Query 005640
Match_columns 686
No_of_seqs 144 out of 731
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 03:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005640.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005640hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 26.4 8.7 0.00064 28.6 0.7 9 188-196 27-35 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 22.7 12 0.00085 28.0 0.8 9 188-196 28-36 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 14.9 18 0.0013 27.5 0.2 9 188-196 36-44 (59)
4 d2iuba2 f.17.3.1 (A:286-349) M 12.8 62 0.0045 24.0 2.9 20 657-676 2-21 (64)
5 d3dwya1 a.29.2.1 (A:1084-1197) 12.5 22 0.0016 29.3 0.2 19 610-640 78-96 (114)
6 d1jhfa1 a.4.5.2 (A:2-72) LexA 12.5 38 0.0028 25.9 1.6 25 337-361 10-35 (71)
7 d3d7ca1 a.29.2.1 (A:731-832) G 12.3 23 0.0017 28.6 0.2 30 519-551 5-39 (102)
8 d1yuaa2 g.41.3.3 (A:66-122) Pr 11.1 38 0.0028 25.7 1.1 11 187-197 10-21 (57)
9 d1jboa_ a.1.1.3 (A:) Phycocyan 10.8 91 0.0067 27.4 3.8 40 514-553 41-87 (162)
10 d1oyvi_ g.69.1.1 (I:) Wound-in 10.7 33 0.0024 29.1 0.7 9 188-196 51-59 (116)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=26.35 E-value=8.7 Score=28.59 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=7.4
Q ss_pred CCCCCCccc
Q 005640 188 EDDPRNPAV 196 (686)
Q Consensus 188 EDDPRNPav 196 (686)
|.|||||-.
T Consensus 27 eSdp~npka 35 (51)
T d4sgbi_ 27 QSDPKKPKA 35 (51)
T ss_dssp CBCTTSCCC
T ss_pred CCCCCCCCc
Confidence 789999953
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=22.65 E-value=12 Score=28.04 Aligned_cols=9 Identities=67% Similarity=1.191 Sum_probs=7.4
Q ss_pred CCCCCCccc
Q 005640 188 EDDPRNPAV 196 (686)
Q Consensus 188 EDDPRNPav 196 (686)
|.|||||-.
T Consensus 28 esdp~nPK~ 36 (53)
T d1tiha_ 28 ESDPRNPKA 36 (53)
T ss_dssp CCCSSSSCC
T ss_pred CCCCCCCCc
Confidence 789999964
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=14.91 E-value=18 Score=27.50 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.2
Q ss_pred CCCCCCccc
Q 005640 188 EDDPRNPAV 196 (686)
Q Consensus 188 EDDPRNPav 196 (686)
|.|||||-.
T Consensus 36 esdp~npka 44 (59)
T d1pjua1 36 ESDPKRPNA 44 (59)
T ss_dssp CBBTTBCCE
T ss_pred cCCCCCCCc
Confidence 779999954
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.78 E-value=62 Score=23.97 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 005640 657 LNILIKLMAVESLVFAPFFA 676 (686)
Q Consensus 657 lniLIKlm~~vslV~ap~~~ 676 (686)
.|-.+|.+++++.+|.|+=.
T Consensus 2 ~N~~mk~lT~it~iflP~t~ 21 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTF 21 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999654
No 5
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.55 E-value=22 Score=29.27 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=14.6
Q ss_pred hhhhhhHHhhcccccccccCCCCCccccccc
Q 005640 610 WDNAKKYIEAGASEHARTLGPKGSEPHKAAV 640 (686)
Q Consensus 610 WDNAKKyIE~G~~~~~~~~ggKGS~aHkAaV 640 (686)
|+||++|- +++|+.|+.|.
T Consensus 78 ~~Na~~yN------------~~~s~~~~~A~ 96 (114)
T d3dwya1 78 FNNAWLYN------------RKTSRVYKFCS 96 (114)
T ss_dssp HHHHHHHS------------CTTSHHHHHHH
T ss_pred HHHHHHHC------------CCCCHHHHHHH
Confidence 99999982 46788887763
No 6
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=12.49 E-value=38 Score=25.85 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHhhhhcccCCcch-hHHHHhhcc
Q 005640 337 IIGFVTEYYTSNAYSP-VQDVADSCR 361 (686)
Q Consensus 337 lI~~~TeYyTs~~~~P-Vr~IA~as~ 361 (686)
+.-++.+||..+.|.| +|||++...
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 3568899999999988 689998764
No 7
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.34 E-value=23 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHh-----cccCCCCCCCCCCCChhhHH
Q 005640 519 SAALKMVEEVRRQ-----FNTIPGLMEGTTKPDYATCV 551 (686)
Q Consensus 519 ~aA~~mV~EVRRQ-----FreipGimeg~~kPDY~~cV 551 (686)
++-.+++++++++ |++-| ..+.-|||.+-|
T Consensus 5 ~~l~~il~~l~~~~~s~~F~~pv---~~~~~pdY~~~I 39 (102)
T d3d7ca1 5 TTLKNLLAQIKSHPSAWPFMEPV---KKSEAPDYYEVI 39 (102)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCC---CTTTSTTHHHHC
T ss_pred HHHHHHHHHHHhCCCCCccCCCC---ChhhCcCHHHHc
Confidence 3456777787654 65533 345679999866
No 8
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=11.08 E-value=38 Score=25.73 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.1
Q ss_pred CCCCCC-Ccccc
Q 005640 187 PEDDPR-NPAVI 197 (686)
Q Consensus 187 PEDDPR-NPavI 197 (686)
|+-||- ||+||
T Consensus 10 P~~D~dGn~~vv 21 (57)
T d1yuaa2 10 PQQDPEGNKTMV 21 (57)
T ss_dssp CSSCTTCCCEEE
T ss_pred CccCCCCCEeEE
Confidence 555554 88877
No 9
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=10.76 E-value=91 Score=27.39 Aligned_cols=40 Identities=13% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHh-cccCCCCCC--CCCCC---C-hhhHHHH
Q 005640 514 MKSVGSAALKMVEEVRRQ-FNTIPGLME--GTTKP---D-YATCVKI 553 (686)
Q Consensus 514 m~AVg~aA~~mV~EVRRQ-FreipGime--g~~kP---D-Y~~cV~I 553 (686)
.+.....+.++|+|.+++ |++.|.+.+ |..-| + +++|.+=
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD 87 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARD 87 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHH
Confidence 455677889999999888 556898875 33333 2 5778654
No 10
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=10.72 E-value=33 Score=29.07 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.1
Q ss_pred CCCCCCccc
Q 005640 188 EDDPRNPAV 196 (686)
Q Consensus 188 EDDPRNPav 196 (686)
|.|||||-.
T Consensus 51 esdp~nPKa 59 (116)
T d1oyvi_ 51 ESDPKRPNA 59 (116)
T ss_dssp CBCSSSCCE
T ss_pred ccCCCCCCc
Confidence 778999864
Done!