BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005640
(686 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/508 (93%), Positives = 499/508 (98%)
Query: 179 VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGIN 238
VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFG+N
Sbjct: 259 VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLN 318
Query: 239 HEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAI 298
HE T+MLYPL++SS+GILVCL+TTLFATD FE+KAVKEIEP+LKKQL+ISTVLMT+G+A+
Sbjct: 319 HELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAV 378
Query: 299 VSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 358
VS++ LP+SFTI+NFG QK VK+WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD
Sbjct: 379 VSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 438
Query: 359 SCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLA 418
SCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSF+FAAMYGIAVAALGMLSTIATGLA
Sbjct: 439 SCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMYGIAVAALGMLSTIATGLA 498
Query: 419 IDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA 478
IDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA
Sbjct: 499 IDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA 558
Query: 479 FVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGL 538
FVSRA ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGL
Sbjct: 559 FVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGL 618
Query: 539 MEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQ 598
MEGT KPDYATCVKISTDASIKEMIPPGALVMLTPL+VGI FGVETLSGVLAGSLVSGVQ
Sbjct: 619 MEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQ 678
Query: 599 IAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLN 658
IAISASNTGGAWDNAKKYIEAGASEHAR+LGPKGS+ HKAAVIGDTIGDPLKDTSGPSLN
Sbjct: 679 IAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLN 738
Query: 659 ILIKLMAVESLVFAPFFATHGGLLFKIF 686
ILIKLMAVESLVFAPFFATHGGLLFKIF
Sbjct: 739 ILIKLMAVESLVFAPFFATHGGLLFKIF 766
Score = 288 bits (738), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 159/181 (87%)
Query: 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIE 60
MG+ +L +L TEIL+PVCAV+GI F+L QW +VS+V+L+ R S N+ KNG+NDYLIE
Sbjct: 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIE 60
Query: 61 EEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTK 120
EEEGIND +VV KCA+IQ+AISEGATSFLFTEY+YVG+FM+AFAILIF+FLGSVEGFST
Sbjct: 61 EEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTS 120
Query: 121 GQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVG 180
QAC+YD+ K CKPALATA FSTVSFLLG +TS++SGFLGMKIATYANARTTLEARK VG
Sbjct: 121 PQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVG 180
Query: 181 K 181
K
Sbjct: 181 K 181
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/526 (42%), Positives = 325/526 (61%), Gaps = 42/526 (7%)
Query: 179 VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVAS------I 232
VGK E N+PEDDPRNPA IADNVGDNVGD+AG+G+DL S+ + +++++AS +
Sbjct: 217 VGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFPIYV 276
Query: 233 SSFGIN--HEFTS------MLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQ 284
G N H+ + YP+ + +G+ ++ L+ + K + L
Sbjct: 277 QKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILY---VIVKKPSDNPQRELNIS 333
Query: 285 LIISTVLMTVGIAIVSWIGLPSSFTI----YNFGAQKVVKNWQLFLCVAVGLWAGLIIGF 340
L S +L V A +++ L + + FGA + W +G+++G++IGF
Sbjct: 334 LWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA---ISPW---FSAIIGIFSGILIGF 387
Query: 341 VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMY 400
EYYTS Y P Q + S G + GL+LG KSV P + + I + FA +Y
Sbjct: 388 WAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFPPTLTLVLGILFADYFAGLY 447
Query: 401 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 460
G+A+AALGMLS +AT +++D+YGPI+DNAGGI+EM + +R+ TD LDA GNTTAAIG
Sbjct: 448 GVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIG 507
Query: 461 KGFAIGSAALVSLALFGAFV------SRAG-----ITTVDVLTPKVFIGLIVGAMLPYWF 509
KGFAIGSA +L+LF +++ S G + +++L +V G ++GA + Y+F
Sbjct: 508 KGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYF 567
Query: 510 SAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALV 569
S + +V AA+KMV+E+RRQ IPGL+EG KPDY C++I++D ++K+M P +
Sbjct: 568 SGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIA 627
Query: 570 MLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLG 629
+LTPL+ G G E + GVL G+++SG +AI +N+GGAWDNAKKY+EAG E
Sbjct: 628 ILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSGGAWDNAKKYLEAGNLEGYG--- 684
Query: 630 PKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 675
KGSEPHKA VIGDT+GDPLKDT GPSL+ILIK+M+V S++ F
Sbjct: 685 -KGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVVSVIAVSIF 729
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 73 KCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMC 132
+ +I S I GA SFL E + + I AIL+ +F
Sbjct: 43 RMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF---------------------- 80
Query: 133 KPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS 178
T + V+FLLGA+ S +G +GMK+AT AN R AR +
Sbjct: 81 -----TTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTT 121
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 277 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 391
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 392 VSFSFAAMYGIAVAA 406
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 288 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 330
S + + VG W GLP+ +TI YN + WQL VA+
Sbjct: 272 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 316
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 288 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 330
S + + VG W GLP+ +TI YN + WQL VA+
Sbjct: 274 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 318
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 160 GMKIATYANARTTLEARKSVGKVE----RNIPEDDPRNPAVIADNVGDNVGDIAGMGSDL 215
+ + TY ++R L+A S + I + DPRNPA IA G + +D
Sbjct: 63 SLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQ-----GPLPATVADF 117
Query: 216 FGSYAESSCAALVV 229
+ ES C +V+
Sbjct: 118 WQMVWESGCVVIVM 131
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 635 PHKAAVIGDTIGDPLK--DTSGPSLNILIKLMAVESLVFAPFFATHGGL 681
P + A++ D +GD DTSG L+ + + L+ A A HGGL
Sbjct: 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGL 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,355,054
Number of Sequences: 62578
Number of extensions: 723697
Number of successful extensions: 1617
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 21
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)