Query 005640
Match_columns 686
No_of_seqs 144 out of 731
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 11:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 1E-237 2E-242 1960.4 68.9 684 3-686 1-765 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 4E-230 1E-234 1888.7 62.9 614 11-681 3-696 (697)
3 PLN02277 H(+) -translocating i 100.0 1E-225 2E-230 1862.9 59.4 606 18-676 2-730 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 5E-222 1E-226 1836.1 41.0 589 19-672 1-682 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-219 4E-224 1802.8 58.3 572 60-678 3-663 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 8E-215 2E-219 1706.9 53.7 600 10-677 4-701 (703)
7 PF03030 H_PPase: Inorganic H+ 70.0 39 0.00086 40.7 11.6 403 140-567 156-667 (682)
8 COG3104 PTR2 Dipeptide/tripept 68.3 1.4E+02 0.003 35.0 15.1 20 332-351 258-277 (498)
9 TIGR00833 actII Transport prot 62.0 75 0.0016 39.2 12.3 92 377-479 198-295 (910)
10 COG3808 OVP1 Inorganic pyropho 60.4 1.3E+02 0.0028 35.8 12.8 134 250-424 9-154 (703)
11 PF12670 DUF3792: Protein of u 55.1 1.8E+02 0.0039 27.1 11.2 102 218-337 14-115 (116)
12 PRK11677 hypothetical protein; 52.4 17 0.00036 35.4 3.7 32 325-356 3-34 (134)
13 PRK00733 hppA membrane-bound p 51.7 1.3E+02 0.0028 36.5 11.4 144 491-659 53-208 (666)
14 PLN02255 H(+) -translocating i 47.6 2.1E+02 0.0046 35.1 12.4 68 141-214 662-737 (765)
15 TIGR01104 V_PPase vacuolar-typ 46.8 1.9E+02 0.0042 35.2 11.8 103 71-214 563-673 (697)
16 PF06800 Sugar_transport: Suga 46.1 4.2E+02 0.0092 28.7 14.2 102 249-376 104-207 (269)
17 PF02355 SecD_SecF: Protein ex 43.1 1.2E+02 0.0026 30.8 8.3 74 523-604 103-179 (189)
18 PF00957 Synaptobrevin: Synapt 40.7 69 0.0015 28.1 5.5 40 71-110 40-83 (89)
19 TIGR03434 ADOP Acidobacterial 40.5 3E+02 0.0065 32.8 12.3 87 71-170 705-797 (803)
20 TIGR00921 2A067 The (Largely A 40.2 1.8E+02 0.0038 34.4 10.3 90 379-479 220-310 (719)
21 PF12331 DUF3636: Protein of u 38.7 21 0.00046 35.3 2.2 22 407-428 49-70 (149)
22 TIGR00966 3a0501s07 protein-ex 38.0 2.6E+02 0.0056 29.2 10.1 67 523-603 170-245 (246)
23 PF00344 SecY: SecY translocas 37.4 1E+02 0.0022 33.8 7.3 115 463-581 202-324 (346)
24 COG0385 Predicted Na+-dependen 36.1 3.5E+02 0.0077 30.1 11.1 69 285-358 132-200 (319)
25 PF12270 Cyt_c_ox_IV: Cytochro 34.9 2.2E+02 0.0047 28.1 8.3 79 90-203 2-80 (137)
26 COG1422 Predicted membrane pro 34.6 2.4E+02 0.0052 29.5 8.9 77 16-101 52-130 (201)
27 PRK08382 putative monovalent c 33.5 1.5E+02 0.0033 30.7 7.4 109 435-550 1-143 (201)
28 PF03672 UPF0154: Uncharacteri 31.7 72 0.0016 27.7 3.9 32 495-540 3-34 (64)
29 PF12263 DUF3611: Protein of u 31.4 2.6E+02 0.0057 28.6 8.6 84 321-419 19-132 (183)
30 PF04911 ATP-synt_J: ATP synth 30.5 21 0.00045 30.0 0.5 26 158-196 21-46 (54)
31 PF14015 DUF4231: Protein of u 30.5 3.4E+02 0.0075 24.2 8.4 36 141-176 54-89 (112)
32 PRK01610 putative voltage-gate 30.4 3.4E+02 0.0074 30.6 10.2 21 488-508 319-339 (418)
33 PRK09776 putative diguanylate 30.3 1E+03 0.022 29.2 14.9 21 247-267 71-91 (1092)
34 COG5336 Uncharacterized protei 30.0 62 0.0014 30.9 3.6 26 322-347 46-71 (116)
35 PF00110 wnt: wnt family; Int 28.5 54 0.0012 35.7 3.4 23 513-535 22-44 (310)
36 KOG0860 Synaptobrevin/VAMP-lik 28.0 1.9E+02 0.0041 27.9 6.4 24 71-94 59-88 (116)
37 COG4956 Integral membrane prot 28.0 6.6E+02 0.014 28.3 11.3 18 516-533 211-228 (356)
38 TIGR00931 antiport_nhaC Na+/H+ 27.6 9.9E+02 0.022 27.5 24.0 19 139-157 103-121 (454)
39 KOG0793 Protein tyrosine phosp 27.6 26 0.00057 42.3 0.9 15 186-200 795-809 (1004)
40 TIGR00245 conserved hypothetic 27.5 51 0.0011 35.0 3.0 64 496-570 123-186 (248)
41 TIGR00400 mgtE Mg2+ transporte 27.2 3.3E+02 0.0072 30.9 9.5 95 243-345 316-415 (449)
42 PF11712 Vma12: Endoplasmic re 27.2 1.7E+02 0.0038 28.1 6.3 26 277-302 71-98 (142)
43 PF15176 LRR19-TM: Leucine-ric 27.2 61 0.0013 30.4 3.0 36 321-356 16-58 (102)
44 PF03649 UPF0014: Uncharacteri 27.1 59 0.0013 34.5 3.3 64 496-570 129-192 (250)
45 PF03023 MVIN: MviN-like prote 26.7 5.3E+02 0.011 29.1 10.9 26 323-348 323-348 (451)
46 PF06738 DUF1212: Protein of u 26.7 1.4E+02 0.003 29.5 5.6 24 525-553 84-107 (193)
47 PRK13022 secF preprotein trans 26.7 3.9E+02 0.0085 28.8 9.4 75 524-606 200-277 (289)
48 COG3105 Uncharacterized protei 26.3 80 0.0017 31.0 3.7 30 323-352 6-35 (138)
49 COG1863 MnhE Multisubunit Na+/ 25.6 2.3E+02 0.0049 28.4 6.8 48 141-198 22-92 (158)
50 PRK01844 hypothetical protein; 25.6 1E+02 0.0023 27.3 4.0 32 495-540 10-41 (72)
51 PF14362 DUF4407: Domain of un 25.3 3.2E+02 0.007 29.0 8.5 27 325-351 46-72 (301)
52 PF06295 DUF1043: Protein of u 24.5 70 0.0015 30.5 3.0 24 328-351 2-25 (128)
53 smart00097 WNT1 found in Wnt-1 24.0 69 0.0015 35.0 3.2 23 513-535 19-41 (305)
54 PRK00523 hypothetical protein; 23.8 1.2E+02 0.0026 27.0 4.0 39 495-563 11-49 (72)
55 PTZ00219 Sec61 alpha subunit; 23.8 2.2E+02 0.0047 33.1 7.2 71 504-577 371-441 (474)
56 COG2056 Predicted permease [Ge 23.7 6.1E+02 0.013 29.2 10.3 41 72-112 237-279 (444)
57 PF03176 MMPL: MMPL family; I 23.7 1.4E+02 0.0031 31.7 5.4 129 379-519 170-304 (333)
58 COG4177 LivM ABC-type branched 23.7 92 0.002 34.1 4.1 48 440-488 187-237 (314)
59 PRK01844 hypothetical protein; 22.6 2.1E+02 0.0046 25.5 5.3 24 12-35 7-30 (72)
60 PRK05771 V-type ATP synthase s 22.5 1.4E+03 0.029 27.3 16.7 100 243-345 351-470 (646)
61 COG1288 Predicted membrane pro 22.4 3.6E+02 0.0079 31.5 8.4 33 78-110 261-293 (481)
62 TIGR00921 2A067 The (Largely A 22.3 1.3E+03 0.029 27.2 17.2 23 324-346 251-273 (719)
63 PRK10720 uracil transporter; P 21.2 1.2E+03 0.027 26.4 20.9 18 327-344 183-200 (428)
64 PRK15374 pathogenicity island 21.0 6.9E+02 0.015 30.0 10.4 91 420-532 368-460 (593)
65 PF10389 CoatB: Bacteriophage 21.0 2.1E+02 0.0045 23.5 4.5 31 5-35 14-44 (46)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1e-237 Score=1960.37 Aligned_cols=684 Identities=89% Similarity=1.337 Sum_probs=633.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-CCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHH
Q 005640 3 STLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSS-NSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAI 81 (686)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~-~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI 81 (686)
++++||.+++.+++++++++|+||+++++||+|++.++++.+++ +.++.++.+|++.+++||+++++.++||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I 80 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAI 80 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHH
Confidence 46899999999999999999999999999999999876554433 34566778999999988888888899999999999
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 005640 82 SEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGM 161 (686)
Q Consensus 82 ~EGA~AFL~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM 161 (686)
||||++||+||||+|++|++++++++++++++.++.+.+++++.++.++.|+++....++++++|++|++||+++||+||
T Consensus 81 ~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM 160 (765)
T PLN02255 81 SEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGM 160 (765)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877776544555566666777777788877778999999999999999999999
Q ss_pred HHHHHhhHHhHHHHhcC---------------------------------------------------------------
Q 005640 162 KIATYANARTTLEARKS--------------------------------------------------------------- 178 (686)
Q Consensus 162 ~vat~aNvRta~aA~~~--------------------------------------------------------------- 178 (686)
|+|||+|+|||+|||+|
T Consensus 161 ~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFa 240 (765)
T PLN02255 161 KIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFG 240 (765)
T ss_pred HHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHH
Confidence 99999999999999987
Q ss_pred -----------------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhcCCcccc
Q 005640 179 -----------------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEF 241 (686)
Q Consensus 179 -----------------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~~~~~~~ 241 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+....+..+..+
T Consensus 241 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~~~ 320 (765)
T PLN02255 241 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDF 320 (765)
T ss_pred HHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999999999963212222233
Q ss_pred chhHHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccch
Q 005640 242 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKN 321 (686)
Q Consensus 242 ~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~ 321 (686)
..++|||+++++||++|++|++++|.+++.++++|++++||+|+|+|++++++++|++++|++|+.+.....+.....++
T Consensus 321 ~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 400 (765)
T PLN02255 321 TAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVVKN 400 (765)
T ss_pred chhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccc
Confidence 46999999999999999999999986666777779999999999999999999999999999886543321222223457
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005640 322 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 401 (686)
Q Consensus 322 ~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyG 401 (686)
|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++||+||+||+++|++++++||+++|+||
T Consensus 401 ~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~glyG 480 (765)
T PLN02255 401 WQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAAMYG 480 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHHHHHHHHHHh
Q 005640 402 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 481 (686)
Q Consensus 402 iAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~alaLf~ay~~ 481 (686)
+|+|++|||||++++|++|+||||+||||||||||+|||||||+||+||++||||||+|||||||||+|+||+||++|++
T Consensus 481 iaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~ 560 (765)
T PLN02255 481 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 560 (765)
T ss_pred HHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhh
Q 005640 482 RAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKE 561 (686)
Q Consensus 482 ~~~~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~Alke 561 (686)
+.++..+|+.||+|++|+|+|+|+|||||+++|+||||||++||||||||||||||||||++||||+||||||||+||||
T Consensus 561 ~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAlke 640 (765)
T PLN02255 561 RAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 640 (765)
T ss_pred hcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCcccccccc
Q 005640 562 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVI 641 (686)
Q Consensus 562 Mi~Pgllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVv 641 (686)
||+|+++++++|+++|++||+++++|||+|++++|++||+||+|+||||||||||||+|++++..++||||||+||||||
T Consensus 641 Mi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVv 720 (765)
T PLN02255 641 MIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVI 720 (765)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHcCccccccccCCCCcHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999654444579999999999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 005640 642 GDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 686 (686)
Q Consensus 642 GDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~~~~~~~~~~~ 686 (686)
|||||||||||||||||||||||++|||||+|+|..++|++.+|.
T Consensus 721 GDTVGDPfKDTaGPslNiLIKlm~~vslv~ap~~~~~~~~~~~~~ 765 (765)
T PLN02255 721 GDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKWL 765 (765)
T ss_pred CCCCCCcccccccchHhHHHHHHHHHHHHHHHHHHhcCccceecC
Confidence 999999999999999999999999999999999999889998763
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=4.4e-230 Score=1888.73 Aligned_cols=614 Identities=86% Similarity=1.318 Sum_probs=571.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHHH
Q 005640 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (686)
Q Consensus 11 ~~~~~~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL~ 90 (686)
++|++++++++|++|++++++||+|++ +| +|||||||++|||||++||+
T Consensus 3 ~~~~~~~~~~~gl~~a~~~~~~v~~~~-------------------------~G------~~~M~~Ia~~I~eGA~afL~ 51 (697)
T TIGR01104 3 TEILIPVCAVIGIAYAVLQWVWVSRVK-------------------------LG------TAKMAEIQQAISEGATAFLF 51 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------CC------cHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999953 47 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhHH
Q 005640 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (686)
Q Consensus 91 rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvR 170 (686)
||||++++|++++++++++++++.+++ .++++++|++|++||++|||+|||+|||+|+|
T Consensus 52 rqyk~i~~~~vi~~v~l~~~~~~~~~~---------------------~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvR 110 (697)
T TIGR01104 52 TEYKYVAVFMVAFAVLIFVFLGSREGF---------------------SDFSTVAFLLGAVTSLLAGYLGMKIATYANAR 110 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc---------------------hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999997765531110 12799999999999999999999999999999
Q ss_pred hHHHHhcC------------------------------------------------------------------------
Q 005640 171 TTLEARKS------------------------------------------------------------------------ 178 (686)
Q Consensus 171 ta~aA~~~------------------------------------------------------------------------ 178 (686)
||+|||+|
T Consensus 111 tA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTK 190 (697)
T TIGR01104 111 TTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGIYTK 190 (697)
T ss_pred HHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCceeee
Confidence 99999987
Q ss_pred --------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhcCCccccchhHHhHHH
Q 005640 179 --------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLI 250 (686)
Q Consensus 179 --------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~~~~~~~~~v~~PL~i 250 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+....+.....+..++|||++
T Consensus 191 AADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~Pl~~ 270 (697)
T TIGR01104 191 AADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYPLAL 270 (697)
T ss_pred ccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999963322222233358999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHH
Q 005640 251 SSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAV 330 (686)
Q Consensus 251 ~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~ 330 (686)
+++||++|++|++++| .++++||+++||||+|+|++++++.+|++++|++|+.+....++.....++|++|+|+++
T Consensus 271 ~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 346 (697)
T TIGR01104 271 SSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAV 346 (697)
T ss_pred HHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHH
Confidence 9999999999999975 355568999999999999999999999999999987544322122234557899999999
Q ss_pred HHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005640 331 GLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGML 410 (686)
Q Consensus 331 Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyGiAiAa~GML 410 (686)
|+++|++|+++||||||++||||||||++|+||||||||+|+++||+||+||+++|++++++||+++|+||+|+|++|||
T Consensus 347 Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~GML 426 (697)
T TIGR01104 347 GLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAALGML 426 (697)
T ss_pred HHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHHHHHHHHHHhhhcCceeec
Q 005640 411 STIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDV 490 (686)
Q Consensus 411 st~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~alaLf~ay~~~~~~~~v~l 490 (686)
||++++|++|+||||+||||||||||+|||||||+||+||++||||||++||||||||+|+||+||++|++++++..+|+
T Consensus 427 st~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~~~l 506 (697)
T TIGR01104 427 STAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITTVDV 506 (697)
T ss_pred HHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHH
Q 005640 491 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 570 (686)
Q Consensus 491 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllav 570 (686)
.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|+++++
T Consensus 507 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll~i 586 (697)
T TIGR01104 507 LTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLLVM 586 (697)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCccccccccccccCCCCC
Q 005640 571 LTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLK 650 (686)
Q Consensus 571 l~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfK 650 (686)
++|+++|+++|+++++|+|+|++++|++||+||+|+||||||||||||+|+ ++++++||||||+|||||||||||||||
T Consensus 587 ~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~G~-~~~~~~ggKGS~aHkAaVvGDTVGDPfK 665 (697)
T TIGR01104 587 LTPLIVGFLFGVETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKYIEAGS-EHARSLGPKGSEAHKAAVIGDTVGDPLK 665 (697)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHhcCc-cccccCCCCCcHHhhccccCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999994 3344579999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 005640 651 DTSGPSLNILIKLMAVESLVFAPFFATHGGL 681 (686)
Q Consensus 651 DTaGPSlniLIKlm~~vslV~ap~~~~~~~~ 681 (686)
||||||||||||||++|||||+|+|..++++
T Consensus 666 DTaGPslNilIKlm~~vslv~ap~~~~~~~~ 696 (697)
T TIGR01104 666 DTSGPSLNILIKLMAVESLVFAPFFATHGGL 696 (697)
T ss_pred ccccchHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999887554
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.1e-225 Score=1862.87 Aligned_cols=606 Identities=41% Similarity=0.677 Sum_probs=553.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHHHhhHHHHH
Q 005640 18 CAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVG 97 (686)
Q Consensus 18 ~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL~rqYk~i~ 97 (686)
+++++|+||+|+++||+|++ +| ++||||||++|||||++||+||||+|+
T Consensus 2 ~~~l~l~~a~~~~~~v~~~~-------------------------~G------~~~M~~Ia~~I~eGA~afL~~qyk~i~ 50 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAKD-------------------------EG------PPEMVEISDAIRDGAEGFFRTQYGTIS 50 (730)
T ss_pred hHHHHHHHHHHHHHHHHcCC-------------------------CC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999953 57 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhHHhHHHHhc
Q 005640 98 VFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK 177 (686)
Q Consensus 98 ~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvRta~aA~~ 177 (686)
+|++++++++++++.+. +.+.++. ..+.++...+|+++++|++|++||++|||+|||+|||+|+|||+|||+
T Consensus 51 ~~~vv~~~~l~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~ 122 (730)
T PLN02277 51 KMAVVLAFVILGIYLFR-SLTPQQE-------AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARR 122 (730)
T ss_pred HHHHHHHHHHHHHHhcc-ccccccc-------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999997665541 1111110 112233445688999999999999999999999999999999999998
Q ss_pred C-------------------------------------------------------------------------------
Q 005640 178 S------------------------------------------------------------------------------- 178 (686)
Q Consensus 178 ~------------------------------------------------------------------------------- 178 (686)
|
T Consensus 123 ~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKA 202 (730)
T PLN02277 123 SAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKA 202 (730)
T ss_pred CHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeec
Confidence 7
Q ss_pred -------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhc--CCccccchhHHhHH
Q 005640 179 -------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHEFTSMLYPLL 249 (686)
Q Consensus 179 -------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~--~~~~~~~~v~~PL~ 249 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++++|+||..... ........++|||+
T Consensus 203 ADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~ 282 (730)
T PLN02277 203 ADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLV 282 (730)
T ss_pred cccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999964321 11111245999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcc---ccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHH
Q 005640 250 ISSIGILVCLITTLFATDIFEVKA---VKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 326 (686)
Q Consensus 250 i~a~gii~siig~~~v~~~~~~~~---~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~ 326 (686)
++++||++|++|++++|...++++ ++||+++||||+|+|++++++++|++++|++.+. .....||++|+
T Consensus 283 i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~--------~~~~~~~~~f~ 354 (730)
T PLN02277 283 VHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYTE--------QAPSAWFNFAL 354 (730)
T ss_pred HHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccchHHHHHH
Confidence 999999999999999863211111 3589999999999999999999999999887320 01113679999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---------
Q 005640 327 CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA--------- 397 (686)
Q Consensus 327 ~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~--------- 397 (686)
|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||+||+++|++++++||+++
T Consensus 355 ~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~ 434 (730)
T PLN02277 355 CGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGLVDEN 434 (730)
T ss_pred HHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----HHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHH
Q 005640 398 -----AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVS 472 (686)
Q Consensus 398 -----GlyGiAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~a 472 (686)
|+||+|+|++|||||++++|++|+||||+||||||+|||+||||||||||+||++||||||++||||||||+|+|
T Consensus 435 ~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~a 514 (730)
T PLN02277 435 GNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALAS 514 (730)
T ss_pred ccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc------CceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 005640 473 LALFGAFVSRAG------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPD 546 (686)
Q Consensus 473 laLf~ay~~~~~------~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPD 546 (686)
|+||++|+++++ ++.+||.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++|||
T Consensus 515 laLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~~kPd 594 (730)
T PLN02277 515 FLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYKEKPD 594 (730)
T ss_pred HHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence 999999999863 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhh------------chhhHHHHhhHHHHHHHHHHHHhhcccchhhhhh
Q 005640 547 YATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAK 614 (686)
Q Consensus 547 Y~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~------------G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAK 614 (686)
|+||||||||+||||||+|+++++++|+++|++| |+++++|||+|++++|++||+||+|+||||||||
T Consensus 595 Y~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi~m~NaGGAWDNAK 674 (730)
T PLN02277 595 YGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMALFLNTAGGAWDNAK 674 (730)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhHH
Confidence 9999999999999999999999999999999884 6699999999999999999999999999999999
Q ss_pred hHHhhcccccccccCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 005640 615 KYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 676 (686)
Q Consensus 615 KyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~ 676 (686)
||||+|++ ||||||+|||||||||||||||||||||||||||||++|||||+|+|.
T Consensus 675 KyIE~G~~------ggKGS~aHkAaVvGDTVGDPfKDTaGPSlNiLIKlm~~vslV~ap~~~ 730 (730)
T PLN02277 675 KYIETGAL------GGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPMFL 730 (730)
T ss_pred HHHhcCCC------CCCCcHHhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHhhC
Confidence 99999974 899999999999999999999999999999999999999999999974
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=4.7e-222 Score=1836.12 Aligned_cols=589 Identities=55% Similarity=0.894 Sum_probs=532.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 005640 19 AVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGV 98 (686)
Q Consensus 19 ~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL~rqYk~i~~ 98 (686)
++++|+||+|+++||+|++ +| +++||||+++|||||++||+||||+|++
T Consensus 1 ~~~~l~~a~~~~~~v~~~~-------------------------~G------~~~m~~Ia~~I~eGA~aFL~reYk~i~~ 49 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQD-------------------------EG------NEKMQEIAAAIQEGAMAFLKREYKTIAI 49 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCC-------------------------CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999953 57 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhHHhHHHHh-c
Q 005640 99 FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEAR-K 177 (686)
Q Consensus 99 ~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvRta~aA~-~ 177 (686)
|+++++++|++++...+ ..+|+++++|++|++||.+|||+|||+|||+|+|||+||| +
T Consensus 50 ~~vi~~~ll~~~~~~~~---------------------~~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~ 108 (682)
T PF03030_consen 50 FIVIVAILLFFLLGFLG---------------------GQGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTR 108 (682)
T ss_dssp HHHHHHHHHHHHHHCCC---------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHhhcc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcC
Confidence 99999999988764311 1357999999999999999999999999999999999995 6
Q ss_pred C-------------------------------------------------------------------------------
Q 005640 178 S------------------------------------------------------------------------------- 178 (686)
Q Consensus 178 ~------------------------------------------------------------------------------- 178 (686)
|
T Consensus 109 gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGA 188 (682)
T PF03030_consen 109 GLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGA 188 (682)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhh
Confidence 6
Q ss_pred --cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhcCCccccchhHHhHHHHHHHHH
Q 005640 179 --VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGIL 256 (686)
Q Consensus 179 --VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~~~~~~~~~v~~PL~i~a~gii 256 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+.............++|||+++++||+
T Consensus 189 DLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii 268 (682)
T PF03030_consen 189 DLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGII 268 (682)
T ss_dssp HHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986532111122379999999999999
Q ss_pred HHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHH
Q 005640 257 VCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 336 (686)
Q Consensus 257 ~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~ 336 (686)
+|++|++++|.. +.++.+||+|+||+|+|++++++++++|++++|++.... ......||++|+|+++|+++|+
T Consensus 269 ~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 269 ASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp HHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHHHHHH
Confidence 999999998753 233456999999999999999999999999999982111 1224568999999999999999
Q ss_pred HHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 005640 337 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAALGMLS 411 (686)
Q Consensus 337 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~-----GlyGiAiAa~GMLs 411 (686)
+|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|+++++.||+++ |+||+|+|++||||
T Consensus 342 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~GMLs 421 (682)
T PF03030_consen 342 LIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAVGMLS 421 (682)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHHHHHHHHHHhhh------cC
Q 005640 412 TIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA------GI 485 (686)
Q Consensus 412 t~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~alaLf~ay~~~~------~~ 485 (686)
|++++|++|+||||+||||||||||+||||||||||+|||+||||||+|||||||||+|+||+||++|++++ ..
T Consensus 422 t~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~ 501 (682)
T PF03030_consen 422 TAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSI 501 (682)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-
T ss_pred HhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred ceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcch
Q 005640 486 TTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPP 565 (686)
Q Consensus 486 ~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~P 565 (686)
..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+|||||++|
T Consensus 502 ~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P 581 (682)
T PF03030_consen 502 QSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILP 581 (682)
T ss_dssp S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHH
T ss_pred ccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCcccccccccccc
Q 005640 566 GALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTI 645 (686)
Q Consensus 566 gllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTV 645 (686)
+++++++|+++|+++|+++++|||+|++++|++||+||+|+||||||||||||+|++ ||||||+||||||||||
T Consensus 582 ~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g~~------ggKgS~aHkAaVvGDTV 655 (682)
T PF03030_consen 582 GLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQGNL------GGKGSEAHKAAVVGDTV 655 (682)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------HHTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCc------CCCCChhhCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999985 89999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHH
Q 005640 646 GDPLKDTSGPSLNILIKLMAVESLVFA 672 (686)
Q Consensus 646 GDPfKDTaGPSlniLIKlm~~vslV~a 672 (686)
|||||||||||||||||||+++||||+
T Consensus 656 GDP~KDTaGPslnilIKl~~~vslv~a 682 (682)
T PF03030_consen 656 GDPFKDTAGPSLNILIKLMSIVSLVFA 682 (682)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCcchHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=1.7e-219 Score=1802.78 Aligned_cols=572 Identities=51% Similarity=0.850 Sum_probs=541.7
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhh
Q 005640 60 EEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATA 139 (686)
Q Consensus 60 ~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (686)
++|+| +|+|||||++|||||++||+||||++++|+++++++++.+.. ....+
T Consensus 3 ~~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~~ 54 (666)
T PRK00733 3 KQPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFLG 54 (666)
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHHH
Confidence 45678 899999999999999999999999999999999999865411 01235
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhHHhHHHHhcC-----------------------------------------
Q 005640 140 AFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS----------------------------------------- 178 (686)
Q Consensus 140 ~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvRta~aA~~~----------------------------------------- 178 (686)
|+++++|++|++||+++||+|||+|||+|+|||+|||+|
T Consensus 55 ~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~~~~ 134 (666)
T PRK00733 55 WLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGANPD 134 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 689999999999999999999999999999999999977
Q ss_pred -------------------------------------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHH
Q 005640 179 -------------------------------------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAE 221 (686)
Q Consensus 179 -------------------------------------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~ 221 (686)
|||||+|||||||||||||||||||||||||||||||||||++
T Consensus 135 ~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy~~ 214 (666)
T PRK00733 135 DAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESYAV 214 (666)
T ss_pred hhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccchhHHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 005640 222 SSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSW 301 (686)
Q Consensus 222 ~~~aamvL~~~~~~~~~~~~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~ 301 (686)
+++++|+|+.... ....++..++|||+++++|+++|++|++++| .++++||+++||+|+|+|++++++++|++++
T Consensus 215 sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~ 289 (666)
T PRK00733 215 TIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFVR----LGKGGNPMKALNRGLIVTAVLSIVLTYFATY 289 (666)
T ss_pred HHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997321 1223456799999999999999999999975 4556899999999999999999999999999
Q ss_pred hhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHH
Q 005640 302 IGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVII 381 (686)
Q Consensus 302 ~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~ 381 (686)
|++|+.. ....||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+|+++||+||++
T Consensus 290 ~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St~~ 361 (666)
T PRK00733 290 WLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMESTAL 361 (666)
T ss_pred HHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHHHH
Confidence 9997521 23457899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccc
Q 005640 382 PIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 457 (686)
Q Consensus 382 pvl~i~~ai~~sy~l----~GlyGiAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTa 457 (686)
|+++|++++++||++ +|+||+++|++|||||+++++++|+||||+||||||+|||+||||||++||+||++|||||
T Consensus 362 pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTT~ 441 (666)
T PRK00733 362 PVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGNTTK 441 (666)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhcccchh
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhh-------cCceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005640 458 AIGKGFAIGSAALVSLALFGAFVSRA-------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRR 530 (686)
Q Consensus 458 Ai~KGfAIGSAaL~alaLf~ay~~~~-------~~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRR 530 (686)
|++||||||||+|+||+||++|++++ +...+|+.||+|++|+|+|+|+|||||+++|+||+|+|++|||||||
T Consensus 442 A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRr 521 (666)
T PRK00733 442 AVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRR 521 (666)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 56679999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchh
Q 005640 531 QFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAW 610 (686)
Q Consensus 531 QFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAW 610 (686)
|||||||||||++||||+||||||||+||||||+|+++++++|+++|+++|+++++|||+|++++|++||+||+|+||||
T Consensus 522 QFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi~m~NaGGAW 601 (666)
T PRK00733 522 QFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAIFMANAGGAW 601 (666)
T ss_pred HHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhhcccccccccCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 005640 611 DNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATH 678 (686)
Q Consensus 611 DNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~~~ 678 (686)
||||||||+|++ ||||||+|||||||||||||||||||||||||||||+++||||+|+|..+
T Consensus 602 DNAKKyIE~g~~------gGKgS~aHkAaVvGDTVGDPfKDTaGPslnilIKl~~~vslv~ap~~~~~ 663 (666)
T PRK00733 602 DNAKKYIEDGNH------GGKGSEAHKAAVVGDTVGDPFKDTAGPALNPLIKLMNIVALLIAPLLVHL 663 (666)
T ss_pred HHHHHHHhcCCC------CCCCcHHHhccccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999984 89999999999999999999999999999999999999999999999864
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=8.1e-215 Score=1706.93 Aligned_cols=600 Identities=48% Similarity=0.766 Sum_probs=561.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHH
Q 005640 10 ATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFL 89 (686)
Q Consensus 10 ~~~~~~~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL 89 (686)
...++.+.|++++++||.|++++|.| +|+| +||||||+.+|||||++||
T Consensus 4 ~~~~l~i~~gl~sv~~A~~~~~sVl~-------------------------~~~G------n~rm~eIa~aIreGA~ayL 52 (703)
T COG3808 4 SVLYLAIACGLLSVLYAAWAAKSVLR-------------------------ADAG------NERMKEIAAAIREGAMAYL 52 (703)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------ccCC------cHHHHHHHHHHHHhHHHHH
Confidence 35667789999999999999999988 4468 9999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhH
Q 005640 90 FTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANA 169 (686)
Q Consensus 90 ~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNv 169 (686)
+||||+|+++.+++++++.+++.. |.++++|++||+.|+.|||+||+++||+|+
T Consensus 53 ~rqy~tiavv~ivva~ll~~~l~~--------------------------~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~ 106 (703)
T COG3808 53 ARQYKTIAVVGIVVAILLAWFLLS--------------------------WLTAIGFLLGAVLSAAAGFAGMHVSTRANV 106 (703)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHhhhcccceeeeehhhh
Confidence 999999999999999888776531 589999999999999999999999999999
Q ss_pred HhHHHHhcC-----------------------------------------------------------------------
Q 005640 170 RTTLEARKS----------------------------------------------------------------------- 178 (686)
Q Consensus 170 Rta~aA~~~----------------------------------------------------------------------- 178 (686)
|||+||+++
T Consensus 107 RtAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvGGGI 186 (703)
T COG3808 107 RTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVGGGI 186 (703)
T ss_pred HHHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhcCce
Confidence 999999876
Q ss_pred -----------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhcCCccccchhHHh
Q 005640 179 -----------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYP 247 (686)
Q Consensus 179 -----------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~~~~~~~~~v~~P 247 (686)
|||||+|||||||||||||||||||||||||||+|||||||+++++|+|+|+++.+.+.+.-...++||
T Consensus 187 fTKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ilyP 266 (703)
T COG3808 187 FTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYP 266 (703)
T ss_pred ecchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997643322223468899
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHH
Q 005640 248 LLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLC 327 (686)
Q Consensus 248 L~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~ 327 (686)
|.+++++|++|++|+|||| .+++.++|.+|++|+|.+.+++++++++.++.++..+ ... -....+..+++|.|
T Consensus 267 l~i~a~~i~~Si~gtffVk----~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~--~~~-v~g~~~~~~~lf~~ 339 (703)
T COG3808 267 LAICAVGIITSIIGTFFVK----LGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGT--IGT-VAGMSIGAINLFFC 339 (703)
T ss_pred HHHHHHHHHHHHHhheEEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccc-cccccccchhhHHH
Confidence 9999999999999999975 5678999999999999999999999999999887521 100 01233456789999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005640 328 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAAL 407 (686)
Q Consensus 328 ~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyGiAiAa~ 407 (686)
.++|++++.+|+++||||||++|||||+|||+|.|||+||||+|+++|||||++|.++|.++|+.+|+++||||+|+|++
T Consensus 340 ~~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~AIAa~ 419 (703)
T COG3808 340 GVIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAIAAV 419 (703)
T ss_pred HHHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHHHHHHHHHHhhhc---
Q 005640 408 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAG--- 484 (686)
Q Consensus 408 GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~alaLf~ay~~~~~--- 484 (686)
|||++.+++++.|+|||++||||||+||++||||||++||+||++||||||+|||||||||+|+||+||++|..+..
T Consensus 420 ~ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a 499 (703)
T COG3808 420 GMLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFA 499 (703)
T ss_pred HHHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred -------------CceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHH
Q 005640 485 -------------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCV 551 (686)
Q Consensus 485 -------------~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV 551 (686)
...+|+.||+|++|+++|+++||+||+++|.||||||++|||||||||||+|||||||+||||+|||
T Consensus 500 ~~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~V 579 (703)
T COG3808 500 ANGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCV 579 (703)
T ss_pred hcCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHH
Confidence 1248999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcchhhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCC
Q 005640 552 KISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPK 631 (686)
Q Consensus 552 ~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggK 631 (686)
||+||+|||||+.|++++|++|+++|+++|+++|+|+|+|.+++|+++||+|+|+||||||||||||+|+. +.|+|
T Consensus 580 di~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE~G~~----~~~~K 655 (703)
T COG3808 580 DILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIEDGNG----VGHKK 655 (703)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhhcCCC----cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999863 45789
Q ss_pred CCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005640 632 GSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAT 677 (686)
Q Consensus 632 GS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~~ 677 (686)
|||+|||+|+|||||||||||+|||+|||||+||+|++++.|+|.+
T Consensus 656 Gse~HKAaV~GDTVGDP~KDTaGPalN~lIKi~niVall~~~v~~h 701 (703)
T COG3808 656 GSEAHKAAVTGDTVGDPYKDTAGPALNPLIKIMNIVALLLLAVFAH 701 (703)
T ss_pred ccccccccccCCCCCCcccccCCccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999976
No 7
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=70.02 E-value=39 Score=40.69 Aligned_cols=403 Identities=20% Similarity=0.214 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhHHhHHHHhcC-cCccccCCCCCCCCC-ccccccccCCccccccccCccchh
Q 005640 140 AFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS-VGKVERNIPEDDPRN-PAVIADNVGDNVGDIAGMGSDLFG 217 (686)
Q Consensus 140 ~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvRta~aA~~~-VGKVEagIPEDDPRN-PavIADnVGDNVGD~AGmgADlFE 217 (686)
.....+|-+|+-+.++=.-+|.=+=||+-==-|.---|= .|==| .=| ..|-= ..-+.|||||++|=.|-.==-..+
T Consensus 156 ~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPE-DDP-RNPAvIADnVGDNVGD~AGmgADLFESy~~ 233 (682)
T PF03030_consen 156 PEALSGFGFGASSIALFARVGGGIYTKAADVGADLVGKVEAGIPE-DDP-RNPAVIADNVGDNVGDVAGMGADLFESYVV 233 (682)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---T-T-T-T-TTHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHcCceehhHHHHhhHHHHHHhhCCCC-CCc-ccchHHHHHHHhhhhhhhcchhHHHHHHHH
Confidence 457789999999999999999999888754344333211 11111 112 22221 123678999999976655444456
Q ss_pred hhHHHHHHHHHHHHHhhcCCc-cccchh--HHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHH
Q 005640 218 SYAESSCAALVVASISSFGIN-HEFTSM--LYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTV 294 (686)
Q Consensus 218 Sy~~~~~aamvL~~~~~~~~~-~~~~~v--~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i 294 (686)
|.+++++=+..+......... -..+.+ .+=++.+.+|++..-.. +........+...+.+.....++.+...+
T Consensus 234 sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii~Siig~~~v~~~----~~~~~~~~~~aL~~g~~vs~~l~~i~~~~ 309 (682)
T PF03030_consen 234 SIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGIIASIIGIFFVRTK----KGATSKDPMKALRRGYIVSSILSIILFFF 309 (682)
T ss_dssp HHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHHHHHHHHHHHHTT-------SGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHheeEEEec----CCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666664444332221100000 000111 13334443333222211 11111122233446666667777777666
Q ss_pred HHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcc-cCchhHHHHHhh
Q 005640 295 GIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCR-TGAATNVIFGLA 373 (686)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~-tG~AtnIi~Gla 373 (686)
..+.+......+. ...+ ...+|....-.+.|.+.+.+--+.|.|--..-.+ +-+-++.+. |.=-+..-.|+-
T Consensus 310 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~-IA~as~tG~AtnII~Gla~G~~ 382 (682)
T PF03030_consen 310 LTYWLLGFSFFGS-GISW-----WGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVRE-IAEASETGPATNIISGLAVGME 382 (682)
T ss_dssp HHHHHSEETTEEE-EEEH-----HHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHH-HHHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccC-Ccch-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH-HHHHhCcChHHHHHHHHHHHHH
Confidence 6665540000000 0000 0124566667777888888888888865433222 222232221 222222222322
Q ss_pred hhhhhhHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCC---
Q 005640 374 LGYKSVIIPIFAIAVSIFVS-------FSFA----AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMS--- 439 (686)
Q Consensus 374 ~Gm~St~~pvl~i~~ai~~s-------y~l~----GlyGiAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~--- 439 (686)
--..-+..-.+.+-++..++ |.++ |+..++-..+.|=+..++ .|.=|-|+.-++=-.|--+.-
T Consensus 383 St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~GMLst~g~~la~DayGPi---aDNAgGIaEMs~l~~~VR~~td~L 459 (682)
T PF03030_consen 383 STAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAVGMLSTAGIVLAMDAYGPI---ADNAGGIAEMSGLPEEVREITDAL 459 (682)
T ss_dssp CTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTTHHHHHHHHHHHHH---HHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHhhccCcc---cccccchHHHcCCChhhhhhhHHH
Confidence 22223333333333333333 2221 444433333333333333 366666665543222221111
Q ss_pred hHHHHHhh---------------------hhhhc------CcccccccchhhhHHHHHHHHH--HHHHHH----------
Q 005640 440 HRIRERTD---------------------ALDAA------GNTTAAIGKGFAIGSAALVSLA--LFGAFV---------- 480 (686)
Q Consensus 440 ~~VR~~tD---------------------~LDa~------GNTTaAi~KGfAIGSAaL~ala--Lf~ay~---------- 480 (686)
+.+-+.|. -+|.+ ....--+.++.-+-..-+.+.. ||+++.
T Consensus 460 Da~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~ 539 (682)
T PF03030_consen 460 DAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSIQSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGK 539 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111 01222 3333444555444444444433 344432
Q ss_pred --hhhc--------C-c----e-----e--------------------------ecCCchHHHHHHhhhhHHHHHHHHhH
Q 005640 481 --SRAG--------I-T----T-----V--------------------------DVLTPKVFIGLIVGAMLPYWFSAMTM 514 (686)
Q Consensus 481 --~~~~--------~-~----~-----v--------------------------~l~~p~vl~GlliG~mlpflFsal~m 514 (686)
+|++ + + . + -+..|+.+.|+|+|+.+-=++-|+.|
T Consensus 540 mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m 619 (682)
T PF03030_consen 540 MVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILPGLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFM 619 (682)
T ss_dssp HHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 0 0 0 1 13578999999999999999999999
Q ss_pred HHHHHH---HHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHH-HHhhhcchhh
Q 005640 515 KSVGSA---ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDA-SIKEMIPPGA 567 (686)
Q Consensus 515 ~AVg~a---A~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~-AlkeMi~Pgl 567 (686)
.-.|-| |.|.||+ |-..||..|-++.+|-==|-. =+|..--|++
T Consensus 620 ~n~GGAWDNAKKyIE~---------g~~ggKgS~aHkAaVvGDTVGDP~KDTaGPsl 667 (682)
T PF03030_consen 620 ANAGGAWDNAKKYIEQ---------GNLGGKGSEAHKAAVVGDTVGDPFKDTAGPSL 667 (682)
T ss_dssp HHHHHHHHHHHHHHHH-----------SHHTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hccchHHHHHHHHHhc---------cCcCCCCChhhCCcccCCCCCCCccccCcchH
Confidence 999854 6777774 334468788888877433322 2455555544
No 8
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=68.28 E-value=1.4e+02 Score=34.98 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhcccCCcc
Q 005640 332 LWAGLIIGFVTEYYTSNAYS 351 (686)
Q Consensus 332 l~~g~lI~~~TeYyTs~~~~ 351 (686)
+.....+++++|-|++.+-.
T Consensus 258 ~~i~~~~~~~~~~~~~~~~~ 277 (498)
T COG3104 258 ISILIAIIYFAEAFRSPKVF 277 (498)
T ss_pred HHHHHHHHHHHHHhccCccH
Confidence 33566788899999886433
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=61.96 E-value=75 Score=39.24 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhh
Q 005640 377 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 450 (686)
Q Consensus 377 ~St~~pvl~i~~ai~~sy~l~GlyGiA------iAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LD 450 (686)
..+++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++|- +|-=++..-||.|+--|.-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy---------~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDY---------AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777777666666642 233444445555666663 45555555566666566777
Q ss_pred hcCcccccccchhhhHHHHHHHHHHHHHH
Q 005640 451 AAGNTTAAIGKGFAIGSAALVSLALFGAF 479 (686)
Q Consensus 451 a~GNTTaAi~KGfAIGSAaL~alaLf~ay 479 (686)
|+-.+.+-+++. |-.++++..+-|.++
T Consensus 269 Av~~a~~~~g~~--I~~s~lT~~~gf~~l 295 (910)
T TIGR00833 269 AAAEALRGTGKA--ILGSALTVAVAFLAL 295 (910)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 777777776654 434555555545444
No 10
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=60.45 E-value=1.3e+02 Score=35.77 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCh------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q 005640 250 ISSIGILVCLITTLFATDIFEVKAVKEI------------EPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQK 317 (686)
Q Consensus 250 i~a~gii~siig~~~v~~~~~~~~~~~~------------~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~ 317 (686)
.-..|+++-+...+..|...+....++- +.=|+|++-.-.++.++..+.+.|++.
T Consensus 9 ~i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l~------------- 75 (703)
T COG3808 9 AIACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFLL------------- 75 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHh-------------
Confidence 3345666666666665544332222222 234678887777777666666655542
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005640 318 VVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA 397 (686)
Q Consensus 318 ~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~ 397 (686)
.|..-.|.++|-+.+..-|++--+- |. |-=-+.||++++| +=.+|. ++|.-+
T Consensus 76 ---~~~ta~~Fl~GAv~S~~AG~~GM~v-st--rAN~RtAqAAs~~----l~~al~------------------vaf~sG 127 (703)
T COG3808 76 ---SWLTAIGFLLGAVLSAAAGFAGMHV-ST--RANVRTAQAASTG----LGKALD------------------VAFKSG 127 (703)
T ss_pred ---hhHHHHHHHHHHHHHhhhcccceee-ee--hhhhHHHHHHHhh----hhhhhh------------------hhcccC
Confidence 2555567777777777777665543 33 4445677776664 223333 445555
Q ss_pred HHHHHHHHHHHHhhhhhhhheeccccc
Q 005640 398 AMYGIAVAALGMLSTIATGLAIDAYGP 424 (686)
Q Consensus 398 GlyGiAiAa~GMLst~~~~la~DayGP 424 (686)
.+.|..++.+++|....+-+-.-...|
T Consensus 128 aV~Gl~VaGlaLlg~s~~ylv~~~~~g 154 (703)
T COG3808 128 AVMGLSVAGLALLGLSLYYLVLTSVLG 154 (703)
T ss_pred cchhhHHHHHHHHHHHhhhheeecccC
Confidence 667777788888777666555444333
No 11
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=55.08 E-value=1.8e+02 Score=27.10 Aligned_cols=102 Identities=20% Similarity=0.373 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCccccchhHHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Q 005640 218 SYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIA 297 (686)
Q Consensus 218 Sy~~~~~aamvL~~~~~~~~~~~~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~ 297 (686)
+|..+.+..++++....+ .+.+.-.+|..+..+.++++.+|.+..-++ .+ +|-+-.|..+..+...+ .+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~--~~-----~kG~l~G~~~Gl~y~~i-l~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGRK--AG-----SKGWLHGLLVGLLYFLI-LL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--Hc-----cchHHHHHHHHHHHHHH-HH
Confidence 444444444444543322 122345688888888899999999876321 11 24555565554433333 34
Q ss_pred HHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHH
Q 005640 298 IVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLI 337 (686)
Q Consensus 298 ~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~l 337 (686)
.+++...++.+.. .....+...|.+.|.+.|++
T Consensus 83 lis~~~~~~~~~~-------~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFSG-------SSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcchH-------HHHHHHHHHHHHHHHHHhhc
Confidence 4455544331110 11234677888888887753
No 12
>PRK11677 hypothetical protein; Provisional
Probab=52.41 E-value=17 Score=35.42 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCcchhHHH
Q 005640 325 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDV 356 (686)
Q Consensus 325 f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~I 356 (686)
|..+++|+++|++||++.-.||+.+.+--+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~l 34 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQAL 34 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 45777899999999999999988776544444
No 13
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=51.71 E-value=1.3e+02 Score=36.45 Aligned_cols=144 Identities=22% Similarity=0.362 Sum_probs=86.7
Q ss_pred CCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHH-HHhhhcchhhHH
Q 005640 491 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDA-SIKEMIPPGALV 569 (686)
Q Consensus 491 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~-AlkeMi~Pglla 569 (686)
.++++-+.+++|+..-.+=.-.-|+-=-|+-.|.-+.-||- +.+..+++=|+ +.-.|...++-.
T Consensus 53 ~~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~---------------~~~al~vafr~G~vmGl~vvgl~L 117 (666)
T PRK00733 53 LGWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKG---------------LGKALKVAFRGGAVMGLLVVGLGL 117 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC---------------HHHHHHHHhhcccHHHHHHHHHHH
Confidence 34567788999998887777777776666666665555443 33444444332 333444444322
Q ss_pred HHhhHHHHhhhc----hhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhH-------HhhcccccccccCCCCCccccc
Q 005640 570 MLTPLIVGIFFG----VETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARTLGPKGSEPHKA 638 (686)
Q Consensus 570 vl~Pl~vG~~~G----~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKy-------IE~G~~~~~~~~ggKGS~aHkA 638 (686)
.-.-++.-+ +. ..-..-.+.|--+-+=++|+|.--.||=|-+|-.- +|.|-.| -|.+.-
T Consensus 118 lgl~~~~~~-~~~~~~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPE---------DDPRNP 187 (666)
T PRK00733 118 LGVAGLYLV-FGLGANPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPE---------DDPRNP 187 (666)
T ss_pred HHHHHHHHH-HhccccchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCC---------CCCCCc
Confidence 222111111 22 11122233333333457899999999999887642 6776643 346678
Q ss_pred cccccccCCCCCCCCCchhHH
Q 005640 639 AVIGDTIGDPLKDTSGPSLNI 659 (686)
Q Consensus 639 aVvGDTVGDPfKDTaGPSlni 659 (686)
+|+-|-|||=--|-+|+.=+.
T Consensus 188 avIADnVGDNVGD~AGmgADl 208 (666)
T PRK00733 188 AVIADNVGDNVGDCAGMGADL 208 (666)
T ss_pred chHHHhhcccchhhccccchH
Confidence 999999999999999996553
No 14
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=47.57 E-value=2.1e+02 Score=35.15 Aligned_cols=68 Identities=31% Similarity=0.435 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHH-HhhHHhHHH-HhcC--cCcccc----CCCCCCCCCccccccccCCccccccccC
Q 005640 141 FSTVSFLLGAITSVLSGFLGMKIAT-YANARTTLE-ARKS--VGKVER----NIPEDDPRNPAVIADNVGDNVGDIAGMG 212 (686)
Q Consensus 141 ~~a~~Fl~Ga~~S~~aG~iGM~vat-~aNvRta~a-A~~~--VGKVEa----gIPEDDPRNPavIADnVGDNVGD~AGmg 212 (686)
....+|+.|++.|.+ .+|. -+|.--|+- |||- .|..|. |=.-.|+...+||.|.|||--=|-+|+.
T Consensus 662 ~al~GlL~G~~vsGv------~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPs 735 (765)
T PLN02255 662 ETLSGVLAGALVSGV------QIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVIGDTIGDPLKDTSGPS 735 (765)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHhcCcchHHhHHHHHHcCccccccccCCCCcHHhhccccCCCCCCcccccccch
Confidence 345677777776644 3333 355555543 3332 332222 2234577789999999999999999996
Q ss_pred cc
Q 005640 213 SD 214 (686)
Q Consensus 213 AD 214 (686)
=+
T Consensus 736 lN 737 (765)
T PLN02255 736 LN 737 (765)
T ss_pred Hh
Confidence 54
No 15
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=46.82 E-value=1.9e+02 Score=35.18 Aligned_cols=103 Identities=24% Similarity=0.375 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHH
Q 005640 71 VAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGA 150 (686)
Q Consensus 71 ~~~M~eIa~aI~EGA~AFL~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga 150 (686)
.+|+.+|+.. .=.||--....+.++.-+++.++++. ....+++.|+
T Consensus 563 Y~~cV~I~T~-------aAlkeMi~Pgll~i~~Pi~vG~~~G~---------------------------~al~GlL~G~ 608 (697)
T TIGR01104 563 YATCVKISTD-------ASIKEMIPPGLLVMLTPLIVGFLFGV---------------------------ETLSGVLAGV 608 (697)
T ss_pred cHHHHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHhccH---------------------------HHHHHHHHHH
Confidence 5688888642 22345555555555555555544431 3456777787
Q ss_pred HHHHHhhhhhhHHHH-HhhHHhHHH-HhcC--cCcccc----CCCCCCCCCccccccccCCccccccccCcc
Q 005640 151 ITSVLSGFLGMKIAT-YANARTTLE-ARKS--VGKVER----NIPEDDPRNPAVIADNVGDNVGDIAGMGSD 214 (686)
Q Consensus 151 ~~S~~aG~iGM~vat-~aNvRta~a-A~~~--VGKVEa----gIPEDDPRNPavIADnVGDNVGD~AGmgAD 214 (686)
+.|.+ ..|. .+|.--|+- |||- .|. |. |-.--|.+..+|+.|.|||--=|-+|+.=+
T Consensus 609 ~vsG~------~lAi~m~NaGGAWDNAKKyIE~G~-~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPslN 673 (697)
T TIGR01104 609 LVSGV------QIAISASNTGGAWDNAKKYIEAGS-EHARSLGPKGSEAHKAAVIGDTVGDPLKDTSGPSLN 673 (697)
T ss_pred HHHHH------HHHHHHhcCcchHHhHHHHHhcCc-cccccCCCCCcHHhhccccCCCCCCCccccccchHh
Confidence 76644 3443 356655553 3332 331 22 345667899999999999999999999654
No 16
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=46.08 E-value=4.2e+02 Score=28.73 Aligned_cols=102 Identities=23% Similarity=0.429 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccc--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHH
Q 005640 249 LISSIGILVCLITTLFATDIFEVKAVK--EIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 326 (686)
Q Consensus 249 ~i~a~gii~siig~~~v~~~~~~~~~~--~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~ 326 (686)
++...+++.-++|..+... +.++++ +-.+..+|++.. .+++.++..+ |..+|+.+. .+.|..+.
T Consensus 104 ~~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~~--Y~~~~~~~~---------~~~~~~~l 169 (269)
T PF06800_consen 104 IIGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYWI--YSVIPKAFH---------VSGWSAFL 169 (269)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHHH--HHHHHHhcC---------CChhHhHH
Confidence 3444566777888876432 222222 224567777663 4555554433 344454322 23588888
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhh
Q 005640 327 CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGY 376 (686)
Q Consensus 327 ~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm 376 (686)
.=.+|++.+.++-..-+ ++|.++= -..-|+++|+--+.
T Consensus 170 PqaiGm~i~a~i~~~~~------~~~~~~k------~~~~nil~G~~w~i 207 (269)
T PF06800_consen 170 PQAIGMLIGAFIFNLFS------KKPFFEK------KSWKNILTGLIWGI 207 (269)
T ss_pred HHHHHHHHHHHHHhhcc------ccccccc------chHHhhHHHHHHHH
Confidence 99999997665544322 2333321 14689999986443
No 17
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=43.07 E-value=1.2e+02 Score=30.77 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=43.6
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhhchhhHHHH---hhHHHHHHHHH
Q 005640 523 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV---LAGSLVSGVQI 599 (686)
Q Consensus 523 ~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G~~al~Gl---L~G~~vsG~~l 599 (686)
=+-|++|+++|+. .+-++++.++.+.+.++++-+.-. +..+.+.+.=+++|...+-|| |+-.+++|.+.
T Consensus 103 VifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~s 174 (189)
T PF02355_consen 103 VIFDRIREELRAS-------RGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYS 174 (189)
T ss_dssp HHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4679999998763 356788888888888888766533 333444444455676655444 33344456666
Q ss_pred HHHhh
Q 005640 600 AISAS 604 (686)
Q Consensus 600 Ai~ma 604 (686)
++|.+
T Consensus 175 s~~ia 179 (189)
T PF02355_consen 175 SLFIA 179 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=40.74 E-value=69 Score=28.07 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhHHH----HHHhhHHHHHHHHHHHHHHHHHH
Q 005640 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (686)
Q Consensus 71 ~~~M~eIa~aI~EGA~A----FL~rqYk~i~~~~v~~~~~l~~~ 110 (686)
+++|++-|+..+..|.. +..+.||...+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 56666666666666654 55677887777766666655443
No 19
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=40.50 E-value=3e+02 Score=32.80 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhHHH-----HHHhhHHHHHHHHHHHHHHHHHHhhc-ccCcccCCCcccccccccccchhhhhhHHHH
Q 005640 71 VAKCADIQSAISEGATS-----FLFTEYQYVGVFMIAFAILIFVFLGS-VEGFSTKGQACTYDQQKMCKPALATAAFSTV 144 (686)
Q Consensus 71 ~~~M~eIa~aI~EGA~A-----FL~rqYk~i~~~~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 144 (686)
.+|.+||+-.-.-||.. -+.+|+-.+..+..++++++...+.. +...- ...+. ...+....
T Consensus 705 ~~R~rEiai~kalGas~~~I~~~~l~E~~~l~~ig~~lg~~l~~~~~~~l~~~~------------~~~~~-~~~~~~~~ 771 (803)
T TIGR03434 705 AQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARLLASLL------------FGVSP-TDPLTFAA 771 (803)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccCCC-CCHHHHHH
Confidence 57888888887778765 56677777877777777766554321 00000 00000 01123445
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhHH
Q 005640 145 SFLLGAITSVLSGFLGMKIATYANAR 170 (686)
Q Consensus 145 ~Fl~Ga~~S~~aG~iGM~vat~aNvR 170 (686)
++++..+.+.+++++--|-+.|.|..
T Consensus 772 ~~~~~~~i~ll~~~~pa~~a~~~~p~ 797 (803)
T TIGR03434 772 VAALLLAVALLACYLPARRAARVDPM 797 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 56677778888998888888877753
No 20
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=40.19 E-value=1.8e+02 Score=34.43 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccc
Q 005640 379 VIIPIFAIAVSIFVSFSFAAMYGIAVAALGM-LSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 457 (686)
Q Consensus 379 t~~pvl~i~~ai~~sy~l~GlyGiAiAa~GM-Lst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTa 457 (686)
+++|++.+.+++..++.+.+++|+.+--+.+ ...+.+.+++| + +|--++..-||.++--|.-+|+-++.+
T Consensus 220 ~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~lgi~vd-------~--~ihl~~r~~~~~~~g~~~~~ai~~a~~ 290 (719)
T TIGR00921 220 PLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGID-------Y--GIQTLNRYEEERDIGRAKGEAIVTAVR 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHhhhhh-------h--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677777777777777777777754332221 11222334444 3 465555554555555566677777777
Q ss_pred cccchhhhHHHHHHHHHHHHHH
Q 005640 458 AIGKGFAIGSAALVSLALFGAF 479 (686)
Q Consensus 458 Ai~KGfAIGSAaL~alaLf~ay 479 (686)
-+++... .++++..+=|.++
T Consensus 291 ~~g~~i~--~t~~t~~~gf~~l 310 (719)
T TIGR00921 291 RTGRAVL--IALLTTSAGFAAL 310 (719)
T ss_pred hccHHHH--HHHHHHHHHHHHH
Confidence 7777544 3444444444433
No 21
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=38.73 E-value=21 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.4
Q ss_pred HHHhhhhhhhheeccccccccC
Q 005640 407 LGMLSTIATGLAIDAYGPISDN 428 (686)
Q Consensus 407 ~GMLst~~~~la~DayGPIaDN 428 (686)
++||..+...+--|+||||.|-
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999994
No 22
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=37.95 E-value=2.6e+02 Score=29.21 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=36.7
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHh------hHHHHhhhchh---hHHHHhhHHH
Q 005640 523 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLT------PLIVGIFFGVE---TLSGVLAGSL 593 (686)
Q Consensus 523 ~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~------Pl~vG~~~G~~---al~GlL~G~~ 593 (686)
-++|.+||+.|+.+| .+..+++.-+++ |...|-+...++ |++. +|.+ .++=-+++++
T Consensus 170 vv~d~i~e~~~~~~~-------~~~~~a~~~a~~----~~~~~ii~ttltti~~flpl~~---~~g~~~~~~a~~~~~Gl 235 (246)
T TIGR00966 170 VVFDRIRENLRKYTR-------KTFTEVINLSIN----QTLSRTINTSLTTLLAVLALYV---FGGGVIKDFSLALLVGV 235 (246)
T ss_pred EEehHHHHHHhhccC-------CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHH
Confidence 367888888774322 356666665554 444454444333 3322 1222 2444566666
Q ss_pred HHHHHHHHHh
Q 005640 594 VSGVQIAISA 603 (686)
Q Consensus 594 vsG~~lAi~m 603 (686)
+.|.++++|.
T Consensus 236 i~~t~~sl~i 245 (246)
T TIGR00966 236 IVGTYSSIFI 245 (246)
T ss_pred HHHHHHHHHh
Confidence 6777777764
No 23
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=37.43 E-value=1e+02 Score=33.76 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc----C-c-eeecC--CchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 005640 463 FAIGSAALVSLALFGAFVSRAG----I-T-TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNT 534 (686)
Q Consensus 463 fAIGSAaL~alaLf~ay~~~~~----~-~-~v~l~--~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFre 534 (686)
+=-+|+.+.-..+++.+..... . . -.+.. ++....+.++=..+.++||-.-. .++-...|+-|..|+|=.-
T Consensus 202 iifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~~ 280 (346)
T PF00344_consen 202 IIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGDY 280 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCCE
Confidence 3445666666666666654321 1 1 13344 78899999999999999998866 8888899999999999999
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhhc
Q 005640 535 IPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFG 581 (686)
Q Consensus 535 ipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G 581 (686)
|||+..|++..+| --++..+.++=.-+.-++++ ..|.+++...+
T Consensus 281 I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~~ 324 (346)
T PF00344_consen 281 IPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-VLPLIFGLFGG 324 (346)
T ss_dssp SSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSS
T ss_pred eCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHcc
Confidence 9999888655555 22333444444444555554 45677776543
No 24
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=36.11 E-value=3.5e+02 Score=30.06 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHh
Q 005640 285 LIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 358 (686)
Q Consensus 285 ~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~ 358 (686)
..++++++.+.+-++.+++..+...... + ..-+.+..-+++=++.|.++-...+++++...+....+++
T Consensus 132 tsvStll~~f~tPllv~l~~~~~v~~~~-~----~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~ 200 (319)
T COG0385 132 TSVSTLLGPFLTPLLVGLLAGGGVPVDV-G----GMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSV 200 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCch-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Confidence 4466777777777777776653211100 0 0123455566666666777766666766654444444443
No 25
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.89 E-value=2.2e+02 Score=28.14 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhH
Q 005640 90 FTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANA 169 (686)
Q Consensus 90 ~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNv 169 (686)
|.|.|....+.+.+.++-.++.-+..-.+.+.++. -+..=++.+.++..+++|+.+.
T Consensus 2 k~ea~lF~~l~~Ff~~~~~vY~~~t~~~~~~~E~~----------------Gt~aL~ls~~l~~mig~yl~~~------- 58 (137)
T PF12270_consen 2 KVEAKLFYGLAVFFLVVAVVYGFWTKWSGDGGEWV----------------GTVALVLSGGLALMIGFYLRFT------- 58 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc----------------hHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HhHHHHhcCcCccccCCCCCCCCCccccccccCC
Q 005640 170 RTTLEARKSVGKVERNIPEDDPRNPAVIADNVGD 203 (686)
Q Consensus 170 Rta~aA~~~VGKVEagIPEDDPRNPavIADnVGD 203 (686)
+|| +| =-|||||. |=|+|.-|+
T Consensus 59 -----~rr-~~----~rPED~~d--aEI~dgAGe 80 (137)
T PF12270_consen 59 -----ARR-IG----PRPEDRED--AEIADGAGE 80 (137)
T ss_pred -----Hhh-CC----CCCccccc--cccccCCCC
No 26
>COG1422 Predicted membrane protein [Function unknown]
Probab=34.58 E-value=2.4e+02 Score=29.49 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-C-CcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHHHhhH
Q 005640 16 PVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKN-G-FNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEY 93 (686)
Q Consensus 16 ~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~-G-~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL~rqY 93 (686)
+.+.++|+...+.+.+.+-+.|...- ++. . .+++.++ -...+|.+..+|+||.-.-+++==+.+.+.|+
T Consensus 52 V~avi~gl~~~i~~~~liD~ekm~~~--------qk~m~efq~e~~e-A~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 52 VAAVITGLYITILQKLLIDQEKMKEL--------QKMMKEFQKEFRE-AQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566688888877776655443100 000 0 0111111 11123455678999999999999999999999
Q ss_pred HHHHHHHH
Q 005640 94 QYVGVFMI 101 (686)
Q Consensus 94 k~i~~~~v 101 (686)
|-+...++
T Consensus 123 kPM~~~~v 130 (201)
T COG1422 123 KPMLYISV 130 (201)
T ss_pred hhHHHHHH
Confidence 96554433
No 27
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=33.51 E-value=1.5e+02 Score=30.72 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=61.2
Q ss_pred hcCCChHHHHHhhhhhhcCcccccccchhhhH---HHHHHHHHHHHHHHhhhcCceeecCCchHHHHHHhhhhHHHHHHH
Q 005640 435 MAGMSHRIRERTDALDAAGNTTAAIGKGFAIG---SAALVSLALFGAFVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSA 511 (686)
Q Consensus 435 Ms~l~~~VR~~tD~LDa~GNTTaAi~KGfAIG---SAaL~alaLf~ay~~~~~~~~v~l~~p~vl~GlliG~mlpflFsa 511 (686)
|+.||++.|++.... .-=|+.+-..++= +. +-.+..+.||.-++--.+ . +.-...++|+++|..+++++.-
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~llLf~~WllLsg--~--~s~~~l~lG~i~~~~v~~l~~~ 74 (201)
T PRK08382 1 MSRMPFYLRERLEEV-KERVLYEIYEAQK-LPPWERFVLTWLILLAFWVIISG--D--LSPRGLILGALTTLIIASYMRD 74 (201)
T ss_pred CCcchHHHHHHHhhc-ccccceeeccccc-CCcchHHHHHHHHHHHHHHHHhC--C--cCHHHHHHHHHHHHHHHHHHHh
Confidence 788999999998776 1112222222111 11 135556666665543222 1 2234678888888888877766
Q ss_pred HhHH-----------------------------HHHHHHHHHHHHHHHhcccCCCCCCC--CCCCChhhH
Q 005640 512 MTMK-----------------------------SVGSAALKMVEEVRRQFNTIPGLMEG--TTKPDYATC 550 (686)
Q Consensus 512 l~m~-----------------------------AVg~aA~~mV~EVRRQFreipGimeg--~~kPDY~~c 550 (686)
+..+ -+-+|-.+|...|=+ .+-.||+.+= +-|-|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~eivkANi~Va~~VL~-~~i~Pgiv~v~~~l~~~~~~~ 143 (201)
T PRK08382 75 FLTEDIRRSGHLLWKILYFALIYLPQYLIIMAFRLLESNLKVAKHVIF-MDINPGIVKIKTDLHSDTGIT 143 (201)
T ss_pred hcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeccCCChHHHH
Confidence 5321 233555556666655 4566777654 345565554
No 28
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.71 E-value=72 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=23.9
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 005640 495 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLME 540 (686)
Q Consensus 495 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGime 540 (686)
+++++++|+.+-|+++=. ..++|++|+|-|=|
T Consensus 3 iilali~G~~~Gff~ar~--------------~~~k~l~~NPpine 34 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK--------------YMEKQLKENPPINE 34 (64)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHCCCCCH
Confidence 678888998888887543 45688999887633
No 29
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=31.37 E-value=2.6e+02 Score=28.60 Aligned_cols=84 Identities=26% Similarity=0.419 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----
Q 005640 321 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF---- 396 (686)
Q Consensus 321 ~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l---- 396 (686)
|..+|.=.++|.+.+++..+.. .+++....|.+ -.|++.|...+..-+++.+++++.+|..
T Consensus 19 wi~FW~QlvLgvVs~~iL~F~~-~~~~~~~~~~~--------------~~G~~~gl~~a~~gl~~l~~si~~~fry~Rla 83 (183)
T PF12263_consen 19 WIGFWIQLVLGVVSAVILLFAN-LFSGRATSPNR--------------NPGLGIGLFLAICGLVALFFSIFWSFRYTRLA 83 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccccCCCCCc--------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888877776653 34443333322 2577889999999999999999998842
Q ss_pred --------------------------HHHHHHHHHHHHHhhhhhhhhee
Q 005640 397 --------------------------AAMYGIAVAALGMLSTIATGLAI 419 (686)
Q Consensus 397 --------------------------~GlyGiAiAa~GMLst~~~~la~ 419 (686)
..+-|..++-+|+-++.|.-++=
T Consensus 84 r~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak 132 (183)
T PF12263_consen 84 RRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAK 132 (183)
T ss_pred HHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26889999999999999987753
No 30
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=30.53 E-value=21 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=15.7
Q ss_pred hhhhHHHHHhhHHhHHHHhcCcCccccCCCCCCCCCccc
Q 005640 158 FLGMKIATYANARTTLEARKSVGKVERNIPEDDPRNPAV 196 (686)
Q Consensus 158 ~iGM~vat~aNvRta~aA~~~VGKVEagIPEDDPRNPav 196 (686)
|.|+.=+..+-++|.+-. .|||||-.
T Consensus 21 ~ygv~k~~~a~~ns~E~~-------------NDPRNP~~ 46 (54)
T PF04911_consen 21 YYGVNKAQNAMMNSDEFK-------------NDPRNPRA 46 (54)
T ss_pred HHHHHHHHHHHhcCHHHh-------------cCCCChhh
Confidence 455555555555554442 69999953
No 31
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=30.47 E-value=3.4e+02 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhHHhHHHHh
Q 005640 141 FSTVSFLLGAITSVLSGFLGMKIATYANARTTLEAR 176 (686)
Q Consensus 141 ~~a~~Fl~Ga~~S~~aG~iGM~vat~aNvRta~aA~ 176 (686)
.+++...+.++++.+....+.+=-=..+-.|++.-+
T Consensus 54 ~~~~l~~~~~~~~~~~~~~~~~~~W~~~r~tae~lk 89 (112)
T PF14015_consen 54 VAAILSALAAILASLAAFFRFHERWIRYRATAESLK 89 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 344333444555555555554444344444444443
No 32
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=30.43 E-value=3.4e+02 Score=30.65 Aligned_cols=21 Identities=33% Similarity=0.622 Sum_probs=13.9
Q ss_pred eecCCchHHHHHHhhhhHHHH
Q 005640 488 VDVLTPKVFIGLIVGAMLPYW 508 (686)
Q Consensus 488 v~l~~p~vl~GlliG~mlpfl 508 (686)
--+.-|..++|..+|..+=-+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~ 339 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRS 339 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 345678888888777665433
No 33
>PRK09776 putative diguanylate cyclase; Provisional
Probab=30.30 E-value=1e+03 Score=29.23 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 005640 247 PLLISSIGILVCLITTLFATD 267 (686)
Q Consensus 247 PL~i~a~gii~siig~~~v~~ 267 (686)
.+++....++...++.+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~ 91 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRK 91 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555656666666544
No 34
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.04 E-value=62 Score=30.90 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccc
Q 005640 322 WQLFLCVAVGLWAGLIIGFVTEYYTS 347 (686)
Q Consensus 322 ~~~f~~~~~Gl~~g~lI~~~TeYyTs 347 (686)
+.+..=.+.|+++|+.|||++++|-.
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555556666666666666666643
No 35
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=28.53 E-value=54 Score=35.72 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q 005640 513 TMKSVGSAALKMVEEVRRQFNTI 535 (686)
Q Consensus 513 ~m~AVg~aA~~mV~EVRRQFrei 535 (686)
.|.+|.+++..-++|+++|||..
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~ 44 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNR 44 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999975
No 36
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=1.9e+02 Score=27.89 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhHHHH------HHhhHH
Q 005640 71 VAKCADIQSAISEGATSF------LFTEYQ 94 (686)
Q Consensus 71 ~~~M~eIa~aI~EGA~AF------L~rqYk 94 (686)
...+++=|+..++||..| |+|+|-
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999998 666663
No 37
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=27.98 E-value=6.6e+02 Score=28.31 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 005640 516 SVGSAALKMVEEVRRQFN 533 (686)
Q Consensus 516 AVg~aA~~mV~EVRRQFr 533 (686)
.=||-.-++++|+|.-+.
T Consensus 211 ~RGRRGLdILn~iqk~~~ 228 (356)
T COG4956 211 NRGRRGLDILNEIQKEDP 228 (356)
T ss_pred hcccchhHHHHHHHhhCC
Confidence 346777899999988774
No 38
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=27.63 E-value=9.9e+02 Score=27.54 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 005640 139 AAFSTVSFLLGAITSVLSG 157 (686)
Q Consensus 139 ~~~~a~~Fl~Ga~~S~~aG 157 (686)
.+..+..|+++++.|...|
T Consensus 103 ~~~~~~~Fl~~~~~s~~~G 121 (454)
T TIGR00931 103 EWFAVSTLLICMIVSSFTG 121 (454)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3578899999999998776
No 39
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=27.61 E-value=26 Score=42.29 Aligned_cols=15 Identities=60% Similarity=0.922 Sum_probs=13.5
Q ss_pred CCCCCCCCccccccc
Q 005640 186 IPEDDPRNPAVIADN 200 (686)
Q Consensus 186 IPEDDPRNPavIADn 200 (686)
|-+|||||||=||..
T Consensus 795 I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 795 IMDHDPRNPAYIATQ 809 (1004)
T ss_pred cccCCCCccceeecc
Confidence 778999999999875
No 40
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=27.54 E-value=51 Score=34.95 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=44.3
Q ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHH
Q 005640 496 FIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 570 (686)
Q Consensus 496 l~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllav 570 (686)
+.|.++|- +|+++.-+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.+=..
T Consensus 123 l~GMiiGN---------sM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~insm 186 (248)
T TIGR00245 123 LMGMVIGN---------TMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPTVNST 186 (248)
T ss_pred HHHHHHhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhchHHhc
Confidence 45666665 689999999999999999977766554432333 34455556777777777765544
No 41
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=27.23 E-value=3.3e+02 Score=30.89 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=53.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHhhhhhhhhc-cccChH----HHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q 005640 243 SMLYPLLISSIGILVCLITTLFATDIFEVK-AVKEIE----PSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQK 317 (686)
Q Consensus 243 ~v~~PL~i~a~gii~siig~~~v~~~~~~~-~~~~~~----~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~ 317 (686)
.++.|+++..-|=..+...+..+|...... +.++.. |-+..|+..+.++..+... .++++.. .+.+ |
T Consensus 316 ~~~iP~i~~~~Gn~G~qs~~~~~r~l~~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~-~~~~~~~-~~~~---~--- 387 (449)
T TIGR00400 316 ANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKDFFKVILREICVSILVGAILASVNFL-RIVFFQG-KLLI---A--- 387 (449)
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC-CchH---H---
Confidence 467899999888888887777776542111 122333 4444444444444444333 3333211 1111 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 005640 318 VVKNWQLFLCVAVGLWAGLIIGFVTEYY 345 (686)
Q Consensus 318 ~~~~~~~f~~~~~Gl~~g~lI~~~TeYy 345 (686)
.......+.+++++.+.|.+++++...+
T Consensus 388 ~~v~~~~~~~~~~~~~~G~~lp~~~~k~ 415 (449)
T TIGR00400 388 FVVSSSLFVSLTVAKILGGLLPIVAKLL 415 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0112346778888888889998888775
No 42
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=27.22 E-value=1.7e+02 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=14.4
Q ss_pred hHHHHHHHHH-HHH-HHHHHHHHHHHHh
Q 005640 277 IEPSLKKQLI-IST-VLMTVGIAIVSWI 302 (686)
Q Consensus 277 ~~~aL~~g~~-~s~-il~~i~~~~~~~~ 302 (686)
..+.+++++. +-+ +++++..++..|+
T Consensus 71 ~~k~~~~qls~v~Nilvsv~~~~~~~~~ 98 (142)
T PF11712_consen 71 ELKSVKRQLSTVFNILVSVFAVFFAGWY 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788754 333 4445555555553
No 43
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.18 E-value=61 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHH-HHHHHHHh------hhhcccCCcchhHHH
Q 005640 321 NWQLFLCVAVGLW-AGLIIGFV------TEYYTSNAYSPVQDV 356 (686)
Q Consensus 321 ~~~~f~~~~~Gl~-~g~lI~~~------TeYyTs~~~~PVr~I 356 (686)
.|.+..+++++.+ .++||.+. -+|+.||+++|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 4666666655544 77777654 579999999999876
No 44
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=27.11 E-value=59 Score=34.51 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHH
Q 005640 496 FIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 570 (686)
Q Consensus 496 l~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllav 570 (686)
+.|.++|. +|++++.+..+.-+|+|++=+|+...+.--+. +++..+-..|.|+|+-+.|.+=..
T Consensus 129 i~GMiiGN---------sm~a~slal~r~~~~l~~~~~~ie~~LalGat--~~eA~~~~~r~ai~~al~P~i~~m 192 (250)
T PF03649_consen 129 IAGMIIGN---------SMNAVSLALERFYSELRERRDEIEALLALGAT--PREAVRPFIRRAIRAALIPTINSM 192 (250)
T ss_pred HHHHHHhh---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHhHhHHHhh
Confidence 45777765 68999999999999999997776555443233 334555556777787777766544
No 45
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=26.74 E-value=5.3e+02 Score=29.09 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccC
Q 005640 323 QLFLCVAVGLWAGLIIGFVTEYYTSN 348 (686)
Q Consensus 323 ~~f~~~~~Gl~~g~lI~~~TeYyTs~ 348 (686)
.+..+...|+..-.+.....++|.+.
T Consensus 323 ~~l~~y~~~l~~~~l~~ll~r~fya~ 348 (451)
T PF03023_consen 323 SALRIYALGLPFYALNDLLSRVFYAL 348 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 45566777777777777777777654
No 46
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.67 E-value=1.4e+02 Score=29.48 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=15.8
Q ss_pred HHHHHHhcccCCCCCCCCCCCChhhHHHH
Q 005640 525 VEEVRRQFNTIPGLMEGTTKPDYATCVKI 553 (686)
Q Consensus 525 V~EVRRQFreipGimeg~~kPDY~~cV~I 553 (686)
.||.++|++||. +++|.|.+-..+
T Consensus 84 ~~ea~~~L~~I~-----~~~~~y~~~~~~ 107 (193)
T PF06738_consen 84 LEEAIERLDEID-----REPPRYPPWLVI 107 (193)
T ss_pred HHHHHHHHHHHh-----hCCCCCCHHHHH
Confidence 567788888774 445577765544
No 47
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=26.67 E-value=3.9e+02 Score=28.81 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=39.2
Q ss_pred HHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhhchhh---HHHHhhHHHHHHHHHH
Q 005640 524 MVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVET---LSGVLAGSLVSGVQIA 600 (686)
Q Consensus 524 mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G~~a---l~GlL~G~~vsG~~lA 600 (686)
+.+.+|++.|+.|+ .|++++++-+.+..++..+.=.+..++.=+..- ++|.+. ++=.+++.+++|.+.+
T Consensus 200 v~drire~~~~~~~-------~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~-~~g~~~i~~fa~~l~~Gli~~~~~s 271 (289)
T PRK13022 200 VFDRIRENFRKIRR-------KTFAEIINLSINQTLSRTIITSLTTLLVVLALY-LFGGGTLHDFALALLIGIIVGTYSS 271 (289)
T ss_pred EeeHHHHHHhhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHH
Confidence 46788888765432 467888877666555554443333322211111 234332 3333455556666666
Q ss_pred HHhhcc
Q 005640 601 ISASNT 606 (686)
Q Consensus 601 i~maNa 606 (686)
++.+-.
T Consensus 272 l~i~p~ 277 (289)
T PRK13022 272 IFVASP 277 (289)
T ss_pred HHHHHH
Confidence 665544
No 48
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=80 Score=30.97 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCcch
Q 005640 323 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSP 352 (686)
Q Consensus 323 ~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~P 352 (686)
-.|....+|+++|++||++.--+|-.++|.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 356788899999999999998888877776
No 49
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=25.61 E-value=2.3e+02 Score=28.45 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHH-----------------------HhhHHhHHHHhcCcCccccCCCCCCCCCcccc
Q 005640 141 FSTVSFLLGAITSVLSGFLGMKIAT-----------------------YANARTTLEARKSVGKVERNIPEDDPRNPAVI 197 (686)
Q Consensus 141 ~~a~~Fl~Ga~~S~~aG~iGM~vat-----------------------~aNvRta~aA~~~VGKVEagIPEDDPRNPavI 197 (686)
++...|++|.+.+.+..++..+.-+ +||+.+|.-..+ | +.|.||+..
T Consensus 22 ~s~~~~i~G~ivg~iv~~~~~~~~~~~~~~~r~~~~i~~~~~~~~ei~~ani~Va~~vl~---------p-~~~i~Pgiv 91 (158)
T COG1863 22 FSPANLILGFIVGAIVLLLLRRFLPARLYPRRLLRAIKLILVFLKELIKANIDVAKIVLR---------P-KRPINPGIV 91 (158)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------C-CCCCCCcEE
Confidence 4667788888888888888777665 556666655543 2 378999987
Q ss_pred c
Q 005640 198 A 198 (686)
Q Consensus 198 A 198 (686)
+
T Consensus 92 ~ 92 (158)
T COG1863 92 A 92 (158)
T ss_pred E
Confidence 5
No 50
>PRK01844 hypothetical protein; Provisional
Probab=25.56 E-value=1e+02 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=23.6
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 005640 495 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLME 540 (686)
Q Consensus 495 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGime 540 (686)
+++++++|+..-|+++= ...++|+||+|-|=|
T Consensus 10 ~I~~li~G~~~Gff~ar--------------k~~~k~lk~NPpine 41 (72)
T PRK01844 10 GVVALVAGVALGFFIAR--------------KYMMNYLQKNPPINE 41 (72)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCCH
Confidence 46778888888887753 345689999998744
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.26 E-value=3.2e+02 Score=29.04 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCcc
Q 005640 325 FLCVAVGLWAGLIIGFVTEYYTSNAYS 351 (686)
Q Consensus 325 f~~~~~Gl~~g~lI~~~TeYyTs~~~~ 351 (686)
++|+.+|++.|++|..+-.|-.|+..+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~ 72 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRK 72 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999887765443
No 52
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.48 E-value=70 Score=30.51 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCCcc
Q 005640 328 VAVGLWAGLIIGFVTEYYTSNAYS 351 (686)
Q Consensus 328 ~~~Gl~~g~lI~~~TeYyTs~~~~ 351 (686)
+++|+++|++||++.-.+++.+.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchh
Confidence 467788888888888888776644
No 53
>smart00097 WNT1 found in Wnt-1.
Probab=23.96 E-value=69 Score=35.00 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q 005640 513 TMKSVGSAALKMVEEVRRQFNTI 535 (686)
Q Consensus 513 ~m~AVg~aA~~mV~EVRRQFrei 535 (686)
.|.+|.+++..-++|+++|||..
T Consensus 19 ~~~~v~~g~~~ai~ECq~QF~~~ 41 (305)
T smart00097 19 VMISVAEGAQEGIEECQHQFRFR 41 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 47799999999999999999975
No 54
>PRK00523 hypothetical protein; Provisional
Probab=23.81 E-value=1.2e+02 Score=26.99 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 005640 495 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 563 (686)
Q Consensus 495 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi 563 (686)
+++++++|+..-|+++=-.|+ +|++|+|-| +...+|+|.
T Consensus 11 ~i~~li~G~~~Gffiark~~~--------------k~l~~NPpi----------------ne~mir~M~ 49 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFK--------------KQIRENPPI----------------TENMIRAMY 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCcCC----------------CHHHHHHHH
No 55
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=23.77 E-value=2.2e+02 Score=33.07 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=52.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHH
Q 005640 504 MLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 577 (686)
Q Consensus 504 mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG 577 (686)
.+-|+|+.+.++.=|-.+.++-|..|+|=..|||+.+| ||--+.+-+..++.++-.-+.-++++++ |-++|
T Consensus 371 ~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpG--k~t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 371 FSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDS--SSMVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34567777777766778889999999999999999888 4444456667777777777777777754 44454
No 56
>COG2056 Predicted permease [General function prediction only]
Probab=23.68 E-value=6.1e+02 Score=29.22 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHHhh
Q 005640 72 AKCADIQSAISEGATSFLFTEYQ--YVGVFMIAFAILIFVFLG 112 (686)
Q Consensus 72 ~~M~eIa~aI~EGA~AFL~rqYk--~i~~~~v~~~~~l~~~~~ 112 (686)
.++++++-+.-...-+|.-|-|. --.++..+.++++++..+
T Consensus 237 ~~~~~~~~alvaiv~af~vQl~~~~~smilgal~gliv~~~~g 279 (444)
T COG2056 237 LEEYKLALALVAIVVAFAVQLLTFTDSMILGALAGLIVFFLSG 279 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 34478888877777888887743 345666666666655443
No 57
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=23.68 E-value=1.4e+02 Score=31.67 Aligned_cols=129 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhc
Q 005640 379 VIIPIFAIAVSIFVSFSF----AAMYGIAV--AALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAA 452 (686)
Q Consensus 379 t~~pvl~i~~ai~~sy~l----~GlyGiAi--Aa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~ 452 (686)
.++|++.+.++++.++.+ .+..|+.+ .+..++..+.+.+++|- +|-=+...-||.++-.+.-+++
T Consensus 170 ~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy---------~i~l~~r~ree~~~g~~~~~ai 240 (333)
T PF03176_consen 170 ALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDY---------SIHLINRYREELRRGMSRKEAI 240 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhh---------HHHHHHHHHHHHHhccchHHHH
Q ss_pred CcccccccchhhhHHHHHHHHHHHHHHHhhhcCceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHH
Q 005640 453 GNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGS 519 (686)
Q Consensus 453 GNTTaAi~KGfAIGSAaL~alaLf~ay~~~~~~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~ 519 (686)
-++.+-+++ +|-.++++-.+-|.+++-. ++..+.-.=-...+|+++...+-..+-=..+.-.+|
T Consensus 241 ~~a~~~~g~--~i~~s~ltt~~gf~~L~~s-~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~ 304 (333)
T PF03176_consen 241 RRAVRSTGR--AILLSALTTAIGFGSLLFS-PFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGR 304 (333)
T ss_pred HHHHhccCc--hhHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
No 58
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=23.65 E-value=92 Score=34.12 Aligned_cols=48 Identities=31% Similarity=0.353 Sum_probs=35.2
Q ss_pred hHHHHHhhhhhhcC-cccccccchhhhHHHHHHHHH--HHHHHHhhhcCcee
Q 005640 440 HRIRERTDALDAAG-NTTAAIGKGFAIGSAALVSLA--LFGAFVSRAGITTV 488 (686)
Q Consensus 440 ~~VR~~tD~LDa~G-NTTaAi~KGfAIGSAaL~ala--Lf~ay~~~~~~~~v 488 (686)
+-+||=.++-.+.| |+++-..+=|+| ||++++++ |++.|...+.-+.+
T Consensus 187 ~AiRedE~~a~alG~n~~~~Kl~aF~i-sa~~AGiAGaL~a~~~~~v~p~~f 237 (314)
T COG4177 187 RAIREDEIAARALGINVTRYKLLAFVI-SAAIAGIAGALYALYLGFVSPESF 237 (314)
T ss_pred hhhccCHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhceeChhhc
Confidence 45677677777788 777888899998 57777774 88888776554443
No 59
>PRK01844 hypothetical protein; Provisional
Probab=22.60 E-value=2.1e+02 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 005640 12 EILVPVCAVVGIIFSLVQWFIVSR 35 (686)
Q Consensus 12 ~~~~~~~~~lgl~fa~~~~~~V~~ 35 (686)
..+++++-++|++-++|.++...+
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666677777777664433
No 60
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.49 E-value=1.4e+03 Score=27.34 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=51.7
Q ss_pred hhHHhHHHH------HHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc----
Q 005640 243 SMLYPLLIS------SIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYN---- 312 (686)
Q Consensus 243 ~v~~PL~i~------a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~---- 312 (686)
.+.||++++ +-|++-.++|.++.++. ++..+..+.+.+-+...++-+++.-++..-+|-........
T Consensus 351 ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~---~k~~~~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~ 427 (646)
T PRK05771 351 AIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKL---KKKSEGLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYL 427 (646)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccc
Confidence 466888775 34788888888775432 11122344454545555555555444444443221100000
Q ss_pred -------cccccccchhHHHHHHHHHHH---HHHHHHHhhhhc
Q 005640 313 -------FGAQKVVKNWQLFLCVAVGLW---AGLIIGFVTEYY 345 (686)
Q Consensus 313 -------~g~~~~~~~~~~f~~~~~Gl~---~g~lI~~~TeYy 345 (686)
+-.........+.+|+++|++ .|.+++.+..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~l~lsl~iGvi~i~~g~~l~~~~~~~ 470 (646)
T PRK05771 428 ELPEGYPSLSTENDVMTILIISLLIGVIHLFLGLLLGFINNVR 470 (646)
T ss_pred cccCCccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001112346789999976 777777777765
No 61
>COG1288 Predicted membrane protein [Function unknown]
Probab=22.43 E-value=3.6e+02 Score=31.52 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005640 78 QSAISEGATSFLFTEYQYVGVFMIAFAILIFVF 110 (686)
Q Consensus 78 a~aI~EGA~AFL~rqYk~i~~~~v~~~~~l~~~ 110 (686)
.+.-+++.+.|=.|+--.+.+|..-+...++-.
T Consensus 261 f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~GV 293 (481)
T COG1288 261 FKVEDSGERPFTFRDKLVLLLFTLTFVIMIWGV 293 (481)
T ss_pred hhhccccccccchhhhHHHHHHHHHHHHHHHHh
Confidence 333344566788888888888777666666543
No 62
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=22.34 E-value=1.3e+03 Score=27.22 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 005640 324 LFLCVAVGLWAGLIIGFVTEYYT 346 (686)
Q Consensus 324 ~f~~~~~Gl~~g~lI~~~TeYyT 346 (686)
.....++|+.+-..|-++.+|+.
T Consensus 251 ~~~~l~lgi~vd~~ihl~~r~~~ 273 (719)
T TIGR00921 251 LAVPMLIGVGIDYGIQTLNRYEE 273 (719)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHH
Confidence 45567788888888888888874
No 63
>PRK10720 uracil transporter; Provisional
Probab=21.16 E-value=1.2e+03 Score=26.38 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005640 327 CVAVGLWAGLIIGFVTEY 344 (686)
Q Consensus 327 ~~~~Gl~~g~lI~~~TeY 344 (686)
++++|+++|.++.+...+
T Consensus 183 ~iLigIvvG~ila~~lG~ 200 (428)
T PRK10720 183 PILIGVLVGYALSFAMGM 200 (428)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 578888888888887765
No 64
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=21.04 E-value=6.9e+02 Score=30.01 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=49.4
Q ss_pred ccccccccCcchhHHhcCCChH-HHHHhhhhhhcCcccccccch-hhhHHHHHHHHHHHHHHHhhhcCceeecCCchHHH
Q 005640 420 DAYGPISDNAGGIAEMAGMSHR-IRERTDALDAAGNTTAAIGKG-FAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFI 497 (686)
Q Consensus 420 DayGPIaDNAgGIaEMs~l~~~-VR~~tD~LDa~GNTTaAi~KG-fAIGSAaL~alaLf~ay~~~~~~~~v~l~~p~vl~ 497 (686)
+...||.|+ |-|. |-++ -.-+|+.|+..|= -+...|= =.|=-+.++|+++.++ .+.+
T Consensus 368 eam~PiMe~---VvkP--Lme~is~~iT~~L~~~GV-dke~Ae~iGsI~gaI~aAi~mvA~---------------~v~~ 426 (593)
T PRK15374 368 QALNPIMEH---VLKP--LMELIGKAITKALEGLGV-DKKTAEMAGSIVGAIVAAIAMVAV---------------IVVV 426 (593)
T ss_pred HHHHHHHHH---HHHH--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 366777774 2221 0011 1457888888883 2222221 1133345555555543 2455
Q ss_pred HHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 005640 498 GLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQF 532 (686)
Q Consensus 498 GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQF 532 (686)
|...++.--.+++. .++.+|+.-.+++++.-||+
T Consensus 427 ~~v~k~aa~Kl~~~-l~k~ig~~i~~~~~~~lk~~ 460 (593)
T PRK15374 427 AVVGKGAAAKLGNA-LSKMMGETIKKLVPNVLKQL 460 (593)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55554444455544 46788888888888887766
No 65
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=20.99 E-value=2.1e+02 Score=23.47 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005640 5 LLSELATEILVPVCAVVGIIFSLVQWFIVSR 35 (686)
Q Consensus 5 ~~s~~~~~~~~~~~~~lgl~fa~~~~~~V~~ 35 (686)
-+|+..+....+...+|+++.+..-|+|++|
T Consensus 14 ai~~a~t~i~~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 14 AISAAKTDIATIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777788899999999999999988
Done!