Query 005640
Match_columns 686
No_of_seqs 144 out of 731
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a01_A Proton pyrophosphatase; 100.0 2E-243 7E-248 2004.8 48.5 686 1-686 1-766 (766)
2 4av3_A K(+)-stimulated pyropho 100.0 3E-226 1E-230 1883.8 42.3 602 10-678 11-732 (735)
3 4av3_A K(+)-stimulated pyropho 45.8 2E+02 0.0067 33.8 13.5 79 322-423 83-161 (735)
4 4f0a_B Protein WNT-8, XWNT-8; 35.0 23 0.00078 37.3 3.4 23 513-535 18-40 (316)
5 2dae_A KIAA0733 protein; mitog 34.2 34 0.0012 29.2 3.6 39 522-560 11-53 (75)
6 3hd7_A Vesicle-associated memb 28.1 93 0.0032 26.8 5.6 40 71-110 42-85 (91)
7 2keb_A DNA polymerase subunit 18.6 12 0.00041 33.6 -2.0 50 502-560 11-60 (101)
8 3fss_A Histone chaperone RTT10 18.0 81 0.0028 32.2 3.6 32 526-559 99-130 (237)
9 2o1k_A NS28, non-structural gl 15.7 68 0.0023 25.6 1.8 17 519-535 3-19 (52)
10 2kog_A Vesicle-associated memb 15.2 39 0.0013 30.7 0.5 37 73-109 72-112 (119)
No 1
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=2.1e-243 Score=2004.79 Aligned_cols=686 Identities=89% Similarity=1.341 Sum_probs=627.0
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHH
Q 005640 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSA 80 (686)
Q Consensus 1 ~~~~~~s~~~~~~~~~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~a 80 (686)
||.+++||..++.++++++++|++||+|+|++|+|+|+++++..|.+.+++||.+|+|.+|++|.++|++.+||||||++
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~eIa~a 80 (766)
T 4a01_A 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEEGINDHNVVVKCAEIQNA 80 (766)
T ss_dssp -CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC-------------------------CCHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCccccccccccCCcccccchhhcccchHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999876544455567889999999999998889999999999999
Q ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 005640 81 ISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLG 160 (686)
Q Consensus 81 I~EGA~AFL~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iG 160 (686)
|||||++||+||||++++|+++++++|++++++..++++++|++.+++.++|.+.+..+++++++|++|++||+++||+|
T Consensus 81 I~eGA~afL~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iG 160 (766)
T 4a01_A 81 ISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLG 160 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887666777888899888888899998889999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHhcC--------------------------------------------------------------
Q 005640 161 MKIATYANARTTLEARKS-------------------------------------------------------------- 178 (686)
Q Consensus 161 M~vat~aNvRta~aA~~~-------------------------------------------------------------- 178 (686)
||+|||||+|||+|||+|
T Consensus 161 M~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlF 240 (766)
T 4a01_A 161 MKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240 (766)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHhhcchhHHHHHHH
Confidence 999999999999999987
Q ss_pred ------------------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhhcCCccc
Q 005640 179 ------------------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHE 240 (686)
Q Consensus 179 ------------------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~~~~~~~ 240 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++|||+|+....+..+..
T Consensus 241 aRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~~~~~ 320 (766)
T 4a01_A 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNHE 320 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTTC
T ss_pred HHhccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999998542221234
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccc
Q 005640 241 FTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVK 320 (686)
Q Consensus 241 ~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~ 320 (686)
+..++|||+++++||++|++|++++|..++.++++|+|++||+|+|+|++++++++|++++|++|+.+.....++.....
T Consensus 321 ~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 400 (766)
T 4a01_A 321 LTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVK 400 (766)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccch
Confidence 56799999999999999999999998777777789999999999999999999999999999998765543223333446
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005640 321 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMY 400 (686)
Q Consensus 321 ~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~Gly 400 (686)
+|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||++|+++|++++++||+++|+|
T Consensus 401 ~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~sy~l~gly 480 (766)
T 4a01_A 401 SWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMY 480 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCcccccccchhhhHHHHHHHHHHHHHHH
Q 005640 401 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV 480 (686)
Q Consensus 401 GiAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~alaLf~ay~ 480 (686)
|+|+||+|||||++++|++|+||||+||||||||||+||||||||||+||++||||||+|||||||||+|+||+||++|+
T Consensus 481 GiAlAa~GMLst~g~~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTaAi~KGfAIGSAaL~AlaLf~ay~ 560 (766)
T 4a01_A 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV 560 (766)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhheeeeeccCCcccCcccHHHHccCcHHHHHHHHhhhhccCchhhhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHh
Q 005640 481 SRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIK 560 (686)
Q Consensus 481 ~~~~~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~Alk 560 (686)
+++++..+|+.||+|++|+|+|+|+|||||+++|+||||||++||||||||||||||||||++||||+||||||||+|||
T Consensus 561 ~~~~~~~~~l~~P~Vl~GlliG~mlpflFsa~tm~AVg~AA~~mV~EVRRQFreipGImeg~~kPDY~rcV~I~T~aAlk 640 (766)
T 4a01_A 561 SRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIK 640 (766)
T ss_dssp HHTTCSCCBSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHhccceeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCccccccc
Q 005640 561 EMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAV 640 (686)
Q Consensus 561 eMi~Pgllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaV 640 (686)
|||+|+++++++|+++|++||+++++|||+|++++|++||+||+|+||||||||||||+|..+++++|||||||+|||||
T Consensus 641 eMi~Pgllav~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGSeaHkAaV 720 (766)
T 4a01_A 641 EMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDCHKAAV 720 (766)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHTTCSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhHHHHHHccccccccccCCCCchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999965555568999999999999
Q ss_pred cccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 005640 641 IGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 686 (686)
Q Consensus 641 vGDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~~~~~~~~~~~ 686 (686)
||||||||||||||||||||||||++|||||+|+|..++|++++++
T Consensus 721 vGDTVGDPfKDTsGPslNiLIKlm~ivsLv~ap~~~~~~g~~~~~~ 766 (766)
T 4a01_A 721 IGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 766 (766)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred cCCCCCCCccccccchHhHHHHHHHHHHHHHHHHHHHcCCeeeecC
Confidence 9999999999999999999999999999999999999888887764
No 2
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=3.1e-226 Score=1883.75 Aligned_cols=602 Identities=43% Similarity=0.686 Sum_probs=527.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHHH
Q 005640 10 ATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFL 89 (686)
Q Consensus 10 ~~~~~~~~~~~lgl~fa~~~~~~V~~v~~~~~~~~~~~~~~~~G~~~~l~~~~~G~~~~~~~~~M~eIa~aI~EGA~AFL 89 (686)
-...+.+++++++|+|++++++||+|+ |+| +||||||+++|||||++||
T Consensus 11 ~v~~l~~~~~i~~l~~a~~~~~~v~~~-------------------------~~G------~~~M~eIa~~I~eGA~afL 59 (735)
T 4av3_A 11 YVAALFFLIPLVALGFAAANFAAVVRK-------------------------PEG------TERMKEISSYIRSGADSFL 59 (735)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHTS-------------------------CC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-------------------------CCC------CHHHHHHHHHHHHHHHHHH
Confidence 344566777899999999999999884 468 8999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhH
Q 005640 90 FTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANA 169 (686)
Q Consensus 90 ~rqYk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~aNv 169 (686)
+||||+|++|+++++++++++.+ |+++++|++|++||++|||+|||+|||||+
T Consensus 60 ~rqyk~i~~~~vv~~~ll~~~~~---------------------------~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ANv 112 (735)
T 4av3_A 60 AHETKAIFKVAIVIAILLMIFTT---------------------------WQTGVAFLLGAVMSASAGIVGMKMATRANV 112 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877654 479999999999999999999999999999
Q ss_pred HhHHHHhcC-----------------------------------------------------------------------
Q 005640 170 RTTLEARKS----------------------------------------------------------------------- 178 (686)
Q Consensus 170 Rta~aA~~~----------------------------------------------------------------------- 178 (686)
|||+|||++
T Consensus 113 RTA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg~Ga 192 (735)
T 4av3_A 113 RVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGC 192 (735)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchhhhHHHhhhchhH
Confidence 999999743
Q ss_pred ------------------------cCccccCCCCCCCCCccccccccCCccccccccCccchhhhHHHHHHHHHHHHHhh
Q 005640 179 ------------------------VGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISS 234 (686)
Q Consensus 179 ------------------------VGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlFESy~~~~~aamvL~~~~~ 234 (686)
|||||+|||||||||||||||||||||||||||||||||||+++++|+|+|++...
T Consensus 193 S~iALFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRNPAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~~~~ 272 (735)
T 4av3_A 193 SIIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMF 272 (735)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTSCC-----------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceeccccccchhhhhhhcCCCCCCCCCCchhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998652
Q ss_pred cCC-c-------------cccchhHHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHH
Q 005640 235 FGI-N-------------HEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVS 300 (686)
Q Consensus 235 ~~~-~-------------~~~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~ 300 (686)
... . .....++|||+++++|+++|++|++++|. .+++++++++|++++|+++++++++.++++
T Consensus 273 ~~~~~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~SiiG~~~v~~---~~~~~~~~~~l~~~~~~s~~~s~i~~~~~~ 349 (735)
T 4av3_A 273 PIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIV---KKPSDNPQRELNISLWTSALLTVVLTAFLT 349 (735)
T ss_dssp HHTEEEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhheeee---cccccchhHHHhhhHHhhHHHHHHHHHHHH
Confidence 100 0 01234789999999999999999999763 344678999999999999999999999999
Q ss_pred HhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhH
Q 005640 301 WIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVI 380 (686)
Q Consensus 301 ~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~ 380 (686)
++++++...... ......+|++|+|+++|+++|++|+++||||||++|||||+|||+|+||||||||+||++||+||+
T Consensus 350 ~~~l~~~~~~~~--~~~~~~~~~~f~~~~iGlv~g~lI~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~St~ 427 (735)
T 4av3_A 350 YFYLKDLQGLDV--LGFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVF 427 (735)
T ss_dssp HHHHTTCSSHHH--HTCTTGGGHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHHTH
T ss_pred HHHhhhhhhccc--ccccccchHHHHHHHHHHHHHHHHHHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999986432211 112345789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCccccccc
Q 005640 381 IPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 460 (686)
Q Consensus 381 ~pvl~i~~ai~~sy~l~GlyGiAiAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~ 460 (686)
||+++|+++|+.||+++|+||+|+||+|||||+++++++|+||||+||||||||||+|||||||+||+||++||||||+|
T Consensus 428 ~pvl~I~~~I~~s~~~aGlyGiaiAa~GMLst~gi~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTkAi~ 507 (735)
T 4av3_A 428 PPTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIG 507 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEeeecccCccCCccchHHHccCChHHHHhhhccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhhh-----------cCceeecCCchHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005640 461 KGFAIGSAALVSLALFGAFVSRA-----------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVR 529 (686)
Q Consensus 461 KGfAIGSAaL~alaLf~ay~~~~-----------~~~~v~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVR 529 (686)
||||||||+|+||+||++|+++. ....+|+.||+|++|+|+|+|+|||||+++|+||||||++||||||
T Consensus 508 KGfAIGSAaL~AlaLfaay~~~~~~~~~~~~~~~~~~~~~l~~P~VlvGlliGgmlpflFsaltm~AVgrAA~~mV~EVR 587 (735)
T 4av3_A 508 KGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIR 587 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCGGGSSSCGGGTSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cchhHhHHHHHHHHHHHHHHHHHhhhhhhccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998542 1235899999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHhhhchhhHHHHhhHHHHHHHHHHHHhhcccch
Q 005640 530 RQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGA 609 (686)
Q Consensus 530 RQFreipGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pl~vG~~~G~~al~GlL~G~~vsG~~lAi~maNaGGA 609 (686)
|||||||||||||+||||+||||||||+|||||++|+++++++|+++|+++|+++++|||+|++++|++||+||+|+|||
T Consensus 588 RQFreipGimeg~~kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G~~~Ai~m~n~GGA 667 (735)
T 4av3_A 588 RQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSGGA 667 (735)
T ss_dssp -----------------CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCcccCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhcccccccccCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 005640 610 WDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATH 678 (686)
Q Consensus 610 WDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlm~~vslV~ap~~~~~ 678 (686)
|||||||||+|+++ .+|||||+|||||||||||||||||||||||||||+|++|||||+|+|..+
T Consensus 668 WDNAKK~iE~G~~g----~~gKgS~aHkAaVvGDTVGDPfKDTsGPslN~lIKl~~~vslv~ap~~~~~ 732 (735)
T 4av3_A 668 WDNAKKYLEAGNLE----GYGKGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVVSVIAVSIFKHV 732 (735)
T ss_dssp HHHHHHHHHTSCSS----SCCSSSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhhccCCCC----CCCCCChhhcCcccCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999861 238999999999999999999999999999999999999999999999875
No 3
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=45.77 E-value=2e+02 Score=33.76 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005640 322 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 401 (686)
Q Consensus 322 ~~~f~~~~~Gl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnIi~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyG 401 (686)
|..-+|.++|-+.+.+-||+-=+= + .+.-| +.|++++++...+ -++=++|.-+.+-|
T Consensus 83 ~~~ai~Fl~Ga~~S~~aGyiGM~v-A-t~ANv-RTA~AA~~s~~l~--------------------~aL~vAFrgGaVmG 139 (735)
T 4av3_A 83 WQTGVAFLLGAVMSASAGIVGMKM-A-TRANV-RVAEAARTTKKIG--------------------PALKVAYQGGSVMG 139 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHH-HHHHHTTTTCSSH--------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHH-HHHHHHhhcCCcc--------------------HHHHhhhccchHHH
Confidence 445567788888887777764432 1 12233 4666665432111 13335677777888
Q ss_pred HHHHHHHHhhhhhhhheecccc
Q 005640 402 IAVAALGMLSTIATGLAIDAYG 423 (686)
Q Consensus 402 iAiAa~GMLst~~~~la~DayG 423 (686)
..++.+|.|....+.+-...+-
T Consensus 140 l~vvgl~Llgl~~~~~~~~~~~ 161 (735)
T 4av3_A 140 LSVGGFALLGLVLVYLIFGKWM 161 (735)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8899998888777766554433
No 4
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=34.97 E-value=23 Score=37.28 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q 005640 513 TMKSVGSAALKMVEEVRRQFNTI 535 (686)
Q Consensus 513 ~m~AVg~aA~~mV~EVRRQFrei 535 (686)
.|.+|+++|..-|+|++.|||..
T Consensus 18 ~~~~v~~Ga~~~i~ECq~QFr~~ 40 (316)
T 4f0a_B 18 YSASVAVGAQNGIEECKYQFAWE 40 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999975
No 5
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.16 E-value=34 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.464 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcccCCCCCC----CCCCCChhhHHHHHHHHHHh
Q 005640 522 LKMVEEVRRQFNTIPGLME----GTTKPDYATCVKISTDASIK 560 (686)
Q Consensus 522 ~~mV~EVRRQFreipGime----g~~kPDY~~cV~I~T~~Alk 560 (686)
++|++|+|+.|-|+|--.- -+..-+-+.|.++-+|-+=|
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~k 53 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTR 53 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhccc
Confidence 6899999999999983211 14567778999998887765
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.14 E-value=93 Score=26.81 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhHHH----HHHhhHHHHHHHHHHHHHHHHHH
Q 005640 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (686)
Q Consensus 71 ~~~M~eIa~aI~EGA~A----FL~rqYk~i~~~~v~~~~~l~~~ 110 (686)
++.+++-|+.-+..|.. +..+.||...++.+++.++++++
T Consensus 42 t~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 42 ADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 44556777766666665555443
No 7
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=18.56 E-value=12 Score=33.63 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHHh
Q 005640 502 GAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIK 560 (686)
Q Consensus 502 G~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeg~~kPDY~~cV~I~T~~Alk 560 (686)
|..+-.+|-+--|.+|. .+++++||++. || += +..-.+||+++|..+.|.
T Consensus 11 ~~~~~~~~~~~~~~~Vs------ae~L~eEfdef-Gi-~~-~d~VldKc~ELC~~y~ld 60 (101)
T 2keb_A 11 GSSLEVLFQGPGSMSAS------AQQLAEELQIF-GL-DC-EEALIEKLVELCVQYGQN 60 (101)
T ss_dssp -------------CCCC------HHHHHHHHHHH-TC-BC-CHHHHHHHHHHHHHHTCC
T ss_pred CccchheeeCCchhhcc------HHHHHHHHHHc-CC-CC-CHHHHHHHHHHHHHcCCC
Confidence 45566677777777775 68899999984 33 11 124579999999999874
No 8
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=18.02 E-value=81 Score=32.16 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=25.4
Q ss_pred HHHHHhcccCCCCCCCCCCCChhhHHHHHHHHHH
Q 005640 526 EEVRRQFNTIPGLMEGTTKPDYATCVKISTDASI 559 (686)
Q Consensus 526 ~EVRRQFreipGimeg~~kPDY~~cV~I~T~~Al 559 (686)
+.+..||.+ .|+++.+.+ ||++|+|-..|-+.
T Consensus 99 ~~~~kq~~~-~g~~~~~~~-~f~~~i~~~~rQ~~ 130 (237)
T 3fss_A 99 ENTLNQFKK-LGLLDSNVT-DFEKCVEYIRKQAI 130 (237)
T ss_dssp HHHHHHHHH-TTSSCTTCC-CTHHHHHHHHHHHH
T ss_pred HHhhhhhhh-cCCCcccch-hHHHHHHHHHHHHh
Confidence 457899987 588888777 99999998865554
No 9
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=15.73 E-value=68 Score=25.61 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcccC
Q 005640 519 SAALKMVEEVRRQFNTI 535 (686)
Q Consensus 519 ~aA~~mV~EVRRQFrei 535 (686)
+-+.++|.|+|||.+-|
T Consensus 3 ~~mdrivkemrrQl~mI 19 (52)
T 2o1k_A 3 KQMDRVVKEMRRQLEMI 19 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45779999999999644
No 10
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=15.23 E-value=39 Score=30.73 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHH----HHHHhhHHHHHHHHHHHHHHHHH
Q 005640 73 KCADIQSAISEGAT----SFLFTEYQYVGVFMIAFAILIFV 109 (686)
Q Consensus 73 ~M~eIa~aI~EGA~----AFL~rqYk~i~~~~v~~~~~l~~ 109 (686)
.|++-|+.-+..|. .+..+.||..+++.+++.+++++
T Consensus 72 ~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~i 112 (119)
T 2kog_A 72 ALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 112 (119)
T ss_dssp CCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443 35566788877766666555544
Done!