. ..+++|+.|++++|.+..+|.. . +
T Consensus 176 --------l~--~~~~~L~~L~Ls~N~l~~l~~~--~------------------------------------------~ 201 (622)
T 3g06_A 176 --------LP--MLPSGLQELSVSDNQLASLPTL--P------------------------------------------S 201 (622)
T ss_dssp --------CC--CCCTTCCEEECCSSCCSCCCCC--C------------------------------------------T
T ss_pred --------Cc--ccCCCCcEEECCCCCCCCCCCc--c------------------------------------------c
Confidence 11 4467899999998887766653 1 3
Q ss_pred ccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccc
Q 005639 326 GIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAES 405 (686)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 405 (686)
+|+.|.+.++.. ..+. ..+++|+.|+++++. ++.++ ..+++|+.|+++++ +++.++ . .
T Consensus 202 ~L~~L~L~~N~l-~~l~-----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~lp-----~-~ 259 (622)
T 3g06_A 202 ELYKLWAYNNRL-TSLP-----ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLP-----M-L 259 (622)
T ss_dssp TCCEEECCSSCC-SSCC-----CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCCC-----C-C
T ss_pred hhhEEECcCCcc-cccC-----CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcCC-----c-c
Confidence 344444444322 1111 124778888887764 43332 34577777777775 344331 1 5
Q ss_pred cCCccEEEEecCCCCccccchhhhcCCCCCcEEEEeeccC
Q 005639 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKN 445 (686)
Q Consensus 406 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 445 (686)
+++|+.|++++| +++.+|. .+.++++|+.|++++++-
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCC
Confidence 678888888885 5777765 567888888888888663
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=8.8e-19 Score=186.97 Aligned_cols=234 Identities=21% Similarity=0.281 Sum_probs=185.4
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
..+..+..+|. .....++.|++++|++..++. ...+++|++|++++|.+. .++...|.++++|++|+|++|.++.+
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCee
Confidence 34444555553 456889999999999987764 338999999999999887 67777789999999999999999998
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCC-CCccccHH-HhcCCCCCEEeccCCCCCcccCccccc
Q 005639 149 PS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDS-NIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (686)
Q Consensus 149 p~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~ 223 (686)
|. .+..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|.. +.++++|++|++++|. ++.+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 76 68999999999999999988 457999999999999995 67777764 8999999999999987 889996 89
Q ss_pred CCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccc
Q 005639 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (686)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 303 (686)
.+++|++|++++|.+.. .....+..+++|+.|++++|.+..++...+.
T Consensus 205 ~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------- 252 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------------------- 252 (440)
T ss_dssp TCSSCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSST---------------------
T ss_pred CCcccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhc---------------------
Confidence 99999999999998762 2346788899999999999887766544211
Q ss_pred cceEEEEecCCCchHHHHHHhhccceeecccccCccccccccccccccccceEeecccc
Q 005639 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (686)
Q Consensus 304 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 362 (686)
.+++|+.|++.++.... ... -.+..+++|+.|++.+++
T Consensus 253 -------------------~l~~L~~L~L~~N~l~~-~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 -------------------NLQSLVEINLAHNNLTL-LPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -------------------TCTTCCEEECTTSCCCC-CCT-TTTSSCTTCCEEECCSSC
T ss_pred -------------------CCCCCCEEECCCCCCCc-cCh-hHhccccCCCEEEcCCCC
Confidence 12455556665553322 221 124567888888888876
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.8e-19 Score=182.54 Aligned_cols=146 Identities=24% Similarity=0.244 Sum_probs=69.9
Q ss_pred EEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC---CcccCCCCCCcEEEccCC
Q 005639 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~ 166 (686)
+++..++.+..+|... .+++++|++++|.+. .++..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3444444444444322 134555555555444 44444445555555555555554432 333444555555555555
Q ss_pred CCCC-chhhcCCCCCcEEEccCCCCccccH--HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcc
Q 005639 167 ALGD-IAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 167 ~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (686)
.+.. +..+.++++|++|++++|+++.+|. .+.++++|++|++++|. +...+...++.+++|++|++++|.+
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcc
Confidence 5444 4445555555555555555554442 34455555555555544 3333333345555555555555443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.1e-18 Score=187.04 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=162.4
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
..+.....+|. ..+.++++|++++|++..++. ...+++|++|++++|.+. .++...|.++++|++|+|++|.+..+
T Consensus 61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCcc
Confidence 33444445443 456899999999999987754 338999999999999887 66666789999999999999999998
Q ss_pred Ccc-cCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCC-CCccccHH-HhcCCCCCEEeccCCCCCcccCccccc
Q 005639 149 PSL-FHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDS-NIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (686)
Q Consensus 149 p~~-i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~ 223 (686)
|.. ++.+++|++|++++|.+.. +..+.++++|++|++++| .+..+|.. +.++++|++|++++|. +..+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cc
Confidence 764 7899999999999999988 457999999999999995 77788765 8899999999999987 888886 89
Q ss_pred CCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
.+++|++|++++|.+.. .....+..+++|+.|++++|.+..++..
T Consensus 216 ~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp TCTTCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHH
Confidence 99999999999998763 3346788999999999999887665543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.3e-18 Score=174.15 Aligned_cols=175 Identities=20% Similarity=0.225 Sum_probs=149.6
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
+.++..++.+..+|... .+++++|++++|.+. .++...|..+++|++|++++|.+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67888888888887643 578999999999887 66767789999999999999999886 7789999999999999997
Q ss_pred -CCC--chhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccc
Q 005639 168 -LGD--IAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 168 -l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
+.. +..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 168 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV-- 168 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc--
Confidence 777 67899999999999999999987 4558999999999999987 8888877689999999999999977622
Q ss_pred cccccccccchhhhccCCCCcEEEEEecCCcccC
Q 005639 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (686)
....+..+++|+.|++++|.+....
T Consensus 169 ---------~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 169 ---------PERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ---------CHHHhcCccccCEEECCCCcccccC
Confidence 2245778899999999988876553
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=8e-19 Score=177.76 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=159.7
Q ss_pred EecCcccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCc--cChhhhhCCCCCcEEEecCCCC
Q 005639 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIK--IPNHVFAGMSNLRGLALSNMQF 145 (686)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~--~~~~~f~~l~~Lr~L~L~~~~~ 145 (686)
...+.....+|. ....++++|+++++.+..++.. ..+++|++|++++|.+... .+.. +..+++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 13 RCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp ECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE
T ss_pred EcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc
Confidence 344444555544 4567999999999999988874 3899999999999987621 2333 56799999999999999
Q ss_pred ccCCcccCCCCCCcEEEccCCCCCC-c--hhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcc--cCc
Q 005639 146 LSLPSLFHLPLNLQTLCLDRCALGD-I--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPP 219 (686)
Q Consensus 146 ~~lp~~i~~l~~L~~L~l~~~~l~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~--~p~ 219 (686)
..+|..+..+++|++|++++|.++. + ..+.++++|++|++++|.+... |..+.++++|++|++++|. +.. +|.
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 169 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPD 169 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECS
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchh
Confidence 9999999999999999999999887 3 5799999999999999998854 4558999999999999987 554 566
Q ss_pred ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 220 NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 220 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
. ++.+++|++|++++|.+.. ..+..++.+++|+.|++++|.+..++..
T Consensus 170 ~-~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 170 I-FTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp C-CTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred H-HhhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChh
Confidence 5 8999999999999998762 2236678899999999999887766543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.6e-18 Score=188.71 Aligned_cols=255 Identities=19% Similarity=0.172 Sum_probs=194.6
Q ss_pred CCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEcc
Q 005639 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLV 186 (686)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~ 186 (686)
.++++|+++++.+. .+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++. |. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35889999998887 7776553 789999999999998887 57899999999999888 44 78999999999
Q ss_pred CCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEE
Q 005639 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (686)
Q Consensus 187 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (686)
+|.++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.+... . ..+.+|+.|
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l-------------~--~~~~~L~~L 166 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-------------P--ALPSELCKL 166 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCC-------------C--CCCTTCCEE
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCc-------------C--CccCCCCEE
Confidence 999999886 78899999999987 8888864 48899999998876511 0 134678888
Q ss_pred EEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHHHHHhhccceeecccccCccccccccc
Q 005639 267 EIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLD 346 (686)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 346 (686)
++++|.+..+|.. +++|+.|++.++.. ..+.
T Consensus 167 ~L~~N~l~~l~~~--------------------------------------------~~~L~~L~Ls~N~l-~~l~---- 197 (622)
T 3g06_A 167 WAYNNQLTSLPML--------------------------------------------PSGLQELSVSDNQL-ASLP---- 197 (622)
T ss_dssp ECCSSCCSCCCCC--------------------------------------------CTTCCEEECCSSCC-SCCC----
T ss_pred ECCCCCCCCCccc--------------------------------------------CCCCcEEECCCCCC-CCCC----
Confidence 8888887766621 24555566655432 2221
Q ss_pred cccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhhhhcCCCCccccCCccEEEEecCCCCccccch
Q 005639 347 IEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSF 426 (686)
Q Consensus 347 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 426 (686)
..+++|+.|++.++. ++.++ ..+++|+.|.++++ +++.+ + ..+++|+.|+++++ +++.+|.
T Consensus 198 -~~~~~L~~L~L~~N~-l~~l~--------~~~~~L~~L~Ls~N-~L~~l-----p-~~l~~L~~L~Ls~N-~L~~lp~- 258 (622)
T 3g06_A 198 -TLPSELYKLWAYNNR-LTSLP--------ALPSGLKELIVSGN-RLTSL-----P-VLPSELKELMVSGN-RLTSLPM- 258 (622)
T ss_dssp -CCCTTCCEEECCSSC-CSSCC--------CCCTTCCEEECCSS-CCSCC-----C-CCCTTCCEEECCSS-CCSCCCC-
T ss_pred -CccchhhEEECcCCc-ccccC--------CCCCCCCEEEccCC-ccCcC-----C-CCCCcCcEEECCCC-CCCcCCc-
Confidence 235899999999876 44332 23589999999886 44443 2 55789999999996 7888865
Q ss_pred hhhcCCCCCcEEEEeeccCccccccccccCCcccCCCcceeecccceEecCccc
Q 005639 427 SFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (686)
Q Consensus 427 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 480 (686)
.+++|+.|++++| .+..+|. ....+++|+.|+|++++
T Consensus 259 ----~~~~L~~L~Ls~N-~L~~lp~------------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 ----LPSGLLSLSVYRN-QLTRLPE------------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ----CCTTCCEEECCSS-CCCSCCG------------GGGGSCTTCEEECCSCC
T ss_pred ----ccccCcEEeCCCC-CCCcCCH------------HHhhccccCEEEecCCC
Confidence 5799999999986 5666665 35678999999999876
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=176.99 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=159.9
Q ss_pred EecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc
Q 005639 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
...+.....+|. ...+++++|++++|.+..++. ...+++|++|++++|.+. .++...|.++++|++|++++|.++.
T Consensus 37 ~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 37 KGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp ECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCc
Confidence 334445555554 456799999999999988876 348999999999999887 5666668999999999999999999
Q ss_pred CCcc-cCCCCCCcEEEccCCCCCC-ch--hhcCCCCCcEEEccCC-CCcccc-HHHhcCCCCCEEeccCCCCCcccCccc
Q 005639 148 LPSL-FHLPLNLQTLCLDRCALGD-IA--IIGNLKKLEILSLVDS-NIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (686)
Q Consensus 148 lp~~-i~~l~~L~~L~l~~~~l~~-~~--~i~~L~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~ 221 (686)
+|.. ++++++|++|++++|.++. +. .++++++|++|++++| .+..++ ..++++++|++|++++|. +..+++..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH
Confidence 8876 8999999999999999988 44 6899999999999999 577775 468999999999999988 66665445
Q ss_pred ccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 222 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
++.+++|++|++++|.+... ....+..+++|+.|++++|.+...+.
T Consensus 194 l~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHILL-----------LEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp TTTCSEEEEEEEECSCSTTH-----------HHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred HhccccCCeecCCCCccccc-----------hhhhhhhcccccEEECCCCccccccc
Confidence 89999999999999876411 11335568999999999998776553
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=8.9e-21 Score=204.19 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=101.1
Q ss_pred CCCCEEEecCCCCccCC--C-CCCCCCCcEEEecCCccCCc---cChhhhhCCCCCcEEEecCCCCcc-CCccc-CCCC-
Q 005639 86 KNCPTIFLHDCKHWEVP--E-GLEYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLS-LPSLF-HLPL- 156 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~--~-~~~~~~Lr~L~l~~~~~~~~---~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~i-~~l~- 156 (686)
+++++|+++++++...+ . ...+++|++|++++|.+... .....|..+++|++|++++|.+.. .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 44566777777663322 1 12566777777777765421 112335667777777777777654 12122 2233
Q ss_pred ---CCcEEEccCCCCCC------chhhcCCCCCcEEEccCCCCccc-cHHHh-----cCCCCCEEeccCCCCCccc----
Q 005639 157 ---NLQTLCLDRCALGD------IAIIGNLKKLEILSLVDSNIEQL-PEEMA-----QLTQLRLFDLSGCSKLKVI---- 217 (686)
Q Consensus 157 ---~L~~L~l~~~~l~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~l~~~---- 217 (686)
+|++|++++|.+.. +..+.++++|++|++++|.+... +..+. ..++|++|++++|. +...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 57777777777663 56667777777777777766532 22222 24567777777775 4432
Q ss_pred -CcccccCCCCCcEEEcCCCccccccccccccccccchhhhc-cCCCCcEEEEEecCCc
Q 005639 218 -PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-LLSHLTTLEIQICDAM 274 (686)
Q Consensus 218 -p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 274 (686)
+. .++.+++|++|++++|.+..... ......+. ..++|+.|++++|.+.
T Consensus 162 l~~-~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 162 LAS-VLRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHH-HHHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHH-HHhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCCc
Confidence 22 25566777777777776541100 00111111 2457777777766543
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-17 Score=165.94 Aligned_cols=191 Identities=23% Similarity=0.349 Sum_probs=144.1
Q ss_pred CCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCccc-CCCCCCcEEEcc
Q 005639 86 KNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLF-HLPLNLQTLCLD 164 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i-~~l~~L~~L~l~ 164 (686)
...+.++++++.+..+|.... +++++|++++|.+. .++...|.++++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356778888888887776443 57888888888776 566656788888888888888888877654 778888888888
Q ss_pred CCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccc
Q 005639 165 RCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 165 ~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
+|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++|. +..+|...++.+++|++|++++|.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE-
Confidence 888877 35568888888888888888877654 6788888888888876 778887767888888888888887652
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcccCcccc--ccCccEEEE
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF--SKKLERYKI 290 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l 290 (686)
.....+..+++|+.|++++|.+..++.... .++|+.+.+
T Consensus 172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 172 ----------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ----------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 122446777888888888888777776533 255555554
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.2e-17 Score=168.90 Aligned_cols=190 Identities=15% Similarity=0.182 Sum_probs=160.1
Q ss_pred hhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 162 (686)
....++++|++.++.+..++....+++|++|++++|.+. .++. |..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 346789999999999988887668999999999999876 4554 788999999999999998886 688999999999
Q ss_pred ccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 163 l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
+++|.++..+.+.++++|++|++++|.++.+|. ++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~--- 186 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS--- 186 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC---
Confidence 999999885569999999999999999998876 8899999999999987 788877 899999999999998775
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEc
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (686)
.+..+..+++|+.|++++|.+..+++....++|+.|.+..+
T Consensus 187 ----------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 ----------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ----------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred ----------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 12337888999999999998887775444577887777543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-17 Score=165.05 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=162.3
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+...+..+..+|. ..+..+++|+++++++..++. ...+++|++|++++|.+. .++..+|.++++|++|++++|.+.
T Consensus 21 l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 21 VDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCC
T ss_pred EEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCC
Confidence 3344444444443 356789999999999988875 348999999999999887 788888899999999999999999
Q ss_pred cCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccc
Q 005639 147 SLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 147 ~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
.+|. .+..+++|++|++++|.++. +..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 177 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh
Confidence 9875 46899999999999999988 56689999999999999999999876 7899999999999987 888988778
Q ss_pred cCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 223 SGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 223 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
.++++|++|++++|.+... ....+..+++|+.|++++|...
T Consensus 178 ~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRV-----------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCCcC-----------CHHHhccccCCCEEEecCCCee
Confidence 9999999999999987621 2245778899999999988743
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=9.6e-18 Score=167.74 Aligned_cols=192 Identities=22% Similarity=0.230 Sum_probs=162.9
Q ss_pred hcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
...+++.+++.++.+..+|.... ++++.|++++|.+. .++...|.++++|++|++++|.++.++.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 35678999999999998887553 78999999999887 55556689999999999999999988764 88999999999
Q ss_pred cCCCCCC-chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccc
Q 005639 164 DRCALGD-IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 164 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
++|.++. |..+..+++|++|++++|+++.+|. .+.++++|++|++++|. +..+|.+.+..+++|++|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999998 8888999999999999999999885 48999999999999987 8889988789999999999999987622
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcccCccccc-cCccEEEE
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFS-KKLERYKI 290 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 290 (686)
....+..+++|+.|++++|.+..+|..++. .+|+.+.+
T Consensus 164 -----------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 -----------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred -----------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 124467889999999999999988887643 45655554
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=8.5e-17 Score=162.50 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=162.8
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
+...+.....++.....+++++|++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+..+
T Consensus 46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCC
T ss_pred EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCc
Confidence 33444444455555668999999999999988887669999999999999876 454 378999999999999999998
Q ss_pred CcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCC
Q 005639 149 PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (686)
Q Consensus 149 p~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L 228 (686)
|. +..+++|++|++++|.++....++++++|++|++++|.++.+|. +.++++|++|++++|. +..++. +..+++|
T Consensus 123 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNL 197 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCC
Confidence 75 99999999999999999995559999999999999999999887 9999999999999987 888887 8999999
Q ss_pred cEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 229 EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
++|++++|.+.. +..+..+++|+.|++++|.+...|..
T Consensus 198 ~~L~L~~N~l~~-------------~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 198 IEVHLKNNQISD-------------VSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CEEECTTSCCCB-------------CGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CEEEccCCccCc-------------cccccCCCCCCEEEccCCeeecCCee
Confidence 999999998761 12488999999999999987766544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=3.1e-17 Score=163.30 Aligned_cols=194 Identities=22% Similarity=0.257 Sum_probs=148.2
Q ss_pred hhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCc
Q 005639 83 DMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQ 159 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~ 159 (686)
..+..+++|++++|.+..++. ...+++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 345678999999998877764 337889999999988776 566666788899999999999888755 5688899999
Q ss_pred EEEccCCCCCC--chhhcCCCCCcEEEccCCCCcc--ccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCc----EE
Q 005639 160 TLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE----DL 231 (686)
Q Consensus 160 ~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L 231 (686)
+|++++|.+.. +..++++++|++|++++|.+.. +|..++++++|++|++++|. ++.++...+..+++|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 99999998887 3468889999999999998876 67888999999999999887 7777765566666666 78
Q ss_pred EcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcccc--ccCccEEEE
Q 005639 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF--SKKLERYKI 290 (686)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l 290 (686)
++++|.+.... .......+|+.|++++|.+..++..++ .++|+.+.+
T Consensus 183 ~ls~n~l~~~~------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 183 DLSLNPMNFIQ------------PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp ECCSSCCCEEC------------TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred ecCCCcccccC------------ccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 88888765221 122223478889999888887776543 356666555
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=6.6e-17 Score=160.93 Aligned_cols=178 Identities=18% Similarity=0.306 Sum_probs=143.1
Q ss_pred EEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCC
Q 005639 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCAL 168 (686)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l 168 (686)
.+...+..+..+|... .+++++|++++|.+. .++...|.++++|++|++++|.+..++. .++.+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4555556666777644 257999999999887 5666668999999999999999988664 789999999999999999
Q ss_pred CC--chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcc--cCcccccCCCCCcEEEcCCCccccccc
Q 005639 169 GD--IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (686)
Q Consensus 169 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (686)
+. +..+.++++|++|++++|++..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 88 5789999999999999999998876 58999999999999987 665 5655 899999999999999876322
Q ss_pred cccccccccchhhhccCCCCc-EEEEEecCCcccCcc
Q 005639 244 GLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKG 279 (686)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 279 (686)
...+..+..++.|. .|++++|.+..++..
T Consensus 166 -------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 166 -------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp -------GGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred -------HHHhhhhhhccccceeeecCCCcccccCcc
Confidence 12345555566555 788888887776654
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=5.1e-17 Score=162.64 Aligned_cols=175 Identities=24% Similarity=0.346 Sum_probs=154.8
Q ss_pred hhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLC 162 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 162 (686)
....++++++++++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 457889999999999988887668999999999999887 4444 7899999999999999988775 99999999999
Q ss_pred ccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccc
Q 005639 163 LDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (686)
Q Consensus 163 l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (686)
+++|.++.++.+..+++|++|++++|.++.+ ..++++++|++|++++|. +..+++ ++.+++|++|++++|.+.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~--- 191 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 191 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC---
Confidence 9999999988899999999999999999988 479999999999999987 888877 899999999999999876
Q ss_pred ccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
.+..+..+++|+.|++++|.+...|.
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ----------CChhhccCCCCCEEECcCCcccCCcc
Confidence 23458899999999999998665543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=6.9e-17 Score=160.24 Aligned_cols=178 Identities=22% Similarity=0.282 Sum_probs=152.3
Q ss_pred hhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcE
Q 005639 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQT 160 (686)
Q Consensus 82 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~ 160 (686)
....++++.+++.++.+..++....+++|++|++++|.+.. ++ .|..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 35678999999999999888877789999999999998763 43 378999999999999999987754 689999999
Q ss_pred EEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 161 LCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 161 L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
|++++|.++. +..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++.+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence 9999999988 45589999999999999999988876 6899999999999987 888888767999999999999998
Q ss_pred cccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 238 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
+... ....++.+++|+.|++++|...
T Consensus 193 l~~~-----------~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 193 LKSV-----------PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSCC-----------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcc-----------CHHHHhCCcCCCEEEccCCCcc
Confidence 7622 2245788899999999988643
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.6e-19 Score=179.09 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=58.1
Q ss_pred hhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCC
Q 005639 126 NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR 204 (686)
Q Consensus 126 ~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 204 (686)
..+|..+++|++|++++|.+..++ ..++.+++|++|++++|.+.....+..+++|++|++++|.++.+| ..++|+
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 344455555666666666655543 345566666666666666555222556666666666666555544 235666
Q ss_pred EEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 205 LFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 205 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+|++++|. +..++. ..+++|++|++++|.+.
T Consensus 103 ~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 103 TLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp EEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC
T ss_pred EEECCCCc-cCCcCc---cccCCCCEEECCCCCCC
Confidence 66666554 444443 23455666666555544
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=5.9e-17 Score=158.71 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=147.2
Q ss_pred CCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEcc
Q 005639 86 KNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLD 164 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~ 164 (686)
...++++++++.+..+|.... ++++.|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345778999999988887554 68999999999887 4555667899999999999999988654 57899999999999
Q ss_pred CCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccc
Q 005639 165 RCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 165 ~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
+|.++. +..+..+++|++|++++|+++.+|.. +.++++|++|++++|. +..+|...++.+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999988 46788999999999999999998876 6889999999999987 8888886689999999999999987622
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcc
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (686)
....+..+++|+.|++++|....
T Consensus 171 -----------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 -----------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -----------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred -----------CHHHHhCCCCCCEEEeeCCceeC
Confidence 22467788899999999887543
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2.5e-18 Score=174.81 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=132.0
Q ss_pred CCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 86 KNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
.++++|++++|.+..++. ...+++|++|++++|.+.+..+ |..+++|++|++++|.++.+|. .++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 456666666666655542 2256666666666665542222 5566666666666666654442 256666666
Q ss_pred cCCCCCC-chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccc-cCCCCCcEEEcCCCcccc
Q 005639 164 DRCALGD-IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLL-SGLSRLEDLYMGNTSVKW 240 (686)
Q Consensus 164 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i-~~L~~L~~L~l~~~~~~~ 240 (686)
++|.+.. +. ..+++|++|++++|+++.++. .++.+++|++|++++|. +..++...+ +.+++|++|++++|.+..
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 6666655 21 124566666666666665543 35566666666666655 444433223 356666666666665541
Q ss_pred ccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHH
Q 005639 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (686)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 320 (686)
. .....+++|+.|++++|.+..++..+
T Consensus 184 ~-------------~~~~~l~~L~~L~Ls~N~l~~l~~~~---------------------------------------- 210 (317)
T 3o53_A 184 V-------------KGQVVFAKLKTLDLSSNKLAFMGPEF---------------------------------------- 210 (317)
T ss_dssp E-------------ECCCCCTTCCEEECCSSCCCEECGGG----------------------------------------
T ss_pred c-------------ccccccccCCEEECCCCcCCcchhhh----------------------------------------
Confidence 1 11223556666666666555444331
Q ss_pred HHHhhccceeecccccCccccccccccccccccceEeeccccCceeEEecccccccccccccchhhccCCcchhh
Q 005639 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEK 395 (686)
Q Consensus 321 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 395 (686)
..+++|+.|++.++... .+.. .+..+++|+.|+++++..... ........+++|+.+.+.++..++.
T Consensus 211 -~~l~~L~~L~L~~N~l~-~l~~--~~~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 -QSAAGVTWISLRNNKLV-LIEK--ALRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -GGGTTCSEEECTTSCCC-EECT--TCCCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred -cccCcccEEECcCCccc-chhh--HhhcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccC
Confidence 12356666666665432 3322 245678899999988764210 1111234577788888876665554
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2e-17 Score=160.78 Aligned_cols=198 Identities=14% Similarity=0.199 Sum_probs=162.7
Q ss_pred cCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCc-cCCccChhhhhCCCCCcEEEecC-CCCccCC-c
Q 005639 76 QIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRD-HSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-S 150 (686)
Q Consensus 76 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~-~~~~~~~~~f~~l~~Lr~L~L~~-~~~~~lp-~ 150 (686)
...+|. .+..+++|++++|++..++.. ..+++|++|++++|. +. .++...|.++++|++|++++ |.++.+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444454 667899999999999888763 389999999999997 54 77777789999999999998 8998876 4
Q ss_pred ccCCCCCCcEEEccCCCCCCchhhcCCCCCc---EEEccCC-CCccccHH-HhcCCCCC-EEeccCCCCCcccCcccccC
Q 005639 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLE---ILSLVDS-NIEQLPEE-MAQLTQLR-LFDLSGCSKLKVIPPNLLSG 224 (686)
Q Consensus 151 ~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~p~~~i~~ 224 (686)
.+..+++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++|. ++.+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 6789999999999999998833488888888 9999999 99998875 88999999 99999987 78999875555
Q ss_pred CCCCcEEEcCCCc-cccccccccccccccchhhhccC-CCCcEEEEEecCCcccCccccccCccEEEE
Q 005639 225 LSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (686)
Q Consensus 225 L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 290 (686)
++|++|++++|. +... ....+..+ ++|+.|++++|.+..+|.. ..++|+.|.+
T Consensus 179 -~~L~~L~L~~n~~l~~i-----------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVI-----------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTCCEE-----------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCcccC-----------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999999984 6521 22456778 8999999999998888876 4567776664
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=9.5e-17 Score=160.48 Aligned_cols=186 Identities=20% Similarity=0.213 Sum_probs=157.4
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
..+..+..++. .....++.|++++|.+..++. ...+++|++|++++|.+. .++. +..+++|++|++++|.+..+
T Consensus 17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEEECCCCcCCcC
Confidence 33444444443 346789999999999977653 348999999999999887 4444 36899999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCC
Q 005639 149 PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (686)
Q Consensus 149 p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L 225 (686)
|..+..+++|++|++++|.++. +..+.++++|++|++++|+++.+|.. +..+++|++|++++|. ++.+|.+.+.++
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 171 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGL 171 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTC
T ss_pred chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCc
Confidence 9999999999999999999998 46799999999999999999999876 6899999999999987 899999878999
Q ss_pred CCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
++|++|++++|.+.. .+..+..+.+|+.+++++|..
T Consensus 172 ~~L~~L~L~~N~l~~------------ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 172 ENLDTLLLQENSLYT------------IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCEEECCSSCCCC------------CCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCEEECCCCcCCc------------cChhhcccccCCeEEeCCCCc
Confidence 999999999998762 234566677899999998874
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.4e-17 Score=159.20 Aligned_cols=141 Identities=16% Similarity=0.264 Sum_probs=118.7
Q ss_pred CCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCC-CccCCc-ccCCCCCCcEEEccC-CCCCC-
Q 005639 95 DCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSLPS-LFHLPLNLQTLCLDR-CALGD- 170 (686)
Q Consensus 95 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~l~~- 170 (686)
..++..+|. -.+++++|++++|.+. .++...|.++++|++|++++|. ++.+|. .++++++|++|++++ |.++.
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334777777 3458999999999877 6777778999999999999996 888775 678999999999998 88887
Q ss_pred -chhhcCCCCCcEEEccCCCCccccHHHhcCCCCC---EEeccCCCCCcccCcccccCCCCCc-EEEcCCCccc
Q 005639 171 -IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR---LFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGNTSVK 239 (686)
Q Consensus 171 -~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~~~~~ 239 (686)
+..+.++++|++|++++|.++.+|. ++.+++|+ +|++++|..++.+|...++++++|+ +|++++|.+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 4578899999999999999999987 88888888 9999998458888887788899999 9999888765
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.4e-17 Score=167.13 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=51.1
Q ss_pred CCCCCcEEEecCCCCc-cCCccc--CCCCCCcEEEccCCCCCC-chhhcCC-----CCCcEEEccCCCCcccc-HHHhcC
Q 005639 131 GMSNLRGLALSNMQFL-SLPSLF--HLPLNLQTLCLDRCALGD-IAIIGNL-----KKLEILSLVDSNIEQLP-EEMAQL 200 (686)
Q Consensus 131 ~l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~l~~~~l~~-~~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~l 200 (686)
++++|++|++++|.+. .+|..+ +.+++|++|++++|.++. |..++.+ ++|++|++++|++..+| ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3455555555555554 244443 455555555555555544 4444443 55555555555555444 335555
Q ss_pred CCCCEEeccCCCCCcc--cCcc-cccCCCCCcEEEcCCCcc
Q 005639 201 TQLRLFDLSGCSKLKV--IPPN-LLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 201 ~~L~~L~l~~~~~l~~--~p~~-~i~~L~~L~~L~l~~~~~ 238 (686)
++|++|++++|..... ++.. .++.+++|++|++++|.+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 5555555555442211 1211 014455555555555543
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=6.5e-16 Score=151.26 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=143.9
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+...+.....++. .....+++|++++|.+..++.. ..+++|++|++++|.+. .++...|.++++|++|++++|.+.
T Consensus 19 l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 19 VDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp EECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCccc
Confidence 3344455555543 3567899999999999877653 38999999999999887 566667899999999999999999
Q ss_pred cCCc-ccCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccc
Q 005639 147 SLPS-LFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 147 ~lp~-~i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
.+|. .++.+++|++|++++|.++. + ..+.++++|++|++++|+++.+|. .++++++|++|++++|. +..++...+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH
Confidence 8774 56899999999999999998 4 457899999999999999999987 48999999999999987 888888778
Q ss_pred cCCCCCcEEEcCCCccc
Q 005639 223 SGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 223 ~~L~~L~~L~l~~~~~~ 239 (686)
..+++|++|++++|.+.
T Consensus 176 ~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSCCBC
T ss_pred hCCCCCCEEEeeCCcee
Confidence 99999999999999876
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=6.2e-16 Score=153.35 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=145.0
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~ 150 (686)
..+.....++.....+++++|++++|.+..++....+++|++|++++|.+. .++...|.++++|++|++++|.+..+|.
T Consensus 48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred eCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 344444455555678999999999999988876669999999999999887 6777778999999999999999998776
Q ss_pred c-cCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCC
Q 005639 151 L-FHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (686)
Q Consensus 151 ~-i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~ 226 (686)
. ++.+++|++|++++|.++. +..++++++|++|++++|+++.+|.. ++++++|++|++++|. +..+++..++.++
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLT 205 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCc
Confidence 4 7899999999999999998 44578999999999999999988876 6899999999999988 8888887789999
Q ss_pred CCcEEEcCCCccc
Q 005639 227 RLEDLYMGNTSVK 239 (686)
Q Consensus 227 ~L~~L~l~~~~~~ 239 (686)
+|++|++++|.+.
T Consensus 206 ~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 206 SLQYIWLHDNPWD 218 (272)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEccCCCcc
Confidence 9999999999765
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.8e-16 Score=172.41 Aligned_cols=176 Identities=23% Similarity=0.334 Sum_probs=156.2
Q ss_pred hhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 82 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
...+..++.|++.++.+..++....+++|+.|++++|.+. .++. |..+++|+.|+|++|.+..+| .++.+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 3567889999999999998887779999999999999887 4444 789999999999999999887 69999999999
Q ss_pred EccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccc
Q 005639 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 241 (686)
Q Consensus 162 ~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (686)
++++|.+..++.+..+++|++|++++|.+..+ ..++.+++|++|++++|. +..+++ ++.+++|+.|++++|.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~-- 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS-- 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC--
Confidence 99999999988899999999999999999988 479999999999999987 778877 899999999999999876
Q ss_pred cccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 -----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 -----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23568899999999999988765544
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=5.7e-16 Score=155.00 Aligned_cols=180 Identities=21% Similarity=0.229 Sum_probs=150.5
Q ss_pred ecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCch
Q 005639 93 LHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIA 172 (686)
Q Consensus 93 l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~ 172 (686)
+....+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.+..++. ++.+++|++|++++|.++.++
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 33344444333346789999999999876 5544 7889999999999999999887 999999999999999999977
Q ss_pred hhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccccccccccc
Q 005639 173 IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNA 252 (686)
Q Consensus 173 ~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 252 (686)
.++++++|++|++++|+++.++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+..
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~------------ 170 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD------------ 170 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC------------
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc------------
Confidence 7999999999999999999985 68999999999999987 777754 8999999999999998761
Q ss_pred chhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEc
Q 005639 253 SLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (686)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (686)
+..+..+++|+.|++++|.+..++.....++|+.|.+..+
T Consensus 171 -~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 -IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred -chhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 1238889999999999999888776445578888887643
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.8e-16 Score=170.60 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=127.7
Q ss_pred CCCCEEEecCCCCccCCC--CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 86 KNCPTIFLHDCKHWEVPE--GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
+++++|++++|.+..+++ ...+++|++|++++|.+.+..+ |..+++|++|++++|.+..+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 367777777777765543 2266777777777776653333 5667777777777777665553 266777777
Q ss_pred cCCCCCC-chhhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCcccCccccc-CCCCCcEEEcCCCcccc
Q 005639 164 DRCALGD-IAIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLS-GLSRLEDLYMGNTSVKW 240 (686)
Q Consensus 164 ~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~-~L~~L~~L~l~~~~~~~ 240 (686)
++|.+.. +. ..+++|++|++++|.++.++ ..++++++|++|++++|. +..+++..+. .+++|++|++++|.+..
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7777766 32 23566777777777777553 346677777777777766 4443322233 56777777777776542
Q ss_pred ccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEcCccCCCCccccceEEEEecCCCchHHH
Q 005639 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEV 320 (686)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 320 (686)
. .....+++|+.|++++|.+..+|+.+
T Consensus 184 ~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------------------- 210 (487)
T 3oja_A 184 V-------------KGQVVFAKLKTLDLSSNKLAFMGPEF---------------------------------------- 210 (487)
T ss_dssp E-------------ECCCCCTTCCEEECCSSCCCEECGGG----------------------------------------
T ss_pred c-------------cccccCCCCCEEECCCCCCCCCCHhH----------------------------------------
Confidence 1 22334666777777766665554432
Q ss_pred HHHhhccceeecccccCccccccccccccccccceEeeccccC
Q 005639 321 IMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPF 363 (686)
Q Consensus 321 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 363 (686)
..+++|+.|+++++... .++. .+..+++|+.|+++++..
T Consensus 211 -~~l~~L~~L~Ls~N~l~-~lp~--~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 211 -QSAAGVTWISLRNNKLV-LIEK--ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp -GGGTTCSEEECTTSCCC-EECT--TCCCCTTCCEEECTTCCB
T ss_pred -cCCCCccEEEecCCcCc-ccch--hhccCCCCCEEEcCCCCC
Confidence 12355666666655432 2222 245678888888887763
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.6e-15 Score=145.92 Aligned_cols=149 Identities=26% Similarity=0.336 Sum_probs=131.7
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~ 166 (686)
.+.++.+++.+..+|.... ++|++|++++|.+. .++...|.++++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888888888887553 88999999999988 45556689999999999999999998854 689999999999999
Q ss_pred CCCC-c-hhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 167 ALGD-I-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 167 ~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
.++. + ..+..+++|++|++++|+++.+|..+.++++|++|++++|. +..++...+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9998 3 45789999999999999999999999999999999999987 88998877899999999999998765
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-15 Score=143.65 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=111.0
Q ss_pred hhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCcccCCCCCCcEE
Q 005639 83 DMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTL 161 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L 161 (686)
....++++++++++.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 346778888888888877775557788888888887543 333 36778888888888887765 56677788888888
Q ss_pred EccCCCCCC--chhhcCCCCCcEEEccCCC-CccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcc
Q 005639 162 CLDRCALGD--IAIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 162 ~l~~~~l~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (686)
++++|.++. +..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 888888776 6777888888888888886 77776 57788888888888776 666663 77788888888777764
Q ss_pred c
Q 005639 239 K 239 (686)
Q Consensus 239 ~ 239 (686)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.5e-16 Score=161.75 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=58.0
Q ss_pred CCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC---chhhcCCCCCcEEEccCCCCc-cccHHHhcCCCCCEEec
Q 005639 133 SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD---IAIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDL 208 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 208 (686)
+++++|+++++.+...+..+..+++|++|++++|.+.. +..+.++++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 55666666666555544445556666666666665543 344556666666666666555 44555556666666666
Q ss_pred cCCCCCcc--cCcccccCCCCCcEEEcCCC
Q 005639 209 SGCSKLKV--IPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 209 ~~~~~l~~--~p~~~i~~L~~L~~L~l~~~ 236 (686)
++|..++. ++.. ++++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 66533442 3332 455666666666655
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=4.5e-16 Score=167.53 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=154.2
Q ss_pred EEecCcccCcCch--hhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCc
Q 005639 69 FMLRNDIQIEWPV--ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+...+..+...+. .....++++|++++|.+...++...+++|++|++++|.+. .++ ..++|++|++++|.+.
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNIS 112 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCC-----CCCCcCEEECcCCcCC
Confidence 3444444444332 3457899999999999976666669999999999999876 333 3489999999999998
Q ss_pred cCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCcc-ccHHHh-cCCCCCEEeccCCCCCcccCcccc
Q 005639 147 SLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQ-LPEEMA-QLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 147 ~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~i~-~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
.++. ..+++|++|++++|.++. |..++++++|++|++++|.+.. .|..+. .+++|++|++++|. +..+|. .
T Consensus 113 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~ 187 (487)
T 3oja_A 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--Q 187 (487)
T ss_dssp CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--C
T ss_pred CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--c
Confidence 8764 357899999999999998 5688999999999999999996 455565 89999999999998 888876 5
Q ss_pred cCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccc
Q 005639 223 SGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (686)
Q Consensus 223 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (686)
..+++|++|++++|.+.. .+..+..+++|+.|++++|.+..+|..+
T Consensus 188 ~~l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp CCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred ccCCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCcCcccchhh
Confidence 679999999999998763 2245788899999999999988777653
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=144.38 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=126.6
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 167 (686)
++++++++.+..+|... .+.++.|++++|.+....+..+|.++++|++|++++|.++.++. .++.+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57899999998888654 34678999999988754456678999999999999999988765 78999999999999999
Q ss_pred CCC--chhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 168 LGD--IAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 168 l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++. +..++++++|++|++++|+++.+ |..+..+++|++|++++|. ++.+++..++.+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 988 45689999999999999999987 5568899999999999987 77786555899999999999998765
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.5e-15 Score=156.40 Aligned_cols=196 Identities=18% Similarity=0.171 Sum_probs=120.3
Q ss_pred ecCcccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcE-EEecCCCCcc
Q 005639 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-LALSNMQFLS 147 (686)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~-L~L~~~~~~~ 147 (686)
..+..+..+|. .++.++++|++++|++..++.. ..+++|++|++++|.+...++..+|.++++++. +.+.++.+..
T Consensus 16 C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 16 CQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp EESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred ecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 34444444443 3456677777777777777653 267777777777777665666666777766554 4555566766
Q ss_pred C-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCC-CCccccHH-HhcC-CCCCEEeccCCCCCcccCccc
Q 005639 148 L-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDS-NIEQLPEE-MAQL-TQLRLFDLSGCSKLKVIPPNL 221 (686)
Q Consensus 148 l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l-~~L~~L~l~~~~~l~~~p~~~ 221 (686)
+ |..+..+++|++|++++|.+.. +..+....++.+|++.++ ++..+|.. +..+ ..+++|++++|. ++.+|.+
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~- 172 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS- 172 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-
Confidence 5 3456777777777777777766 234445566667777553 66666653 3333 356777777766 6777766
Q ss_pred ccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcc
Q 005639 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (686)
Q Consensus 222 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (686)
+....+|++|++.++...... ....++.+++|+.|++++|.+..+|..
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i----------~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEEL----------PNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCC----------CTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hccccchhHHhhccCCcccCC----------CHHHhccCcccchhhcCCCCcCccChh
Confidence 345566777777643322111 113356667777777777776666654
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=2.1e-15 Score=144.06 Aligned_cols=148 Identities=22% Similarity=0.286 Sum_probs=125.5
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
+.++..++.+..+|.... ++++.|++++|.+. .++...|..+++|++|+|++|.+..+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 568888888888886543 68999999999877 66666788999999999999999885 7788999999999999999
Q ss_pred CCC-c-hhhcCCCCCcEEEccCCCCcccc-HHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 168 LGD-I-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 168 l~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++. | ..+.++++|++|++++|.++.++ ..+..+++|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988 4 44688999999999999999875 458899999999999987 88888777888999999999988765
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.3e-15 Score=143.10 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=130.5
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEIL 183 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L 183 (686)
.+++|++|++++|.+. .++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6788999999999887 6663 688999999999999887766 68999999999999999987 8899999999999
Q ss_pred EccCCCCcc-ccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCC
Q 005639 184 SLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (686)
Q Consensus 184 ~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 262 (686)
++++|.++. .|..++++++|++|++++|..++.+|. ++.+++|++|++++|.+. .+..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 999999985 777899999999999999976888884 899999999999999875 1237888999
Q ss_pred CcEEEEEecCCc
Q 005639 263 LTTLEIQICDAM 274 (686)
Q Consensus 263 L~~L~l~~~~~~ 274 (686)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999988754
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.6e-15 Score=143.96 Aligned_cols=148 Identities=24% Similarity=0.381 Sum_probs=122.0
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 167 (686)
+.++..++.+..+|... .+++++|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45677777777776543 458999999998877 66777788899999999999999887764 5789999999999999
Q ss_pred CCC-c-hhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 168 LGD-I-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 168 l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++. + ..++++++|++|++++|+++.+|.. +.++++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 888 3 4578999999999999999988776 6889999999999987 77888876888999999999888654
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=2.2e-15 Score=152.55 Aligned_cols=189 Identities=18% Similarity=0.188 Sum_probs=132.2
Q ss_pred cCCCCEEEecCCCCc-cCCCC---CCCCCCcEEEecCCccCCccChhhhhCC-----CCCcEEEecCCCCccCC-cccCC
Q 005639 85 LKNCPTIFLHDCKHW-EVPEG---LEYPQLEFFCMSPRDHSIKIPNHVFAGM-----SNLRGLALSNMQFLSLP-SLFHL 154 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~f~~l-----~~Lr~L~L~~~~~~~lp-~~i~~ 154 (686)
..++++|++++|++. .+|.. ..+++|++|++++|.+.+. | ..|..+ ++|++|++++|.+..++ ..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 678888888888885 45543 4778888888888887744 4 334555 78888888888887765 67888
Q ss_pred CCCCcEEEccCCCCCC----chhh--cCCCCCcEEEccCCCCcccc---HH-HhcCCCCCEEeccCCCCCcccC-ccccc
Q 005639 155 PLNLQTLCLDRCALGD----IAII--GNLKKLEILSLVDSNIEQLP---EE-MAQLTQLRLFDLSGCSKLKVIP-PNLLS 223 (686)
Q Consensus 155 l~~L~~L~l~~~~l~~----~~~i--~~L~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~l~~~p-~~~i~ 223 (686)
+++|++|++++|++.. +..+ +++++|++|++++|+++.+| .. +.++++|++|++++|. +...+ ...+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 8888888888888654 3444 78888888888888888544 23 3577888888888877 55543 23356
Q ss_pred CCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEE
Q 005639 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (686)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 290 (686)
.+++|++|++++|.+. .. +..+. ++|+.|++++|.+..+|.....++|+.|++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~i-----------p~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QV-----------PKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp CCTTCCEEECTTSCCS-SC-----------CSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred hcCCCCEEECCCCccC-hh-----------hhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 6788888888888765 11 12222 678888888888777765322345554443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.7e-15 Score=156.06 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=88.5
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCc-ccCCCCCCcE-EEccC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPS-LFHLPLNLQT-LCLDR 165 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~-~i~~l~~L~~-L~l~~ 165 (686)
+.++.+++++..+|... .+++++|++++|++. .++...|.++++|++|+|++|.+.+ +|. .+.++++|+. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666667777776544 346777777777665 6666666777777777777776543 443 4566666554 44445
Q ss_pred CCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCC-CCcEEEcCCCcc
Q 005639 166 CALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLS-RLEDLYMGNTSV 238 (686)
Q Consensus 166 ~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~-~L~~L~l~~~~~ 238 (686)
|+++. +..+.++++|++|++++|+++.+|.. +....++.+|++.++..+..++...+..+. .++.|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 56665 45566677777777777766666543 344555666666655556666654344432 345555554443
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=159.63 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=37.2
Q ss_pred CCCcEEEecCCCCcc-CCccc--CCCCCCcEEEccCCCCCC--c----hhhcCCCCCcEEEccCCCCcccc-HHHhcCCC
Q 005639 133 SNLRGLALSNMQFLS-LPSLF--HLPLNLQTLCLDRCALGD--I----AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQ 202 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~-lp~~i--~~l~~L~~L~l~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~ 202 (686)
++|++|++++|.+.. .|..+ +.+++|++|++++|.+.. + ..+..+++|++|++++|.+..+| ..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555554432 33333 445555555555555443 1 22234455555555555554433 23445555
Q ss_pred CCEEeccCCC
Q 005639 203 LRLFDLSGCS 212 (686)
Q Consensus 203 L~~L~l~~~~ 212 (686)
|++|++++|.
T Consensus 171 L~~L~Ls~N~ 180 (310)
T 4glp_A 171 LTSLDLSDNP 180 (310)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 5555555544
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=2.1e-15 Score=148.29 Aligned_cols=169 Identities=20% Similarity=0.201 Sum_probs=119.4
Q ss_pred CCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCC
Q 005639 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 166 (686)
++..+.+..+.+..++....+++|++|++++|.+. .++ .+..+++|++|++++|.+..+|. ++.+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34444555566655554446777777777777665 454 25777888888888888877776 777888888888888
Q ss_pred CCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccccc
Q 005639 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (686)
Q Consensus 167 ~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (686)
.++..+.+.. .+|++|++++|+++.+| .++++++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~------- 163 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT------- 163 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC-------
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc-------
Confidence 8777434444 78888888888877776 47788888888888876 677764 777888888888887765
Q ss_pred ccccccchhhhccCCCCcEEEEEecCCcccC
Q 005639 247 VGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (686)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (686)
.+..+..+++|+.|++++|.....|
T Consensus 164 ------~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ------NTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------BCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------chHHhccCCCCCEEeCCCCcccCCc
Confidence 1155677778888888877765544
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.4e-15 Score=155.99 Aligned_cols=175 Identities=16% Similarity=0.234 Sum_probs=101.4
Q ss_pred CCCCEEEecCCCCccCCC-CCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCcccCCCCCCcEEEc
Q 005639 86 KNCPTIFLHDCKHWEVPE-GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTLCL 163 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~l 163 (686)
..++.+++.++.+...+. ...+++|++|++++|.+........+..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 566666666666543332 23566666666666655433122345666666666666666552 4555666666666666
Q ss_pred cCC-CCCC---chhhcCCCCCcEEEccCC-CCcc--ccHHHhcCC-CCCEEeccCCC-CC--cccCcccccCCCCCcEEE
Q 005639 164 DRC-ALGD---IAIIGNLKKLEILSLVDS-NIEQ--LPEEMAQLT-QLRLFDLSGCS-KL--KVIPPNLLSGLSRLEDLY 232 (686)
Q Consensus 164 ~~~-~l~~---~~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~l--~~~p~~~i~~L~~L~~L~ 232 (686)
++| .++. +..+.++++|++|++++| .++. +|..+.+++ +|++|++++|. .+ ..+|.. ++++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 666 4553 344666666666666666 6663 555566666 66666666663 12 233332 45666666666
Q ss_pred cCCCc-cccccccccccccccchhhhccCCCCcEEEEEecC
Q 005639 233 MGNTS-VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (686)
Q Consensus 233 l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (686)
+++|. +. ...+..+..+++|+.|++++|.
T Consensus 229 l~~~~~l~-----------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLK-----------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCC-----------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCC-----------HHHHHHHhCCCCCCEeeCCCCC
Confidence 66665 22 1233455666666666666554
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=149.03 Aligned_cols=190 Identities=15% Similarity=0.060 Sum_probs=140.1
Q ss_pred cCCCCEEEecCCCCccC-CCC---CCCCCCcEEEecCCccCCccC---hhhhhCCCCCcEEEecCCCCccCC-cccCCCC
Q 005639 85 LKNCPTIFLHDCKHWEV-PEG---LEYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPL 156 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~---~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~ 156 (686)
..++++|++++|.+... +.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45689999999888543 332 568889999999998775433 233457889999999999987755 5778899
Q ss_pred CCcEEEccCCCCCC------chhhcCCCCCcEEEccCCCCccccHH----HhcCCCCCEEeccCCCCCccc-CcccccCC
Q 005639 157 NLQTLCLDRCALGD------IAIIGNLKKLEILSLVDSNIEQLPEE----MAQLTQLRLFDLSGCSKLKVI-PPNLLSGL 225 (686)
Q Consensus 157 ~L~~L~l~~~~l~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~~-p~~~i~~L 225 (686)
+|++|++++|++.. ...++++++|++|++++|+++.+|.. ++++++|++|++++|. +... |.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhc
Confidence 99999999998654 12246889999999999988877653 5788999999999988 5555 654 5665
Q ss_pred ---CCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccccCccEEEE
Q 005639 226 ---SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (686)
Q Consensus 226 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 290 (686)
++|++|++++|.+... +..+ .++|+.|++++|.+..+|.....++|+.|.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~l------------p~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQV------------PKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCCTTCCCEECCSSCCCSC------------CSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred cCcCcCCEEECCCCCCCch------------hhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 6999999998887621 1222 2688999999988877665433466666655
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.2e-14 Score=142.86 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=133.4
Q ss_pred hhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEE
Q 005639 82 ADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (686)
Q Consensus 82 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 161 (686)
.....++++|+++++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.++.+|.... .+|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 4567899999999999998886669999999999999887 4554 7999999999999999999886443 999999
Q ss_pred EccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 162 CLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 162 ~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++++|.++.++.++++++|++|++++|+++.+| .++.+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 999999999778999999999999999999997 79999999999999988 777743 899999999999998765
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=6e-15 Score=161.85 Aligned_cols=181 Identities=21% Similarity=0.225 Sum_probs=151.5
Q ss_pred EecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCCc
Q 005639 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI 171 (686)
Q Consensus 92 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~ 171 (686)
.+..+.+..+.....+++|+.|++.+|.+. .++. |..+++|+.|+|++|.+..+|. +..+++|++|++++|.+..+
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 334444444444447889999999999876 5553 7899999999999999999886 99999999999999999997
Q ss_pred hhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccc
Q 005639 172 AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSN 251 (686)
Q Consensus 172 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (686)
+.+..+++|++|++++|.+..+| .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+..
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----------- 167 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----------- 167 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC-----------
T ss_pred hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC-----------
Confidence 79999999999999999999986 59999999999999987 788854 8999999999999998761
Q ss_pred cchhhhccCCCCcEEEEEecCCcccCccccccCccEEEEEEc
Q 005639 252 ASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (686)
Q Consensus 252 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (686)
+..+..+++|+.|++++|.+..++....+++|+.|.+..+
T Consensus 168 --~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 168 --IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred --chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 1228889999999999999888765445688888887543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1e-14 Score=150.89 Aligned_cols=171 Identities=21% Similarity=0.237 Sum_probs=133.5
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhh-CCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFA-GMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~-~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~ 166 (686)
+.++++++++..+|... .+.++.|++++|.+. .++...|. ++++|++|+|++|.+..++ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888888888654 346889999998877 56666676 8899999999999998866 46888999999999999
Q ss_pred CCCC--chhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCCCCcccCcccc---cCCCCCcEEEcCCCcccc
Q 005639 167 ALGD--IAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLL---SGLSRLEDLYMGNTSVKW 240 (686)
Q Consensus 167 ~l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i---~~L~~L~~L~l~~~~~~~ 240 (686)
.++. +..+.++.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ +.+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9887 45688999999999999998877 4558899999999999987 888888755 568899999999887762
Q ss_pred ccccccccccccchhhhccCCC--CcEEEEEecCC
Q 005639 241 EFEGLNVGRSNASLQELKLLSH--LTTLEIQICDA 273 (686)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 273 (686)
.....+..++. ++.|++.+|..
T Consensus 178 -----------l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 -----------LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -----------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -----------cCHHHhhhccHhhcceEEecCCCc
Confidence 22345666665 36777776653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=150.63 Aligned_cols=168 Identities=23% Similarity=0.270 Sum_probs=142.6
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCCCC---CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCC
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF 145 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~ 145 (686)
+...+..+..+|. .....++.|++++|++..++... .+++|++|++++|.+. .++...|.++++|++|+|++|.+
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcC
Confidence 3444555555554 45678999999999998887643 7899999999999887 67767789999999999999999
Q ss_pred ccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHHH----hcCCCCCEEeccCCCCCcccC
Q 005639 146 LSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEEM----AQLTQLRLFDLSGCSKLKVIP 218 (686)
Q Consensus 146 ~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~~p 218 (686)
..+|. .+..+.+|++|++++|.+.. +..+.++++|++|++++|.++.+|..+ .++++|++|++++|. +..+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 98765 57999999999999999988 678999999999999999999999875 689999999999987 88999
Q ss_pred cccccCCCC--CcEEEcCCCccc
Q 005639 219 PNLLSGLSR--LEDLYMGNTSVK 239 (686)
Q Consensus 219 ~~~i~~L~~--L~~L~l~~~~~~ 239 (686)
...+..++. ++.|++.+|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 776888887 488999998765
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=136.44 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=133.1
Q ss_pred cccCcCchhhhcCCCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc
Q 005639 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL 151 (686)
Q Consensus 74 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~ 151 (686)
.+...++. ....++++|+++++.+..++.. ..+++|++|++++|.+. .++...|..+++|++|++++|.+..+|..
T Consensus 17 ~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 17 QGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 33334332 3467899999999999888764 38999999999999887 77777789999999999999999998765
Q ss_pred -cCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCC
Q 005639 152 -FHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (686)
Q Consensus 152 -i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (686)
++.+++|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence 6899999999999999988 4 4589999999999999999998876 78999999999999851 356778
Q ss_pred CcEEEcCCCcccccc
Q 005639 228 LEDLYMGNTSVKWEF 242 (686)
Q Consensus 228 L~~L~l~~~~~~~~~ 242 (686)
|+.|+++.+.+.+..
T Consensus 167 l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 167 IRYLSEWINKHSGVV 181 (208)
T ss_dssp THHHHHHHHHCTTTB
T ss_pred HHHHHHHHHhCCcee
Confidence 899988887766433
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.1e-14 Score=137.17 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=123.4
Q ss_pred cEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccC
Q 005639 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVD 187 (686)
Q Consensus 111 r~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~ 187 (686)
+.+++.++.+. .+|..+ .+.|+.|++++|.+..+|. .+..+++|++|++++|.++. |..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56778877766 677654 3689999999999988765 78899999999999999988 68899999999999999
Q ss_pred CCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEE
Q 005639 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (686)
Q Consensus 188 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (686)
|+++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+... ....+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI-----------AKGTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-----------CTTTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE-----------CHHHHhCCCCCCEE
Confidence 999999877 6889999999999987 7888776689999999999999987622 22457778899999
Q ss_pred EEEecCC
Q 005639 267 EIQICDA 273 (686)
Q Consensus 267 ~l~~~~~ 273 (686)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9988764
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3e-15 Score=156.65 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=95.9
Q ss_pred cCCCCEEEecCCCCcc-----CCC-CCCCCCCcEEEecCCcc---CCccChhh------hhCCCCCcEEEecCCCCcc--
Q 005639 85 LKNCPTIFLHDCKHWE-----VPE-GLEYPQLEFFCMSPRDH---SIKIPNHV------FAGMSNLRGLALSNMQFLS-- 147 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~~~---~~~~~~~~------f~~l~~Lr~L~L~~~~~~~-- 147 (686)
.+++++|++++|.+.. +.. ...+++|++|++++|.. .+.+|..+ |..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4556666666666532 111 22566666666666432 22233222 3556666666666666654
Q ss_pred ---CCcccCCCCCCcEEEccCCCCCC--chh----hcCC---------CCCcEEEccCCCCc--ccc---HHHhcCCCCC
Q 005639 148 ---LPSLFHLPLNLQTLCLDRCALGD--IAI----IGNL---------KKLEILSLVDSNIE--QLP---EEMAQLTQLR 204 (686)
Q Consensus 148 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~ 204 (686)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|++. .+| ..+.++++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 45556666666666666666643 222 2223 66666666666654 334 3455666666
Q ss_pred EEeccCCCCCc------ccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 205 LFDLSGCSKLK------VIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 205 ~L~l~~~~~l~------~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
+|++++|. +. -+|.. +..+++|++|++++|.+... .....+..+..+++|+.|++++|.+
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred EEECcCCC-CCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCC
Confidence 66666664 43 12212 55666666666666654300 0011234455666666666665543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=134.34 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=124.5
Q ss_pred cEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC--cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEcc
Q 005639 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLV 186 (686)
Q Consensus 111 r~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~ 186 (686)
++++++++.+. .+|..+ ...+++|++++|.++.++ ..++.+++|++|++++|.++. +..++++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58899988876 677654 356789999999999874 347899999999999999998 4579999999999999
Q ss_pred CCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcE
Q 005639 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (686)
Q Consensus 187 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (686)
+|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+... .+..+..+++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV-----------APGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB-----------CTTTTTTCTTCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE-----------CHHHhcCCCCCCE
Confidence 9999988765 8899999999999988 7788666689999999999999987622 2367788999999
Q ss_pred EEEEecCC
Q 005639 266 LEIQICDA 273 (686)
Q Consensus 266 L~l~~~~~ 273 (686)
|++++|..
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99998764
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=4.8e-14 Score=128.61 Aligned_cols=137 Identities=28% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCCcEEEecCCCCc--cCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCcc-ccHHHhcCCCCCEEecc
Q 005639 133 SNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDLS 209 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~ 209 (686)
++|++|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..++++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45555666555555 4555555555666666666555555555556666666666665554 55555556666666666
Q ss_pred CCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCc
Q 005639 210 GCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (686)
Q Consensus 210 ~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (686)
+|. ++.+|. ..++.+++|++|++++|.+.... ......+..+++|+.|+++.|....+|.
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN--------DYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST--------THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH--------HHHHHHHHhCccCcEecCCCCChhhccc
Confidence 654 555442 22556666666666665544110 0011245556666666666666555543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=7.4e-14 Score=134.27 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=124.2
Q ss_pred CcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEcc
Q 005639 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLV 186 (686)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~ 186 (686)
-+.++.+++.+. .+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.+.. + ..+.++++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456788777665 777654 48899999999999886 6678999999999999999988 4 557899999999999
Q ss_pred CCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcE
Q 005639 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (686)
Q Consensus 187 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (686)
+|+++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+... ....+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI-----------PHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC-----------CTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc-----------CHHHHhCCCCCCE
Confidence 9999998876 6899999999999987 8899987 79999999999999987621 2245778899999
Q ss_pred EEEEecCCc
Q 005639 266 LEIQICDAM 274 (686)
Q Consensus 266 L~l~~~~~~ 274 (686)
|++++|...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999888754
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.6e-13 Score=148.80 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=135.7
Q ss_pred CCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccC
Q 005639 86 KNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 165 (686)
.+++.|+++++.+..+|... .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47899999999998888755 478999999999887 677 347899999999999988888 665 999999999
Q ss_pred CCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCcccccccc
Q 005639 166 CALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (686)
Q Consensus 166 ~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (686)
|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|++|++++|.+.. .+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~-lp- 196 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES-LP- 196 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS-CC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc-hh-
Confidence 99988 44 78999999999999999886 68899999999987 788887 55 899999999987761 11
Q ss_pred ccccccccchhhh-ccCCCCcEEEEEecCCcccCcccc-ccCccEEEE
Q 005639 245 LNVGRSNASLQEL-KLLSHLTTLEIQICDAMILPKGLF-SKKLERYKI 290 (686)
Q Consensus 245 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l 290 (686)
. ....+ .....|+.|++++|.+..+|..+. .++|+.|.+
T Consensus 197 ------~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 197 ------A-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ------C-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred ------h-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 0 00011 111233999999999888887654 355555554
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=4.3e-14 Score=126.08 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=33.3
Q ss_pred hCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCcccc--HHHhcCCCCCE
Q 005639 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRL 205 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 205 (686)
..+++|++|++++|.+..+ ..++.+++|++|++++|.++. |..++++++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3344444444444444333 333444444444444444433 222333444444444444444332 33444444444
Q ss_pred EeccCC
Q 005639 206 FDLSGC 211 (686)
Q Consensus 206 L~l~~~ 211 (686)
|++++|
T Consensus 118 L~l~~N 123 (149)
T 2je0_A 118 LDLFNC 123 (149)
T ss_dssp EECTTC
T ss_pred EeCcCC
Confidence 444444
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=7.5e-14 Score=127.29 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=61.8
Q ss_pred CCcEEEecCCccC-CccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEc
Q 005639 109 QLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSL 185 (686)
Q Consensus 109 ~Lr~L~l~~~~~~-~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l 185 (686)
+|++|++++|.+. +.+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..+.++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444433 233322 34455555555555555444 345555555555555555544 333334555555555
Q ss_pred cCCCCcccc--HHHhcCCCCCEEeccCCCCCcccCc---ccccCCCCCcEEEcCCCcc
Q 005639 186 VDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP---NLLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 186 ~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~~~~~ 238 (686)
++|.++.+| ..++++++|++|++++|. +..+|. ..+..+++|++|++++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 555555544 345555555555555554 444443 2245555555555555443
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=3.2e-13 Score=146.44 Aligned_cols=173 Identities=19% Similarity=0.214 Sum_probs=142.2
Q ss_pred EEecCcccCcCchhhhcCCCCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC
Q 005639 69 FMLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (686)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l 148 (686)
+...+..+..++. ....+++.|++++|++..+| ..+++|++|++++|.+.. +|. |.+ +|++|++++|.++.+
T Consensus 64 L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 64 LQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSCC
T ss_pred EEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCCC
Confidence 4445545554443 24578999999999999888 457999999999999884 776 444 999999999999999
Q ss_pred CcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCC
Q 005639 149 PSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (686)
Q Consensus 149 p~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (686)
|. .+++|++|++++|.++. |. .+++|++|++++|.++.+|. +. ++|++|++++|. ++.+|. +.. +
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~ 201 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--R 201 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----
T ss_pred CC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--h
Confidence 97 68999999999999998 54 68999999999999999998 66 999999999987 889988 444 6
Q ss_pred C-------cEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcc
Q 005639 228 L-------EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (686)
Q Consensus 228 L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (686)
| ++|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 202 L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 7 99999999876 234567779999999999998644
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=1.3e-14 Score=150.18 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=109.7
Q ss_pred cCCCCEEEecCCCCccCCC-----C-CCCC-CCcEEEecCCccCCccChhhhhCC-----CCCcEEEecCCCCccCCc-c
Q 005639 85 LKNCPTIFLHDCKHWEVPE-----G-LEYP-QLEFFCMSPRDHSIKIPNHVFAGM-----SNLRGLALSNMQFLSLPS-L 151 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l~~-----~-~~~~-~Lr~L~l~~~~~~~~~~~~~f~~l-----~~Lr~L~L~~~~~~~lp~-~ 151 (686)
..++++|++++|.+...+. . ..++ +|++|++++|.+....+. .|..+ ++|++|++++|.+...+. .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4557778888777765542 1 1555 777788777776533222 23332 777788887777765332 2
Q ss_pred ----cCCC-CCCcEEEccCCCCCC--chh----hcCC-CCCcEEEccCCCCc-----cccHHHhcCC-CCCEEeccCCCC
Q 005639 152 ----FHLP-LNLQTLCLDRCALGD--IAI----IGNL-KKLEILSLVDSNIE-----QLPEEMAQLT-QLRLFDLSGCSK 213 (686)
Q Consensus 152 ----i~~l-~~L~~L~l~~~~l~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~ 213 (686)
+..+ ++|++|++++|.++. +.. +..+ .+|++|++++|.+. .++..+..++ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN- 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-
Confidence 3444 677788887777665 222 3332 57777888777766 4455556665 77777777776
Q ss_pred CcccCccc----ccCC-CCCcEEEcCCCccccccccccccccccchhhhccC-CCCcEEEEEecCCcccC
Q 005639 214 LKVIPPNL----LSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILP 277 (686)
Q Consensus 214 l~~~p~~~----i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~ 277 (686)
++..+... +..+ ++|++|++++|.+... ........+..+ ++|+.|++++|.+...+
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 55544321 3344 4777777777765410 001123344443 47777777777655443
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.3e-14 Score=148.44 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred EecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-----cccCCCC-CCcEEEccCCCCCC--chhhcCC-----CCC
Q 005639 114 CMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-----SLFHLPL-NLQTLCLDRCALGD--IAIIGNL-----KKL 180 (686)
Q Consensus 114 ~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~l~~--~~~i~~L-----~~L 180 (686)
.++++.+++.+| .++...++|++|++++|.+...+ ..+..++ +|++|++++|.+.. +..++.+ ++|
T Consensus 4 ~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344444443333 23344444666666666665544 3455555 66666666666554 4444443 666
Q ss_pred cEEEccCCCCcccc-HH----HhcC-CCCCEEeccCCCCCcccCcccc----cC-CCCCcEEEcCCCccccccccccccc
Q 005639 181 EILSLVDSNIEQLP-EE----MAQL-TQLRLFDLSGCSKLKVIPPNLL----SG-LSRLEDLYMGNTSVKWEFEGLNVGR 249 (686)
Q Consensus 181 ~~L~l~~~~l~~lp-~~----i~~l-~~L~~L~l~~~~~l~~~p~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (686)
++|++++|.++..+ .. +..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+... .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~ 154 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------S 154 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------C
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------H
Confidence 66666666665333 22 2333 566666666665 555544322 22 24666666666654410 0
Q ss_pred cccchhhhccCC-CCcEEEEEecCCc
Q 005639 250 SNASLQELKLLS-HLTTLEIQICDAM 274 (686)
Q Consensus 250 ~~~~~~~l~~l~-~L~~L~l~~~~~~ 274 (686)
.......+..++ +|++|++++|.+.
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhcCCccccEeeecCCCCc
Confidence 011223334443 5666666655543
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.4e-14 Score=156.77 Aligned_cols=154 Identities=22% Similarity=0.270 Sum_probs=104.4
Q ss_pred cCCCCEEEecCCCCccCCCCC-CCCCCcEEEecC-----CccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCC
Q 005639 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSP-----RDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNL 158 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~-----~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L 158 (686)
...++++++.++.+...+... ....|+.+.+.. |.+ .++...|..+..|++|+|++|.+..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 356888999888886654332 333444443332 222 245667899999999999999999999999999999
Q ss_pred cEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCc
Q 005639 159 QTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 159 ~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (686)
++|+|++|.++. |..+++|++|++|+|++|+++.+|..+++|++|++|++++|. ++.+|.. |++|++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 999999999998 889999999999999999999999999999999999999997 8899998 9999999999999998
Q ss_pred ccccc
Q 005639 238 VKWEF 242 (686)
Q Consensus 238 ~~~~~ 242 (686)
+....
T Consensus 328 l~~~~ 332 (727)
T 4b8c_D 328 LEKQF 332 (727)
T ss_dssp CCSHH
T ss_pred cCCCC
Confidence 87443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.5e-13 Score=122.47 Aligned_cols=130 Identities=27% Similarity=0.243 Sum_probs=110.2
Q ss_pred CCCCCcEEEecCCCCc--cCCcccCCCCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCcc-ccHHHhcCCCCCEEe
Q 005639 131 GMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFD 207 (686)
Q Consensus 131 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 207 (686)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++....++++++|++|++++|.+.. +|..++++++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3578999999999998 7999889999999999999999888889999999999999999997 888888999999999
Q ss_pred ccCCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEE
Q 005639 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQ 269 (686)
Q Consensus 208 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (686)
+++|. ++.++. ..++.+++|++|++++|.+.... ......++.+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN--------DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST--------THHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH--------HHHHHHHHHCCCcccccCC
Confidence 99988 777652 33899999999999999876211 1112467888899988754
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=125.40 Aligned_cols=123 Identities=22% Similarity=0.326 Sum_probs=85.7
Q ss_pred EEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCC
Q 005639 112 FFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSN 189 (686)
Q Consensus 112 ~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~ 189 (686)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+..+++|++|++++|.++. +..+.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444444443 444433 246777777777777777777777777777777777776 4557777777777777777
Q ss_pred CccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 190 IEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 190 l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++.+|. .+..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 777665 37777888888888776 77777766777888888888877654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=6.5e-14 Score=128.71 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chh-hcCCCCCcEE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAI-IGNLKKLEIL 183 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~-i~~L~~L~~L 183 (686)
++++|+.|++++|.+. .++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |+. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4455666666665554 3332 222223666666666666655 355666666666666666665 323 3566666666
Q ss_pred EccCCCCccccH--HHhcCCCCCEEeccCCCCCcccCcc---cccCCCCCcEEEcCCCc
Q 005639 184 SLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTS 237 (686)
Q Consensus 184 ~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~ 237 (686)
++++|.+..+|. .++.+++|++|++++|. +..+|.. .++.+++|++|+++++.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666665 45666666666666665 4555542 35556666666655554
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=8.2e-14 Score=145.75 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=139.4
Q ss_pred hcCCCCEEEecCCCCccC----CCC--------CCCCCCcEEEecCCccCCc----cChhhhhCCCCCcEEEecCCCCcc
Q 005639 84 MLKNCPTIFLHDCKHWEV----PEG--------LEYPQLEFFCMSPRDHSIK----IPNHVFAGMSNLRGLALSNMQFLS 147 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l----~~~--------~~~~~Lr~L~l~~~~~~~~----~~~~~f~~l~~Lr~L~L~~~~~~~ 147 (686)
..+++++|+++++.+..+ |.. ..+++|++|++++|.+... ++ ..+..+++|++|+|++|.+..
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH-HHHHHCTTCCEEECCSSCCHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH-HHHHhCCCCCEEECcCCCCCH
Confidence 357899999999766433 211 3679999999999988752 33 346889999999999999863
Q ss_pred -----CCcccCCC---------CCCcEEEccCCCCCC---c---hhhcCCCCCcEEEccCCCCc------cccHHHhcCC
Q 005639 148 -----LPSLFHLP---------LNLQTLCLDRCALGD---I---AIIGNLKKLEILSLVDSNIE------QLPEEMAQLT 201 (686)
Q Consensus 148 -----lp~~i~~l---------~~L~~L~l~~~~l~~---~---~~i~~L~~L~~L~l~~~~l~------~lp~~i~~l~ 201 (686)
++..+..+ ++|++|++++|++.. + ..+..+++|++|++++|++. -.|..+.+++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 34444445 899999999999974 3 46778999999999999988 2333788999
Q ss_pred CCCEEeccCCCCC-----cccCcccccCCCCCcEEEcCCCccccccccccccccccchhhh--ccCCCCcEEEEEecCCc
Q 005639 202 QLRLFDLSGCSKL-----KVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL--KLLSHLTTLEIQICDAM 274 (686)
Q Consensus 202 ~L~~L~l~~~~~l-----~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 274 (686)
+|++|++++|. + ..+|.. +..+++|++|++++|.+.... ....+..+ +.+++|+.|++++|.+.
T Consensus 217 ~L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 217 ELKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDCLLSARG-------AAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TCCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHH-------HHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CccEEECcCCC-CCcHHHHHHHHH-HccCCCcCEEECCCCCCchhh-------HHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 99999999988 5 556765 889999999999999875210 01123455 34899999999988765
Q ss_pred c
Q 005639 275 I 275 (686)
Q Consensus 275 ~ 275 (686)
.
T Consensus 288 ~ 288 (386)
T 2ca6_A 288 L 288 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=5.6e-13 Score=124.23 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCcEEEecCCCCccCCcc--cCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEec
Q 005639 134 NLRGLALSNMQFLSLPSL--FHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDL 208 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 208 (686)
+|++|++++|.+..++.. ++.+++|++|++++|.++. |..++++++|++|++++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555444432 4555555555555555554 34455555555555555555544433 555556666666
Q ss_pred cCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++|. +..+++..++.+++|++|++++|.+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5554 44443333566666666666666543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=9e-13 Score=122.84 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=108.1
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 167 (686)
+.++++++.+..+|.... .++++|++++|.+....+..+|..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 689999999998887553 38999999999887444445689999999999999999886 7789999999999999999
Q ss_pred CCC--chhhcCCCCCcEEEccCCCCccc-cHHHhcCCCCCEEeccCCC
Q 005639 168 LGD--IAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 168 l~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 212 (686)
++. +..++++++|++|++++|+++.+ |..+..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 998 45699999999999999999966 6679999999999999987
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.2e-13 Score=123.24 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=114.5
Q ss_pred hhCCCCCcEEEecCCCCccCCcccCCCC-CCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHH-hcCCCCCEE
Q 005639 129 FAGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLF 206 (686)
Q Consensus 129 f~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 206 (686)
|..+.+|++|++++|.++.+|. +..+. +|++|++++|.++..+.++++++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5778999999999999999875 55554 99999999999998888999999999999999999998765 999999999
Q ss_pred eccCCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCc
Q 005639 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (686)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (686)
++++|. ++.+|. ..++.+++|++|++++|.+.... ......+..+++|+.|+++.+...
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK--------HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST--------THHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH--------hHHHHHHHHCCccceeCCCcCCHH
Confidence 999997 788886 23889999999999999875211 111234788999999999988643
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=4e-12 Score=118.34 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=108.1
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 167 (686)
+.++++++.+..+|... .+++++|++++|.+. .+| ..|.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57889999998888654 368999999999887 777 45799999999999999999876 468999999999999999
Q ss_pred CCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCC
Q 005639 168 LGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (686)
Q Consensus 168 l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 212 (686)
++. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 998 56799999999999999999999886 8899999999999987
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.7e-13 Score=154.38 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=110.5
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILS 184 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~ 184 (686)
.++.|+.|++++|.+. .++..+| ++++|++|+|++|.++.+|..+++|++|++|+|++|.++. |..+++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999887 7888776 7999999999999999999999999999999999999998 89999999999999
Q ss_pred ccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccccCCCC-CcEEEcCCCccc
Q 005639 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR-LEDLYMGNTSVK 239 (686)
Q Consensus 185 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~-L~~L~l~~~~~~ 239 (686)
+++|.++.+|..++++++|++|++++|. +...++..+..+.. +..+++.+|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999998 55444433433321 123455555554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=7.7e-12 Score=114.91 Aligned_cols=106 Identities=26% Similarity=0.454 Sum_probs=61.4
Q ss_pred CCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC-c-hhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEec
Q 005639 133 SNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDL 208 (686)
Q Consensus 133 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 208 (686)
++|++|+++++.+..+|. .++.+++|++|++++|.++. + ..++++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 355555555555555443 23555555666665555555 2 2345666666666666666655544 456666666666
Q ss_pred cCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
++|. ++.+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6664 55666654566666666666666544
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=9.1e-12 Score=114.45 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=107.4
Q ss_pred CCEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEEEccCC
Q 005639 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRC 166 (686)
Q Consensus 88 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~ 166 (686)
.+.+++.++++..+|... .++|++|++++|.+. .++...|.++++|++|++++|.+..+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 367888888888887544 478999999999887 67777789999999999999999998764 689999999999999
Q ss_pred CCCC-c-hhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCC
Q 005639 167 ALGD-I-AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (686)
Q Consensus 167 ~l~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 212 (686)
.++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9998 4 4578999999999999999999887 5789999999999987
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=3.3e-14 Score=133.48 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=98.0
Q ss_pred hhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEE
Q 005639 128 VFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (686)
Q Consensus 128 ~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 206 (686)
.|..+++|++|++++|.+..+| .++.+++|++|++++|.++. |..+..+++|++|++++|+++.+| .++++++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4677888888888888888887 77888888888888888877 666777788888888888888877 68888888888
Q ss_pred eccCCCCCcccCc-ccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEE
Q 005639 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (686)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (686)
++++|. +..++. ..++.+++|++|++++|.+....+.. ..........+..+++|+.|+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 888876 666554 23788888888888888765221100 000111223467778888776
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=6.5e-12 Score=136.96 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=106.6
Q ss_pred CCcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCC
Q 005639 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 134 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 212 (686)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 59999999999999997 9999999999999999999 899999999999999999999999 89999999999999987
Q ss_pred CCccc--CcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEE
Q 005639 213 KLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (686)
Q Consensus 213 ~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (686)
+..+ |.. ++.+++|++|++++|.+...++ ....-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccCC
Confidence 7777 665 8999999999999998863322 12233455788888853
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=8.2e-12 Score=136.13 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=142.4
Q ss_pred CCCCEEEecCCCCccCCCCC-CCCCCcEEEecCCc-------------cCCccChhhhhCCCCCcEEE-ecCCCCccCCc
Q 005639 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRD-------------HSIKIPNHVFAGMSNLRGLA-LSNMQFLSLPS 150 (686)
Q Consensus 86 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~-------------~~~~~~~~~f~~l~~Lr~L~-L~~~~~~~lp~ 150 (686)
+.+++|++++|.+..+|... .+++|+.|++.+|. .. ..++..++.+++|+.|+ ++.+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 44556666666666666544 66667777765542 22 23345567888899888 55554433322
Q ss_pred ------ccCC--CCCCcEEEccCCCCCCchhhcCCCCCcEEEccCCCCccccHHHhcCCCCCEEeccCCCCCcccCcccc
Q 005639 151 ------LFHL--PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (686)
Q Consensus 151 ------~i~~--l~~L~~L~l~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i 222 (686)
.+.. ...|++|++++|.++..+.++++++|++|++++|.++.+|..++++++|++|++++|. ++.+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1111 1259999999999999434999999999999999999999999999999999999987 88898 4 9
Q ss_pred cCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCCcccCcccc-----ccCccEEE
Q 005639 223 SGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLF-----SKKLERYK 289 (686)
Q Consensus 223 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~L~~L~ 289 (686)
+++++|++|++++|.+.... .+..++.+++|+.|++++|.+...|+... .++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99999999999999876211 15789999999999999999888876542 36777664
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=3.7e-11 Score=109.64 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=80.1
Q ss_pred cEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCC
Q 005639 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (686)
Q Consensus 136 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 212 (686)
+.++++++.+..+|..+. .+|++|++++|.++. |..++++++|++|++++|+++.+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 677888888888887664 788888888888777 56678888888888888888888776 4788888888888876
Q ss_pred CCcccCcccccCCCCCcEEEcCCCccc
Q 005639 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 213 ~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+..+|.+.++.+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77788766788888888888887665
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=4.5e-11 Score=108.75 Aligned_cols=102 Identities=24% Similarity=0.316 Sum_probs=84.4
Q ss_pred CcEEEecCCCCccCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCC
Q 005639 135 LRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (686)
Q Consensus 135 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 211 (686)
.++++++++.++.+|..+. .+|++|++++|.++. +..++++++|++|++++|+++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5678888888888887663 788888888888887 56688888888999988888888876 578889999999888
Q ss_pred CCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
. ++.+|.+.++.+++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 78888776888888999988888765
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=2.2e-13 Score=127.85 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=116.2
Q ss_pred CCCEEEecCC--CCccCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcccCCCCCCcEEEc
Q 005639 87 NCPTIFLHDC--KHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (686)
Q Consensus 87 ~lr~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l 163 (686)
.++...+.+. .++.++... .+++|++|++++|.+. .++ .|.++++|++|++++|.+..+|..++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3455555543 334444333 7889999999999887 466 478999999999999999999988888899999999
Q ss_pred cCCCCCCchhhcCCCCCcEEEccCCCCccccH--HHhcCCCCCEEeccCCCCCcccC----------cccccCCCCCcEE
Q 005639 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIP----------PNLLSGLSRLEDL 231 (686)
Q Consensus 164 ~~~~l~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p----------~~~i~~L~~L~~L 231 (686)
++|.++.++.++++++|++|++++|.++.+|. .+.++++|++|++++|. +...+ ...+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999995589999999999999999998875 68999999999999987 43332 2247889999999
Q ss_pred E
Q 005639 232 Y 232 (686)
Q Consensus 232 ~ 232 (686)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.2e-10 Score=106.14 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=48.7
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 167 (686)
+.++++++.+..+|.... ++|++|++++|.+. .+++..|.++++|++|+|++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554332 44555555555444 33333344455555555555555544433 2444555555555544
Q ss_pred CCC-ch-hhcCCCCCcEEEccCCCCcccc
Q 005639 168 LGD-IA-IIGNLKKLEILSLVDSNIEQLP 194 (686)
Q Consensus 168 l~~-~~-~i~~L~~L~~L~l~~~~l~~lp 194 (686)
++. |. .+.++++|++|++++|.+...|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 444 22 2444444444444444444333
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=3e-10 Score=103.26 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=51.3
Q ss_pred CEEEecCCCCccCCCCCCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCcc-cCCCCCCcEEEccCCC
Q 005639 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDRCA 167 (686)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 167 (686)
+.++++++.+..+|... .+++++|++++|.+. .++...|.++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45666666665555433 245555555555544 33333345555555555555555554433 3455555555555555
Q ss_pred CCC-c-hhhcCCCCCcEEEccCCCCc
Q 005639 168 LGD-I-AIIGNLKKLEILSLVDSNIE 191 (686)
Q Consensus 168 l~~-~-~~i~~L~~L~~L~l~~~~l~ 191 (686)
++. + ..+.++++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 544 2 23445555555555555443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=1.5e-10 Score=117.90 Aligned_cols=188 Identities=18% Similarity=0.149 Sum_probs=115.9
Q ss_pred cCCCCEEEecCCCCc--------------------cCCCCC--C--------CCCCcEEEecCCccCCccChhhhhCCCC
Q 005639 85 LKNCPTIFLHDCKHW--------------------EVPEGL--E--------YPQLEFFCMSPRDHSIKIPNHVFAGMSN 134 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~~~~~~~~~~~~f~~l~~ 134 (686)
..+++.|++++|++. .++... . +++|+.+.+.+ .+. .++...|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 567888888877765 233322 5 67777777776 444 667777777777
Q ss_pred CcEEEecCCCCccCCc-ccCCCCCCcEEEccCCC-------CCC---------------------c--------------
Q 005639 135 LRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA-------LGD---------------------I-------------- 171 (686)
Q Consensus 135 Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~-------l~~---------------------~-------------- 171 (686)
|+.+++.++.+..+++ ++..+.++.++...... +.. +
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 7777777777665443 45556666666554411 000 0
Q ss_pred -------------hhh-cCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCc-EEEcCC
Q 005639 172 -------------AII-GNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGN 235 (686)
Q Consensus 172 -------------~~i-~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~ 235 (686)
..+ ..+.+|+.+++++|+++.+|.. +..+++|+.+++..+ ++.++.+.|.++++|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 000 0256777777777777777765 677777777777764 6777777777777777 777765
Q ss_pred CccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccc--cCccEE
Q 005639 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFS--KKLERY 288 (686)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L 288 (686)
.+. ......+.++++|+.+++..+.+..++..++. .+|+.+
T Consensus 284 -~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 -SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred -cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 222 11224566777777777777777776665543 445443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=3.9e-10 Score=116.23 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=75.9
Q ss_pred hcCCCCEEEecCCCCccCC-----CCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-----CCcc
Q 005639 84 MLKNCPTIFLHDCKHWEVP-----EGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-----LPSL 151 (686)
Q Consensus 84 ~~~~lr~l~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-----lp~~ 151 (686)
..+.++.+++++|.+.... ... ..++|++|++++|.+.......++..+++|+.|+|++|.+.. +...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566777777777663211 110 224666666666655432222333344556666666665543 1111
Q ss_pred c-CCCCCCcEEEccCCCCCC------chhhcCCCCCcEEEccCCCCcc-----ccHHHhcCCCCCEEeccCCCCCcccCc
Q 005639 152 F-HLPLNLQTLCLDRCALGD------IAIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (686)
Q Consensus 152 i-~~l~~L~~L~l~~~~l~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p~ 219 (686)
+ ....+|++|++++|.++. +..+...++|++|++++|.+.. ++..+...++|++|++++|. ++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 2 234556666666665543 1233455556666666665542 23344455556666665554 332211
Q ss_pred c----cccCCCCCcEEEcCCCccc
Q 005639 220 N----LLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 220 ~----~i~~L~~L~~L~l~~~~~~ 239 (686)
. .+...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 1233455555555555443
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=5.7e-09 Score=107.09 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=73.9
Q ss_pred EEEecCC-CCccCCcccCCCCCCcEEEccC-CCCCC--chhhcCCCCCcEEEccCCCCccccH-HHhcCCCCCEEeccCC
Q 005639 137 GLALSNM-QFLSLPSLFHLPLNLQTLCLDR-CALGD--IAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGC 211 (686)
Q Consensus 137 ~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~-~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 211 (686)
.++++++ .++.+|. +..+.+|++|+|++ |.+.. +..+++|.+|++|+|++|+++.+|. .++++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3467776 7777777 77777888888875 77776 3567788888888888888877655 4678888888888887
Q ss_pred CCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
. +..+|...+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6 7777776555555 888888777654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=3.5e-10 Score=116.59 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=117.3
Q ss_pred CCCCcEEEecCCccCCccChh---hhh-CCCCCcEEEecCCCCcc--CCcccCCCCCCcEEEccCCCCCC--chhh----
Q 005639 107 YPQLEFFCMSPRDHSIKIPNH---VFA-GMSNLRGLALSNMQFLS--LPSLFHLPLNLQTLCLDRCALGD--IAII---- 174 (686)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~---~f~-~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~i---- 174 (686)
++.|++|++++|.+....... .+. ..++|+.|+|++|.+.. +..-...+++|++|++++|.+.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999876322111 112 33799999999998864 22222346789999999999987 3444
Q ss_pred -cCCCCCcEEEccCCCCcc-----ccHHHhcCCCCCEEeccCCCCCcccC----cccccCCCCCcEEEcCCCcccccccc
Q 005639 175 -GNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIP----PNLLSGLSRLEDLYMGNTSVKWEFEG 244 (686)
Q Consensus 175 -~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p----~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (686)
....+|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~--- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT--- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence 356899999999998874 55667889999999999987 65432 12267788999999999987511
Q ss_pred ccccccccchhhhccCCCCcEEEEEecCCccc
Q 005639 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (686)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (686)
........+...++|++|++++|.+...
T Consensus 227 ----g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 227 ----AALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp ----HHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred ----HHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 0112335567788999999999987544
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.6e-08 Score=102.80 Aligned_cols=167 Identities=10% Similarity=0.066 Sum_probs=129.9
Q ss_pred cCCCCEEEecCCCCccCCCCC--CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCC----ccC----------
Q 005639 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF----LSL---------- 148 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~----~~l---------- 148 (686)
..+++.+.+.. .+..++... .+++|+.+.+.+|.+. .++...|.++..+..+.+..... ..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 57888999988 787777644 8999999999998776 77778888888777776655211 000
Q ss_pred -------------Ccc---------------------------c-CCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEc
Q 005639 149 -------------PSL---------------------------F-HLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSL 185 (686)
Q Consensus 149 -------------p~~---------------------------i-~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l 185 (686)
+.. + ..+.+|+++++.+|.++. ...|.++.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 000 0 027899999999999988 467999999999999
Q ss_pred cCCCCccccHH-HhcCCCCC-EEeccCCCCCcccCcccccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCC
Q 005639 186 VDSNIEQLPEE-MAQLTQLR-LFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHL 263 (686)
Q Consensus 186 ~~~~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 263 (686)
..+ ++.++.. +..+.+|+ .+++.. .++.++.+.|.++++|+.+++.++.+.. .....+.++++|
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~-----------I~~~aF~~~~~L 323 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT-----------LGDELFGNGVPS 323 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE-----------ECTTTTCTTCCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc-----------cchhhhcCCcch
Confidence 997 8888876 89999999 999988 4899998889999999999998776652 122567778888
Q ss_pred cEEE
Q 005639 264 TTLE 267 (686)
Q Consensus 264 ~~L~ 267 (686)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 8775
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.2e-08 Score=102.70 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=43.0
Q ss_pred hhCCCCCcEEEecC-CCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHHHhcCCCCC
Q 005639 129 FAGMSNLRGLALSN-MQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR 204 (686)
Q Consensus 129 f~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 204 (686)
+..+++|++|+|++ |.+..+| ..++.+.+|++|+|++|.++. |..|++|++|++|+|++|+++.+|..+.....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34455555555553 5555544 345555555555555555554 3345555555555555555555554433322355
Q ss_pred EEeccCCC
Q 005639 205 LFDLSGCS 212 (686)
Q Consensus 205 ~L~l~~~~ 212 (686)
+|++.+|.
T Consensus 107 ~l~l~~N~ 114 (347)
T 2ifg_A 107 ELVLSGNP 114 (347)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 55555544
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=9.9e-07 Score=91.61 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=107.0
Q ss_pred CCCEEEecCCCCccCCCC--CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEc
Q 005639 87 NCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (686)
Q Consensus 87 ~lr~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l 163 (686)
+++.+.+.. .+..+... ..+++|+.+.+.+|.+. .++...|. ...|+.+.+..+ +..++ .++.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 566777664 55555543 37788888888877665 66666676 467777777643 55544 35667777777777
Q ss_pred cCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCC----CcccCcccccCCCCCcEEEcCCC
Q 005639 164 DRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSK----LKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 164 ~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~----l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
..+ ++. ...+.+ .+|+.+.+.. +++.++.. +.++++|+.+++.++.. ...++...+.++++|+.+.+..+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred CCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 653 333 344444 5677777633 45555443 66667777776665431 12466656666777777666532
Q ss_pred ccccccccccccccccchhhhccCCCCcEEEEEecCCcccCccccc-cCccEEEEEE
Q 005639 237 SVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFS-KKLERYKIFI 292 (686)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~ 292 (686)
+. ...-..+.++.+|+.+.+.. .+..+...++. .+|+.+.+..
T Consensus 311 -i~-----------~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 311 -IR-----------ILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp -CC-----------EECTTTTTTCCSCCEEEECT-TCCEECTTSSSSSCCCEEEECC
T ss_pred -eE-----------EEhhhhhcCCCCccEEEECc-cccEEcHHhCCCCCCCEEEEcC
Confidence 21 01123455556666666632 24444444332 2566655543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=2.4e-06 Score=88.69 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=49.5
Q ss_pred CCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEcc
Q 005639 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLV 186 (686)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~ 186 (686)
+|+.+.+..+ +. .+....|.++ .|+.+++.+ .++.++ .++.+|.+|+.+++.++.++. +.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4555554433 21 3444444442 355555443 333332 234445555555555444444 2221123444555444
Q ss_pred CCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEc
Q 005639 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (686)
Q Consensus 187 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (686)
.+ ++.++.. +.++++|+.+++..+ ++.++...+.+ .+|+.+.+
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence 22 4444332 444444444444431 34444443433 34444444
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=2.5e-07 Score=82.63 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=49.9
Q ss_pred CcccEEeecccccceecccCccccccCCccEEEEecCCCCccccChhHHhh----cccccEEEEecccccceeecccccc
Q 005639 531 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRN----FVQLEHLEICYCSSLESIVGKESGE 606 (686)
Q Consensus 531 ~~L~~L~i~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~~~~----l~~L~~L~i~~c~~L~~~~~~~~~~ 606 (686)
..|++|++++|.++......+. .+++|++|++++|.++++-. ...+.. .++|++|+|++|+.+++- |.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~-----Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDK-----GI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHH-----HH
T ss_pred ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHH-----HH
Confidence 3577777777765543332232 56777777777777766541 111222 235777777777666553 22
Q ss_pred cccccccccccceeecccCCCcCe
Q 005639 607 EATTTFVFPKVTFLKLWNLSELKT 630 (686)
Q Consensus 607 ~~~~~~~~~~L~~L~i~~c~~L~~ 630 (686)
.. ...+++|++|+|++|++++.
T Consensus 133 ~~--L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IA--LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HH--GGGCTTCCEEEEESCTTCCC
T ss_pred HH--HhcCCCCCEEECCCCCCCCc
Confidence 11 23456666666666665554
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=1.2e-07 Score=84.67 Aligned_cols=92 Identities=11% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCccEEEEecCCCCccccChhHHhhcccccEEEEecccccceeecccccccccccc--cccccceeecccCCCcCeeecC
Q 005639 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTF--VFPKVTFLKLWNLSELKTFYPG 634 (686)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~p~~~~~~l~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~--~~~~L~~L~i~~c~~L~~l~~~ 634 (686)
..|++|++++|. +++. ....+..+++|++|++++|..+++- |....... .+++|++|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 479999999996 7765 2334478999999999999988764 22111111 2468999999999999875443
Q ss_pred CCcCCCCCccEEEEecCCCcee
Q 005639 635 THTSKWPMLKKLEVYGCDKVKI 656 (686)
Q Consensus 635 ~~~~~~~~L~~L~I~~C~~L~~ 656 (686)
.. ..+++|++|++++||+++.
T Consensus 134 ~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 AL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HG-GGCTTCCEEEEESCTTCCC
T ss_pred HH-hcCCCCCEEECCCCCCCCc
Confidence 22 2579999999999999875
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=4.6e-07 Score=92.37 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=110.9
Q ss_pred cCCCCEEEecCCCCcc---------CCCCC-CCCCCcEEEecCCccC--------CccChhhhhCCCCCcEEEecCCCCc
Q 005639 85 LKNCPTIFLHDCKHWE---------VPEGL-EYPQLEFFCMSPRDHS--------IKIPNHVFAGMSNLRGLALSNMQFL 146 (686)
Q Consensus 85 ~~~lr~l~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~--------~~~~~~~f~~l~~Lr~L~L~~~~~~ 146 (686)
+..++.|.+....... +.... .+++|+.|.+...... ..-...++..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3457788877544321 11112 5678999988654221 0112355678899999999887423
Q ss_pred cCCcccCCCCCCcEEEccCCCCCC--chhhc--CCCCCcEEEccCC--C------CccccHHH--hcCCCCCEEeccCCC
Q 005639 147 SLPSLFHLPLNLQTLCLDRCALGD--IAIIG--NLKKLEILSLVDS--N------IEQLPEEM--AQLTQLRLFDLSGCS 212 (686)
Q Consensus 147 ~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp~~i--~~l~~L~~L~l~~~~ 212 (686)
.++. +. +++|+.|++..|.+.. ...++ ++++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 4554 43 8899999999888765 44554 7899999998531 1 22222222 357899999998876
Q ss_pred CCcccCccc--ccCCCCCcEEEcCCCccccccccccccccccchhhhccCCCCcEEEEEecCC
Q 005639 213 KLKVIPPNL--LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (686)
Q Consensus 213 ~l~~~p~~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (686)
.....+..+ ...+++|++|+++.|.+... ........+.++++|+.|+++.|.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-------G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDE-------GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHH-------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChH-------HHHHHHhhcccCCcceEEECCCCcC
Confidence 322222211 13578899999988765410 0011233456778899999887754
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=3.8e-05 Score=79.84 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=31.4
Q ss_pred ccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEc
Q 005639 123 KIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSL 185 (686)
Q Consensus 123 ~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l 185 (686)
.+....|.++.+|+.+.+.. .++.+++ ++.++.+|+.+++..+ ++. ...+.++.+|+.+.+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 45555566666666666643 3444432 4555666666666433 222 234444455544443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8e-05 Score=77.35 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCCc-ccCCCCCCcEEEccCCCCCC--chhhcCCCCCc
Q 005639 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD--IAIIGNLKKLE 181 (686)
Q Consensus 105 ~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~ 181 (686)
.++.+|+++.+..+ +. .+....|.++.+|+.+++..+ ++.+++ ++..+..|+.+.+..+ +.. ...+.+...+.
T Consensus 68 ~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 37888999998643 33 777888999999999998654 555543 5677888887766543 222 34455554433
Q ss_pred EEEccCCCCccccH-HHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCC
Q 005639 182 ILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 182 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
..... .+..+.. .+.++++|+.+.+..+ +..++.+.+..+.+|+.+.+..+
T Consensus 144 ~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 144 ITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 33222 2333332 3677888888888753 56777777888888888877554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=2e-06 Score=78.89 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=59.3
Q ss_pred hhhCCCCCcEEEecCC-CCcc-----CCcccCCCCCCcEEEccCCCCCC--c----hhhcCCCCCcEEEccCCCCcc---
Q 005639 128 VFAGMSNLRGLALSNM-QFLS-----LPSLFHLPLNLQTLCLDRCALGD--I----AIIGNLKKLEILSLVDSNIEQ--- 192 (686)
Q Consensus 128 ~f~~l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~~--- 192 (686)
.+...+.|+.|+|++| .+.. +...+...++|++|++++|.+.+ . ..+...+.|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777766 5542 34445556667777777776654 1 233444566666666666552
Q ss_pred --ccHHHhcCCCCCEEec--cCCCCCcc-----cCcccccCCCCCcEEEcCCCcc
Q 005639 193 --LPEEMAQLTQLRLFDL--SGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSV 238 (686)
Q Consensus 193 --lp~~i~~l~~L~~L~l--~~~~~l~~-----~p~~~i~~L~~L~~L~l~~~~~ 238 (686)
+...+...++|++|++ ++|. +.. +.. .+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 3344555556666666 4444 322 111 133345566666555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=7.7e-06 Score=83.30 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=101.7
Q ss_pred hhcCCCCEEEecCCCCc----------cCCCCC-CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCcc-CCc
Q 005639 83 DMLKNCPTIFLHDCKHW----------EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPS 150 (686)
Q Consensus 83 ~~~~~lr~l~l~~~~~~----------~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~-lp~ 150 (686)
...++++.|.+.....+ .+.... .+++|+.|.+.++... .++. +. +++|+.|++..+.+.. ...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHH
Confidence 34679999999754331 121222 6789999999987422 3443 33 7899999999887643 112
Q ss_pred cc--CCCCCCcEEEccCC--C------CCCc-hhh--cCCCCCcEEEccCCCCcc-ccHHHh---cCCCCCEEeccCCCC
Q 005639 151 LF--HLPLNLQTLCLDRC--A------LGDI-AII--GNLKKLEILSLVDSNIEQ-LPEEMA---QLTQLRLFDLSGCSK 213 (686)
Q Consensus 151 ~i--~~l~~L~~L~l~~~--~------l~~~-~~i--~~L~~L~~L~l~~~~l~~-lp~~i~---~l~~L~~L~l~~~~~ 213 (686)
.+ ..+++|++|+|+.+ . +... ..+ ..+++|++|++++|.+.. .+..+. .+++|++|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 23 37899999998632 1 1111 122 357999999999998763 333333 58899999999876
Q ss_pred Ccc-----cCcccccCCCCCcEEEcCCCccc
Q 005639 214 LKV-----IPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 214 l~~-----~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+.. ++.. +..+++|+.|+++.|.+.
T Consensus 291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 291 LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 555 3333 466899999999998765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=5.3e-06 Score=76.01 Aligned_cols=107 Identities=10% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCCCcEEEecCC-ccCCc---cChhhhhCCCCCcEEEecCCCCcc-----CCcccCCCCCCcEEEccCCCCCC------
Q 005639 106 EYPQLEFFCMSPR-DHSIK---IPNHVFAGMSNLRGLALSNMQFLS-----LPSLFHLPLNLQTLCLDRCALGD------ 170 (686)
Q Consensus 106 ~~~~Lr~L~l~~~-~~~~~---~~~~~f~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~------ 170 (686)
..+.|++|++++| .+... .....+...+.|++|+|++|.+.. +...+...++|++|++++|.|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4556677777766 54321 112234556778888888887753 44455566778888888888776
Q ss_pred chhhcCCCCCcEEEc--cCCCCcc-----ccHHHhcCCCCCEEeccCCC
Q 005639 171 IAIIGNLKKLEILSL--VDSNIEQ-----LPEEMAQLTQLRLFDLSGCS 212 (686)
Q Consensus 171 ~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 212 (686)
...+...+.|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 245666778888888 7777763 44556677888888888875
No 155
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.96 E-value=9.7e-07 Score=96.05 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=42.9
Q ss_pred hhhhhcc--ccccc---cchHHHHHHHHHHHHHHHhhccccccCC--CCCcEEechhhHHHHHHHhhccc
Q 005639 4 LKYGTGL--HIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (686)
Q Consensus 4 i~~Wiae--Gfi~~---~~~~e~~~~~~~~~i~~L~~~sl~~~~~--~~~~~~mHdli~dla~~i~~~e~ 66 (686)
|++|+|+ ||+.. ..+.+++.+ ++++|+++||++... ...+|+|||+|||+|+.++++++
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6799999 99973 233444333 578999999999763 34679999999999999988765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=1.6e-05 Score=76.54 Aligned_cols=62 Identities=29% Similarity=0.313 Sum_probs=32.3
Q ss_pred hCCCCCcEEEecCCCCccCC---cccCCCCCCcEEEccCCCCCCchhhcCCC--CCcEEEccCCCCc
Q 005639 130 AGMSNLRGLALSNMQFLSLP---SLFHLPLNLQTLCLDRCALGDIAIIGNLK--KLEILSLVDSNIE 191 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~~~~i~~L~--~L~~L~l~~~~l~ 191 (686)
.++++|+.|+|++|.+..++ ..++.+++|++|+|++|.++....+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 34555666666666555432 33345555666666555555533333333 5555555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=4.5e-06 Score=80.50 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCCCcEEEccCCCCCCc----hhhcCCCCCcEEEccCCCCccccHHHhcCC--CCCEEeccCCC
Q 005639 154 LPLNLQTLCLDRCALGDI----AIIGNLKKLEILSLVDSNIEQLPEEMAQLT--QLRLFDLSGCS 212 (686)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~ 212 (686)
++++|++|+|++|.++.. ..+..+++|++|+|++|.++.+. .+..+. +|++|++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 455666666666665551 23345566666666666555442 233333 55555555555
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.017 Score=59.59 Aligned_cols=120 Identities=10% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCcEEEecCCccCCccChhhhhCCCCCcEEEecCCC---CccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcE
Q 005639 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ---FLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEI 182 (686)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~---~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~ 182 (686)
.|+++.+..+ +. .+....|.++.+|+.+.+..+. ++.++ .++..+..|+.+.+..+ ++. ...+....+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4777776543 22 5666667777777777776543 44443 24566667776665443 333 345667777777
Q ss_pred EEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCC
Q 005639 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (686)
Q Consensus 183 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (686)
+.+..+ +..++.. +..+.+|+.+.+..+ +..+....+.. .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 777643 4444433 566777777777652 56666654543 4566666644
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.52 E-value=0.0099 Score=61.38 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=33.4
Q ss_pred cCCCCCCcEEEccCCCCCC-chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCc
Q 005639 152 FHLPLNLQTLCLDRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (686)
Q Consensus 152 i~~l~~L~~L~l~~~~l~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (686)
+..+..|+.+.+......- ...+.++.+|+.+.+.. .++.++.. +..+.+|+.+++..+ ++.+....+.++++|+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence 3344444444443322111 23344444444444432 24444333 444444555444431 3444444444444555
Q ss_pred EEEc
Q 005639 230 DLYM 233 (686)
Q Consensus 230 ~L~l 233 (686)
.+.+
T Consensus 338 ~i~i 341 (394)
T 4gt6_A 338 RIAI 341 (394)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.03 E-value=0.047 Score=55.86 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=47.2
Q ss_pred hhCCCCCcEEEecCCCCccC-CcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCCCccccHH-HhcCCCCC
Q 005639 129 FAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLR 204 (686)
Q Consensus 129 f~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~ 204 (686)
|.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++. ...+.+..+|+.+.+.. +++.++.. +..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 444555555554332 2222 123344555555555433 222 23444455555555543 24444432 44555555
Q ss_pred EEeccCCCCCcccCcccccCCCCCcEEEcC
Q 005639 205 LFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (686)
Q Consensus 205 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (686)
.+.+.++. ++.++...+.++.+|+.+.+.
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 55554433 455555555555555555553
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.02 E-value=0.037 Score=56.65 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCCCCcEEEecCCccCCccChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccCCCCCC--chhhcCCCCCcE
Q 005639 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEI 182 (686)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~ 182 (686)
.+.+++.+.+..+ . ..+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+... +.. ...+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-V-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-C-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-e-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 6677888877654 2 2566667888899999988764 55544 35677888999988654 444 456788899999
Q ss_pred EEccCCCCccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCC
Q 005639 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 183 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
+.+.++.++.++.. +.++.+|+.+.+.. .++.++..++.++++|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 99988888888765 78889999999975 278888888899999998887543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.91 E-value=0.048 Score=45.92 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=26.0
Q ss_pred EEEecCCCCc--cCCcccCCCCCCcEEEccCCCCCC--chhhcCCCCCcEEEccCCC
Q 005639 137 GLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEILSLVDSN 189 (686)
Q Consensus 137 ~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~--~~~i~~L~~L~~L~l~~~~ 189 (686)
+++.++..++ .+|..+ -.+|++|+|++|.|+. +..+..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 555432 1345555555555554 2334455555555555553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.029 Score=47.31 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=38.8
Q ss_pred EEEccCCCCc--cccHHHhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCCccc
Q 005639 182 ILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (686)
Q Consensus 182 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (686)
+++.++.+++ .+|..+ -.+|++|++++|. ++.+|.+.+..+++|++|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 677432 2357888888876 77788777777888888888877654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.64 E-value=0.038 Score=50.04 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCCCCCcEEEccCCCCCC--c----hhhcCCCCCcEEEccCCCCc-----cccHHHhcCCCCCEEeccC
Q 005639 153 HLPLNLQTLCLDRCALGD--I----AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSG 210 (686)
Q Consensus 153 ~~l~~L~~L~l~~~~l~~--~----~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~ 210 (686)
..-.+|+.|+|++|.+.+ . ..+..-+.|++|+|++|.|. .+-..+..-+.|++|++++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 333445555555554443 1 22223344555555555444 1222233334456666554
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.39 E-value=0.043 Score=49.69 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=30.0
Q ss_pred hCCCCCcEEEecCCCCcc-----CCcccCCCCCCcEEEccCCCCCC--c----hhhcCCCCCcEEEccCC
Q 005639 130 AGMSNLRGLALSNMQFLS-----LPSLFHLPLNLQTLCLDRCALGD--I----AIIGNLKKLEILSLVDS 188 (686)
Q Consensus 130 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--~----~~i~~L~~L~~L~l~~~ 188 (686)
..-+.|+.|+|++|.+.. +.+.+..-+.|++|+|++|.|.. . ..+..-+.|++|+++++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344556666666665542 22333334556666666666554 1 23334445666666543
No 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.93 E-value=0.048 Score=61.85 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.7
Q ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHHhhccccccCCCCCcEEechhhHHHHH
Q 005639 3 LLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPTEDWIRMHDLVREVAI 59 (686)
Q Consensus 3 Li~~WiaeGfi~~~~~~e~~~~~~~~~i~~L~~~sl~~~~~~~~~~~mHdli~dla~ 59 (686)
++.+|+++|. ++++ +++++|+++|||+..+....|+|||++++++.
T Consensus 392 La~LW~aeGe-------edAe----~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 392 LSLIWFDVIK-------SDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHCSSCS-------HHHH----HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhcCCCH-------HHHH----HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 6788998871 2343 45788999999998655678999999999764
No 167
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.04 E-value=0.091 Score=63.10 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccccccCCCC--CcEEechhhHHHHHHHhhcc
Q 005639 25 RLYALVHKLKDYCLLLDGPTE--DWIRMHDLVREVAISIASRD 65 (686)
Q Consensus 25 ~~~~~i~~L~~~sl~~~~~~~--~~~~mHdli~dla~~i~~~e 65 (686)
.+.+++++|+++||++..... .+|+|||+||++|+..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 345567888889999876322 25999999999999987765
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=79.23 E-value=1.3 Score=48.11 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccccccCC--CCCcEEechhhHHHHHHHh
Q 005639 25 RLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIA 62 (686)
Q Consensus 25 ~~~~~i~~L~~~sl~~~~~--~~~~~~mHdli~dla~~i~ 62 (686)
.+.+++++|+++||++... ....|.|||++|++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 3456688899999998543 2347999999999999874
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.40 E-value=67 Score=24.89 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred CccccHH-HhcCCCCCEEeccCCCCCcccCcccccCCCCCcEEEcCCC
Q 005639 190 IEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (686)
Q Consensus 190 l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (686)
++.+... +..+.+|+.+.+..+ ++.+....|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 4444333 566677777776652 56666666777777777766543
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.33 E-value=1.1e+02 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=18.5
Q ss_pred cChhhhhCCCCCcEEEecCCCCccCC-cccCCCCCCcEEEccC
Q 005639 124 IPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDR 165 (686)
Q Consensus 124 ~~~~~f~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~ 165 (686)
+....|.++..|+.+.+-.+ ++.+. .+|.++.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444555555555555432 22222 2344555555555543
Done!