Query 005641
Match_columns 686
No_of_seqs 177 out of 197
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 11:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 5E-34 1.1E-38 320.6 37.0 373 270-669 107-511 (511)
2 KOG4677 Golgi integral membran 100.0 5.4E-30 1.2E-34 273.8 40.4 373 245-679 157-551 (554)
3 KOG0963 Transcription factor/C 99.8 4.8E-17 1E-21 181.7 36.6 337 324-684 184-629 (629)
4 PF08172 CASP_C: CASP C termin 99.6 1.7E-15 3.6E-20 156.7 14.5 117 540-676 92-239 (248)
5 KOG0612 Rho-associated, coiled 99.4 1.6E-10 3.5E-15 137.0 31.3 311 239-588 534-883 (1317)
6 KOG0161 Myosin class II heavy 98.7 0.00034 7.3E-09 89.4 45.7 46 259-304 954-999 (1930)
7 TIGR02169 SMC_prok_A chromosom 98.7 0.00065 1.4E-08 83.3 47.1 10 286-295 194-203 (1164)
8 KOG0161 Myosin class II heavy 98.7 0.00033 7.2E-09 89.4 44.5 23 544-566 1121-1143(1930)
9 KOG0971 Microtubule-associated 98.7 0.00086 1.9E-08 79.1 43.0 273 278-582 251-545 (1243)
10 TIGR02168 SMC_prok_B chromosom 98.7 0.0017 3.6E-08 79.5 48.0 7 551-557 464-470 (1179)
11 PF07888 CALCOCO1: Calcium bin 98.6 0.0034 7.4E-08 71.9 46.2 76 509-588 382-457 (546)
12 PRK02224 chromosome segregatio 98.6 0.0054 1.2E-07 74.1 47.9 7 138-144 68-74 (880)
13 PRK02224 chromosome segregatio 98.6 0.004 8.7E-08 75.2 46.7 37 496-532 604-640 (880)
14 TIGR00606 rad50 rad50. This fa 98.5 0.0022 4.8E-08 81.0 44.6 9 250-258 750-758 (1311)
15 COG1196 Smc Chromosome segrega 98.5 0.008 1.7E-07 75.2 48.1 98 278-376 188-286 (1163)
16 KOG0612 Rho-associated, coiled 98.5 0.0037 8.1E-08 76.1 42.9 185 289-479 493-693 (1317)
17 PF07888 CALCOCO1: Calcium bin 98.5 0.0017 3.8E-08 74.2 38.3 95 282-380 142-236 (546)
18 PF10174 Cast: RIM-binding pro 98.4 0.0031 6.8E-08 75.3 39.8 40 545-584 319-358 (775)
19 PF10174 Cast: RIM-binding pro 98.4 0.013 2.8E-07 70.2 43.7 45 541-585 548-599 (775)
20 KOG4673 Transcription factor T 98.4 0.012 2.6E-07 68.2 41.1 42 494-535 862-903 (961)
21 PF12128 DUF3584: Protein of u 98.4 0.024 5.1E-07 71.4 48.3 98 258-362 242-339 (1201)
22 KOG0976 Rho/Rac1-interacting s 98.3 0.015 3.2E-07 68.4 44.4 128 274-402 83-210 (1265)
23 COG1196 Smc Chromosome segrega 98.3 0.022 4.7E-07 71.5 46.8 41 546-586 458-498 (1163)
24 KOG4674 Uncharacterized conser 98.3 0.029 6.2E-07 71.7 45.3 192 281-476 778-988 (1822)
25 TIGR00606 rad50 rad50. This fa 98.3 0.015 3.2E-07 73.7 43.8 17 569-585 1075-1091(1311)
26 PF00261 Tropomyosin: Tropomyo 98.3 0.0008 1.7E-08 69.7 27.1 92 498-590 127-218 (237)
27 PF00038 Filament: Intermediat 98.2 0.012 2.6E-07 62.7 38.1 41 543-583 264-304 (312)
28 PF05701 WEMBL: Weak chloropla 98.2 0.023 4.9E-07 65.5 44.4 93 498-591 323-415 (522)
29 KOG0976 Rho/Rac1-interacting s 98.2 0.033 7.1E-07 65.6 44.3 152 428-583 333-504 (1265)
30 KOG0977 Nuclear envelope prote 98.2 0.0054 1.2E-07 70.3 33.3 307 251-588 59-389 (546)
31 KOG0996 Structural maintenance 98.2 0.048 1E-06 66.8 42.1 46 544-589 545-590 (1293)
32 KOG4673 Transcription factor T 98.1 0.037 8.1E-07 64.3 43.1 134 340-478 471-605 (961)
33 PRK03918 chromosome segregatio 98.1 0.055 1.2E-06 65.4 46.6 36 496-531 617-652 (880)
34 PF09726 Macoilin: Transmembra 98.1 0.0024 5.3E-08 75.6 29.8 74 309-386 423-496 (697)
35 KOG0977 Nuclear envelope prote 98.1 0.017 3.7E-07 66.4 35.2 268 301-582 53-369 (546)
36 PF12128 DUF3584: Protein of u 98.1 0.054 1.2E-06 68.2 43.0 22 562-583 771-792 (1201)
37 PF00261 Tropomyosin: Tropomyo 98.1 0.0041 8.9E-08 64.5 27.9 183 287-474 40-225 (237)
38 PF09726 Macoilin: Transmembra 98.1 0.024 5.1E-07 67.5 36.8 112 363-479 544-655 (697)
39 KOG4674 Uncharacterized conser 98.0 0.11 2.4E-06 66.6 48.6 82 512-593 965-1049(1822)
40 PF15070 GOLGA2L5: Putative go 98.0 0.054 1.2E-06 63.7 38.7 55 247-301 7-61 (617)
41 KOG1029 Endocytic adaptor prot 98.0 0.039 8.5E-07 64.9 36.1 136 428-575 454-598 (1118)
42 KOG4643 Uncharacterized coiled 98.0 0.082 1.8E-06 63.9 43.3 182 401-585 374-601 (1195)
43 PF00038 Filament: Intermediat 98.0 0.033 7.2E-07 59.3 37.5 21 562-582 262-282 (312)
44 PRK03918 chromosome segregatio 97.9 0.11 2.4E-06 62.8 47.3 31 449-479 401-431 (880)
45 PRK04863 mukB cell division pr 97.9 0.16 3.4E-06 65.3 42.5 114 279-398 289-402 (1486)
46 PF09787 Golgin_A5: Golgin sub 97.9 0.012 2.6E-07 67.5 29.0 187 343-530 109-313 (511)
47 KOG0980 Actin-binding protein 97.8 0.15 3.2E-06 61.1 36.2 107 345-477 412-518 (980)
48 PRK04863 mukB cell division pr 97.6 0.51 1.1E-05 60.8 42.0 22 549-570 639-660 (1486)
49 KOG0996 Structural maintenance 97.5 0.47 1E-05 58.5 41.8 55 241-295 264-318 (1293)
50 KOG0994 Extracellular matrix g 97.5 0.47 1E-05 58.3 40.1 36 548-583 1710-1745(1758)
51 KOG0971 Microtubule-associated 97.5 0.46 1E-05 57.2 36.1 64 492-556 404-470 (1243)
52 KOG0999 Microtubule-associated 97.4 0.23 4.9E-06 56.9 29.9 189 371-583 43-236 (772)
53 PHA02562 46 endonuclease subun 97.4 0.14 3E-06 58.8 29.4 37 494-530 361-397 (562)
54 KOG0933 Structural maintenance 97.4 0.66 1.4E-05 56.6 40.4 98 301-405 705-806 (1174)
55 KOG0933 Structural maintenance 97.3 0.61 1.3E-05 56.8 33.4 29 364-392 734-762 (1174)
56 PF12718 Tropomyosin_1: Tropom 97.3 0.079 1.7E-06 51.3 21.3 134 345-480 9-142 (143)
57 PF01576 Myosin_tail_1: Myosin 97.2 8.1E-05 1.8E-09 89.9 0.0 142 436-585 325-484 (859)
58 KOG0963 Transcription factor/C 97.2 0.39 8.4E-06 55.9 29.0 158 301-459 193-357 (629)
59 PF01576 Myosin_tail_1: Myosin 97.2 8.8E-05 1.9E-09 89.6 0.0 50 421-470 317-366 (859)
60 PF14915 CCDC144C: CCDC144C pr 97.2 0.49 1.1E-05 50.8 30.2 219 227-453 14-256 (305)
61 KOG0250 DNA repair protein RAD 97.2 1.2 2.6E-05 55.0 36.2 37 546-582 420-456 (1074)
62 KOG0250 DNA repair protein RAD 97.1 1.4 3.1E-05 54.3 36.7 24 546-569 441-464 (1074)
63 PF13851 GAS: Growth-arrest sp 97.0 0.37 8E-06 49.2 23.6 136 437-572 39-174 (201)
64 KOG1029 Endocytic adaptor prot 96.9 1.5 3.2E-05 52.4 34.0 203 315-534 372-578 (1118)
65 PF05557 MAD: Mitotic checkpoi 96.9 0.00025 5.4E-09 84.2 0.0 21 417-437 256-276 (722)
66 KOG0964 Structural maintenance 96.6 2.8 6.1E-05 51.3 38.6 107 290-399 184-292 (1200)
67 PF05667 DUF812: Protein of un 96.6 2.3 5E-05 50.2 29.9 88 495-588 444-531 (594)
68 PF15070 GOLGA2L5: Putative go 96.6 2.5 5.3E-05 50.2 44.5 60 304-363 4-63 (617)
69 PRK09039 hypothetical protein; 96.5 0.55 1.2E-05 51.6 22.8 119 278-401 48-166 (343)
70 PF05701 WEMBL: Weak chloropla 96.4 2.6 5.7E-05 48.8 50.1 52 428-479 305-356 (522)
71 COG4942 Membrane-bound metallo 96.4 2.3 4.9E-05 48.1 31.6 68 284-355 39-106 (420)
72 COG4942 Membrane-bound metallo 96.3 2.6 5.7E-05 47.6 29.9 78 246-334 40-117 (420)
73 COG1579 Zn-ribbon protein, pos 96.2 1.4 3E-05 46.4 22.3 26 273-298 18-43 (239)
74 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.99 2.2E-05 42.9 19.7 21 392-412 37-57 (132)
75 KOG4643 Uncharacterized coiled 96.2 5 0.00011 49.4 40.7 61 417-477 435-498 (1195)
76 PF12718 Tropomyosin_1: Tropom 96.2 0.92 2E-05 44.0 19.4 113 283-404 21-133 (143)
77 PF06160 EzrA: Septation ring 96.2 3.9 8.4E-05 47.9 37.7 95 492-587 321-425 (560)
78 PF05622 HOOK: HOOK protein; 96.1 0.0016 3.5E-08 77.4 0.0 62 258-323 294-358 (713)
79 KOG4677 Golgi integral membran 96.0 2.3 4.9E-05 48.1 23.8 89 388-478 208-296 (554)
80 PF05483 SCP-1: Synaptonemal c 96.0 4.9 0.00011 47.7 46.8 74 253-329 224-307 (786)
81 TIGR01843 type_I_hlyD type I s 96.0 3.2 7E-05 45.4 25.7 23 456-478 249-271 (423)
82 PF05557 MAD: Mitotic checkpoi 95.9 0.011 2.4E-07 70.5 6.0 34 547-580 502-535 (722)
83 KOG0946 ER-Golgi vesicle-tethe 95.8 4.8 0.0001 48.6 26.6 160 240-402 649-822 (970)
84 PRK04778 septation ring format 95.8 5.4 0.00012 46.8 39.4 95 492-589 325-431 (569)
85 COG4372 Uncharacterized protei 95.8 4.3 9.3E-05 45.3 31.1 32 355-386 121-152 (499)
86 KOG0994 Extracellular matrix g 95.8 8 0.00017 48.3 37.8 35 544-578 1713-1747(1758)
87 KOG0978 E3 ubiquitin ligase in 95.8 6.4 0.00014 47.1 33.3 31 502-532 591-621 (698)
88 PRK09039 hypothetical protein; 95.7 1.5 3.3E-05 48.2 21.3 29 291-319 75-103 (343)
89 COG1579 Zn-ribbon protein, pos 95.7 1.4 3E-05 46.4 19.7 86 447-533 46-131 (239)
90 PF15619 Lebercilin: Ciliary p 95.7 2.9 6.4E-05 42.6 26.0 36 437-472 155-190 (194)
91 PF10473 CENP-F_leu_zip: Leuci 95.6 2.3 5.1E-05 41.3 20.7 99 291-394 4-102 (140)
92 TIGR02680 conserved hypothetic 95.6 11 0.00024 48.7 33.0 42 544-585 924-965 (1353)
93 PF05667 DUF812: Protein of un 95.6 7 0.00015 46.3 36.6 41 294-334 325-365 (594)
94 PF14915 CCDC144C: CCDC144C pr 95.5 4.6 0.0001 43.7 39.2 214 305-529 32-259 (305)
95 KOG0018 Structural maintenance 95.4 10 0.00022 47.2 32.9 15 553-567 934-948 (1141)
96 KOG0995 Centromere-associated 95.4 7.3 0.00016 45.4 42.3 87 307-394 262-361 (581)
97 PF09755 DUF2046: Uncharacteri 95.3 5.3 0.00012 43.5 37.0 76 254-335 33-108 (310)
98 PF13851 GAS: Growth-arrest sp 95.3 3.9 8.4E-05 41.8 23.8 123 281-404 32-161 (201)
99 TIGR03185 DNA_S_dndD DNA sulfu 95.3 8.7 0.00019 45.7 34.7 58 305-362 224-281 (650)
100 PF14992 TMCO5: TMCO5 family 95.2 2.6 5.7E-05 45.2 19.9 37 367-404 14-50 (280)
101 PF10212 TTKRSYEDQ: Predicted 95.1 6.9 0.00015 45.3 24.2 74 498-575 441-514 (518)
102 TIGR01843 type_I_hlyD type I s 95.0 7 0.00015 42.8 25.9 13 462-474 248-260 (423)
103 KOG2129 Uncharacterized conser 94.9 8.2 0.00018 43.5 27.2 41 490-530 252-296 (552)
104 PF06705 SF-assemblin: SF-asse 94.9 5.7 0.00012 41.5 25.7 131 272-409 81-220 (247)
105 PF05010 TACC: Transforming ac 94.9 5.4 0.00012 41.2 28.3 16 250-265 4-19 (207)
106 KOG0946 ER-Golgi vesicle-tethe 94.7 14 0.00029 44.9 32.7 31 448-478 801-831 (970)
107 PRK01156 chromosome segregatio 94.6 15 0.00033 45.0 44.7 27 562-588 522-548 (895)
108 KOG1853 LIS1-interacting prote 94.6 7.5 0.00016 41.2 21.8 49 315-363 31-79 (333)
109 TIGR03185 DNA_S_dndD DNA sulfu 94.4 15 0.00032 43.8 37.4 22 448-469 393-414 (650)
110 PF14662 CCDC155: Coiled-coil 94.4 6.9 0.00015 40.0 27.1 43 358-401 68-110 (193)
111 PRK04778 septation ring format 94.3 14 0.00031 43.3 41.2 25 388-412 284-308 (569)
112 PF09789 DUF2353: Uncharacteri 94.2 10 0.00023 41.5 30.7 190 278-478 11-228 (319)
113 PF10168 Nup88: Nuclear pore c 94.2 8 0.00017 46.8 23.1 121 446-576 593-713 (717)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.1 5.4 0.00012 37.9 20.0 40 295-334 8-47 (132)
115 PRK11281 hypothetical protein; 94.1 23 0.00049 45.0 42.6 32 448-479 301-332 (1113)
116 PF08317 Spc7: Spc7 kinetochor 94.0 5.2 0.00011 43.6 19.5 119 277-403 150-268 (325)
117 PF08614 ATG16: Autophagy prot 93.9 0.26 5.7E-06 49.7 8.7 96 494-590 77-172 (194)
118 PF04849 HAP1_N: HAP1 N-termin 93.8 12 0.00026 40.8 27.6 70 494-571 230-299 (306)
119 PF15619 Lebercilin: Ciliary p 93.8 8.7 0.00019 39.2 25.2 38 372-410 119-156 (194)
120 PF04849 HAP1_N: HAP1 N-termin 93.8 12 0.00027 40.8 29.0 71 446-526 234-304 (306)
121 KOG0964 Structural maintenance 93.7 24 0.00052 43.8 41.3 65 337-402 433-497 (1200)
122 TIGR03007 pepcterm_ChnLen poly 93.6 16 0.00035 41.6 24.7 27 492-518 356-382 (498)
123 PF09730 BicD: Microtubule-ass 93.5 23 0.0005 42.9 42.7 163 421-584 275-462 (717)
124 KOG0999 Microtubule-associated 93.4 19 0.00042 42.0 32.2 203 313-530 10-219 (772)
125 PF07111 HCR: Alpha helical co 93.4 22 0.00048 42.6 43.3 25 313-337 192-216 (739)
126 TIGR01005 eps_transp_fam exopo 93.4 16 0.00035 44.0 24.0 18 89-106 71-88 (754)
127 PRK10884 SH3 domain-containing 93.4 1.2 2.7E-05 45.7 12.6 59 319-377 108-166 (206)
128 KOG0962 DNA repair protein RAD 93.4 31 0.00068 44.1 36.4 192 361-561 882-1082(1294)
129 PF05483 SCP-1: Synaptonemal c 93.3 23 0.00049 42.4 45.8 162 427-589 466-656 (786)
130 PRK10246 exonuclease subunit S 93.3 30 0.00065 43.7 43.2 41 438-478 716-756 (1047)
131 PF13514 AAA_27: AAA domain 93.2 31 0.00068 43.7 42.5 22 243-264 149-170 (1111)
132 PF10481 CENP-F_N: Cenp-F N-te 93.2 12 0.00027 40.1 19.5 103 366-480 20-129 (307)
133 KOG2129 Uncharacterized conser 92.6 21 0.00047 40.3 23.9 86 364-456 208-316 (552)
134 KOG1853 LIS1-interacting prote 92.6 16 0.00036 38.8 23.5 86 492-589 92-177 (333)
135 KOG4593 Mitotic checkpoint pro 92.5 29 0.00063 41.6 42.7 16 544-559 380-395 (716)
136 PF14662 CCDC155: Coiled-coil 92.2 15 0.00033 37.6 27.0 112 274-386 13-124 (193)
137 PF05911 DUF869: Plant protein 92.2 35 0.00077 41.7 28.4 45 421-465 669-713 (769)
138 PRK01156 chromosome segregatio 92.1 37 0.0008 41.8 47.8 9 646-654 827-835 (895)
139 smart00787 Spc7 Spc7 kinetocho 91.8 16 0.00034 40.0 19.2 56 346-402 207-262 (312)
140 TIGR01005 eps_transp_fam exopo 91.8 36 0.00078 41.1 25.3 27 447-473 377-403 (754)
141 PF10473 CENP-F_leu_zip: Leuci 91.8 14 0.0003 36.1 19.9 44 342-385 16-59 (140)
142 PF07111 HCR: Alpha helical co 91.7 36 0.00078 40.9 44.4 78 324-402 150-227 (739)
143 KOG0980 Actin-binding protein 91.5 42 0.00092 41.3 38.7 88 393-480 424-514 (980)
144 TIGR03007 pepcterm_ChnLen poly 91.5 30 0.00065 39.5 22.2 15 652-666 472-486 (498)
145 PF05622 HOOK: HOOK protein; 91.3 0.059 1.3E-06 64.3 0.0 19 153-174 33-51 (713)
146 KOG1937 Uncharacterized conser 91.1 33 0.00072 39.3 25.1 73 508-587 355-428 (521)
147 KOG0249 LAR-interacting protei 91.0 43 0.00093 40.4 23.1 125 406-534 204-337 (916)
148 PF04156 IncA: IncA protein; 90.9 16 0.00034 36.3 16.8 36 284-319 82-117 (191)
149 PRK10929 putative mechanosensi 90.9 57 0.0012 41.6 48.5 34 447-480 280-313 (1109)
150 PF06818 Fez1: Fez1; InterPro 90.8 22 0.00048 36.7 22.7 26 270-295 8-33 (202)
151 smart00787 Spc7 Spc7 kinetocho 90.7 18 0.00039 39.6 18.2 105 277-385 152-260 (312)
152 PF09755 DUF2046: Uncharacteri 90.7 29 0.00064 38.0 38.7 55 280-334 24-78 (310)
153 TIGR01010 BexC_CtrB_KpsE polys 90.3 32 0.00069 37.7 24.8 31 451-481 168-198 (362)
154 TIGR02680 conserved hypothetic 90.1 72 0.0016 41.6 35.2 43 434-476 923-965 (1353)
155 PF11559 ADIP: Afadin- and alp 90.1 11 0.00023 36.4 14.4 80 273-352 70-149 (151)
156 KOG4593 Mitotic checkpoint pro 89.6 54 0.0012 39.4 39.6 60 241-300 162-221 (716)
157 PF10498 IFT57: Intra-flagella 89.4 15 0.00032 41.0 16.5 100 285-384 215-314 (359)
158 PF06160 EzrA: Septation ring 89.2 52 0.0011 38.7 38.8 25 388-412 280-304 (560)
159 PF08614 ATG16: Autophagy prot 89.2 7.1 0.00015 39.4 12.8 45 339-383 140-184 (194)
160 PF05010 TACC: Transforming ac 88.9 31 0.00068 35.7 30.2 30 547-576 174-203 (207)
161 PF15397 DUF4618: Domain of un 88.8 37 0.0008 36.3 30.2 43 490-532 185-227 (258)
162 PF03148 Tektin: Tektin family 88.7 46 0.00099 37.3 27.7 199 254-462 115-361 (384)
163 PF05911 DUF869: Plant protein 88.7 69 0.0015 39.3 32.8 36 367-403 130-165 (769)
164 KOG0982 Centrosomal protein Nu 88.6 50 0.0011 37.7 25.7 56 310-365 214-272 (502)
165 KOG0995 Centromere-associated 88.4 59 0.0013 38.3 38.4 100 275-385 220-322 (581)
166 PF09730 BicD: Microtubule-ass 88.2 70 0.0015 38.9 43.1 35 446-480 265-299 (717)
167 PF09728 Taxilin: Myosin-like 88.2 44 0.00095 36.5 43.0 22 509-530 248-269 (309)
168 PF15254 CCDC14: Coiled-coil d 88.1 72 0.0016 38.9 23.4 44 15-58 12-59 (861)
169 PF12325 TMF_TATA_bd: TATA ele 88.0 19 0.00042 34.2 14.0 35 288-322 21-55 (120)
170 PF08317 Spc7: Spc7 kinetochor 88.0 45 0.00097 36.4 30.4 23 277-299 76-98 (325)
171 PF10267 Tmemb_cc2: Predicted 87.6 31 0.00066 39.1 17.6 42 517-565 274-315 (395)
172 PF09728 Taxilin: Myosin-like 87.4 49 0.0011 36.2 37.9 47 270-316 51-97 (309)
173 PF13514 AAA_27: AAA domain 87.3 96 0.0021 39.5 43.6 29 450-478 805-833 (1111)
174 PLN02939 transferase, transfer 87.2 93 0.002 39.2 30.9 141 418-570 257-398 (977)
175 PLN02939 transferase, transfer 86.9 96 0.0021 39.1 29.2 53 334-386 224-279 (977)
176 PF12325 TMF_TATA_bd: TATA ele 86.9 24 0.00053 33.5 14.0 90 434-530 18-107 (120)
177 COG0419 SbcC ATPase involved i 86.8 92 0.002 38.7 48.5 15 246-260 324-338 (908)
178 PRK10884 SH3 domain-containing 86.8 10 0.00023 39.0 12.4 9 241-249 74-82 (206)
179 PF03148 Tektin: Tektin family 86.0 64 0.0014 36.2 38.5 47 315-361 116-162 (384)
180 KOG4360 Uncharacterized coiled 85.8 75 0.0016 37.1 19.3 33 277-309 84-116 (596)
181 PF05384 DegS: Sensor protein 85.3 42 0.00091 33.4 17.2 99 494-592 30-128 (159)
182 TIGR03017 EpsF chain length de 84.9 72 0.0016 35.7 24.6 15 92-106 69-83 (444)
183 KOG4809 Rab6 GTPase-interactin 84.4 93 0.002 36.6 32.4 83 317-407 312-394 (654)
184 KOG1003 Actin filament-coating 84.3 54 0.0012 33.8 26.1 48 541-588 137-184 (205)
185 KOG0982 Centrosomal protein Nu 84.3 83 0.0018 36.0 26.1 21 58-78 20-40 (502)
186 COG0419 SbcC ATPase involved i 84.1 1.2E+02 0.0026 37.7 52.1 11 632-642 739-749 (908)
187 KOG4807 F-actin binding protei 83.9 83 0.0018 35.6 26.0 39 511-553 518-556 (593)
188 PF04111 APG6: Autophagy prote 83.9 17 0.00036 39.7 13.0 81 494-582 53-133 (314)
189 PF11559 ADIP: Afadin- and alp 83.7 43 0.00094 32.2 18.3 19 510-528 131-149 (151)
190 PF04156 IncA: IncA protein; 83.5 49 0.0011 32.8 17.6 39 436-474 148-186 (191)
191 KOG4603 TBP-1 interacting prot 83.5 25 0.00054 35.5 12.7 66 283-371 79-144 (201)
192 KOG0804 Cytoplasmic Zn-finger 83.1 79 0.0017 36.3 17.8 45 358-403 348-392 (493)
193 PF10168 Nup88: Nuclear pore c 83.0 1.2E+02 0.0027 36.9 21.7 24 451-474 644-667 (717)
194 PRK11281 hypothetical protein; 82.5 1.6E+02 0.0034 37.9 45.3 27 271-297 79-105 (1113)
195 PF15397 DUF4618: Domain of un 82.5 75 0.0016 34.1 28.3 43 320-362 65-107 (258)
196 KOG2991 Splicing regulator [RN 82.4 76 0.0016 34.1 23.3 265 152-460 28-306 (330)
197 PRK09841 cryptic autophosphory 82.2 1.3E+02 0.0028 36.6 21.5 23 90-112 85-108 (726)
198 PF07106 TBPIP: Tat binding pr 82.2 16 0.00035 35.9 11.1 79 494-585 75-161 (169)
199 COG4372 Uncharacterized protei 81.8 99 0.0021 35.1 33.5 10 252-261 75-84 (499)
200 PF05335 DUF745: Protein of un 81.7 66 0.0014 32.9 17.9 65 338-403 62-126 (188)
201 PF06818 Fez1: Fez1; InterPro 81.6 69 0.0015 33.2 21.0 24 490-513 175-199 (202)
202 KOG0249 LAR-interacting protei 81.5 1.4E+02 0.003 36.4 23.3 13 495-507 220-232 (916)
203 PLN03188 kinesin-12 family pro 81.4 1.8E+02 0.0038 37.7 38.3 133 447-591 1115-1247(1320)
204 PRK10361 DNA recombination pro 81.0 1.2E+02 0.0025 35.4 24.3 29 564-592 382-410 (475)
205 COG2433 Uncharacterized conser 81.0 20 0.00043 42.4 12.7 33 448-480 431-463 (652)
206 KOG1899 LAR transmembrane tyro 80.8 1.3E+02 0.0028 36.1 18.8 43 301-354 108-150 (861)
207 COG1340 Uncharacterized archae 80.0 97 0.0021 33.8 33.4 20 346-365 58-77 (294)
208 COG1842 PspA Phage shock prote 80.0 83 0.0018 33.0 20.9 57 330-386 11-67 (225)
209 COG2433 Uncharacterized conser 79.7 33 0.00072 40.6 13.9 10 150-159 260-269 (652)
210 PF15035 Rootletin: Ciliary ro 79.6 75 0.0016 32.3 19.0 94 359-460 69-162 (182)
211 KOG0804 Cytoplasmic Zn-finger 79.4 95 0.0021 35.7 16.8 39 544-582 417-455 (493)
212 PF15290 Syntaphilin: Golgi-lo 79.2 15 0.00032 39.6 10.1 86 499-584 69-167 (305)
213 PF15066 CAGE1: Cancer-associa 78.9 1.3E+02 0.0029 34.8 27.2 50 420-469 385-434 (527)
214 PF06705 SF-assemblin: SF-asse 78.5 91 0.002 32.6 32.6 29 304-332 5-33 (247)
215 PRK15178 Vi polysaccharide exp 77.9 1.4E+02 0.003 34.4 24.7 31 567-597 349-379 (434)
216 PF00769 ERM: Ezrin/radixin/mo 77.9 98 0.0021 32.7 17.3 42 437-478 80-121 (246)
217 KOG0978 E3 ubiquitin ligase in 77.8 1.8E+02 0.0038 35.5 42.7 45 543-587 561-605 (698)
218 PF09744 Jnk-SapK_ap_N: JNK_SA 77.6 75 0.0016 31.6 13.9 20 278-297 31-50 (158)
219 PF04111 APG6: Autophagy prote 77.2 58 0.0013 35.6 14.4 12 368-379 68-79 (314)
220 KOG4403 Cell surface glycoprot 77.2 1.4E+02 0.0031 34.2 21.9 69 499-567 348-426 (575)
221 PF10234 Cluap1: Clusterin-ass 77.1 1.1E+02 0.0024 32.9 17.5 70 411-480 148-217 (267)
222 KOG0018 Structural maintenance 76.5 2.3E+02 0.0049 36.1 36.4 36 334-369 232-267 (1141)
223 PF06120 Phage_HK97_TLTM: Tail 76.4 1.2E+02 0.0025 33.4 16.2 57 241-303 45-101 (301)
224 PF14197 Cep57_CLD_2: Centroso 76.3 39 0.00084 29.1 10.1 64 294-361 2-65 (69)
225 PF06005 DUF904: Protein of un 75.8 45 0.00097 29.0 10.4 44 343-386 18-61 (72)
226 KOG1899 LAR transmembrane tyro 75.5 1.1E+02 0.0023 36.8 16.2 34 436-469 228-261 (861)
227 KOG1850 Myosin-like coiled-coi 75.5 1.4E+02 0.003 33.1 35.9 122 252-382 36-175 (391)
228 COG3883 Uncharacterized protei 75.4 1.2E+02 0.0027 32.6 24.3 30 357-386 66-95 (265)
229 COG0497 RecN ATPase involved i 75.3 1.8E+02 0.004 34.5 26.8 18 128-145 52-69 (557)
230 PF06785 UPF0242: Uncharacteri 75.1 1.1E+02 0.0025 33.9 15.5 7 573-579 342-348 (401)
231 PF04012 PspA_IM30: PspA/IM30 74.2 1.1E+02 0.0023 31.3 23.8 44 342-385 22-65 (221)
232 COG4026 Uncharacterized protei 73.7 68 0.0015 33.8 12.8 20 511-530 183-202 (290)
233 TIGR00634 recN DNA repair prot 72.8 2E+02 0.0043 33.8 25.9 19 512-530 346-364 (563)
234 PF12252 SidE: Dot/Icm substra 72.6 2.8E+02 0.0061 35.4 29.2 28 540-567 1297-1324(1439)
235 TIGR01000 bacteriocin_acc bact 72.6 1.8E+02 0.0039 33.1 26.1 23 331-353 160-182 (457)
236 PF10146 zf-C4H2: Zinc finger- 72.1 1E+02 0.0023 32.4 14.1 27 270-296 9-35 (230)
237 PRK15422 septal ring assembly 71.7 63 0.0014 28.7 10.3 49 338-386 20-68 (79)
238 PF10481 CENP-F_N: Cenp-F N-te 71.2 1.6E+02 0.0035 32.0 18.8 73 241-320 15-90 (307)
239 PF08826 DMPK_coil: DMPK coile 70.3 50 0.0011 27.9 9.1 45 278-322 13-57 (61)
240 PF10212 TTKRSYEDQ: Predicted 70.2 89 0.0019 36.6 14.1 58 274-338 439-496 (518)
241 PF00769 ERM: Ezrin/radixin/mo 70.0 1.5E+02 0.0033 31.3 18.0 24 446-469 103-126 (246)
242 PF02841 GBP_C: Guanylate-bind 69.8 1.6E+02 0.0036 31.6 15.9 64 266-329 198-261 (297)
243 TIGR01000 bacteriocin_acc bact 69.8 2E+02 0.0044 32.7 24.3 30 450-479 288-317 (457)
244 PF06008 Laminin_I: Laminin Do 69.5 1.5E+02 0.0033 31.1 30.1 119 338-472 47-165 (264)
245 PF14257 DUF4349: Domain of un 68.1 1.3E+02 0.0028 31.6 14.0 22 509-530 136-157 (262)
246 COG4026 Uncharacterized protei 67.9 52 0.0011 34.6 10.5 81 355-461 133-213 (290)
247 PF12777 MT: Microtubule-bindi 67.6 2E+02 0.0043 31.7 21.1 86 498-584 221-306 (344)
248 PF10186 Atg14: UV radiation r 67.2 1.7E+02 0.0036 30.6 19.7 18 513-530 85-102 (302)
249 TIGR01010 BexC_CtrB_KpsE polys 67.2 1.4E+02 0.0031 32.7 14.7 19 367-385 274-292 (362)
250 KOG4360 Uncharacterized coiled 66.9 2.6E+02 0.0057 32.9 16.7 43 237-279 159-204 (596)
251 COG3074 Uncharacterized protei 66.8 88 0.0019 27.3 10.1 48 339-386 21-68 (79)
252 PF12240 Angiomotin_C: Angiomo 66.8 1.7E+02 0.0036 30.5 15.8 33 372-405 58-90 (205)
253 KOG4807 F-actin binding protei 66.5 2.4E+02 0.0052 32.2 27.3 23 310-332 351-373 (593)
254 PF09738 DUF2051: Double stran 66.2 2.1E+02 0.0045 31.4 18.5 33 543-589 214-246 (302)
255 PRK10698 phage shock protein P 65.9 1.7E+02 0.0038 30.4 24.9 49 338-386 19-67 (222)
256 PF09789 DUF2353: Uncharacteri 65.6 2.2E+02 0.0048 31.5 31.8 45 357-402 72-116 (319)
257 TIGR03017 EpsF chain length de 64.9 2.4E+02 0.0052 31.6 25.8 26 304-329 171-196 (444)
258 PF15035 Rootletin: Ciliary ro 64.7 1.7E+02 0.0036 29.8 16.6 89 272-361 12-113 (182)
259 PF06005 DUF904: Protein of un 64.7 96 0.0021 27.0 11.1 27 561-587 45-71 (72)
260 PF10498 IFT57: Intra-flagella 64.6 2.4E+02 0.0053 31.6 17.6 33 360-392 237-269 (359)
261 KOG0992 Uncharacterized conser 63.7 3E+02 0.0065 32.4 36.6 44 540-583 473-516 (613)
262 KOG1003 Actin filament-coating 63.5 1.9E+02 0.0041 30.0 26.6 35 288-322 9-43 (205)
263 PF10205 KLRAQ: Predicted coil 63.0 1E+02 0.0023 28.7 10.5 68 518-593 4-71 (102)
264 KOG0288 WD40 repeat protein Ti 62.9 2.8E+02 0.0061 31.8 16.3 33 412-444 91-123 (459)
265 PF07889 DUF1664: Protein of u 62.9 1.5E+02 0.0032 28.6 13.2 22 301-322 40-61 (126)
266 PF14988 DUF4515: Domain of un 62.3 2E+02 0.0043 29.8 26.1 26 447-472 178-203 (206)
267 COG4717 Uncharacterized conser 62.3 4E+02 0.0087 33.4 38.2 47 280-333 554-600 (984)
268 PF14197 Cep57_CLD_2: Centroso 61.5 1E+02 0.0023 26.5 9.6 42 341-382 3-44 (69)
269 PF04899 MbeD_MobD: MbeD/MobD 61.3 1.1E+02 0.0023 26.7 9.6 62 308-369 7-68 (70)
270 PRK15178 Vi polysaccharide exp 61.0 1.7E+02 0.0037 33.7 14.1 51 312-366 287-337 (434)
271 COG1842 PspA Phage shock prote 60.9 2.2E+02 0.0048 29.9 22.0 104 428-531 27-139 (225)
272 KOG0288 WD40 repeat protein Ti 60.9 2.9E+02 0.0062 31.7 15.3 39 440-478 35-73 (459)
273 PF10186 Atg14: UV radiation r 60.7 2.2E+02 0.0047 29.8 19.8 15 639-653 253-267 (302)
274 KOG0979 Structural maintenance 60.3 4.6E+02 0.0099 33.4 35.1 21 567-587 893-913 (1072)
275 PF08826 DMPK_coil: DMPK coile 59.9 1.1E+02 0.0023 26.0 9.7 6 317-322 3-8 (61)
276 PF09738 DUF2051: Double stran 58.2 2E+02 0.0043 31.6 13.4 24 315-338 98-121 (302)
277 PF10267 Tmemb_cc2: Predicted 57.7 3.4E+02 0.0073 31.0 16.3 11 376-386 303-313 (395)
278 PRK10803 tol-pal system protei 57.6 63 0.0014 34.4 9.4 48 431-478 53-100 (263)
279 PF15450 DUF4631: Domain of un 57.5 3.8E+02 0.0083 31.6 44.4 44 305-348 100-143 (531)
280 PF03915 AIP3: Actin interacti 56.6 3.6E+02 0.0078 31.0 17.1 79 420-507 208-291 (424)
281 PF15175 SPATA24: Spermatogene 55.5 1.8E+02 0.004 28.8 11.2 41 422-462 46-86 (153)
282 TIGR03752 conj_TIGR03752 integ 55.2 94 0.002 36.0 10.7 38 315-359 102-139 (472)
283 COG4477 EzrA Negative regulato 54.4 4.4E+02 0.0094 31.3 36.4 14 391-404 227-240 (570)
284 PF10226 DUF2216: Uncharacteri 54.2 2.7E+02 0.0058 28.8 12.6 36 280-315 49-87 (195)
285 PLN03229 acetyl-coenzyme A car 54.1 5.1E+02 0.011 32.0 21.3 53 233-289 439-492 (762)
286 PF07798 DUF1640: Protein of u 53.9 2.4E+02 0.0052 28.1 21.5 41 363-407 72-112 (177)
287 TIGR00634 recN DNA repair prot 53.6 4.3E+02 0.0094 31.0 25.6 43 513-560 323-365 (563)
288 PF04582 Reo_sigmaC: Reovirus 52.5 26 0.00056 38.6 5.6 49 283-331 35-83 (326)
289 PF10146 zf-C4H2: Zinc finger- 52.2 3.1E+02 0.0067 28.9 15.5 30 505-534 74-103 (230)
290 KOG0962 DNA repair protein RAD 52.1 6.8E+02 0.015 32.8 39.3 51 281-331 214-264 (1294)
291 PF15294 Leu_zip: Leucine zipp 52.0 3.5E+02 0.0076 29.5 15.7 104 304-413 153-259 (278)
292 PF07889 DUF1664: Protein of u 51.8 2.3E+02 0.005 27.3 13.0 31 308-338 40-70 (126)
293 PLN03188 kinesin-12 family pro 51.5 6.9E+02 0.015 32.7 25.7 12 35-46 472-483 (1320)
294 PRK15422 septal ring assembly 51.2 1.7E+02 0.0038 26.1 9.4 22 566-587 57-78 (79)
295 PF15450 DUF4631: Domain of un 50.8 4.9E+02 0.011 30.8 40.9 44 271-314 166-210 (531)
296 PRK09343 prefoldin subunit bet 50.4 2.2E+02 0.0049 26.8 13.9 39 436-474 4-42 (121)
297 KOG0972 Huntingtin interacting 50.3 3.9E+02 0.0084 29.5 15.6 117 238-361 179-298 (384)
298 KOG1937 Uncharacterized conser 50.3 4.7E+02 0.01 30.5 33.1 12 540-551 508-519 (521)
299 COG1340 Uncharacterized archae 49.8 3.9E+02 0.0084 29.4 36.1 39 545-583 218-256 (294)
300 PF15254 CCDC14: Coiled-coil d 48.4 6.3E+02 0.014 31.4 20.5 20 371-390 469-488 (861)
301 PF05335 DUF745: Protein of un 48.4 3.2E+02 0.007 28.0 16.4 30 305-334 68-97 (188)
302 PRK11519 tyrosine kinase; Prov 48.3 5.8E+02 0.013 31.0 18.3 22 91-112 86-108 (719)
303 TIGR00618 sbcc exonuclease Sbc 48.1 6.9E+02 0.015 31.7 44.6 37 549-585 543-579 (1042)
304 PF09486 HrpB7: Bacterial type 47.9 3E+02 0.0065 27.5 14.5 58 229-286 7-64 (158)
305 PF11932 DUF3450: Protein of u 47.9 3.5E+02 0.0076 28.3 18.9 28 448-475 44-71 (251)
306 PF03962 Mnd1: Mnd1 family; I 47.8 3.1E+02 0.0067 27.9 12.1 30 450-479 66-95 (188)
307 KOG4572 Predicted DNA-binding 47.7 6.6E+02 0.014 31.5 20.1 36 364-399 1009-1044(1424)
308 KOG2077 JNK/SAPK-associated pr 47.0 3.7E+02 0.008 32.2 13.7 71 448-521 352-422 (832)
309 PF15066 CAGE1: Cancer-associa 46.9 5.3E+02 0.012 30.1 27.9 38 283-320 317-354 (527)
310 TIGR03495 phage_LysB phage lys 46.8 2.7E+02 0.0059 27.1 11.0 29 502-530 23-51 (135)
311 KOG1103 Predicted coiled-coil 46.7 4.7E+02 0.01 29.5 23.1 22 327-348 98-119 (561)
312 PRK10361 DNA recombination pro 46.7 5.4E+02 0.012 30.1 25.7 31 364-394 99-129 (475)
313 PF07106 TBPIP: Tat binding pr 46.4 2.2E+02 0.0047 28.0 10.7 48 286-333 112-167 (169)
314 TIGR02977 phageshock_pspA phag 46.2 3.5E+02 0.0076 27.8 21.5 44 342-385 23-66 (219)
315 TIGR02231 conserved hypothetic 46.1 2E+02 0.0043 33.4 11.9 10 393-402 159-168 (525)
316 PF04799 Fzo_mitofusin: fzo-li 45.6 1.3E+02 0.0029 30.4 8.9 66 248-327 102-167 (171)
317 KOG1962 B-cell receptor-associ 45.2 3.9E+02 0.0085 28.1 12.6 49 338-386 160-208 (216)
318 PF06637 PV-1: PV-1 protein (P 44.8 5.3E+02 0.011 29.5 15.1 112 246-360 276-387 (442)
319 KOG2685 Cystoskeletal protein 44.0 5.5E+02 0.012 29.5 20.6 62 300-361 256-317 (421)
320 PF06785 UPF0242: Uncharacteri 43.8 5.2E+02 0.011 29.1 19.7 41 427-467 182-222 (401)
321 KOG4403 Cell surface glycoprot 43.5 3.2E+02 0.0069 31.6 12.3 25 225-250 97-121 (575)
322 PF07058 Myosin_HC-like: Myosi 43.5 3.3E+02 0.0071 30.2 11.9 74 544-642 62-138 (351)
323 PF05700 BCAS2: Breast carcino 43.3 4E+02 0.0086 27.6 13.0 60 287-353 133-192 (221)
324 TIGR03752 conj_TIGR03752 integ 43.0 1.9E+02 0.0042 33.6 10.8 19 568-586 122-140 (472)
325 PF12329 TMF_DNA_bd: TATA elem 42.5 2.1E+02 0.0045 24.9 8.6 20 253-272 10-29 (74)
326 PF11932 DUF3450: Protein of u 42.0 4.3E+02 0.0093 27.6 17.3 40 278-317 37-76 (251)
327 KOG0979 Structural maintenance 41.8 8.6E+02 0.019 31.1 32.9 49 313-365 176-224 (1072)
328 KOG0163 Myosin class VI heavy 41.6 8E+02 0.017 30.6 16.2 79 241-322 865-964 (1259)
329 PF10226 DUF2216: Uncharacteri 41.5 4.2E+02 0.0091 27.4 15.2 42 413-454 18-63 (195)
330 PF10234 Cluap1: Clusterin-ass 41.4 4.9E+02 0.011 28.2 14.4 28 344-371 191-218 (267)
331 PF06657 Cep57_MT_bd: Centroso 41.2 1.8E+02 0.0038 25.7 8.0 55 510-567 22-76 (79)
332 PF11365 DUF3166: Protein of u 40.6 3E+02 0.0065 25.4 10.3 42 435-476 4-45 (96)
333 PF12240 Angiomotin_C: Angiomo 40.6 4.5E+02 0.0097 27.4 15.3 28 333-360 61-88 (205)
334 KOG3457 Sec61 protein transloc 40.2 21 0.00046 32.0 2.2 17 657-673 68-84 (88)
335 COG3074 Uncharacterized protei 40.1 1.7E+02 0.0038 25.6 7.5 11 342-352 66-76 (79)
336 PF04582 Reo_sigmaC: Reovirus 39.9 46 0.00099 36.8 5.1 9 391-399 145-153 (326)
337 PRK11519 tyrosine kinase; Prov 39.1 7.9E+02 0.017 29.9 22.5 27 561-587 369-395 (719)
338 PF08232 Striatin: Striatin fa 38.8 2.1E+02 0.0046 27.5 9.0 57 401-471 15-71 (134)
339 COG3206 GumC Uncharacterized p 38.8 6.4E+02 0.014 28.7 25.7 21 568-588 379-399 (458)
340 TIGR02449 conserved hypothetic 38.7 1.7E+02 0.0037 25.2 7.2 38 267-304 5-42 (65)
341 KOG0860 Synaptobrevin/VAMP-lik 38.0 86 0.0019 29.8 5.9 49 628-677 66-114 (116)
342 KOG3850 Predicted membrane pro 37.9 6.7E+02 0.015 28.7 19.7 28 179-206 187-214 (455)
343 smart00502 BBC B-Box C-termina 37.7 3E+02 0.0064 24.5 15.0 30 281-310 5-34 (127)
344 PF12329 TMF_DNA_bd: TATA elem 37.5 2.8E+02 0.006 24.1 10.3 23 510-532 3-25 (74)
345 PF04880 NUDE_C: NUDE protein, 37.4 47 0.001 33.3 4.4 21 434-454 2-22 (166)
346 TIGR02971 heterocyst_DevB ABC 36.9 5.5E+02 0.012 27.4 19.8 21 458-478 184-204 (327)
347 PF12795 MscS_porin: Mechanose 36.9 5E+02 0.011 26.9 24.1 132 421-575 81-212 (240)
348 PRK10929 putative mechanosensi 36.8 1.1E+03 0.023 30.7 49.5 31 552-582 380-410 (1109)
349 KOG2685 Cystoskeletal protein 36.8 7.1E+02 0.015 28.7 32.1 45 315-359 143-187 (421)
350 PRK06975 bifunctional uroporph 36.7 5.3E+02 0.012 31.2 13.8 50 281-334 376-425 (656)
351 KOG2264 Exostosin EXT1L [Signa 36.5 2.8E+02 0.0061 33.1 10.7 38 546-583 112-149 (907)
352 KOG1103 Predicted coiled-coil 36.3 6.8E+02 0.015 28.3 24.8 38 495-532 249-286 (561)
353 PF12808 Mto2_bdg: Micro-tubul 36.2 91 0.002 25.7 5.0 44 311-354 4-47 (52)
354 PF13870 DUF4201: Domain of un 36.1 4.4E+02 0.0095 26.0 23.2 15 369-383 47-61 (177)
355 PRK09841 cryptic autophosphory 36.0 8.8E+02 0.019 29.5 19.2 24 277-300 268-291 (726)
356 PF06008 Laminin_I: Laminin Do 36.0 5.4E+02 0.012 27.1 29.0 61 253-313 50-110 (264)
357 PF02403 Seryl_tRNA_N: Seryl-t 35.7 2.8E+02 0.0061 25.0 8.9 26 309-334 34-59 (108)
358 COG1382 GimC Prefoldin, chaper 35.7 4E+02 0.0088 25.5 13.2 95 491-592 13-107 (119)
359 PF06156 DUF972: Protein of un 35.2 1.6E+02 0.0034 27.5 7.2 46 544-589 11-56 (107)
360 PF07989 Microtub_assoc: Micro 35.0 3.1E+02 0.0067 24.0 9.5 67 335-402 6-73 (75)
361 PF12004 DUF3498: Domain of un 34.7 13 0.00028 43.1 0.0 47 320-366 410-456 (495)
362 PF02403 Seryl_tRNA_N: Seryl-t 34.6 3.2E+02 0.0068 24.7 9.0 62 508-574 39-100 (108)
363 PF06120 Phage_HK97_TLTM: Tail 34.6 6.6E+02 0.014 27.7 18.4 88 496-583 72-169 (301)
364 COG3206 GumC Uncharacterized p 34.5 7.4E+02 0.016 28.2 27.3 20 87-106 77-96 (458)
365 PF15372 DUF4600: Domain of un 34.5 4.4E+02 0.0096 25.6 10.7 65 511-592 14-88 (129)
366 KOG4460 Nuclear pore complex, 34.0 5E+02 0.011 31.0 12.2 125 270-395 597-721 (741)
367 PF01920 Prefoldin_2: Prefoldi 33.9 3.3E+02 0.0072 24.0 11.6 26 447-472 6-31 (106)
368 PRK10803 tol-pal system protei 33.7 2.2E+02 0.0047 30.4 8.9 41 329-369 54-94 (263)
369 COG1382 GimC Prefoldin, chaper 33.6 4.4E+02 0.0095 25.3 13.9 43 431-473 69-111 (119)
370 COG5185 HEC1 Protein involved 33.2 8.7E+02 0.019 28.6 40.5 102 281-382 269-386 (622)
371 PF06716 DUF1201: Protein of u 32.7 61 0.0013 26.1 3.4 26 657-682 17-44 (54)
372 PF02994 Transposase_22: L1 tr 31.9 1.4E+02 0.003 33.4 7.5 12 375-386 162-173 (370)
373 PRK13169 DNA replication intia 31.8 2E+02 0.0042 27.2 7.2 45 544-588 11-55 (110)
374 PRK13729 conjugal transfer pil 31.7 1.6E+02 0.0035 34.2 8.0 15 303-317 75-89 (475)
375 PF08581 Tup_N: Tup N-terminal 31.6 3.7E+02 0.008 23.8 11.6 14 517-530 62-75 (79)
376 PF06770 Arif-1: Actin-rearran 31.6 49 0.0011 34.1 3.5 29 647-675 163-191 (196)
377 PF12252 SidE: Dot/Icm substra 31.6 1.3E+03 0.028 30.0 19.3 19 449-467 1066-1084(1439)
378 KOG1962 B-cell receptor-associ 31.6 3.8E+02 0.0082 28.2 9.9 13 357-369 193-205 (216)
379 PRK00409 recombination and DNA 31.2 1.1E+03 0.024 29.2 17.5 24 125-148 253-276 (782)
380 PF04304 DUF454: Protein of un 30.8 1.1E+02 0.0024 25.7 5.0 47 625-671 22-69 (71)
381 TIGR02132 phaR_Bmeg polyhydrox 30.7 6.1E+02 0.013 26.1 10.8 21 544-564 153-173 (189)
382 PF05529 Bap31: B-cell recepto 30.3 2.8E+02 0.0061 27.7 8.7 33 544-583 157-189 (192)
383 TIGR02977 phageshock_pspA phag 30.2 6.2E+02 0.014 26.0 26.1 51 342-392 30-80 (219)
384 PF11802 CENP-K: Centromere-as 30.1 7.5E+02 0.016 26.9 17.6 41 251-291 30-71 (268)
385 KOG0993 Rab5 GTPase effector R 29.8 9.3E+02 0.02 27.9 25.0 59 280-338 303-365 (542)
386 COG4467 Regulator of replicati 29.6 1.8E+02 0.004 27.4 6.5 44 544-587 11-54 (114)
387 PF15358 TSKS: Testis-specific 29.6 6.8E+02 0.015 28.9 11.9 35 348-382 179-213 (558)
388 PF08172 CASP_C: CASP C termin 29.5 4E+02 0.0087 28.4 10.0 33 287-319 3-35 (248)
389 PF04102 SlyX: SlyX; InterPro 29.1 2.7E+02 0.0059 23.7 7.1 34 286-319 7-40 (69)
390 KOG2077 JNK/SAPK-associated pr 29.1 7.3E+02 0.016 29.9 12.4 61 323-383 316-376 (832)
391 PF08657 DASH_Spc34: DASH comp 29.0 1.8E+02 0.0038 31.3 7.3 78 496-573 178-257 (259)
392 TIGR02338 gimC_beta prefoldin, 28.9 4.6E+02 0.0099 24.1 13.5 25 506-530 75-99 (110)
393 PF08232 Striatin: Striatin fa 28.8 1.8E+02 0.0038 28.1 6.6 44 286-329 28-71 (134)
394 COG5185 HEC1 Protein involved 28.4 1E+03 0.023 28.0 36.7 40 630-671 559-598 (622)
395 PF08409 DUF1736: Domain of un 28.3 61 0.0013 28.8 3.1 22 652-673 21-42 (80)
396 TIGR02894 DNA_bind_RsfA transc 27.9 2.5E+02 0.0055 28.2 7.6 42 286-327 100-141 (161)
397 PF11180 DUF2968: Protein of u 27.7 7E+02 0.015 25.8 12.3 30 285-314 107-136 (192)
398 PF09766 FimP: Fms-interacting 27.4 9E+02 0.019 27.0 13.7 42 432-473 12-53 (355)
399 PF12795 MscS_porin: Mechanose 27.4 7.1E+02 0.015 25.8 24.9 16 305-320 39-54 (240)
400 PF14282 FlxA: FlxA-like prote 27.2 4.3E+02 0.0093 24.4 8.6 54 512-583 19-72 (106)
401 TIGR01069 mutS2 MutS2 family p 27.1 1.2E+03 0.026 28.9 14.8 24 125-148 248-271 (771)
402 KOG2391 Vacuolar sorting prote 27.1 3.3E+02 0.0071 30.5 8.9 68 309-376 219-286 (365)
403 PF04012 PspA_IM30: PspA/IM30 27.0 6.8E+02 0.015 25.4 22.3 51 342-392 29-79 (221)
404 KOG3894 SNARE protein Syntaxin 26.6 72 0.0016 35.0 3.9 34 644-677 282-315 (316)
405 TIGR02449 conserved hypothetic 26.5 4.2E+02 0.0091 22.8 8.7 27 360-386 24-50 (65)
406 KOG3385 V-SNARE [Intracellular 26.0 55 0.0012 31.1 2.5 31 540-570 24-54 (118)
407 PRK14011 prefoldin subunit alp 25.9 6.4E+02 0.014 24.7 12.8 38 544-581 91-128 (144)
408 PRK00106 hypothetical protein; 25.7 1.2E+03 0.026 27.8 24.7 6 315-320 87-92 (535)
409 KOG2010 Double stranded RNA bi 25.7 6.4E+02 0.014 28.3 10.7 30 546-578 341-370 (405)
410 PRK11578 macrolide transporter 25.5 4.9E+02 0.011 28.6 10.3 22 458-479 111-132 (370)
411 TIGR01069 mutS2 MutS2 family p 25.5 1.4E+03 0.03 28.4 16.8 6 648-653 743-748 (771)
412 TIGR03495 phage_LysB phage lys 25.4 4E+02 0.0087 26.0 8.3 34 248-281 23-56 (135)
413 KOG3385 V-SNARE [Intracellular 25.4 2.7E+02 0.0058 26.7 6.8 23 655-677 94-116 (118)
414 COG1566 EmrA Multidrug resista 25.3 1E+03 0.022 26.8 14.5 119 430-580 89-208 (352)
415 PF04728 LPP: Lipoprotein leuc 25.3 4.1E+02 0.0089 22.3 7.3 36 342-377 9-44 (56)
416 PF04375 HemX: HemX; InterPro 25.2 8.1E+02 0.018 27.4 12.0 11 324-334 124-134 (372)
417 PF06428 Sec2p: GDP/GTP exchan 25.1 1.1E+02 0.0023 28.3 4.2 33 301-333 5-37 (100)
418 KOG4196 bZIP transcription fac 25.1 6.6E+02 0.014 24.6 10.3 32 449-480 84-115 (135)
419 PRK02793 phi X174 lysis protei 25.0 4.1E+02 0.0089 23.0 7.5 34 286-319 11-44 (72)
420 PF05791 Bacillus_HBL: Bacillu 24.9 6.7E+02 0.015 25.2 10.3 51 304-354 124-174 (184)
421 PF15188 CCDC-167: Coiled-coil 24.7 3.4E+02 0.0073 24.5 7.1 64 453-523 5-68 (85)
422 KOG2629 Peroxisomal membrane a 24.7 6.9E+02 0.015 27.5 10.7 45 294-338 119-163 (300)
423 PF11180 DUF2968: Protein of u 24.6 8E+02 0.017 25.4 13.1 38 493-530 149-186 (192)
424 PRK02119 hypothetical protein; 24.4 4.5E+02 0.0098 22.8 7.7 33 286-318 12-44 (73)
425 PF12761 End3: Actin cytoskele 24.4 3.6E+02 0.0077 28.0 8.2 20 278-297 98-117 (195)
426 PF04799 Fzo_mitofusin: fzo-li 24.3 4.8E+02 0.01 26.5 8.9 19 315-333 102-120 (171)
427 PF04949 Transcrip_act: Transc 24.3 7.3E+02 0.016 24.8 18.3 40 346-385 87-126 (159)
428 smart00806 AIP3 Actin interact 24.2 1.2E+03 0.025 27.1 25.1 13 494-506 282-294 (426)
429 PF03961 DUF342: Protein of un 24.1 4.9E+02 0.011 29.7 10.2 29 503-531 380-408 (451)
430 KOG4603 TBP-1 interacting prot 24.1 4.7E+02 0.01 26.8 8.7 37 346-382 82-118 (201)
431 PF12761 End3: Actin cytoskele 23.9 6.5E+02 0.014 26.1 9.9 22 546-567 172-193 (195)
432 TIGR00414 serS seryl-tRNA synt 23.8 5.3E+02 0.012 29.3 10.4 30 305-334 31-60 (418)
433 TIGR02894 DNA_bind_RsfA transc 23.7 5.5E+02 0.012 25.8 9.1 30 501-530 107-136 (161)
434 PF05266 DUF724: Protein of un 23.7 8E+02 0.017 25.1 13.6 10 241-250 63-72 (190)
435 PRK13729 conjugal transfer pil 23.5 2.9E+02 0.0063 32.2 8.1 14 388-401 106-119 (475)
436 PF11365 DUF3166: Protein of u 23.5 5.8E+02 0.013 23.6 8.5 90 285-374 3-93 (96)
437 PF06428 Sec2p: GDP/GTP exchan 23.4 1.6E+02 0.0035 27.2 5.0 59 341-400 20-79 (100)
438 PRK00295 hypothetical protein; 23.4 4.7E+02 0.01 22.3 8.1 36 285-320 7-42 (68)
439 PF12777 MT: Microtubule-bindi 23.4 1E+03 0.022 26.2 22.2 30 551-580 231-260 (344)
440 smart00502 BBC B-Box C-termina 23.4 5.3E+02 0.011 22.9 14.0 88 496-583 5-93 (127)
441 PF09753 Use1: Membrane fusion 23.4 2.1E+02 0.0045 30.0 6.6 26 555-580 155-181 (251)
442 PF12808 Mto2_bdg: Micro-tubul 23.2 2.1E+02 0.0046 23.5 5.1 43 395-437 6-48 (52)
443 PF02183 HALZ: Homeobox associ 23.0 2.3E+02 0.005 22.5 5.1 16 514-529 21-36 (45)
444 PLN02678 seryl-tRNA synthetase 22.9 5.4E+02 0.012 29.8 10.2 28 307-334 36-63 (448)
445 PF13747 DUF4164: Domain of un 22.8 5.6E+02 0.012 23.0 12.3 40 342-381 38-77 (89)
446 PLN02678 seryl-tRNA synthetase 22.8 5.8E+02 0.013 29.5 10.4 30 628-657 143-176 (448)
447 COG4985 ABC-type phosphate tra 22.8 9.7E+02 0.021 25.7 11.4 45 436-480 161-206 (289)
448 PF10482 CtIP_N: Tumour-suppre 22.7 6.9E+02 0.015 24.0 13.1 32 283-314 35-66 (120)
449 PF03962 Mnd1: Mnd1 family; I 22.6 8.2E+02 0.018 24.8 14.0 14 390-403 80-93 (188)
450 PF07028 DUF1319: Protein of u 22.6 7.2E+02 0.016 24.1 9.4 22 511-532 59-80 (126)
451 PF05781 MRVI1: MRVI1 protein; 22.4 2.1E+02 0.0045 33.8 6.8 21 315-335 210-230 (538)
452 PF09889 DUF2116: Uncharacteri 22.1 98 0.0021 26.0 3.1 20 656-675 37-56 (59)
453 TIGR03794 NHPM_micro_HlyD NHPM 22.1 1.1E+03 0.025 26.3 21.3 24 454-477 228-251 (421)
454 TIGR03545 conserved hypothetic 22.1 1.3E+03 0.029 27.5 13.4 105 318-423 164-270 (555)
455 PF04912 Dynamitin: Dynamitin 21.8 1.1E+03 0.025 26.2 18.7 61 343-403 209-278 (388)
456 PF07099 DUF1361: Protein of u 21.7 1.4E+02 0.003 29.7 4.6 46 631-676 109-161 (168)
457 PF03961 DUF342: Protein of un 21.6 6.8E+02 0.015 28.6 10.7 37 545-581 372-408 (451)
458 PF10805 DUF2730: Protein of u 21.4 6.5E+02 0.014 23.2 10.5 17 305-321 43-59 (106)
459 COG1729 Uncharacterized protei 21.4 8.9E+02 0.019 26.2 10.8 29 628-656 142-175 (262)
460 cd00584 Prefoldin_alpha Prefol 21.3 5.9E+02 0.013 23.6 8.6 34 494-527 90-123 (129)
461 PF09763 Sec3_C: Exocyst compl 21.3 1.5E+03 0.032 27.4 15.5 16 421-436 120-135 (701)
462 PF15290 Syntaphilin: Golgi-lo 21.1 1.1E+03 0.024 25.9 14.8 48 266-331 62-109 (305)
463 PF12004 DUF3498: Domain of un 21.1 32 0.00069 40.0 0.0 55 271-325 396-454 (495)
464 PRK04325 hypothetical protein; 20.8 5.6E+02 0.012 22.2 7.7 29 285-313 11-39 (74)
465 cd00632 Prefoldin_beta Prefold 20.8 6.3E+02 0.014 22.8 12.6 92 441-532 1-104 (105)
466 PF05529 Bap31: B-cell recepto 20.7 6E+02 0.013 25.4 9.0 38 554-591 153-190 (192)
467 KOG1655 Protein involved in va 20.7 9.8E+02 0.021 25.0 15.2 27 446-472 26-52 (218)
468 PF04728 LPP: Lipoprotein leuc 20.6 4.8E+02 0.01 21.9 6.6 31 448-478 12-42 (56)
469 PRK04406 hypothetical protein; 20.5 5.8E+02 0.013 22.3 8.2 19 286-304 14-32 (75)
470 PF03261 CDK5_activator: Cycli 20.5 69 0.0015 35.6 2.4 26 657-682 250-291 (346)
471 COG4913 Uncharacterized protei 20.4 1.7E+03 0.038 27.8 28.4 46 435-480 694-739 (1104)
472 PF14992 TMCO5: TMCO5 family 20.4 1.1E+03 0.025 25.7 15.8 23 422-444 74-96 (280)
473 PF00901 Orbi_VP5: Orbivirus o 20.3 1.5E+03 0.032 26.9 19.9 67 342-408 139-205 (508)
474 PF04576 Zein-binding: Zein-bi 20.1 7E+02 0.015 23.0 12.9 54 391-444 11-64 (94)
475 COG4477 EzrA Negative regulato 20.0 1.5E+03 0.033 27.0 39.0 34 308-341 201-234 (570)
476 PF06632 XRCC4: DNA double-str 20.0 1.1E+03 0.023 26.5 11.4 12 546-557 192-203 (342)
477 PRK05431 seryl-tRNA synthetase 20.0 6.6E+02 0.014 28.7 10.1 28 307-334 31-58 (425)
478 PLN02320 seryl-tRNA synthetase 20.0 9.8E+02 0.021 28.3 11.5 148 498-668 93-248 (502)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=100.00 E-value=5e-34 Score=320.59 Aligned_cols=373 Identities=25% Similarity=0.306 Sum_probs=248.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 270 KEARLARVCAGLSSRLQEYKSENAQLEEL----LV----------AERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (686)
Q Consensus 270 ke~qLav~~~RLrk~~qel~~~~aqLEe~----~~----------el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~ 335 (686)
..+++++++++|.+..+|++....+++++ .+ ......+.|+.++..++.++.+.+.++..+...|.
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl 186 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL 186 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 34599999999999999999999999986 11 11223488899999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
Q 005641 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM-------ESIMRNREL---TETRMIQALREELASVERRAEE- 404 (686)
Q Consensus 336 ~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~-------~~L~qel~~---~ekRilqsLe~eLkslq~~lEq- 404 (686)
++...++..++.|..+..++. .+........+++... +....++.. ++.+|++++++.|.+|+.+...
T Consensus 187 ~rtl~~e~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~ 265 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE 265 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 999999999999999999554 4555554444444433 334444444 3778999999999999983322
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005641 405 ERAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (686)
Q Consensus 405 E~~aHs~-Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e 483 (686)
....+.. ...+.+.. +...+.+-+..++..+.+.+.++.+.+.+.. .+...+++..+.+..........
T Consensus 266 ~~~~~~~~~el~~l~~------E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~- 335 (511)
T PF09787_consen 266 GFDSSTNSIELEELKQ------ERDHLQEEIQLLERQIEQLRAELQDLEAQLE---GEQESFREQPQELSQQLEPELTT- 335 (511)
T ss_pred ccccccchhcchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhch-
Confidence 1221111 11222222 2222222222333333333222222222211 11222222222222211111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005641 484 PEEANQAIQMQAWQDEVERARQGQ----RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559 (686)
Q Consensus 484 ~~~a~qv~~lk~Lq~EL~~lR~~~----~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~Lie 559 (686)
+ ..++.+..|+.+++... ..+..++...+.|+++|+.++.+ .. +.....+||.||+.||+.|++
T Consensus 336 --e----~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~-----~~-~~s~~~elE~rl~~lt~~Li~ 403 (511)
T PF09787_consen 336 --E----AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA-----RA-SSSSWNELESRLTQLTESLIQ 403 (511)
T ss_pred --H----HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-----Hh-ccCCcHhHHHHHhhccHHHHH
Confidence 0 12234455555555432 34456888899999999999988 22 334468999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--CCCcccccccccCCCCccccccchhhhHHHHHHhhh
Q 005641 560 KQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKL 637 (686)
Q Consensus 560 KQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~s~~~--~~~~~dd~~~~~l~P~~~~~~~~~~~~~rvk~a~s~ 637 (686)
||++||.|.+||++|.+|||++...+++..+ ..+.+.+. +..+.+|.. .++.|++.+++|+.++++||++|+++
T Consensus 404 KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~---~~~~~~~~~~~~~~~~d~~-~r~~~~~~~~~~d~~~~~r~~~a~~~ 479 (511)
T PF09787_consen 404 KQTQLESLGSEKNALRLQLERLETQLKEEAS---NNRPSSILMKYSNSEDDAE-SRVPLLMKDSPHDIGVARRVKRAASV 479 (511)
T ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHhhcc---CCCCchhhHhhccCCCchh-hhhhhhccCCCccchHHHHHHHHHHH
Confidence 9999999999999999999999999886211 11222222 234444432 23333334567888999999999999
Q ss_pred hhhhHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 005641 638 LDSGAVRATRFLWRYPIARIILLFYLKSFAGI 669 (686)
Q Consensus 638 lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlw 669 (686)
||+|+||+|+||||||++|+||||||++||||
T Consensus 480 iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 480 IDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred HhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=5.4e-30 Score=273.76 Aligned_cols=373 Identities=14% Similarity=0.122 Sum_probs=240.2
Q ss_pred CCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (686)
Q Consensus 245 k~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ 324 (686)
+|+.....-+.+ ..+..++.-..|++|| .+||++..+.++++...||.. .....|+.++..+++.+.+.+
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~ 226 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD 226 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 444444433333 5778889999999999 999999999999999999975 456778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHH---HHHHHHHHHHHHHH
Q 005641 325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES-----IMRNREL---TETRMIQALREELA 396 (686)
Q Consensus 325 ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~-----L~qel~~---~ekRilqsLe~eLk 396 (686)
.++.+++..|..++-.++.++..+.+-+..+...+-..|..+.+.+.-.+. .+++|.+ .+.+|+++.+.
T Consensus 227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k--- 303 (554)
T KOG4677|consen 227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK--- 303 (554)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc---
Confidence 999999999999999999999999999999888888888888777654333 3444444 24455555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Q 005641 397 SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV--------------AMLEVEC 462 (686)
Q Consensus 397 slq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQi--------------s~LE~El 462 (686)
+.-.+.|.|.-+|..- -.-.+++....++......++....+.+.....++.|+ ..|..++
T Consensus 304 stas~~E~ee~rve~~-----~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ 378 (554)
T KOG4677|consen 304 STASRKEFEETRVELP-----FSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFY 378 (554)
T ss_pred chhHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHH
Confidence 1111222222222111 00001111111111111111111111111111111111 1123333
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhh
Q 005641 463 ATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREE 542 (686)
Q Consensus 463 ~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~ 542 (686)
+-+++|.++.+....+.. .....+|-+.+.+|++|..++.. .-. ...
T Consensus 379 ec~~~e~e~~~~~~~r~~---------------------------~~~qski~dk~~el~kl~~~l~~-----r~~-~~s 425 (554)
T KOG4677|consen 379 ECFYHETEAEGTFSSRVN---------------------------LKKQSKIPDKQYELTKLAARLKL-----RAW-NDS 425 (554)
T ss_pred HHHHHHHHHhhhhhhhcc---------------------------chhhccCcchHHHHHHHHHHHHH-----Hhh-hhh
Confidence 333333333333333321 23355677888889999888776 111 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccCCCCccccc
Q 005641 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHR 622 (686)
Q Consensus 543 ~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~s~~~~~~~~dd~~~~~l~P~~~~~~ 622 (686)
...+++..++||+.|++||+++|++..+++.|.++|||++.... +. +-....+++..........+..-.
T Consensus 426 ~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N-~~---------~~v~~~~~~n~~~~~~~~v~~l~~ 495 (554)
T KOG4677|consen 426 VDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN-LV---------EDVDTKLNLNTKFKCHDVVIDLYR 495 (554)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc-cc---------cccceeeccCCCcccccccchHhh
Confidence 47899999999999999999999999999999999999986321 00 000112222211111111111111
Q ss_pred cchhhhHHHHHHhhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhccccC
Q 005641 623 HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVFVA 679 (686)
Q Consensus 623 ~~~~~~~rvk~a~s~lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlwV~~vL~ty~~ 679 (686)
.+.. ..++++|++.+|+++++++.|||+||.||+||++||++|||||||||+|||+
T Consensus 496 d~~~-~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYTP 551 (554)
T KOG4677|consen 496 DLKD-RQQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYTP 551 (554)
T ss_pred hhhh-hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 1122 3789999999999999999999999999999999999999999999999864
No 3
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.82 E-value=4.8e-17 Score=181.65 Aligned_cols=337 Identities=16% Similarity=0.194 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN----LASLQMNMESIMRNRELTETRMIQALREELASVE 399 (686)
Q Consensus 324 Q~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~----ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq 399 (686)
+..+..++....+++...+..+..|+..+..-+.++-..+.. ..--.++...++.++++.++||. -++.+...+.
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~-~lE~e~e~L~ 262 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIV-FLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333444444445555555555555555555545555555544 33444688899999999888744 3455555555
Q ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 400 RRAEEERAAHNATKMAAM----EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (686)
Q Consensus 400 ~~lEqE~~aHs~Tr~eal----~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~e 475 (686)
+.+..-.......+.... ......+.++++|+.-+..++..+.++ ...+..+|+.|+.++.....+|+.++.+
T Consensus 263 ~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e---~e~~~~qI~~le~~l~~~~~~leel~~k 339 (629)
T KOG0963|consen 263 EQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE---REKHKAQISALEKELKAKISELEELKEK 339 (629)
T ss_pred HHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544321111111111111 113357889999999999999888888 6677777777777777777777766665
Q ss_pred HHhh-------------ccCChHH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 476 LKRG-------------QKKSPEE---------------ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (686)
Q Consensus 476 l~r~-------------qk~e~~~---------------a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~q 527 (686)
+... +.++|++ ...+..+++|+.|++.||.....+...+.++..-...+..+
T Consensus 340 L~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~ 419 (629)
T KOG0963|consen 340 LNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAK 419 (629)
T ss_pred HhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHH
Confidence 5543 5566641 01144779999999999987766655544444443333333
Q ss_pred H-------HHhhhhhh----------------------------------------------------ccchhhhhHHHH
Q 005641 528 M-------AAMKRDAE----------------------------------------------------HYSREEHMELEK 548 (686)
Q Consensus 528 l-------e~lk~dle----------------------------------------------------q~ss~~~~eLE~ 548 (686)
. ..+..|+. -+|+.++.+++.
T Consensus 420 ~~~~ke~i~klE~dl~~~~~~~~~~~~~~~~~~~~~~~v~e~s~~~~~p~~~~~~~~s~~l~ii~~qRdrfr~~n~~~e~ 499 (629)
T KOG0963|consen 420 ATEQKELIAKLEQDLLKVQVSPPAEGATARREEGSGQPVPESSIMGGGPSLPNGGVLSRILSVISSQRDRFRARNVELEA 499 (629)
T ss_pred HHHHHHHHHHHHhhHhhcccCCCCCcchhhhcccCCcCCCcccccCCCCCccccccccccchhhhcccchhhhhhhhHHH
Confidence 3 33333331 011566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-C---CCcccccc-----cccCCCCcc
Q 005641 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS-W---SSWEEDAE-----MKSLEPLPL 619 (686)
Q Consensus 549 qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~s~~~-~---~~~~dd~~-----~~~l~P~~~ 619 (686)
+++.+ ...+..|...|+.+.+ ++...|++.||.-.. . +..+.... ..++.|+..
T Consensus 500 ~~r~a--------------~~~~~~l~~el~~~~a---~n~~lyekir~~q~y~~~~~~~~d~e~~y~~~yee~l~p~a~ 562 (629)
T KOG0963|consen 500 QVRLA--------------NDKIGFLESELEKLKA---DNTKLYEKIRYLQSYDGKSGESSDVESQYSAAYEESISPFAS 562 (629)
T ss_pred HHhhc--------------cCchhHHhhhhhhhhc---ccccccccccCccccccCCCCCcchhhhhhhHHHhhcCHHHH
Confidence 88888 8888999999999887 788888888774322 1 11111111 346778766
Q ss_pred ccccchhhhHHHHHHhhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhc-----cccCCCCCC
Q 005641 620 HHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLD-----VFVAPSSGT 684 (686)
Q Consensus 620 ~~~~~~~~~~rvk~a~s~lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlwV~~vL~-----ty~~p~~g~ 684 (686)
|... ...+=.+.++++|++++.+|+|+..+.++|.+||||||+||++|||||+ .|+.|..||
T Consensus 563 f~k~---e~~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~~~~~s~~~~~~~~t 629 (629)
T KOG0963|consen 563 FRKK---ERERKYKRLGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLYLGAASNTMYTPMNT 629 (629)
T ss_pred HHHH---HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 6433 2233455688999999999999999999999999999999999999998 445566554
No 4
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=99.64 E-value=1.7e-15 Score=156.72 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=89.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccC----CCC--------
Q 005641 540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV----SRR----SWS-------- 603 (686)
Q Consensus 540 s~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~----s~~----~~~-------- 603 (686)
+.++.+||.+++.+ ..++..|+.+++.+.+ +|.++||+.|| .+. ..+
T Consensus 92 R~Rn~ELE~elr~~--------------~~~~~~L~~Ev~~L~~---DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~ 154 (248)
T PF08172_consen 92 RQRNAELEEELRKQ--------------QQTISSLRREVESLRA---DNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGR 154 (248)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCcccccCCCcccccCCCCc
Confidence 56677777777777 7778888888888887 89999999997 210 000
Q ss_pred ---------Cccccc-c-----cccCCCCccccccchhhhHHHHHHhhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 005641 604 ---------SWEEDA-E-----MKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAG 668 (686)
Q Consensus 604 ---------~~~dd~-~-----~~~l~P~~~~~~~~~~~~~rvk~a~s~lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHl 668 (686)
+.|.+. . ..++.|+..|+.. ...|..+.++++|++++.+|+|+..++++|+|||||||+||+
T Consensus 155 ~~~~~~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~---E~~R~~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~ 231 (248)
T PF08172_consen 155 SSVSPEPGGSSDVESNRYSSAYEESLNPFAAFRKR---ERQRRYKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHL 231 (248)
T ss_pred ccCCCCCCCCCchhHHHHHHHHHhccChHHHHhHh---hHHHHHhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 011111 1 2457776666543 666668889999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 005641 669 ICTSLLDV 676 (686)
Q Consensus 669 wV~~vL~t 676 (686)
||||+|+.
T Consensus 232 lvf~~l~~ 239 (248)
T PF08172_consen 232 LVFFVLYY 239 (248)
T ss_pred HHHHHHHH
Confidence 99999986
No 5
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.41 E-value=1.6e-10 Score=136.95 Aligned_cols=311 Identities=14% Similarity=0.136 Sum_probs=217.9
Q ss_pred hhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (686)
Q Consensus 239 ~~~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~ 318 (686)
..-.++|.+++.++|++++..++++++. +.+|++...++.++..++++..+.+.++++.|+..+..+-.
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~ 602 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK 602 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999996 99999999999999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 005641 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR-MIQALREELAS 397 (686)
Q Consensus 319 eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR-ilqsLe~eLks 397 (686)
+...++......... .......+.+|+.+++.++......+..+.+++..++...+.++++++. +..-++.+++.
T Consensus 603 ~~~~~~~~~e~~~~~----~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~ 678 (1317)
T KOG0612|consen 603 ENKKLRSELEKERRQ----RTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678 (1317)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444433332 2333677788888888888888888888888888777888888888773 34448899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ 470 (686)
Q Consensus 398 lq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~-------~ea~eLeeQis~LE~El~qlKQELq 470 (686)
+++.++++..+|..+ ++..+ ++.+.++...+.+++ +.+.+...++++|.+++.+.++.+.
T Consensus 679 ~q~~~eq~~~E~~~~--~L~~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 679 LQNELEQENAEHHRL--RLQDK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHHHHHHHHH--HHhhH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 999999999999988 33333 334455555555554 4466788899999999999888888
Q ss_pred HHHHHHHhhccCChHHHHHHH-----------H-------------HHHHHHHHHHHHhhHHHHHHHHHHHHH-------
Q 005641 471 DMEARLKRGQKKSPEEANQAI-----------Q-------------MQAWQDEVERARQGQRDAENKLSSLEA------- 519 (686)
Q Consensus 471 ~le~el~r~qk~e~~~a~qv~-----------~-------------lk~Lq~EL~~lR~~~~~lEekL~~le~------- 519 (686)
++++..............++. . .+++++++..++..++.++.++..+..
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~ 825 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWG 825 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 777666655422221111100 1 122233333333333333322222221
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 520 El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
.+..++.++++ +++++ ..+.+++.+..+...+|. +.+..|+-.+..|.+...+..+.+
T Consensus 826 ~~k~lq~~lea-----e~~~~---~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~ 883 (1317)
T KOG0612|consen 826 QMKELQDQLEA-----EQCFS---SLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE 883 (1317)
T ss_pred hhHHHHHHHHH-----HHHHH---HHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence 12333333333 45555 788999999999988887 777888888888888766665555
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.73 E-value=0.00034 Score=89.37 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (686)
Q Consensus 259 ~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~e 304 (686)
++..+..+...+-..|..--..+++....|.+....+|+.++.+.+
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQD 999 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454555555555666777777777777776665555
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=0.00065 Score=83.32 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005641 286 QEYKSENAQL 295 (686)
Q Consensus 286 qel~~~~aqL 295 (686)
.++..+...+
T Consensus 194 ~~L~~q~~~l 203 (1164)
T TIGR02169 194 DEKRQQLERL 203 (1164)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.70 E-value=0.00033 Score=89.41 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLET 566 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~ 566 (686)
..++++.+.|...|.+=+..++.
T Consensus 1121 ~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1121 AKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 9
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.67 E-value=0.00086 Score=79.10 Aligned_cols=273 Identities=18% Similarity=0.251 Sum_probs=141.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK 357 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~q 357 (686)
+.+|++ +..++.++.|+++- -+.+-.+...||++|.+.+.+.++.+.- .+ ....+..++...|..+.-
T Consensus 251 k~Kl~E-lekmkiqleqlqEf-------kSkim~qqa~Lqrel~raR~e~keaqe~-ke---~~k~emad~ad~iEmaTl 318 (1243)
T KOG0971|consen 251 KAKLKE-LEKMKIQLEQLQEF-------KSKIMEQQADLQRELKRARKEAKEAQEA-KE---RYKEEMADTADAIEMATL 318 (1243)
T ss_pred HHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHh
Confidence 555554 33455555555542 3334445556677776666555554432 12 224555677766665555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005641 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (686)
Q Consensus 358 el~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~l 437 (686)
+-....++.+.+|.|...+++++..++.. +.-|..++. +.. .. ....-.-....||..|+.|-.++.++
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletd-lEILKaEme---ekG---~~----~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETD-LEILKAEME---EKG---SD----GQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---hcC---CC----CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 55555677777888888887777777765 333333221 110 00 00000122356788888888888888
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH--HHH-HH-----------HHHHH
Q 005641 438 QRIADERTAKA-------GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE--ANQ-AI-----------QMQAW 496 (686)
Q Consensus 438 QrkL~Ee~~ea-------~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~--a~q-v~-----------~lk~L 496 (686)
++-..+++... .-+...+..|...-+.|+.+++.++..+..+++-+-.. |+. |. ..+.|
T Consensus 388 RDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklL 467 (1243)
T KOG0971|consen 388 RDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLL 467 (1243)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHH
Confidence 87766665222 22222233344444555566666665555554322110 111 11 22445
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 497 QDEVERARQGQRDAENKLSSLEAE-VQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (686)
Q Consensus 497 q~EL~~lR~~~~~lEekL~~le~E-l~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~ 575 (686)
..++..+.. .+++.+.|.+-..| ...||.++..++. .. .++.+|++.-.+.++..+..|-.+..-..-|.
T Consensus 468 eetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g-------~~-kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 468 EETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKG-------AR-KELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555554432 22222333333222 3345555544221 22 67777777777777777777766666666666
Q ss_pred HHHHHHH
Q 005641 576 FQLEKEM 582 (686)
Q Consensus 576 ~qLErl~ 582 (686)
-||..+.
T Consensus 539 dqlqe~~ 545 (1243)
T KOG0971|consen 539 DQLQELT 545 (1243)
T ss_pred HHHHHHH
Confidence 6665544
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.66 E-value=0.0017 Score=79.51 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005641 551 RELTDLL 557 (686)
Q Consensus 551 r~Lte~L 557 (686)
..+...+
T Consensus 464 ~~l~~~~ 470 (1179)
T TIGR02168 464 EELREEL 470 (1179)
T ss_pred HHHHHHH
Confidence 3333333
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.0034 Score=71.92 Aligned_cols=76 Identities=25% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
.+++-+++-..+-++|+.++...+. +++.--.+....|.+|.-.|--=|..-|.|..|+..|..-+++|+.+++..
T Consensus 382 ~~e~~lqEer~E~qkL~~ql~ke~D----~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 382 MLEEHLQEERMERQKLEKQLGKEKD----CNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555666666654221 111111222233333333333334455667778888888888888777664
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.56 E-value=0.0054 Score=74.09 Aligned_cols=7 Identities=43% Similarity=0.378 Sum_probs=2.7
Q ss_pred ccccccc
Q 005641 138 VEIPETF 144 (686)
Q Consensus 138 ~~~~~~~ 144 (686)
+.|...+
T Consensus 68 ~~v~~~f 74 (880)
T PRK02224 68 AEIELWF 74 (880)
T ss_pred EEEEEEE
Confidence 3333333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.55 E-value=0.004 Score=75.19 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk 532 (686)
+..++..++.....++.....+..++.+++.++..+.
T Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 604 AEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555666555543
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=0.0022 Score=81.00 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 005641 250 QDQLDEAQG 258 (686)
Q Consensus 250 qkQlee~~~ 258 (686)
+.++.++..
T Consensus 750 ~~~l~~le~ 758 (1311)
T TIGR00606 750 RNKLQKVNR 758 (1311)
T ss_pred HHHHHHHHH
Confidence 333333333
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.49 E-value=0.008 Score=75.20 Aligned_cols=98 Identities=23% Similarity=0.325 Sum_probs=41.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK-SEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ-~~~~q~esel~~qL~ake~ei~~Le~rL~~l~ 356 (686)
+.|+..-..++..+...|+.. ++.-.+...+++.+..++..+...+ ..+...-..+...+...+..+..+...+....
T Consensus 188 l~~~~~~~~el~~~l~~L~~q-~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQ-AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE 266 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555542 2223344444455554444433211 01111122223333334444444444444444
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 005641 357 KQAALSEGNLASLQMNMESI 376 (686)
Q Consensus 357 qel~~~k~~ls~lqaE~~~L 376 (686)
.++...+..+.++..+...+
T Consensus 267 ~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 267 KEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333
No 16
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.49 E-value=0.0037 Score=76.10 Aligned_cols=185 Identities=20% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh-----
Q 005641 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE----- 363 (686)
Q Consensus 289 ~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k----- 363 (686)
..+..-.++.+.++.++.+.|++.+.+++.+|...|.-....... +.......+.|......+..+....+
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~ 568 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDAGKLRKH 568 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhh
Confidence 344444444455555666666666666666666554333333222 22333444444433333332222211
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005641 364 -----GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE---RAAHNATKMAAMEREVELEHRAAEASMALA 435 (686)
Q Consensus 364 -----~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE---~~aHs~Tr~eal~Re~eLEeEnaeLseAL~ 435 (686)
..+.....+.+-+.+.+..++. .+..|..+.+.++..++.+ ...|.....++-.++.+|++.+-....-+.
T Consensus 569 ~~e~~~~iq~~~e~~~~~~d~l~~le~-~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~ 647 (1317)
T KOG0612|consen 569 SKELSKQIQQELEENRDLEDKLSLLEE-SKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELL 647 (1317)
T ss_pred hhhhhHHHHHHhhccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHH
Confidence 1111111222233333333433 2333444444444444433 333444455555566666666622222222
Q ss_pred HHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 436 RIQRIADERT-AKAGELEQ--KVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 436 ~lQrkL~Ee~-~ea~eLee--Qis~LE~El~qlKQELq~le~el~r~ 479 (686)
.++. +..+. ....+.++ .-..++.+++.+.++++.+..+.+++
T Consensus 648 k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 648 KVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 11111 11222222 11124555666666666666666665
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.48 E-value=0.0017 Score=74.25 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 282 rk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
+....+..+++..|-..+..+...+..|+.++..|+.+|...+....+.+..+ ..+....+.|......+..+...
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~----kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ----KELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555556666677777777777766555444444332 11122333344444444444444
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 005641 362 SEGNLASLQMNMESIMRNR 380 (686)
Q Consensus 362 ~k~~ls~lqaE~~~L~qel 380 (686)
...++..++.+...+.+..
T Consensus 218 ~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.41 E-value=0.0031 Score=75.26 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (686)
Q Consensus 545 eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~ 584 (686)
++..+|.-|.+.|-.|+...+.|.+++.+|+++|+...+.
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555444433
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.37 E-value=0.013 Score=70.16 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005641 541 EEHMELEKRYRELTDLLYYKQTQLETM-------ASEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 541 ~~~~eLE~qlr~Lte~LieKQ~qlE~L-------~sEk~aL~~qLErl~~~~ 585 (686)
.+...|+..+....+..-.-|..||+| ..||+++..++-.+...+
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeL 599 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKEL 599 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566666666666666666555555 457888877777766543
No 20
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.37 E-value=0.012 Score=68.23 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dl 535 (686)
++...||.++.-....++.....+..+|-+|..+.+.++.-.
T Consensus 862 ~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~ 903 (961)
T KOG4673|consen 862 RQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKA 903 (961)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777767777777777777777766433
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.36 E-value=0.024 Score=71.38 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=57.2
Q ss_pred HHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (686)
Q Consensus 258 ~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~q 337 (686)
..+|.+.+-+.....+|.-+..+|..-...+......++.....++++ +..+..++..+...|.+....+..+
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~e~~~~~~~~ 314 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEE-------LNELNEELEKLEDEIKELRDELNKE 314 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555565555666666666666666666666666666544444444 4444444455555555566666666
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALS 362 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~ 362 (686)
+..++..+..+...|..++.+....
T Consensus 315 ~~~~~~~l~~~~~~L~~i~~~~~~y 339 (1201)
T PF12128_consen 315 LSALNADLARIKSELDEIEQQKKDY 339 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655544
No 22
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.35 E-value=0.015 Score=68.39 Aligned_cols=128 Identities=8% Similarity=-0.005 Sum_probs=73.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 005641 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (686)
Q Consensus 274 Lav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~ 353 (686)
+.....++|....++--..-+++..++.||-+|..++..+..||......|+.+++.+-++..--+.+...+.+|.++-.
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 34445667777777777777778878888888888888888888888888888877777664444444444444444433
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 354 ~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
.....-+.++.+-..+..=+..+.+.+++... ....++..++.+...+
T Consensus 163 eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~-en~~le~k~~k~~e~~ 210 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELNEFNMEFQTKLAEANR-EKKALEEKLEKFKEDL 210 (1265)
T ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 33333333333322232222333333333222 2444666666665554
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.34 E-value=0.022 Score=71.47 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~ 586 (686)
+..++..+...+...+..+..+..+...+..++.++.+..+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444445555555555555555555554333
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.28 E-value=0.029 Score=71.65 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~ 360 (686)
|+-.+..|+.....+|. ..-+....++.+++.|+.+|...+..+....+++..=-...+.++......|..+...+.
T Consensus 778 L~~~l~~lQt~~~~~e~---s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~ 854 (1822)
T KOG4674|consen 778 LQLLLDNLQTQKNELEE---SEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELK 854 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333 344455566688889999999988888888888877777778888888888888888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHH
Q 005641 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREEL------------ASVERRAEEERAAHNATKMAAMER---EVELEH 425 (686)
Q Consensus 361 ~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eL------------kslq~~lEqE~~aHs~Tr~eal~R---e~eLEe 425 (686)
.....+..++.+...+...++.+.++ +.+..... .-+...+..+...|..++..+-.. +..++.
T Consensus 855 ~~~~~l~~~~~~~~~le~k~~eL~k~-l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe 933 (1822)
T KOG4674|consen 855 SLLTSLDSVSTNIAKLEIKLSELEKR-LKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQE 933 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888886 33332221 122223444555554444333333 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 426 RAAEASMALARIQRIADERT----AKAGELEQKVAMLEVECATLQQELQDMEARL 476 (686)
Q Consensus 426 EnaeLseAL~~lQrkL~Ee~----~ea~eLeeQis~LE~El~qlKQELq~le~el 476 (686)
....+++++..+...+++-+ +++..+..++..|+.++-.++.++..+..++
T Consensus 934 ~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~ 988 (1822)
T KOG4674|consen 934 EYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL 988 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444443 2333344444444444444444444444433
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=0.015 Score=73.69 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 569 SEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 569 sEk~aL~~qLErl~~~~ 585 (686)
.++..|.-++..+...+
T Consensus 1075 g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1075 GRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555444
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.27 E-value=0.0008 Score=69.70 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=64.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~q 577 (686)
.+|.........++.++..++.++..+...|..+.....++ +.+...|+.+|+.|++.|-+=-..++........|..+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~-~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~ 205 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA-SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKE 205 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666666666666666666655433333 34568899999999999999999999998888889888
Q ss_pred HHHHHHHHHHHHH
Q 005641 578 LEKEMNRLQEVQS 590 (686)
Q Consensus 578 LErl~~~~~~e~~ 590 (686)
+..+...+.....
T Consensus 206 id~le~eL~~~k~ 218 (237)
T PF00261_consen 206 IDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877666544
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.24 E-value=0.012 Score=62.69 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 543 ~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
-..++.+|..+...+.......+.|..-|=+|..++..-..
T Consensus 264 i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 264 IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46777788888888877777778887777777666654433
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.23 E-value=0.023 Score=65.54 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=54.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~q 577 (686)
.++..+++........+..|+.++..++.+|+.+....... .....++-..|++++.+..+=...++....|...+..+
T Consensus 323 ~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~-k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E 401 (522)
T PF05701_consen 323 EELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA-KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEE 401 (522)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333445555555555555555544222111 22235677777788777777777777777788888888
Q ss_pred HHHHHHHHHHHHHH
Q 005641 578 LEKEMNRLQEVQSE 591 (686)
Q Consensus 578 LErl~~~~~~e~~~ 591 (686)
++.....+......
T Consensus 402 ~e~~ka~i~t~E~r 415 (522)
T PF05701_consen 402 AEQTKAAIKTAEER 415 (522)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766665543
No 29
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.19 E-value=0.033 Score=65.63 Aligned_cols=152 Identities=24% Similarity=0.302 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh-
Q 005641 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG- 506 (686)
Q Consensus 428 aeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~- 506 (686)
+.+-.+|.+.++++.--.....+|+++..|+..+..++++.++..+..++++...- +..-.++..++.-+-++.+.
T Consensus 333 adirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~---aerqeQidelKn~if~~e~~~ 409 (1265)
T KOG0976|consen 333 ADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQ---AERQEQIDELKNHIFRLEQGK 409 (1265)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhcc
Confidence 44444444444444444456778999999999999999999999988888864110 11111222222333333222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhccch----hhhhHHHHHHHHHHHHHHHHH---HHHHHH
Q 005641 507 ---------QRDAENKLSSLEAEVQKMRVEMAAMK---RDAEHYSR----EEHMELEKRYRELTDLLYYKQ---TQLETM 567 (686)
Q Consensus 507 ---------~~~lEekL~~le~El~~Lr~qle~lk---~dleq~ss----~~~~eLE~qlr~Lte~LieKQ---~qlE~L 567 (686)
+..+.+++..+..++-.+..|++..+ ...+ .++ ...+++=.+|+.|.+.|.-+- .+++.|
T Consensus 410 ~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~ae-gsrrraIeQcnemv~rir~l~~sle~qrKVeqe~eml 488 (1265)
T KOG0976|consen 410 KDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAE-GSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEML 488 (1265)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhh-hhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHH
Confidence 33334445555555555555555433 0000 010 123677778888888776544 455666
Q ss_pred HHHHHHHHHHHHHHHH
Q 005641 568 ASEKAAAEFQLEKEMN 583 (686)
Q Consensus 568 ~sEk~aL~~qLErl~~ 583 (686)
..+...-..+++-++.
T Consensus 489 Kaen~rqakkiefmkE 504 (1265)
T KOG0976|consen 489 KAENERQAKKIEFMKE 504 (1265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544455554443
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.18 E-value=0.0054 Score=70.34 Aligned_cols=307 Identities=17% Similarity=0.206 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHhhh---------hccchH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 251 DQLDEAQGLLKTTI---------STGQSK---EARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (686)
Q Consensus 251 kQlee~~~~LrsE~---------eal~~k---e~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~ 318 (686)
++|+.-|+.|..++ ++.+-| ++.| +.+++...+-.+..+.+|-.+.-+++-+..|..+....+.
T Consensus 59 R~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El----~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 59 RFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAEL----ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36666677776664 222222 3333 3455666666777777887777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 005641 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-------TETRMIQAL 391 (686)
Q Consensus 319 eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~-------~ekRilqsL 391 (686)
.+...+...... ..++..+++++.-+..++..++.++...+.....+..+...+...+.+ .+.+ ++.|
T Consensus 135 ~~~~~re~~~~~----~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~-~q~L 209 (546)
T KOG0977|consen 135 ERRGAREKLDDY----LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNR-VQTL 209 (546)
T ss_pred HHhhhHHHHHHH----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 766655444433 345666777778888777777777777777766666666666555544 3554 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (686)
Q Consensus 392 e~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~ 471 (686)
..+|.-+++..+.|...-.....+.......-+-. .+|..||.+++... +......+.+|+.
T Consensus 210 leel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~-~eL~~Ai~eiRaqy-----------------e~~~~~nR~diE~ 271 (546)
T KOG0977|consen 210 LEELAFLKRIHKQEIEEERRKARRDTTADNREYFK-NELALAIREIRAQY-----------------EAISRQNRKDIES 271 (546)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH-HHHHHHHHHHHHHH-----------------HHHHHHhHHHHHH
Confidence 66677776666655333222111111000000001 12233333332222 2222333333332
Q ss_pred -HHHHHHhhcc-CCh--HHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHH
Q 005641 472 -MEARLKRGQK-KSP--EEAN-QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546 (686)
Q Consensus 472 -le~el~r~qk-~e~--~~a~-qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eL 546 (686)
++.++.+.+. .+. ...+ ....++.+...+..+|..+.+++.....+.+.|..|+.++..-.+.+ ...-.+.
T Consensus 272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~----e~~L~~k 347 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF----EQALNDK 347 (546)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh----hhhhhhH
Confidence 2333333331 111 1111 23355667777888888888899999999999999999888844433 3344677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 547 E~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
+.++..|.+++-.---.++.|..=+-+|...|..-...+.-+
T Consensus 348 d~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 348 DAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGE 389 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccc
Confidence 888888888888877888888887777777777655544443
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.048 Score=66.75 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~ 589 (686)
..++.-|..+..++.++-+.++.+..+-..+..+|-++..++.+..
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777767777666666554443
No 32
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.13 E-value=0.037 Score=64.32 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=73.2
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005641 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER 419 (686)
Q Consensus 340 ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~R 419 (686)
.-.+.|+-|.+++...+.-+......+..++.|.+.|++-+..++.- --.+..-+..++..+......+...+. +
T Consensus 471 ~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~-Ek~~~E~I~k~~ae~~rq~~~~~~sr~----~ 545 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEET-EKLLQETIEKHQAELTRQKDYYSNSRA----L 545 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHH----H
Confidence 33445555665555554444444456667777766666666655331 111223344444444443333333322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 420 EVELEHRAAEASMALARIQRIADER-TAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 420 e~eLEeEnaeLseAL~~lQrkL~Ee-~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
...||..+..+.+++..+...++.+ +.+-++++++.++|-..+.-|++-|...+..+.+
T Consensus 546 ~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 546 AAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666655333 2445577887777777777777777666655444
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.055 Score=65.38 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~l 531 (686)
+..++..++..+..+...+..++.++..|..+++.+
T Consensus 617 ~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l 652 (880)
T PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455554444444
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.11 E-value=0.0024 Score=75.60 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
|+..+..|..+|.. .++.|.+++.++....+.-..|...|+.++++.+.+..++..+...++.=++.+..+|++
T Consensus 423 LE~dvkkLraeLq~----~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 423 LEADVKKLRAELQS----SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHh----hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555443 567788888888777777778888888888888877777777766666656656666665
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.10 E-value=0.017 Score=66.37 Aligned_cols=268 Identities=19% Similarity=0.278 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLA-----------EALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~-----------~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
..-|+++.|+++-..|+.++.-.+..|...-..+. .-+......+..++..|..+..+++.++.++.+.
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44456666666666666666665555543322211 1111111122333333333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG 449 (686)
Q Consensus 370 qaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~ 449 (686)
+.+......++-....+ +..++.+++.++.+.. .+......|-.+|..|-..+..+...++++..--.
T Consensus 133 ~k~~~~~re~~~~~~~~-l~~leAe~~~~krr~~-----------~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~ 200 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSR-LSELEAEINTLKRRIK-----------ALEDELKRLKAENSRLREELARARKQLDDETLLRV 200 (546)
T ss_pred HHHHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332 3444444444443322 12233445667777888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc----cCChHHHHHHHHHHHHHHHHH----HHHhhHHH-HHHHHHH
Q 005641 450 ELEQKVAMLEVECATLQ----QELQDMEARLKRGQ----KKSPEEANQAIQMQAWQDEVE----RARQGQRD-AENKLSS 516 (686)
Q Consensus 450 eLeeQis~LE~El~qlK----QELq~le~el~r~q----k~e~~~a~qv~~lk~Lq~EL~----~lR~~~~~-lEekL~~ 516 (686)
+++.++++|..++.-++ ++|.+....+.+-- ...|. .....+++.+..+.. ..|...+. +..+|+.
T Consensus 201 d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~-~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~ 279 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK-NELALAIREIRAQYEAISRQNRKDIESWYKRKIQE 279 (546)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888888777766555 77766666665532 01121 111112222221111 11111111 1223444
Q ss_pred HH--------------HHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 005641 517 LE--------------AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL-----------LYYKQTQLETMASEK 571 (686)
Q Consensus 517 le--------------~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~-----------LieKQ~qlE~L~sEk 571 (686)
.. .|+..++..+..++..+-.+ -.++..|+++|..|.-+ |..|.+.+..|..|.
T Consensus 280 i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klsel-E~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec 358 (546)
T KOG0977|consen 280 IRTSAERANVEQNYAREELRRIRSRISGLRAKLSEL-ESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC 358 (546)
T ss_pred HHhhhccccchhHHHHHHHHHHHhcccchhhhhccc-cccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 43 33444444443333111000 12345566666666544 667778999999999
Q ss_pred HHHHHHHHHHH
Q 005641 572 AAAEFQLEKEM 582 (686)
Q Consensus 572 ~aL~~qLErl~ 582 (686)
..|..+|+.|.
T Consensus 359 ~~l~~Elq~Ll 369 (546)
T KOG0977|consen 359 QQLSVELQKLL 369 (546)
T ss_pred HHHHHHHHHhh
Confidence 99999999876
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.10 E-value=0.054 Score=68.24 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 562 TQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 562 ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
..|..+..+...|..+|.....
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666543
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.09 E-value=0.0041 Score=64.46 Aligned_cols=183 Identities=19% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 005641 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN---LAEALAAKNSEIETLVSSIDALKKQAALSE 363 (686)
Q Consensus 287 el~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~ese---l~~qL~ake~ei~~Le~rL~~l~qel~~~k 363 (686)
.|..+...||.-+.-..+++.....++..++..+......++..+.. ...++..++.++.........+...+....
T Consensus 40 ~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~ 119 (237)
T PF00261_consen 40 SLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVE 119 (237)
T ss_dssp HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444455555566666666666555555444443 233444444555555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (686)
Q Consensus 364 ~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~E 443 (686)
.++.-++.+...+-..+...+.+ +..|+..|..+.+.+. +.......+..++..++..-..|..-+..+......
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~lk----~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~ 194 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNNLK----SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF 194 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665 5555555555554442 111222233344444444333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 444 RTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 444 e~~ea~eLeeQis~LE~El~qlKQELq~le~ 474 (686)
.-..+..|+.++..|+.++...+.+...+..
T Consensus 195 aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.06 E-value=0.024 Score=67.47 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (686)
Q Consensus 363 k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~ 442 (686)
+.+...++.|.+.|..++-.++.+ +..++.++..+..-- . ..+..+ ..++.-..-|+..|+.|..+|...-+.-.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr~~~-~--e~~~~~-e~L~~aL~amqdk~~~LE~sLsaEtriKl 618 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQ-IRELESELQELRKYE-K--ESEKDT-EVLMSALSAMQDKNQHLENSLSAETRIKL 618 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-h--hhhhhH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455566666666666666666664 555555543332210 1 111111 22333445566666666666666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 443 ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 443 Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
+...-..+.+.|+..++..+.+--+||.+++.++...
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677777776666666666666666655543
No 39
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.05 E-value=0.11 Score=66.61 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 512 NKLSSLEAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 512 ekL~~le~El~~Lr~qle~lk~dleq~---ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
.++.+++..+..|+.++..+..++.-. ......++..++..|...+.....++.....-...++.+|+...-.++..
T Consensus 965 ~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a 1044 (1822)
T KOG4674|consen 965 KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKA 1044 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443211 12334566677777777777777666666666666666666665555554
Q ss_pred HHHHH
Q 005641 589 QSEAE 593 (686)
Q Consensus 589 ~~~~e 593 (686)
+..|+
T Consensus 1045 ~~~Ye 1049 (1822)
T KOG4674|consen 1045 QSKYE 1049 (1822)
T ss_pred HHHHH
Confidence 44444
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.04 E-value=0.054 Score=63.69 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=30.5
Q ss_pred chhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005641 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVA 301 (686)
Q Consensus 247 ~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~e 301 (686)
.+++..-|+....|+.+.-.++.|-.+|..-+..|++.-.....+...||..+..
T Consensus 7 ~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 7 KQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555554433
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.039 Score=64.89 Aligned_cols=136 Identities=17% Similarity=0.227 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-HHHHH-------HHHHHH
Q 005641 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN-QAIQM-------QAWQDE 499 (686)
Q Consensus 428 aeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~-qv~~l-------k~Lq~E 499 (686)
.+|+.-+...+-.+...+.+++++..++..+-.+..+++++|++++.++.++-. +...-+ ++.+. -+-+++
T Consensus 454 qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~-Ekq~l~~qlkq~q~a~~~~~~~~s~ 532 (1118)
T KOG1029|consen 454 QQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP-EKQELNHQLKQKQSAHKETTQRKSE 532 (1118)
T ss_pred HHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhccCcchHHHH
Confidence 344555555566666667778888888888888888888888888887777531 111111 00000 011233
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 005641 500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-EKAAAE 575 (686)
Q Consensus 500 L~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~s-Ek~aL~ 575 (686)
|..++..+ +.-++.++.++.+|..+.+. .-....-+..|+.+|++.+..+|.+.+.+.. ++..|+
T Consensus 533 L~aa~~~k---e~irq~ikdqldelskE~es--------k~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 533 LEAARRKK---ELIRQAIKDQLDELSKETES--------KLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK 598 (1118)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 11122233333333333333 1122355778999999999999998888865 655554
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.01 E-value=0.082 Score=63.86 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 401 RAEEERAAHNATKMA----------AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (686)
Q Consensus 401 ~lEqE~~aHs~Tr~e----------al~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq 470 (686)
++..+...|..+..= ...++.+|+.++--|+.-...++..+.+......+++.--.+|..|.+.+..+..
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555322 2233345555555566666666666666666666666666667777777777776
Q ss_pred HHHHHHHhhccCChHHHHHHH-HHHHHH---------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005641 471 DMEARLKRGQKKSPEEANQAI-QMQAWQ---------------------DEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (686)
Q Consensus 471 ~le~el~r~qk~e~~~a~qv~-~lk~Lq---------------------~EL~~lR~~~~~lEekL~~le~El~~Lr~ql 528 (686)
....-+.+.+.. .+..+++. -..++. .|+.++...+..+++.++....+...+-+.+
T Consensus 454 t~~~s~~rq~~e-~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~ 532 (1195)
T KOG4643|consen 454 TVTRSLSRQSLE-NEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKL 532 (1195)
T ss_pred HHHHhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555554211 11111111 112222 3444444444444444555555555555555
Q ss_pred HHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 005641 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE--------------KAAAEFQLEKEMNRL 585 (686)
Q Consensus 529 e~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sE--------------k~aL~~qLErl~~~~ 585 (686)
+.+..++-.+ -..+..|=+||..|... -+|+..+|.-.++ -++++++.+.++...
T Consensus 533 eeLe~~l~~l-E~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 533 EELEELLGNL-EEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444323 23456777788888876 6777666655443 346667777766543
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.01 E-value=0.033 Score=59.29 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 562 TQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 562 ~qlE~L~sEk~aL~~qLErl~ 582 (686)
..|..+..+...++.++....
T Consensus 262 ~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHH
Confidence 344444444444444444433
No 44
>PRK03918 chromosome segregation protein; Provisional
Probab=97.94 E-value=0.11 Score=62.83 Aligned_cols=31 Identities=13% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 449 GELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 449 ~eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
..+..++..+.....+++.++..++..+..+
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L 431 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEEL 431 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.92 E-value=0.16 Score=65.27 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 005641 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (686)
Q Consensus 279 ~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qe 358 (686)
++.++...+..+.....|..+..+.+....+..++..|+.+......-....+.-+ .....+..+...+..+...
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-----r~q~ei~~l~~~LeELee~ 363 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-----RQQEKIERYQADLEELEER 363 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555556677777777777777777766655443333211 1123333444444444444
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (686)
Q Consensus 359 l~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLksl 398 (686)
+......+..+......+..++...+.+ ++.++..+..+
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLael 402 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4444444444444444444444444442 33333333333
No 46
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.86 E-value=0.012 Score=67.51 Aligned_cols=187 Identities=19% Similarity=0.255 Sum_probs=122.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005641 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAMER 419 (686)
Q Consensus 343 ~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~---~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~R 419 (686)
.++..|..++..+.+++...+..+..++.+.......... ...+...+|...|.-+..++..+...+..+...++.|
T Consensus 109 ~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~r 188 (511)
T PF09787_consen 109 SELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKR 188 (511)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 3445555555555566666666665554444333333333 2222247788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHH---H--H----
Q 005641 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPEEA---N--Q---- 489 (686)
Q Consensus 420 e~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~-qk~e~~~a---~--q---- 489 (686)
...++.+...|.+... +...+.....+..++..++.++...+...+++|.+|+.+..+. +.++.--. . .
T Consensus 189 tl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~ 267 (511)
T PF09787_consen 189 TLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGF 267 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccccc
Confidence 9999888888888888 4456777788999999999999999999999999999887775 32222100 0 0
Q ss_pred -----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 490 -----AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 490 -----v~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
.+.+..|+.|...++.....++.+|..+..+++.+..++..
T Consensus 268 ~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 268 DSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred ccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01134455555555555555555555555555555444444
No 47
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.79 E-value=0.15 Score=61.08 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005641 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (686)
Q Consensus 345 i~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLE 424 (686)
+++++.+....+.++...+..+.++..+..-|.+...+..++ +.+.+... .+++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~------------------~~~~ 465 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSI------------------DDVE 465 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhH------------------HHHH
Confidence 566666666677777777777777766555555555554444 22222111 1445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (686)
Q Consensus 425 eEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~ 477 (686)
++|..|...+.++++.......+..+....++.++.++..+..+++.++..+.
T Consensus 466 ~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 466 EENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666665555666666666666666666666655555433
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.61 E-value=0.51 Score=60.78 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 549 RYRELTDLLYYKQTQLETMASE 570 (686)
Q Consensus 549 qlr~Lte~LieKQ~qlE~L~sE 570 (686)
+.++++..-..-+++++.|..+
T Consensus 639 ~~~~~~~~~~~~~~~~~~L~~~ 660 (1486)
T PRK04863 639 RERELTVERDELAARKQALDEE 660 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 49
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.47 Score=58.54 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=27.3
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQL 295 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqL 295 (686)
+-.+.+..+..+++.+++.+-...-.+.-=+.....+...-..+..=|++++..+
T Consensus 264 ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~ 318 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELF 318 (1293)
T ss_pred ccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4456667777777777766543332222223333344444444444455544444
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.52 E-value=0.47 Score=58.30 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 548 ~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
.+|..|.-....++.+|+...++.+-|..+++.+..
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 367777777788888888888888888888888765
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.48 E-value=0.46 Score=57.18 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hh-hccchhhhhHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR--DA-EHYSREEHMELEKRYRELTDL 556 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~--dl-eq~ss~~~~eLE~qlr~Lte~ 556 (686)
.+..+.+|++.+++..+.+..++..++..|..|+.|+-+.=. .| +++ ...+.+||.+++.|.|+
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qL-tdknlnlEekVklLeet 470 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQL-TDKNLNLEEKVKLLEET 470 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HhhccCHHHHHHHHHHH
Confidence 446677888999888888888999999999999988876321 11 233 23456666666665543
No 52
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.23 Score=56.95 Aligned_cols=189 Identities=25% Similarity=0.278 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 371 MNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450 (686)
Q Consensus 371 aE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~e 450 (686)
.++..|++.+..++. .+.+.+-+|..++.++.+=...|..+-..-..++..|-++. -++-..
T Consensus 43 eeK~~Lkqq~eElea-eyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqES-----------------aakE~~ 104 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEA-EYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQES-----------------AAKEEY 104 (772)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH-----------------HHhHHH
Confidence 467778888888888 48889999999999998877788777333333433332222 122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH--HHHH-HH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005641 451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE--EANQ-AI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (686)
Q Consensus 451 LeeQis~LE~El~qlKQELq~le~el~r~qk~e~~--~a~q-v~-~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~ 526 (686)
+-.+|-.|+.++++++++|...+.+.+++-+.... +.+. +. +-.+|.+||..++-.-.-+-...++++.+-=-|++
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 55667778888888888888888888876432221 1111 11 22456666665543322222334444444444444
Q ss_pred HHHHhhhh-hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 527 EMAAMKRD-AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 527 qle~lk~d-leq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
++..++.. .+ | -.|+-.++.|+++..-=..|+|....-|---..|||-+..
T Consensus 185 qVs~LR~sQVE-y-----EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALe 236 (772)
T KOG0999|consen 185 QVSNLRQSQVE-Y-----EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALE 236 (772)
T ss_pred HHHHHhhhhhh-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45443310 00 0 1223344455555544455555554444444444444443
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.43 E-value=0.14 Score=58.78 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
..++.++..+......+++++..+..++.++......
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444555555555555555554444
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.66 Score=56.57 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel 380 (686)
..+.+++.|+..+.-...+|.....++.+-+.- . .-+.+..+...+..++.++......+...+.....+-...
T Consensus 705 ~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~--~----~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~ 778 (1174)
T KOG0933|consen 705 AQSQKFRDLKQQLELKLHELALLEKRLEQNEFH--K----LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKM 778 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHh--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777776666666655544443321 1 1344455555666666666665555555555544444444
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005641 381 EL----TETRMIQALREELASVERRAEEE 405 (686)
Q Consensus 381 ~~----~ekRilqsLe~eLkslq~~lEqE 405 (686)
.+ .++| +.-++++|+.+.++++..
T Consensus 779 ~d~~~~re~r-lkdl~keik~~k~~~e~~ 806 (1174)
T KOG0933|consen 779 KDAKANRERR-LKDLEKEIKTAKQRAEES 806 (1174)
T ss_pred hHhhhhhHhH-HHHHHHHHHHHHHHHHHH
Confidence 44 3444 666778888888877654
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.61 Score=56.81 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 364 GNLASLQMNMESIMRNRELTETRMIQALR 392 (686)
Q Consensus 364 ~~ls~lqaE~~~L~qel~~~ekRilqsLe 392 (686)
...-.+..+.+.+.+++...+.+|+...+
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~ 762 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKER 762 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888887777665544
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.27 E-value=0.079 Score=51.30 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005641 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (686)
Q Consensus 345 i~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLE 424 (686)
......+...+..+++....+......+...|...+..++.+ +..++..|..++..++.- ..+...-..+-.|+..||
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~-~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEES-EKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHhHHHHHhhHHHHH
Confidence 344444444444444444455555555555555555555554 555555566666555432 111111124556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 425 eEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
++-......|.....++.+...++..+++++..|+.+...+-.++..+..++...+
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 88877788888888889888899999999999999999999999988888776654
No 57
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.20 E-value=8.1e-05 Score=89.88 Aligned_cols=142 Identities=25% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---------ChH--HHHHHHHHHHHHHHHHHHH
Q 005641 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK---------SPE--EANQAIQMQAWQDEVERAR 504 (686)
Q Consensus 436 ~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~---------e~~--~a~qv~~lk~Lq~EL~~lR 504 (686)
.+...+.+....+.++...+..|+.-...+..+++++...+.+.+.. -|+ .+........+..++..+.
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555556666666666555554311 111 0111111122333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 005641 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETM-------ASEKAAAEFQ 577 (686)
Q Consensus 505 ~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L-------~sEk~aL~~q 577 (686)
...+.+..++..+..++..+..+++.+++ .+..|...|..|++.+..-...+..| ..++..+..+
T Consensus 405 ~e~r~~~te~~~Lk~~lee~~e~~e~ler--------e~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~ 476 (859)
T PF01576_consen 405 REARELETELFKLKNELEELQEQLEELER--------ENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQ 476 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554332 23556667777777766655444444 4444444444
Q ss_pred HHHHHHHH
Q 005641 578 LEKEMNRL 585 (686)
Q Consensus 578 LErl~~~~ 585 (686)
|+-+...+
T Consensus 477 leE~E~~l 484 (859)
T PF01576_consen 477 LEEAEDAL 484 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444433
No 58
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.20 E-value=0.39 Score=55.91 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH-------HHHHHHHHHhhhHHHHHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID-------ALKKQAALSEGNLASLQMNM 373 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~-------~l~qel~~~k~~ls~lqaE~ 373 (686)
.+++++..++.++..+|.++..-|..+...++.+......+.+++.-+...+. .|++++......+.......
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44445555555555666666666655665555554555555555544443333 33333333333333322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (686)
Q Consensus 374 ~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLee 453 (686)
+..+-...+.....+..++.+++.|-..++....+|...+..-...+..||.+.-.+...+.++..+|+.. +-++++..
T Consensus 273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ 351 (629)
T KOG0963|consen 273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK 351 (629)
T ss_pred hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence 11111111223334556778888888888887788877777777788899998888888888888888776 66777777
Q ss_pred HHHHHH
Q 005641 454 KVAMLE 459 (686)
Q Consensus 454 Qis~LE 459 (686)
.++.|.
T Consensus 352 ELsiLk 357 (629)
T KOG0963|consen 352 ELSILK 357 (629)
T ss_pred HHHHHH
Confidence 777764
No 59
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.18 E-value=8.8e-05 Score=89.59 Aligned_cols=50 Identities=30% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq 470 (686)
..||+..-.|..-+..++..+.+....+..|++...-|..++..++.+|+
T Consensus 317 EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 317 EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555444444443
No 60
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.16 E-value=0.49 Score=50.83 Aligned_cols=219 Identities=13% Similarity=0.149 Sum_probs=118.6
Q ss_pred cchhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhh----ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005641 227 KVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTIS----TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAE 302 (686)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ek~~~lqkQlee~~~~LrsE~e----al~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el 302 (686)
++.|+-|+..+.+.|--+-+..+-..++.+..-||---+ |+..=.+||-++.+---.-...|.++...-|.+=.+.
T Consensus 14 Eidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEi 93 (305)
T PF14915_consen 14 EIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEI 93 (305)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 345555666666666666666666677777777765433 3333355666665543333333333333323222222
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 005641 303 RELSRSYE----------ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (686)
Q Consensus 303 ~ek~~~Le----------~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE 372 (686)
..-.+.|- ..+..++-+|-+.+++|-..+..+...++.+...+..|...|+ ....++..++.+
T Consensus 94 ES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLs-------kaesK~nsLe~e 166 (305)
T PF14915_consen 94 ESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLS-------KAESKFNSLEIE 166 (305)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHH-------HHHHHHHHHHHH
Confidence 22222222 4455899999999999999999886666555555555554444 444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 373 MESIMRNRELTETRMIQALREELASVERRA-------EEE---RAAHNATKMAAMEREVELEHRAAEASMALARIQRIAD 442 (686)
Q Consensus 373 ~~~L~qel~~~ekRilqsLe~eLkslq~~l-------EqE---~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~ 442 (686)
+....+.|..+-- ++.....+|..++... -.| ...|-....-+-.|...|+++|..|-.-|..++.+..
T Consensus 167 lh~trdaLrEKtL-~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 167 LHHTRDALREKTL-ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444333 3444555555555443 111 2223333344456677888888777776666666665
Q ss_pred HHHHHHHHHHH
Q 005641 443 ERTAKAGELEQ 453 (686)
Q Consensus 443 Ee~~ea~eLee 453 (686)
-...-|-..+.
T Consensus 246 ~kek~ViniQ~ 256 (305)
T PF14915_consen 246 NKEKTVINIQD 256 (305)
T ss_pred HHHHHHhhHHH
Confidence 44333333333
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.15 E-value=1.2 Score=54.96 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
|...++.+++.+...+...+.+.+++..++..++--.
T Consensus 420 L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 420 LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555556666666665555544
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.07 E-value=1.4 Score=54.32 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETMAS 569 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L~s 569 (686)
.+..+..|.-.+...+..|..|..
T Consensus 441 i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 441 IEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556665555555555555543
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.95 E-value=0.37 Score=49.18 Aligned_cols=136 Identities=15% Similarity=0.257 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005641 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516 (686)
Q Consensus 437 lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~ 516 (686)
+..+.......+.++..+...|...+..+..+...++.++..+.+--....+.-..++.++.++..++.....++.+...
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555555555555555555555555555555443111111222234566778888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (686)
Q Consensus 517 le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~ 572 (686)
++.+-..|....+..=.++-+-+.-.+..|+++|..|++.|..|..+|..+..--+
T Consensus 119 le~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 119 LEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888877777555444445566899999999999999999999998866433
No 64
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=1.5 Score=52.38 Aligned_cols=203 Identities=12% Similarity=0.198 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREE 394 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~e 394 (686)
+|+++|.+-+.==.+++++-.+.+..+++-.++|+. +++++-.+.+..++++.+.+=++.+--...+ +..|..+
T Consensus 372 ElekqLerQReiE~qrEEerkkeie~rEaar~ElEk-----qRqlewErar~qem~~Qk~reqe~iv~~nak-~~ql~~e 445 (1118)
T KOG1029|consen 372 ELEKQLERQREIERQREEERKKEIERREAAREELEK-----QRQLEWERARRQEMLNQKNREQEWIVYLNAK-KKQLQQE 445 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHH
Confidence 445555553333344454445555555555555542 2344555566666666555544444332222 3334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 395 LASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 395 Lkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~ 474 (686)
|.+|...+.+=...-..++...... -+.+..+....+-...++++|..++..+..-+-.+-.|-+.+..
T Consensus 446 letLn~k~qqls~kl~Dvr~~~tt~-----------kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVRVDITTQ-----------KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHhhhhhhheeccchH-----------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444433322111111111111111 11222233333334455666666666666666666666666666
Q ss_pred HHHhhccCChHHHHHHHHHHHH--HHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005641 475 RLKRGQKKSPEEANQAIQMQAW--QDEV--ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (686)
Q Consensus 475 el~r~qk~e~~~a~qv~~lk~L--q~EL--~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~d 534 (686)
++...+....+.......+.++ ..++ .+++.+...++.+..+.-.+|.-+..+++.++.+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6665543333222222222221 1121 2333444445555555555566666666665543
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.88 E-value=0.00025 Score=84.23 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 005641 417 MEREVELEHRAAEASMALARI 437 (686)
Q Consensus 417 l~Re~eLEeEnaeLseAL~~l 437 (686)
+.++..||.+|..+..-+..+
T Consensus 256 l~~i~~LE~en~~l~~Elk~L 276 (722)
T PF05557_consen 256 LAHIRELEKENRRLREELKHL 276 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888886665544433
No 66
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=2.8 Score=51.31 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 005641 290 SENAQLEELLVAERELSRSYEARIKQLE--QELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (686)
Q Consensus 290 ~~~aqLEe~~~el~ek~~~Le~~l~~LQ--~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls 367 (686)
....+..+++.-+.++++.|++.+..|. +.|..++..+... -|...+.-..+++..|.+....+-++-..+...+.
T Consensus 184 qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYt--iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~ 261 (1200)
T KOG0964|consen 184 QKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYT--IYDRELNEINGELERLEEDRSSAPEESEQYIDALD 261 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhh--hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344555555566666666665555443 2333333332211 11111222223334444444433344444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 368 SLQMNMESIMRNRELTETRMIQALREELASVE 399 (686)
Q Consensus 368 ~lqaE~~~L~qel~~~ekRilqsLe~eLkslq 399 (686)
.++.++..+..++..+++. +..|..+...++
T Consensus 262 ~~~d~~~~~~~~i~ele~~-l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENK-LTNLREEKEQLK 292 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHH
Confidence 5666666666666666553 555554444443
No 67
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.62 E-value=2.3 Score=50.20 Aligned_cols=88 Identities=14% Similarity=0.270 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (686)
Q Consensus 495 ~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL 574 (686)
+.-.++..+|+..+.++.++...+....+|..+++.+..+. +| .-|=.||.+.+-.+---+..|+.+..+-..|
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~---~R---s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~l 517 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV---NR---SAYTRRILEIVKNIRKQKEEIEKILSDTREL 517 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34467788888888889999999999999999999977643 34 6788899999877655558899998888888
Q ss_pred HHHHHHHHHHHHHH
Q 005641 575 EFQLEKEMNRLQEV 588 (686)
Q Consensus 575 ~~qLErl~~~~~~e 588 (686)
+.++..+..+++..
T Consensus 518 QkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 518 QKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHHhH
Confidence 88888888877764
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.59 E-value=2.5 Score=50.15 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 005641 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (686)
Q Consensus 304 ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k 363 (686)
+.+..|+..+++.=..|..+...|.+.-..+...+..+..+......++..|+..+..++
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555666666666666666666666666666666666665555554
No 69
>PRK09039 hypothetical protein; Validated
Probab=96.53 E-value=0.55 Score=51.61 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=80.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKK 357 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~q 357 (686)
..++++...++..+.+.|=+++...+.++..|+..+..++..+...+..+...+..+ ..+......++.++..+..
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~----~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL----AELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhcchHHHHHHHHHH
Confidence 445555556666666667777777777777777777777777776666555555543 2333445577778888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (686)
Q Consensus 358 el~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~ 401 (686)
+|...+..+.+.......|.++++.+..+ +..++..|..++.+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~ 166 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 88888888888878888888887777776 66666555555544
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.45 E-value=2.6 Score=48.85 Aligned_cols=52 Identities=12% Similarity=0.235 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 428 aeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
..|...+..++..|...+.....++++..+....+.+|..+|..++.++...
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 4444555566667766666666776666665555556666665555555443
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.44 E-value=2.3 Score=48.06 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 005641 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (686)
Q Consensus 284 ~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l 355 (686)
+.....+..++++..+.+.++....|+..+..++.++......+.+-+.++ ...+..|.++..++..+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l----~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL----KKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhhHHHHHHHHHHH
Confidence 334444555555555555555555666666655555555554444444432 33344444444444433
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.33 E-value=2.6 Score=47.58 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=45.1
Q ss_pred CchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (686)
Q Consensus 246 ~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~ 325 (686)
..+.++.+++.+..++...+. ...|.+....+.....+++..+.+-......++..+..+...|..++.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~-----------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQ-----------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555544442 566666666666667777766666666666666666666666666555
Q ss_pred HHHHHHHHH
Q 005641 326 EVTKVESNL 334 (686)
Q Consensus 326 ~~~q~esel 334 (686)
.......-+
T Consensus 109 q~r~qr~~L 117 (420)
T COG4942 109 QEREQRRRL 117 (420)
T ss_pred HHHHHHHHH
Confidence 443333333
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.21 E-value=1.4 Score=46.39 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005641 273 RLARVCAGLSSRLQEYKSENAQLEEL 298 (686)
Q Consensus 273 qLav~~~RLrk~~qel~~~~aqLEe~ 298 (686)
++.++..+.+.....|.+..+.+|..
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~ 43 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEAL 43 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44445566666666666666666544
No 74
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.21 E-value=0.99 Score=42.91 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 392 REELASVERRAEEERAAHNAT 412 (686)
Q Consensus 392 e~eLkslq~~lEqE~~aHs~T 412 (686)
....+.++..|+.|...|..+
T Consensus 37 ~~~a~~Aq~~YE~El~~Ha~~ 57 (132)
T PF07926_consen 37 AKIAQEAQQKYERELVKHAED 57 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344788888999999999877
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.18 E-value=5 Score=49.38 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005641 417 MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM---LEVECATLQQELQDMEARLK 477 (686)
Q Consensus 417 l~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~---LE~El~qlKQELq~le~el~ 477 (686)
-...+.|..|+..|.......++.+.....+...+.+.+.. +..++.-+++.++.+..-++
T Consensus 435 ed~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~ 498 (1195)
T KOG4643|consen 435 EDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN 498 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666555555555554444444443333 22333334444444443333
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.16 E-value=0.92 Score=44.00 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (686)
Q Consensus 283 k~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~ 362 (686)
.....+.-.+.++|..+..|+-++..|+..+..++..|...+..+....... .....|..+|..++.++...
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~--------~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK--------SNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HhHHHHHhhHHHHHHHHHHH
Confidence 3344455556667777777777777777777777777777666666655442 22235666666666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (686)
Q Consensus 363 k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEq 404 (686)
..++..+..-++.+--.....+.+ ++.|+.+.......++.
T Consensus 93 e~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 93 EKKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHH
Confidence 666555555455555555555553 44455444444444443
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.16 E-value=3.9 Score=47.88 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH-------
Q 005641 492 QMQAWQDEVERARQGQR---DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ------- 561 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~---~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ------- 561 (686)
.++.|..|+.++.+.-. .-......++.++..+...+..+...+.... ..-+.+...+..+.+.|.+=.
T Consensus 321 ~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~-~~yS~i~~~l~~~~~~l~~ie~~q~~~~ 399 (560)
T PF06160_consen 321 QNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ-VPYSEIQEELEEIEEQLEEIEEEQEEIN 399 (560)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777776431 1112344455555555555555443332111 111233344444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 562 TQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 562 ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
..+..|..+=..-+-+|..+...+..
T Consensus 400 ~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 400 ESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.06 E-value=0.0016 Score=77.37 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHhhhhccchHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 258 GLLKTTISTGQSKEAR---LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (686)
Q Consensus 258 ~~LrsE~eal~~ke~q---Lav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~e 323 (686)
+.||-|+|.+..+-.+ |.....+.|+-..++..-..+++ +|++.+..|-.++..|+.+|.+.
T Consensus 294 ~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk----~Lee~N~~l~e~~~~LEeel~~~ 358 (713)
T PF05622_consen 294 RALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVK----ELEEDNAVLLETKAMLEEELKKA 358 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555444333 33344455555544433333333 45555666666666666666553
No 79
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.02 E-value=2.3 Score=48.13 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (686)
Q Consensus 388 lqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQ 467 (686)
+.++..+|+-+.+.+-.+......+-..++.|...+|.+...+.+++.-+.+++.+.+.+++++..++.... +...++
T Consensus 208 l~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~ke 285 (554)
T KOG4677|consen 208 LRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKE 285 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHH
Confidence 455667788888888888888888888999999999999888899999999999999999999999888765 566788
Q ss_pred HHHHHHHHHHh
Q 005641 468 ELQDMEARLKR 478 (686)
Q Consensus 468 ELq~le~el~r 478 (686)
||-....+-..
T Consensus 286 eL~~s~~~e~~ 296 (554)
T KOG4677|consen 286 ELALSHYREHL 296 (554)
T ss_pred HHHHHHHHHhh
Confidence 88776655554
No 80
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.00 E-value=4.9 Score=47.66 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK----------SENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 253 lee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~----------~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
++.+...++.++. .|+.+.+++-.++.+-...++ ....+|++.-..+.|.+.........|.++|..
T Consensus 224 ~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~ 300 (786)
T PF05483_consen 224 FEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELED 300 (786)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 3444444444443 467777777777776655444 344444444444444444444444455555554
Q ss_pred HHHHHHH
Q 005641 323 YKSEVTK 329 (686)
Q Consensus 323 eQ~~~~q 329 (686)
.+..+..
T Consensus 301 ~K~slq~ 307 (786)
T PF05483_consen 301 IKQSLQE 307 (786)
T ss_pred HHHHHHH
Confidence 4444433
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.98 E-value=3.2 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005641 456 AMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 456 s~LE~El~qlKQELq~le~el~r 478 (686)
..+..++..++.++..++..+..
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444443333
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.90 E-value=0.011 Score=70.48 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (686)
Q Consensus 547 E~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLEr 580 (686)
..++..|...+..=+..++.|..++..|..+|++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555544
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=4.8 Score=48.57 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=83.5
Q ss_pred hhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005641 240 LKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARI------ 313 (686)
Q Consensus 240 ~~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l------ 313 (686)
.|--|+....+-.+-.+.+.|..+.+.+..+...|.+....|.+..+...+..++|...+..++-.........
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~ 728 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQG 728 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhH
Confidence 33333333444456777777777888888888888888888888888888888888876655554333111110
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 314 --------KQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 314 --------~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
..+.+++...+ .+...+..+.+.|.++++.++.+......++-.....-..+ ..+...-.+.+++....+
T Consensus 729 ~e~~~t~~eel~a~~~e~k-~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~-~~qeqv~El~~~l~e~~~ 806 (970)
T KOG0946|consen 729 AEASKTQNEELNAALSENK-KLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNL-GDQEQVIELLKNLSEEST 806 (970)
T ss_pred HHhccCChHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhh-hhHHHHHHHHHhhhhhhh
Confidence 02333332222 12223344455555555555555544443222111111111 111122223333555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 386 RMIQALREELASVERRA 402 (686)
Q Consensus 386 RilqsLe~eLkslq~~l 402 (686)
| ++.+..+++++++..
T Consensus 807 ~-l~~~q~e~~~~keq~ 822 (970)
T KOG0946|consen 807 R-LQELQSELTQLKEQI 822 (970)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 4 666777777776654
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.83 E-value=5.4 Score=46.75 Aligned_cols=95 Identities=26% Similarity=0.377 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc--hhhhhHHHHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQG----------QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS--REEHMELEKRYRELTDLLYY 559 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~----------~~~lEekL~~le~El~~Lr~qle~lk~dleq~s--s~~~~eLE~qlr~Lte~Lie 559 (686)
.++.|..|+.++.+. .+.++.++..++..+..+...+..... .|+ ...-.++..++..+......
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~---~ysel~e~leel~e~leeie~eq~e 401 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI---AYSELQEELEEILKQLEEIEKEQEK 401 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677766665 344444444444444444444433111 111 11123344444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 560 KQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 560 KQ~qlE~L~sEk~aL~~qLErl~~~~~~e~ 589 (686)
-+..+..|..+-...+-+|+.....+....
T Consensus 402 i~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555556666655555443
No 85
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.79 E-value=4.3 Score=45.30 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 355 LKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 355 l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.++++...+.++.+.+.+..++.....++++|
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544444444443
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.77 E-value=8 Score=48.33 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qL 578 (686)
.+|+.-+-.-...|..|+++|..|..+..++..-+
T Consensus 1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44554555555566777777777777776665544
No 87
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=6.4 Score=47.15 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=17.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 502 RARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 502 ~lR~~~~~lEekL~~le~El~~Lr~qle~lk 532 (686)
..+..+.....+++.++.++..|+..++.++
T Consensus 591 e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 591 ELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444455666666666666666644
No 88
>PRK09039 hypothetical protein; Validated
Probab=95.75 E-value=1.5 Score=48.18 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 291 ENAQLEELLVAERELSRSYEARIKQLEQE 319 (686)
Q Consensus 291 ~~aqLEe~~~el~ek~~~Le~~l~~LQ~e 319 (686)
++..|+..+..++..+..++..+..|+..
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.70 E-value=1.4 Score=46.39 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~ 526 (686)
.+..++..+..++.+..++..+|+.++.+..+.+.+-. .+.......+|+.|+..+......++.+|..+..++.+|++
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555544431110 01112245667777777777777777777777777777777
Q ss_pred HHHHhhh
Q 005641 527 EMAAMKR 533 (686)
Q Consensus 527 qle~lk~ 533 (686)
++..++.
T Consensus 125 ~i~~l~~ 131 (239)
T COG1579 125 EIEDLKE 131 (239)
T ss_pred HHHHHHH
Confidence 7776554
No 90
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.67 E-value=2.9 Score=42.59 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 437 lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
..+.+..+.....++...+..|..++..+++.|...
T Consensus 155 ~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 155 FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555565666666666666555443
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.65 E-value=2.3 Score=41.30 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Q 005641 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (686)
Q Consensus 291 ~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lq 370 (686)
..-+.+..+..-+.....|+.++..|+++|...|.+......+. ...+.++..|...|..+...+......+..+.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da----En~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDA----ENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888899999999999999999999888887663 55677888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 371 MNMESIMRNRELTETRMIQALREE 394 (686)
Q Consensus 371 aE~~~L~qel~~~ekRilqsLe~e 394 (686)
.++..|.+.+...+.+ +..|+..
T Consensus 80 sEk~~L~k~lq~~q~k-v~eLE~~ 102 (140)
T PF10473_consen 80 SEKENLDKELQKKQEK-VSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7888887777777665 4444433
No 92
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.60 E-value=11 Score=48.71 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~ 585 (686)
.++..+|.++...|..-...+..+..+...+...+.++..++
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555554433
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.58 E-value=7 Score=46.26 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 294 qLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
.-+..+.++++.+..+...+..++.++...+..+.++..+.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~ 365 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEEL 365 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456667777777777777777777776666666553
No 94
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.49 E-value=4.6 Score=43.66 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~e 384 (686)
-..++.++.+.|+..+.---..+...-..|..+|..+.+++..|. -++...|..-+.+++|.++..-.|...-
T Consensus 32 diei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~-------SkLe~EKq~kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 32 DIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLN-------SKLEKEKQNKERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667776665555556666666666644444444443 4444445544555555444444444320
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 005641 385 T---RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK----AGELEQKVAM 457 (686)
Q Consensus 385 k---RilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~e----a~eLeeQis~ 457 (686)
. +...+. ..++-++..+...|-..+-.+--..+.|...|.-|++-|..++.+......+ -+.|+++--.
T Consensus 105 ~d~dqsq~sk----rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 105 QDHDQSQTSK----RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred hhHHHHHhhH----HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111 1122222223333322322222334556666777777777777766655433 3455555444
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhccCChHH---HHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 458 L---EVECATLQQELQDMEARLKRGQKKSPEE---ANQA-IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529 (686)
Q Consensus 458 L---E~El~qlKQELq~le~el~r~qk~e~~~---a~qv-~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle 529 (686)
| ..++.+.+..+..++..+...+.++.-- .+.+ ..+-+|++|-.-||+++.++-.+....++-+-.++.++.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~ 259 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3 3566666666666666665554222211 1111 133455666666666665555555555555555554443
No 95
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=10 Score=47.16 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 553 LTDLLYYKQTQLETM 567 (686)
Q Consensus 553 Lte~LieKQ~qlE~L 567 (686)
|...|.++|..|+++
T Consensus 934 L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI 948 (1141)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666555444
No 96
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=7.3 Score=45.43 Aligned_cols=87 Identities=22% Similarity=0.383 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh---hhHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEVTKVES----------NLAEALAAKNSEIETLVSSIDALKKQAALSE---GNLASLQMNM 373 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~~q~es----------el~~qL~ake~ei~~Le~rL~~l~qel~~~k---~~ls~lqaE~ 373 (686)
..|++.+..|+.++...|.-..+++. .+.+.+..++++++.|+...+.|...+.... .....+-.|+
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er 341 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLER 341 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34445555566665555554444432 2233334444444444444444444444333 2333333466
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 374 ESIMRNRELTETRMIQALREE 394 (686)
Q Consensus 374 ~~L~qel~~~ekRilqsLe~e 394 (686)
+.|.+++...... +..|..+
T Consensus 342 ~~l~r~l~~i~~~-~d~l~k~ 361 (581)
T KOG0995|consen 342 NKLKRELNKIQSE-LDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 6666666665542 4444433
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.35 E-value=5.3 Score=43.48 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 254 ee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~ese 333 (686)
..-++.||.+.++...+-..|+.--..|+.+.-.+.....+=|+- .+..|=.++..|..+-...-.+|.+.+.-
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~------isN~LlKkl~~l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF------ISNTLLKKLQQLKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788888888877777777777777777777776666666654 33455566666666666666666666655
Q ss_pred HH
Q 005641 334 LA 335 (686)
Q Consensus 334 l~ 335 (686)
++
T Consensus 107 lt 108 (310)
T PF09755_consen 107 LT 108 (310)
T ss_pred HH
Confidence 43
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.34 E-value=3.9 Score=41.84 Aligned_cols=123 Identities=17% Similarity=0.297 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~ 360 (686)
|++...++++.-...+..+.+.......|.+-+..++.+....+..+..-+.+ ...|....+.+..++..+..+.-+..
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-K~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-KQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555554444444455555555555555555555555665555 35666667777777777777778888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 005641 361 LSEGNLASLQMNMESIMRNRELTETRMIQ-------ALREELASVERRAEE 404 (686)
Q Consensus 361 ~~k~~ls~lqaE~~~L~qel~~~ekRilq-------sLe~eLkslq~~lEq 404 (686)
.+..++..++.|.+.|....+..=-.+.+ .|+..|..+...+|.
T Consensus 111 vL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777774111111 156667777766653
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.31 E-value=8.7 Score=45.68 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~ 362 (686)
....+...+..++.++...+..+...+..+.........+...|+.++..+..++...
T Consensus 224 ~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 224 KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443333333344444444444444444433
No 100
>PF14992 TMCO5: TMCO5 family
Probab=95.17 E-value=2.6 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (686)
Q Consensus 367 s~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEq 404 (686)
..+-..+..+.+++..++. .+++|+.+|...-..++.
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~-~iq~Le~Eit~~~~~~~~ 50 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEG-AIQSLEREITKMDHIADR 50 (280)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccCc
Confidence 3444567788888888888 689999888877765544
No 101
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.12 E-value=6.9 Score=45.32 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=46.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~ 575 (686)
.|-..+...+...+.+...+..++..+...+..++..|+ .....||.||.-|||+|+.=+.+|..-..|+.+|+
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~----TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE----TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 343444333333333333444444444444444443332 12278999999999999999999999999988887
No 102
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.98 E-value=7 Score=42.83 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 005641 462 CATLQQELQDMEA 474 (686)
Q Consensus 462 l~qlKQELq~le~ 474 (686)
+..++.++..++.
T Consensus 248 l~~~~~~l~~~~~ 260 (423)
T TIGR01843 248 LTEAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 103
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.95 E-value=8.2 Score=43.47 Aligned_cols=41 Identities=32% Similarity=0.309 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHH
Q 005641 490 AIQMQAWQDEVERARQGQRDAE----NKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 490 v~~lk~Lq~EL~~lR~~~~~lE----ekL~~le~El~~Lr~qle~ 530 (686)
...+..|+.||.++|..+..++ +++..+-.|-...+.+.++
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~r 296 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENER 296 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4466788999999987665443 3444444444444444444
No 104
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=94.93 E-value=5.7 Score=41.53 Aligned_cols=131 Identities=24% Similarity=0.355 Sum_probs=80.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005641 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERE--------LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (686)
Q Consensus 272 ~qLav~~~RLrk~~qel~~~~aqLEe~~~el~e--------k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ 343 (686)
.++.....++..+...|......|+..+.+... .+..|...+..+...+..++..+..++..+.++| ..
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl---~e 157 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRL---EE 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344445566666777777777777776665554 3345667777888888888888888888887777 33
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 005641 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQA-LREELASVERRAEEERAAH 409 (686)
Q Consensus 344 ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqs-Le~eLkslq~~lEqE~~aH 409 (686)
...-+..++. .+...-...+..+..+.+.+.......... +++ .-.+|+.++.++..|..+.
T Consensus 158 ~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~-f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 158 EENRLQEKIE---KEKNTRESKLSELRSELEEVKRRREKGDEQ-FQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 233333345555555555555444444443 333 5677888888888765553
No 105
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.93 E-value=5.4 Score=41.21 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHhhhh
Q 005641 250 QDQLDEAQGLLKTTIS 265 (686)
Q Consensus 250 qkQlee~~~~LrsE~e 265 (686)
++.+|.+...++.++.
T Consensus 4 ~~d~d~~~~~~~~e~~ 19 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVA 19 (207)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4567777777777743
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=14 Score=44.95 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
..+...+...+..++.+++++++.+-.+...
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566666677777666665544333
No 107
>PRK01156 chromosome segregation protein; Provisional
Probab=94.62 E-value=15 Score=45.03 Aligned_cols=27 Identities=4% Similarity=0.219 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 562 TQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 562 ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
..++.+..+...+.-.|+.+...+..-
T Consensus 522 ~~~~~l~~~l~~~~~~l~~le~~~~~~ 548 (895)
T PRK01156 522 NKIESARADLEDIKIKINELKDKHDKY 548 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554443333
No 108
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.56 E-value=7.5 Score=41.22 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k 363 (686)
+.+.+|..-|..-+..+.++..+|.-++..+.+|+.+...+.-++...|
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555545544555555544444444444555554444444433333
No 109
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.37 E-value=15 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQEL 469 (686)
+..+..++..++.++..+.+.|
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.36 E-value=6.9 Score=39.96 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (686)
Q Consensus 358 el~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~ 401 (686)
++..+|.....++.++++|....-.+++. .++|..++.+++..
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33333444444444455555444444442 44455555544443
No 111
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.29 E-value=14 Score=43.30 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 388 IQALREELASVERRAEEERAAHNAT 412 (686)
Q Consensus 388 lqsLe~eLkslq~~lEqE~~aHs~T 412 (686)
+..+...|..+-..++.|..++...
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYV 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777776665554
No 112
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.22 E-value=10 Score=41.53 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=103.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE----------LSVYKSEVTKVESNLAEALAAKNSEIET 347 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~e----------L~~eQ~~~~q~esel~~qL~ake~ei~~ 347 (686)
..-|...+...+.+..+.=-+.-.+++++..|+.+...+... ....+.++.+.=.+...+...+..++..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555555444433311 0113344444445555555555666677
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 005641 348 LVSSIDALKKQAALSEGNLASLQM------------NMESIMRNRELTETRMIQALREELASVERRAE---EERAAHNAT 412 (686)
Q Consensus 348 Le~rL~~l~qel~~~k~~ls~lqa------------E~~~L~qel~~~ekRilqsLe~eLkslq~~lE---qE~~aHs~T 412 (686)
|..++..++.+++.++..++.... +...+-..++....+ +..|+.++.++....+ .|+..|..
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q-~~qLe~d~qs~lDEkeEl~~ERD~yk~- 168 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ-IEQLERDLQSLLDEKEELVTERDAYKC- 168 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 777777776766666655555443 566666666666665 5566666666554332 23333322
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 413 KMAAMEREVELEHRAAEASMALARIQRI---ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 413 r~eal~Re~eLEeEnaeLseAL~~lQrk---L~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
+-..| |.+|+-.+..-... ++.-..+-.-|.+++..++.|...+++-+..|+.-+++
T Consensus 169 ------K~~RL---N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 169 ------KAHRL---NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred ------HHHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 44445555432222 33333555677777888888888888888888887774
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.21 E-value=8 Score=46.78 Aligned_cols=121 Identities=12% Similarity=0.220 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr 525 (686)
..+..|.+++..+....+.+.++++.+-..+.. +...... +-+.+.+||..++...+.+...+..++..++..+
T Consensus 593 ~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~-~~P~LS~-----AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 593 ESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS-QLPVLSE-----AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555444422 1111111 2256777777777777777777777777777666
Q ss_pred HHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 526 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (686)
Q Consensus 526 ~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~ 576 (686)
.+++. +.+-. ......-+.|.+..++-|-+--..|..+..+.+.+..
T Consensus 667 ~~i~~-~~~~~---~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 667 RQIES-QKSPK---KKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHhc-ccccc---CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66552 21111 1112455677788877777766666666666555543
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.15 E-value=5.4 Score=37.93 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 295 LEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
|+..+..+.+....+..++..+..++.....-|...+..|
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444
No 115
>PRK11281 hypothetical protein; Provisional
Probab=94.13 E-value=23 Score=45.05 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
...+.++....+..+.++.|-+..++++..-.
T Consensus 301 ~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 301 LNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555555555555544443
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.04 E-value=5.2 Score=43.58 Aligned_cols=119 Identities=29% Similarity=0.334 Sum_probs=60.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 005641 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (686)
Q Consensus 277 ~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~ 356 (686)
+...|.+....|+...+.|...+..+.+..-.+.++...|..++..++.--...+..= ..++..|...|..+.
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D-------~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCD-------QEELEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-------HHHHHHHHHHHHHHH
Confidence 4445555555555555555555445555555555555555555555444333332221 223344555555555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 357 qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
.++...+..+..++.++..+...++....+ ++.+..+|+.++.-.+
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555555555556666666666666555553 5555555555554443
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.90 E-value=0.26 Score=49.67 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~a 573 (686)
-.|+.||+.++.....+..+|..+..++..++..+......+..+ ......|+.+++.|.+.|.+|+..++.|..|..+
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp -------------------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777666666666666666666666665544333323 2334789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 574 AEFQLEKEMNRLQEVQS 590 (686)
Q Consensus 574 L~~qLErl~~~~~~e~~ 590 (686)
|.+++..++.+++.-..
T Consensus 156 L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887766443
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.85 E-value=12 Score=40.84 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk 571 (686)
...+.||.+|....-+++.+++.+-.+..+|+..|...+ ..+..|-..++.|.+.-.+=...+.....|.
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk--------e~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK--------ESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777777777776633 2223444445555444444444444444333
No 119
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.85 E-value=8.7 Score=39.23 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410 (686)
Q Consensus 372 E~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs 410 (686)
+.+.|...++..+.. ++..+..+..+...++.....|.
T Consensus 119 eReeL~~kL~~~~~~-l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 119 EREELQRKLSQLEQK-LQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHH
Confidence 445566666666553 55555566666666655554443
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.79 E-value=12 Score=40.76 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr 525 (686)
.++..|..++-.++..++++-.|-+.+...+...+ .....|+.||..++........-+++.+.+++.+|
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk----------e~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK----------ESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555444444443333 23356778888888877777777777887777776
Q ss_pred H
Q 005641 526 V 526 (686)
Q Consensus 526 ~ 526 (686)
.
T Consensus 304 ~ 304 (306)
T PF04849_consen 304 K 304 (306)
T ss_pred C
Confidence 4
No 121
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=24 Score=43.75 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 337 qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
++...+..|.+..++|+.+..+.-..+..+++++...+.||++=..+.. .+.+++..|+.++..+
T Consensus 433 ~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~-~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 433 EIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS-LIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444556666777778888788888888888888888888877666655 4666666666666554
No 122
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.64 E-value=16 Score=41.62 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLE 518 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le 518 (686)
.+..|+.++...+.....+-.++.+.+
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566555555555555555444
No 123
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.47 E-value=23 Score=42.89 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCh-HH-----------
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR--LKRGQKKSP-EE----------- 486 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~e--l~r~qk~e~-~~----------- 486 (686)
..+|.|++.|...+...|..|...+..+.....++..|-..+..++.--..-+.. ....+.... .+
T Consensus 275 ~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~ 354 (717)
T PF09730_consen 275 LQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGL 354 (717)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccH
Confidence 3567777888888888888887777776666666666666555554411111110 011110000 00
Q ss_pred ----HH---HHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHH
Q 005641 487 ----AN---QAIQMQAWQDEVERARQGQRDAENK----LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTD 555 (686)
Q Consensus 487 ----a~---qv~~lk~Lq~EL~~lR~~~~~lEek----L~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte 555 (686)
.. .+.....|+.||..++.....++.. ...++.+++.|..++..+..+.. .....-..|++.|+.++.
T Consensus 355 eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r-e~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 355 EILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR-EDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Confidence 00 0224456777777777666555543 23334556666666665443221 113456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 556 LLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (686)
Q Consensus 556 ~LieKQ~qlE~L~sEk~aL~~qLErl~~~ 584 (686)
.--+.+..|-....|-.+.--.|-.+-+.
T Consensus 434 ~A~E~q~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888877777777666543
No 124
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=19 Score=41.97 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (686)
Q Consensus 313 l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe 392 (686)
...|+.+..++-..|.+...+. ..+.+--+..|+.+.+ + +.++++++++.+.+..++.....-.-+.-.
T Consensus 10 ve~lr~eierLT~el~q~t~e~---~qaAeyGL~lLeeK~~-L-------kqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEK---IQAAEYGLELLEEKED-L-------KQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555543 2222334444443332 2 344455555555555444442211001111
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 393 EELASVERRAEEE---RAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 393 ~eLkslq~~lEqE---~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQEL 469 (686)
.--+++..+.++| .+...+-....+.++.+||.+--++-..+++.+...+-......++..-..+++.+-..++.+|
T Consensus 79 ~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~el 158 (772)
T KOG0999|consen 79 QHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDEL 158 (772)
T ss_pred HHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 1123344444444 2222233455667777777776666666665555444444555666666667788888888888
Q ss_pred HHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005641 470 QDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQGQRDAE---NKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 470 q~le~el~r~qk~e~~~a~q-v~~lk~Lq~EL~~lR~~~~~lE---ekL~~le~El~~Lr~qle~ 530 (686)
.+++-+-.|+- .+-.. -..+..||.-|+.+|+.+-.++ -+|..++.++.-|..+++.
T Consensus 159 Ke~KfRE~Rll----seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 159 KEYKFREARLL----SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHHHHHHH----HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765444432 01111 1245667777888877653333 3444555555544444443
No 125
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.41 E-value=22 Score=42.57 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 313 IKQLEQELSVYKSEVTKVESNLAEA 337 (686)
Q Consensus 313 l~~LQ~eL~~eQ~~~~q~esel~~q 337 (686)
+..++.+...++..+.+...+|..+
T Consensus 192 La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 192 LAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344445555555555555554443
No 126
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.39 E-value=16 Score=43.99 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=11.7
Q ss_pred ccchhhhhhhcccccccc
Q 005641 89 TATLAVEKETITTGKTQK 106 (686)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ 106 (686)
...+.+|.+.|.|..++.
T Consensus 71 ~~~v~tqieiL~Sr~v~~ 88 (754)
T TIGR01005 71 ETGVATQVEILSSNEILK 88 (754)
T ss_pred HHHHHHHHHHHccHHHHH
Confidence 344666777777777664
No 127
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.38 E-value=1.2 Score=45.68 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005641 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (686)
Q Consensus 319 eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~ 377 (686)
+|...+.+|.+...++...+...+..+.+|......|.+++...+.....++++++.++
T Consensus 108 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 108 KLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455554444444444444444444444444444444444444433333333
No 128
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.36 E-value=31 Score=44.10 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=83.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005641 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI 440 (686)
Q Consensus 361 ~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrk 440 (686)
.....+.+++.+...+..++.....+ ++.+...|..+++..+++....+....-+......+.+-+..+......-...
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~-~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~ 960 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLER-IQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECF 960 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhh-hcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33455555555555555555555554 55566667777777776655533322222233345555554444332211111
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH----HHHHHHHHHHHHHHHhhHHHHH
Q 005641 441 ADERT-----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ----AIQMQAWQDEVERARQGQRDAE 511 (686)
Q Consensus 441 L~Ee~-----~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~q----v~~lk~Lq~EL~~lR~~~~~lE 511 (686)
...-. ..+..++.++..+.-++...++.+......-+.++ +.-. -.+++.+..|+..+..+. ++
T Consensus 961 ~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~-----dnl~~~~l~~q~~e~~re~~~ld~Qi--~~ 1033 (1294)
T KOG0962|consen 961 EQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLK-----DNLTLRNLERKLKELERELSELDKQI--LE 1033 (1294)
T ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 11111 11222222223233333333333322211111111 0000 002223333444333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 005641 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (686)
Q Consensus 512 ekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ 561 (686)
..+.....+...|..+...+...-. .--....+|+.++..++.+|.+++
T Consensus 1034 ~~~~~~~ee~~~L~~~~~~l~se~~-~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1034 ADIKSVKEERVKLEEEREKLSSEKN-LLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHhh-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2244455555666555555331000 002446899999999999999877
No 129
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.33 E-value=23 Score=42.41 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH-------HHHHH----HHHH
Q 005641 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE-------ANQAI----QMQA 495 (686)
Q Consensus 427 naeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~-------a~qv~----~lk~ 495 (686)
+..++..+..+...+..++.+-.+|-..+..|..+-.++.|+..++--++...+.--... ..++. ...+
T Consensus 466 eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~ 545 (786)
T PF05483_consen 466 EQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQ 545 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777777777777777766555543111000 00011 1133
Q ss_pred HHHHHHHHHhhHHHH----HH--------------HHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDA----EN--------------KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (686)
Q Consensus 496 Lq~EL~~lR~~~~~l----Ee--------------kL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~L 557 (686)
|..+|..++...... +. .+...+.+|.-|...+..++..++.. ....-+|......|.-.+
T Consensus 546 Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 546 LRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-NKNIEELQQENKALKKKI 624 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 444444444332111 11 11122222333333333322222111 222244555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 558 ieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~ 589 (686)
...-.++-.+..-++.|...++.+...+.+..
T Consensus 625 ~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~ 656 (786)
T PF05483_consen 625 TAESKQSNVYEIKVNKLQEELENLKKKHEEET 656 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66667777777788888888888777665543
No 130
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.27 E-value=30 Score=43.66 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 438 QrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
+..+.+.......+...+..+...+..+..++......+..
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 756 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDT 756 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555544444
No 131
>PF13514 AAA_27: AAA domain
Probab=93.22 E-value=31 Score=43.70 Aligned_cols=22 Identities=14% Similarity=0.133 Sum_probs=17.3
Q ss_pred CCCCchhhhhHHHHHHHHHhhh
Q 005641 243 DDPPTKEQDQLDEAQGLLKTTI 264 (686)
Q Consensus 243 ~ek~~~lqkQlee~~~~LrsE~ 264 (686)
+-.+|++-++++++.+.++.-.
T Consensus 149 ~~~in~~l~~l~e~~~~l~~~~ 170 (1111)
T PF13514_consen 149 KPEINQALKELKELERELREAE 170 (1111)
T ss_pred ChHHHHHHHHHHHHHHHHHHHh
Confidence 3367888888999888888774
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.20 E-value=12 Score=40.08 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 366 LASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445 (686)
Q Consensus 366 ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~ 445 (686)
+.+++..++.|+.+-...+=+ |.+|+.-|..-++..+.|....... ..+|..|.++...+++.-+...
T Consensus 20 IqelE~QldkLkKE~qQrQfQ-leSlEAaLqKQKqK~e~ek~e~s~L-----------kREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQ-LESLEAALQKQKQKVEEEKNEYSAL-----------KRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhhhhhh-----------hhhhhhHHHHHHHHHHHHHHhh
Confidence 344444455555554444443 5556666666666655555444333 4455555555544444332222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 446 -------AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 446 -------~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
..+.-|+.|+......++.+.++|..++.++++.+
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555566666666666554
No 133
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.65 E-value=21 Score=40.33 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005641 364 GNLASLQMNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (686)
Q Consensus 364 ~~ls~lqaE~~~L~qel~~-----------------------~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re 420 (686)
.++.++.+|++.|+.++.. ..++.++-|+.++.-+...+..=...|...-++....+
T Consensus 208 KrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665532 23333444444433333333322334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis 456 (686)
..++++| .++|++|..+..+-..|+++++
T Consensus 288 ~~~reen-------~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 288 VDHREEN-------ERLQRKLINELERREALCRMLS 316 (552)
T ss_pred hhHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 5565555 4667777666555544554443
No 134
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.56 E-value=16 Score=38.79 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk 571 (686)
+..+|..++.+.+..+..+..-|.+ +..-.+-|+..++. +-|+- .+++.+|.+- |+|.+-||.=..||
T Consensus 92 q~s~Leddlsqt~aikeql~kyiRe----LEQaNDdLErakRa-ti~sl---eDfeqrLnqA----IErnAfLESELdEk 159 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRE----LEQANDDLERAKRA-TIYSL---EDFEQRLNQA----IERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccHHHHhhhh-hhhhH---HHHHHHHHHH----HHHHHHHHHHhhHH
Confidence 4456777888777654444443333 33334444443321 22322 5677777665 77777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005641 572 AAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 572 ~aL~~qLErl~~~~~~e~ 589 (686)
..|.....|+.-.+++-.
T Consensus 160 e~llesvqRLkdEardlr 177 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLR 177 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776555543
No 135
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=29 Score=41.59 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYY 559 (686)
Q Consensus 544 ~eLE~qlr~Lte~Lie 559 (686)
++.++++++|-+.|..
T Consensus 380 te~~tklk~l~etl~~ 395 (716)
T KOG4593|consen 380 TEEETKLKELHETLAR 395 (716)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 5556666666555433
No 136
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.20 E-value=15 Score=37.55 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=59.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 005641 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (686)
Q Consensus 274 Lav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~ 353 (686)
|...--||..-...|+......|+.+.-|.+.+..|...+..+|+++...+. +...=.++..-+...+++..-|...-.
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~-l~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA-LEEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566666667777777777777777777777666654321 111111112222333444444444444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 354 ~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.++++-+..-..+..++.++..+..+..-+.++
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 445555555555566666666666665555554
No 137
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.17 E-value=35 Score=41.72 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~ql 465 (686)
..++.+.-.+..-+..++..+..++.-..++..+|..|+.++.+.
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 334444444444445555555555555555555555444444433
No 138
>PRK01156 chromosome segregation protein; Provisional
Probab=92.10 E-value=37 Score=41.78 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=4.0
Q ss_pred HHHhhhchh
Q 005641 646 TRFLWRYPI 654 (686)
Q Consensus 646 g~fLRR~P~ 654 (686)
+.++.--|+
T Consensus 827 ~~lilDEpt 835 (895)
T PRK01156 827 SLLIMDEPT 835 (895)
T ss_pred CeEEEeCCC
Confidence 334444454
No 139
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.85 E-value=16 Score=40.00 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
..+..+|.....++...+..+..++.++..+...++....+ ++-++..|+.++.-.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~ 262 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555666666555553 555555555555544
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.82 E-value=36 Score=41.08 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
+...|+.+....+.-|..+-+.++.++
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 141
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.77 E-value=14 Score=36.10 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
+.....|+.++..+++++.........+..++...+..++.++.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~ 59 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEE 59 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555554444444444444444444433
No 142
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.74 E-value=36 Score=40.90 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 324 Q~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
+..+..+...+...++.+.+....|+.++..++.........+..++.+.+.|...++-.... +.+.-..+..+..-.
T Consensus 150 qeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~-le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 150 QEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE-LEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Confidence 344455555555666666666667776666666655555666666666777666666665442 333333344444333
No 143
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.51 E-value=42 Score=41.26 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRA---AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 393 ~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEn---aeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQEL 469 (686)
.....++..+..-...|.......-.....++.+. ..+.+-..++.+.+.+..+....++.+.....--++++++|+
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444554445555555433334444444433 344444555666666666666666667666677777888888
Q ss_pred HHHHHHHHhhc
Q 005641 470 QDMEARLKRGQ 480 (686)
Q Consensus 470 q~le~el~r~q 480 (686)
..+..++...+
T Consensus 504 ~~l~~e~~~lq 514 (980)
T KOG0980|consen 504 ALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHH
Confidence 77777666665
No 144
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.48 E-value=30 Score=39.46 Aligned_cols=15 Identities=7% Similarity=-0.221 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHHH
Q 005641 652 YPIARIILLFYLKSF 666 (686)
Q Consensus 652 ~P~aRl~~l~Y~vlL 666 (686)
+..-++|||+|++++
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (498)
T TIGR03007 472 RRRRLAAFLASAGLL 486 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555443
No 145
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.33 E-value=0.059 Score=64.34 Aligned_cols=19 Identities=21% Similarity=0.058 Sum_probs=10.7
Q ss_pred CCcccCCCCcccccCCCCCCCC
Q 005641 153 NGEILNENDSDVHLNHPPSPLP 174 (686)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (686)
||-++++=... -+|.||-+
T Consensus 33 DGv~L~evL~q---IDp~~F~~ 51 (713)
T PF05622_consen 33 DGVALAEVLHQ---IDPEYFND 51 (713)
T ss_dssp TSHHHHHHHHH---H-TTTS-H
T ss_pred chHHHHHHHHH---hCccccCc
Confidence 77777776644 45655543
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=33 Score=39.28 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 508 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ-TQLETMASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 508 ~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ-~qlE~L~sEk~aL~~qLErl~~~~~ 586 (686)
+...+++.+.+..-..|+.+++.+-.|. ++ ..|..|+++++-. +.|| +.|-.+..|...|+.|++....++.
T Consensus 355 ~a~~eei~~~eel~~~Lrsele~lp~dv---~r---k~ytqrikEi~gn-iRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 355 EAVDEEIESNEELAEKLRSELEKLPDDV---QR---KVYTQRIKEIDGN-IRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcCCchh---HH---HHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666778888887744433 13 7899999999655 5566 7899999999999999998877554
Q ss_pred H
Q 005641 587 E 587 (686)
Q Consensus 587 ~ 587 (686)
.
T Consensus 428 R 428 (521)
T KOG1937|consen 428 R 428 (521)
T ss_pred h
Confidence 4
No 147
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.02 E-value=43 Score=40.42 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Q 005641 406 RAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE 485 (686)
Q Consensus 406 ~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~ 485 (686)
..-|...++.++.+...|+++-..+..-+.+++..-+.-......|+.++..|+. +..+.-+.|...+..+.+..+.
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~---~~~~~~~~mrd~~~~~~e~~~~ 280 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR---SSLEKEQELRDHLRTYAERRRE 280 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhcchhhhhHHHHHh
Confidence 5667777888888888888777666666666665555555556666666666652 2222222222222222211111
Q ss_pred --HHHH----HH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005641 486 --EANQ----AI---QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (686)
Q Consensus 486 --~a~q----v~---~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~d 534 (686)
..++ +. ....|+.+...- .....+......+..++..|+......+.+
T Consensus 281 ~~~~~~k~S~~~rrp~~grL~~~rdep-~kv~~l~~q~w~r~qq~~vl~~~~q~f~S~ 337 (916)
T KOG0249|consen 281 TETTNYKTSGVRRRPRKGRLKALRDEP-EKVQTLNEQEWARDQQAQVLANVLQAFESD 337 (916)
T ss_pred hcchhhhhhhhhhhhhhhhHHHhhhch-HHHHHHHHHHHHHHHHHHhccchhhhhhcC
Confidence 0111 11 122233222211 122345666677777778887777665543
No 148
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.86 E-value=16 Score=36.30 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (686)
Q Consensus 284 ~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~e 319 (686)
...+++....+++..+..++..+..+...+..+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433333
No 149
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.86 E-value=57 Score=41.59 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
+...+.++....+..+.++.|-+..++++..-.+
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555556666666666666666665554
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.81 E-value=22 Score=36.71 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005641 270 KEARLARVCAGLSSRLQEYKSENAQL 295 (686)
Q Consensus 270 ke~qLav~~~RLrk~~qel~~~~aqL 295 (686)
|.+.|+-++.+|++++.|+......+
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Ei 33 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEI 33 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 55667777788888777776655443
No 151
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.72 E-value=18 Score=39.55 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 005641 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY----KSEVTKVESNLAEALAAKNSEIETLVSSI 352 (686)
Q Consensus 277 ~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~e----Q~~~~q~esel~~qL~ake~ei~~Le~rL 352 (686)
....|+...+.|.+..+.+...+-.++++...|+..+..|++.-... +..+.... +.|.....+|......+
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk----~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK----EKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333222 11222222 33344455556666666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 353 DALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 353 ~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
..++.++...+..++.....+..+..++...++
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666665
No 152
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.69 E-value=29 Score=37.96 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 280 RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
+|+.....|..++-.|...+..++-+|..|+..+..|-.+--+.+..-.+.+.-+
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i 78 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI 78 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555666667776666666666555555555555443
No 153
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.27 E-value=32 Score=37.72 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005641 451 LEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (686)
Q Consensus 451 LeeQis~LE~El~qlKQELq~le~el~r~qk 481 (686)
.+..+..++.++..+++++...+.++..++.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777654
No 154
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.15 E-value=72 Score=41.58 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (686)
Q Consensus 434 L~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el 476 (686)
..+++..+++.+.+.+.+..++..+..+...+..++..+..++
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555554444444
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.09 E-value=11 Score=36.41 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 005641 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (686)
Q Consensus 273 qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL 352 (686)
+|.....||+....++..+.+.++...+.++..++.++..+.....++.+.+....+....+.-.+.+++-++.-|..+|
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666666655555555555555555555555555555555555555555555555555555444
No 156
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.60 E-value=54 Score=39.40 Aligned_cols=60 Identities=25% Similarity=0.096 Sum_probs=32.9
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV 300 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~ 300 (686)
|++.++..++.+.+-.+..++.--..+.-.+.++.+-.+++++..+...-..++|++...
T Consensus 162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~ 221 (716)
T KOG4593|consen 162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333333444445677777777777777777666666666444
No 157
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.36 E-value=15 Score=40.98 Aligned_cols=100 Identities=10% Similarity=0.164 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhh
Q 005641 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (686)
Q Consensus 285 ~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~ 364 (686)
..+|+....|.-.+..............+..++.++..--+-...+|.-++.++.-+-.+-..+..+++.++.++.....
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888888888887777777888888888888888888888888888888888877777777777777777777777766
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 005641 365 NLASLQMNMESIMRNRELTE 384 (686)
Q Consensus 365 ~ls~lqaE~~~L~qel~~~e 384 (686)
...+...++..+.++++...
T Consensus 295 ~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666655556665555533
No 158
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.22 E-value=52 Score=38.69 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 388 IQALREELASVERRAEEERAAHNAT 412 (686)
Q Consensus 388 lqsLe~eLkslq~~lEqE~~aHs~T 412 (686)
+..+...|..+=..++.|..++...
T Consensus 280 ~~~i~~~Id~lYd~le~E~~Ak~~V 304 (560)
T PF06160_consen 280 NEEIEERIDQLYDILEKEVEAKKYV 304 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777777776665544
No 159
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.16 E-value=7.1 Score=39.39 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005641 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (686)
Q Consensus 339 ~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ 383 (686)
..++..++.|...+.+++-++.....++..++.|++.|.++.=..
T Consensus 140 ~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 140 KEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666667777777777777778888877777766553
No 160
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.87 E-value=31 Score=35.68 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 547 EKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (686)
Q Consensus 547 E~qlr~Lte~LieKQ~qlE~L~sEk~aL~~ 576 (686)
+-++.+|.+.|.+|....+.|+.=...|-.
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888887777777665554443
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.76 E-value=37 Score=36.34 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 490 AIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 490 v~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk 532 (686)
...+..++.++...|.-...+++.|..|.++++.|+.+....+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 3466788899999999999999999999999999988877544
No 162
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.69 E-value=46 Score=37.32 Aligned_cols=199 Identities=17% Similarity=0.155 Sum_probs=98.3
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 005641 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYE----------------------- 310 (686)
Q Consensus 254 ee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le----------------------- 310 (686)
|++...|..|++.+..=..-|........+....++.....||. ++++|...+.
T Consensus 115 D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~---Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r 191 (384)
T PF03148_consen 115 DEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEK---DLSDKFEALEIDTQCLSLNNNSTNISYKPGSTR 191 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence 45556666666555544555666666666666667777777775 6666555444
Q ss_pred ----------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 005641 311 ----------------ARIKQLEQELSVYKSEVT-------KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (686)
Q Consensus 311 ----------------~~l~~LQ~eL~~eQ~~~~-------q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls 367 (686)
..+...+.++.....=+. +..+++..+- +.....|..+|.....-...+...+.
T Consensus 192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~---~~vn~al~~Ri~et~~ak~~Le~ql~ 268 (384)
T PF03148_consen 192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA---DAVNAALRKRIHETQEAKNELEWQLK 268 (384)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444433332222 2222222222 33344455455444444334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 368 SLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER--EVELEHRAAEASMALARIQRIADERT 445 (686)
Q Consensus 368 ~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~R--e~eLEeEnaeLseAL~~lQrkL~Ee~ 445 (686)
++..++..+...+..+++ .+..+..-|+-++.+++.-.. . --.+...- ...|-.|-..|..++..++.+|.+..
T Consensus 269 ~~~~ei~~~e~~i~~L~~-ai~~k~~~lkvaqTRL~~R~~--R-P~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~ 344 (384)
T PF03148_consen 269 KTLQEIAEMEKNIEDLEK-AIRDKEGPLKVAQTRLENRTQ--R-PNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAE 344 (384)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhhHhc--C-CchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 344455556666666653111 0 00111111 12344445556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVEC 462 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El 462 (686)
.....|......|+.++
T Consensus 345 ~~l~~L~~~~~~Le~di 361 (384)
T PF03148_consen 345 ASLQKLERTRLRLEEDI 361 (384)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555554
No 163
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.67 E-value=69 Score=39.34 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 367 s~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
+.+.++..-|+.+|+..+|. ..+|.+++..++-.++
T Consensus 130 ~~~e~~~~~l~~~l~~~eke-n~~Lkye~~~~~kele 165 (769)
T PF05911_consen 130 SQAEAEIEDLMARLESTEKE-NSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444455555555555553 5555555555555444
No 164
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.61 E-value=50 Score=37.67 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHhHHHHHHHHHHHhhh
Q 005641 310 EARIKQLEQELSVYKSEVTKVESNLA---EALAAKNSEIETLVSSIDALKKQAALSEGN 365 (686)
Q Consensus 310 e~~l~~LQ~eL~~eQ~~~~q~esel~---~qL~ake~ei~~Le~rL~~l~qel~~~k~~ 365 (686)
+....++...+...+....+.+++.. .+-+....++-.|..|...|++++.....+
T Consensus 214 ee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElr 272 (502)
T KOG0982|consen 214 EEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELR 272 (502)
T ss_pred hchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444445444444444443211 011222444444555555444444444333
No 165
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.44 E-value=59 Score=38.30 Aligned_cols=100 Identities=11% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 005641 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYE---ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (686)
Q Consensus 275 av~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le---~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~r 351 (686)
+.+..||.+-.+-...+.+.|+..++++-+++...+ .++..|...-.++|.+.+.-+. =...|..+
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-----------y~~~~~~k 288 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-----------YVSQMKSK 288 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-----------HHHHHHhh
Confidence 346788888888888888888887777777776333 2222333333333333222222 22444455
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 352 L~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
...+.+.+..++..++..+.|.+.|+.+...+.+
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555544
No 166
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.21 E-value=70 Score=38.91 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
.++.-|++|+..++.+-..+...|+..+..+...+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~ 299 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQ 299 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665556555655555555543
No 167
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.17 E-value=44 Score=36.50 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 509 DAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~ 530 (686)
....++..++++...++..++.
T Consensus 248 km~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 248 KMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666
No 168
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.14 E-value=72 Score=38.93 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=32.8
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005641 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH 58 (686)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~ 58 (686)
.||=|-|.-.=|--|.+.+-. +-+|+..=.+|+-.+||||-+++
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh 59 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH 59 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence 588888888878777774322 24677777788888999999888
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.03 E-value=19 Score=34.17 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 288 l~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
|++...++|..+..+++.+..|+..++.+..++.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544445555555555555555555444
No 170
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.02 E-value=45 Score=36.43 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=14.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 005641 277 VCAGLSSRLQEYKSENAQLEELL 299 (686)
Q Consensus 277 ~~~RLrk~~qel~~~~aqLEe~~ 299 (686)
.|--|++...+.+.....+|...
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666643
No 171
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.64 E-value=31 Score=39.09 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE 565 (686)
Q Consensus 517 le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE 565 (686)
.+.||..|+.+|..++..+.+.+ ..|.|.+-|-+.-=|+.|.
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs-------~eRaRdi~E~~Es~qtRis 315 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQS-------YERARDIWEVMESCQTRIS 315 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH
Confidence 34556666666666554444222 2366666444444444333
No 172
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.40 E-value=49 Score=36.16 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQL 316 (686)
Q Consensus 270 ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~L 316 (686)
+-.+|..-...++.-..-......-||.++|+++-....+.+.-..+
T Consensus 51 k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 51 KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555556667776666666666555444433
No 173
>PF13514 AAA_27: AAA domain
Probab=87.29 E-value=96 Score=39.46 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 450 ELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 450 eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
.+..++..++.++..+..++..++.++..
T Consensus 805 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 805 RLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 174
>PLN02939 transferase, transferring glycosyl groups
Probab=87.16 E-value=93 Score=39.16 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 005641 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQ 497 (686)
Q Consensus 418 ~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq 497 (686)
.+...||.|.+.|..++.+++.++-....-+. ++..|+.++ +-.+.+.++.-+.+....+-.-+.-+.++..|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVS----KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLR 330 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 56677889999999999999988866542222 223344443 444455555444443211110011112334455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAE-VQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~E-l~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sE 570 (686)
.-+..+...+... .+.++..+ +..|+++++.++..+. ....++..+++--++.+.+=|..+..|..|
T Consensus 331 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 331 DKVDKLEASLKEA--NVSKFSSYKVELLQQKLKLLEERLQ----ASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHHh--hHhhhhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555444433211 22222222 3445555555443331 223556666666666666666666666544
No 175
>PLN02939 transferase, transferring glycosyl groups
Probab=86.95 E-value=96 Score=39.07 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=24.1
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHH
Q 005641 334 LAEALAAKNSEIETLVSSIDALKKQAALSE---GNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 334 l~~qL~ake~ei~~Le~rL~~l~qel~~~k---~~ls~lqaE~~~L~qel~~~ekR 386 (686)
+...+..++.++-.|...++.+..++...+ +++-.++-|.-.|...+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESK 279 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444332 33333333444444444444444
No 176
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.89 E-value=24 Score=33.47 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005641 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513 (686)
Q Consensus 434 L~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEek 513 (686)
+..++..+...-.++..++.++..|...-..+.+||-.+-...+..+ ........|+.++..+......+=.-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~-------~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR-------ALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555556665555555555555554444333322 11223334455555555444444334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 514 LSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 514 L~~le~El~~Lr~qle~ 530 (686)
+-+...++.+|+.-+..
T Consensus 91 lGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQD 107 (120)
T ss_pred hcchHHHHHHHHHHHHH
Confidence 44455555555555544
No 177
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.81 E-value=92 Score=38.72 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=6.7
Q ss_pred CchhhhhHHHHHHHH
Q 005641 246 PTKEQDQLDEAQGLL 260 (686)
Q Consensus 246 ~~~lqkQlee~~~~L 260 (686)
...++.++..+.+.+
T Consensus 324 l~~~~~~~~~~~~~~ 338 (908)
T COG0419 324 LKSLEERLEKLEEKL 338 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.77 E-value=10 Score=39.03 Aligned_cols=9 Identities=11% Similarity=-0.193 Sum_probs=4.4
Q ss_pred hcCCCCchh
Q 005641 241 KADDPPTKE 249 (686)
Q Consensus 241 ~~~ek~~~l 249 (686)
+..+-|...
T Consensus 74 ~G~~GWV~~ 82 (206)
T PRK10884 74 KGRTAWIPL 82 (206)
T ss_pred CCCEEeEEH
Confidence 344556543
No 179
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=86.01 E-value=64 Score=36.17 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
..+.+|..|..-....+..|...+.....++..|......++..+..
T Consensus 116 ~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~d 162 (384)
T PF03148_consen 116 EVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSD 162 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777766666655553
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.79 E-value=75 Score=37.07 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSY 309 (686)
Q Consensus 277 ~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~L 309 (686)
.-++|-|+.-.|.-.|.-||+.+..-.+....|
T Consensus 84 iGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql 116 (596)
T KOG4360|consen 84 IGQSLLKANKALQEDNESLEEQVDAPWDRVVQL 116 (596)
T ss_pred HHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHh
Confidence 455677777777777777776544444444333
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.33 E-value=42 Score=33.43 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~a 573 (686)
..++.||..++......-.+.-.++..-...+..|..+..+|..|+..+-.+-=...+.+.-.|.-++.+-..|...|..
T Consensus 30 ~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~ 109 (159)
T PF05384_consen 30 ERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDE 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666777777777778777788877775333222224566666777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 574 AEFQLEKEMNRLQEVQSEA 592 (686)
Q Consensus 574 L~~qLErl~~~~~~e~~~~ 592 (686)
|..+|..+...+......+
T Consensus 110 LErrl~~l~~tierAE~l~ 128 (159)
T PF05384_consen 110 LERRLRNLEETIERAENLV 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888776655554443
No 182
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.91 E-value=72 Score=35.74 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=9.1
Q ss_pred hhhhhhhcccccccc
Q 005641 92 LAVEKETITTGKTQK 106 (686)
Q Consensus 92 ~~~~~~~~~~~~~~~ 106 (686)
+.++.+.|.|..++.
T Consensus 69 i~tq~~il~S~~v~~ 83 (444)
T TIGR03017 69 MATQVDIINSDRVAK 83 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666664
No 183
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=93 Score=36.62 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA 396 (686)
Q Consensus 317 Q~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLk 396 (686)
|+-..++.......+.+..+.+..-.-++++|..++..++..+..-...+-.+ +...+++++ ....+..+|+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dl-------kehassLas-~glk~ds~Lk 383 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDL-------KEHASSLAS-AGLKRDSKLK 383 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-Hhhhhhhhhh
Confidence 34444444444555555566677778888999999988877655544444444 344444444 2334556677
Q ss_pred HHHHHHHHHHH
Q 005641 397 SVERRAEEERA 407 (686)
Q Consensus 397 slq~~lEqE~~ 407 (686)
++.-.+|+...
T Consensus 384 ~leIalEqkkE 394 (654)
T KOG4809|consen 384 SLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHH
Confidence 77766665433
No 184
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.32 E-value=54 Score=33.83 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 541 ~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
++...|+.+|+.||+.|-+=-+..+-...-...|....++++..+...
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~ 184 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEA 184 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHH
Confidence 344667777777777776666666666666666666666555544443
No 185
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.31 E-value=83 Score=36.00 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=10.3
Q ss_pred hhhcchhccchhHHhhhcCCC
Q 005641 58 HSADESLKINDTAREQANTQA 78 (686)
Q Consensus 58 ~~~~e~~~~~~~~~~~~~~~~ 78 (686)
|-+..++.++-+.++++-|-+
T Consensus 20 LqGssss~as~adglla~T~s 40 (502)
T KOG0982|consen 20 LQGSSSSSASVADGLLAETRS 40 (502)
T ss_pred cCCCccCCCCcccchhhhccC
Confidence 334444555555555554333
No 186
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.07 E-value=1.2e+02 Score=37.69 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.8
Q ss_pred HHHhhhhhhhH
Q 005641 632 QKAAKLLDSGA 642 (686)
Q Consensus 632 k~a~s~lDs~~ 642 (686)
..++..++.+-
T Consensus 739 ~~~~~~~~~l~ 749 (908)
T COG0419 739 EKALELLEELR 749 (908)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 187
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=83.88 E-value=83 Score=35.64 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHH
Q 005641 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYREL 553 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~L 553 (686)
+.+|+=++.+|.-|++++..+.+|- .|.+ .-|+.=+-+|
T Consensus 518 EsEiQYLKqEissLkDELQtalrDK-kyaS---dKYkDiYtEL 556 (593)
T KOG4807|consen 518 ESEIQYLKQEISSLKDELQTALRDK-KYAS---DKYKDIYTEL 556 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hccc---cchhHHHHHH
Confidence 3455566666666666666655443 2333 3454444444
No 188
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.87 E-value=17 Score=39.72 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~a 573 (686)
+.++.|-..+.+.+..++.+...+.+++..|+.+...+.. .+..+=...+.+.-.+.+.+...+.+......
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~--------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE--------EEEEYWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555555555544444221 12234445555544555554545555554444
Q ss_pred HHHHHHHHH
Q 005641 574 AEFQLEKEM 582 (686)
Q Consensus 574 L~~qLErl~ 582 (686)
...+|+++.
T Consensus 125 ~~~~L~~L~ 133 (314)
T PF04111_consen 125 ASNQLDRLR 133 (314)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 444554444
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.68 E-value=43 Score=32.24 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 510 AENKLSSLEAEVQKMRVEM 528 (686)
Q Consensus 510 lEekL~~le~El~~Lr~ql 528 (686)
+.-++...+.|+.+|++.|
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666554
No 190
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.54 E-value=49 Score=32.80 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 436 ~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~ 474 (686)
.+++.+.+.+.++..++.++..+..++..+.+.+.+.+.
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 148 ELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555544443
No 191
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.46 E-value=25 Score=35.49 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (686)
Q Consensus 283 k~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~ 362 (686)
+-++-|...+..|++.++.++..|+.+++.+..|++.|.- .+|+..+..|.+++...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----------------------eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----------------------EEMQEEIQELKKEVAGY 135 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------------------HHHHHHHHHHHHHHHHH
Confidence 4566677888899998889999999998888888888765 33334444455566655
Q ss_pred hhhHHHHHH
Q 005641 363 EGNLASLQM 371 (686)
Q Consensus 363 k~~ls~lqa 371 (686)
..++..+.+
T Consensus 136 ~erl~~~k~ 144 (201)
T KOG4603|consen 136 RERLKNIKA 144 (201)
T ss_pred HHHHHHHHH
Confidence 666655544
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.09 E-value=79 Score=36.34 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=30.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 358 el~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
++...+..+.....+.+.+..+..++++. ..+++..+..++..+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~-kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAE-KKIVERKLQQLQTKLK 392 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 55555666666667777777788887773 6777766666665554
No 193
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.96 E-value=1.2e+02 Score=36.94 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 451 LEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 451 LeeQis~LE~El~qlKQELq~le~ 474 (686)
+..++..|..-+++++..+++.+.
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555544433
No 194
>PRK11281 hypothetical protein; Provisional
Probab=82.48 E-value=1.6e+02 Score=37.85 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005641 271 EARLARVCAGLSSRLQEYKSENAQLEE 297 (686)
Q Consensus 271 e~qLav~~~RLrk~~qel~~~~aqLEe 297 (686)
..+...+..++..+-++++...+.||.
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~ 105 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEA 105 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555666666666666666666664
No 195
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.47 E-value=75 Score=34.09 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005641 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (686)
Q Consensus 320 L~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~ 362 (686)
|...+.++...+..+...++.++.+...|.++|.-+++++..+
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666667777777777777777777777655
No 196
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=82.40 E-value=76 Score=34.10 Aligned_cols=265 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCcccCCCCcccccCCCCCCCCCcccccccCCCccccccccccccCCCCccccccccccCCCCCCCCccccccccchhh
Q 005641 152 PNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETL 231 (686)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (686)
+||+|.|+.++-+.-.-|+|++|. |++.+- -+.-|-...--+.-+|.+|-.-
T Consensus 28 s~~dl~d~e~d~~~s~~~A~~~~t-Gm~~~~---------------------------~~~~p~pk~~~~seq~~~~~a~ 79 (330)
T KOG2991|consen 28 SFGDLEDDEDDIFGSTTVAPGVRT-GMILSM---------------------------TNEEPLPKKVRLSEQDFKVMAR 79 (330)
T ss_pred hccCccccccccccCCCCCCCCcc-chhhhh---------------------------ccCCCCchhhhhHHHHHHHHHH
Q ss_pred chhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 232 SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (686)
Q Consensus 232 ~~~~~~~~~~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~ 311 (686)
-....++..+-++....--.- --.+.|--.+..|..-+..|+.-|.--+.+..-+-.+.+.-|....+....+.-|..
T Consensus 80 ~elq~~ks~~Q~e~~v~a~e~--~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~ 157 (330)
T KOG2991|consen 80 DELQLRKSWKQYEAYVQALEG--KYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQ 157 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHH
Q 005641 312 RIK----QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE-----GNLASLQMNMESIMRNREL 382 (686)
Q Consensus 312 ~l~----~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k-----~~ls~lqaE~~~L~qel~~ 382 (686)
... +|-+.| +.=.-..|-.+| +.+++.-..+|..++.++..-+ ..-..+-+--+.|.++-+.
T Consensus 158 qq~Ps~~qlR~~l------lDPAinl~F~rl---K~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeE 228 (330)
T KOG2991|consen 158 QQQPSVAQLRSTL------LDPAINLFFLRL---KGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEE 228 (330)
T ss_pred hhCcHHHHHHHHh------hChHHHHHHHHH---HHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 383 -----TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457 (686)
Q Consensus 383 -----~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~ 457 (686)
++.| +.-|+.+|+--++- ...-+....++-....+|-+.--.+...+--+|.+|.+.+.++..|.+-+..
T Consensus 229 lG~q~s~Gr-ia~Le~eLAmQKs~----seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 229 LGHQASEGR-IAELEIELAMQKSQ----SEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHhhhhccc-HHHHHHHHHHHHhh----HHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005641 458 LEV 460 (686)
Q Consensus 458 LE~ 460 (686)
+..
T Consensus 304 ~sq 306 (330)
T KOG2991|consen 304 VSQ 306 (330)
T ss_pred HHH
No 197
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.22 E-value=1.3e+02 Score=36.59 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=15.5
Q ss_pred cchhhhhhhccccccccc-ccccc
Q 005641 90 ATLAVEKETITTGKTQKN-GEQQQ 112 (686)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-~~~~~ 112 (686)
..+.+|.|.|.|..++.. .+.+.
T Consensus 85 ~~~~teieiLkSr~v~~~VV~~L~ 108 (726)
T PRK09841 85 PESAPEIQLLQSRMILGKTIAELN 108 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhC
Confidence 345678888988888764 44444
No 198
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.16 E-value=16 Score=35.94 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS---- 569 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~s---- 569 (686)
..+..++..++.. +..++.++..|+.+|..+.. ...+.+|...+.+|+.++..-...|+.|.+
T Consensus 75 ~~ld~ei~~L~~e-------l~~l~~~~k~l~~eL~~L~~------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 75 AELDAEIKELREE-------LAELKKEVKSLEAELASLSS------EPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444444 44444444444444444222 233378888888888777777777777754
Q ss_pred ----HHHHHHHHHHHHHHHH
Q 005641 570 ----EKAAAEFQLEKEMNRL 585 (686)
Q Consensus 570 ----Ek~aL~~qLErl~~~~ 585 (686)
|+..+.....+....|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 199
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.84 E-value=99 Score=35.06 Aligned_cols=10 Identities=40% Similarity=0.611 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q 005641 252 QLDEAQGLLK 261 (686)
Q Consensus 252 Qlee~~~~Lr 261 (686)
|||.+...|+
T Consensus 75 qlddi~~qlr 84 (499)
T COG4372 75 QLDDIRPQLR 84 (499)
T ss_pred hHHHHHHHHH
Confidence 4555544433
No 200
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=81.68 E-value=66 Score=32.91 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
|..++.-...|+..+.+++.-+......+...+........-....... +..|...|+.++..+.
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANLA 126 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555556655555555555555555443 5555555665555543
No 201
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.64 E-value=69 Score=33.16 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=11.5
Q ss_pred HHHH-HHHHHHHHHHHhhHHHHHHH
Q 005641 490 AIQM-QAWQDEVERARQGQRDAENK 513 (686)
Q Consensus 490 v~~l-k~Lq~EL~~lR~~~~~lEek 513 (686)
|+.. ++|+..+-++-+..+.|+..
T Consensus 175 Vi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 175 VIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 45555555554444444443
No 202
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.47 E-value=1.4e+02 Score=36.44 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhH
Q 005641 495 AWQDEVERARQGQ 507 (686)
Q Consensus 495 ~Lq~EL~~lR~~~ 507 (686)
.|.+|+..++...
T Consensus 220 ~L~~e~~s~kk~l 232 (916)
T KOG0249|consen 220 RLEQELESVKKQL 232 (916)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 203
>PLN03188 kinesin-12 family protein; Provisional
Probab=81.42 E-value=1.8e+02 Score=37.69 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~ 526 (686)
..++|+++.-.|-.-.+..+.=+.+.+..+.+.=.+-. ... =+.+|-.||..+|... |.+..-+..|-.-|+.
T Consensus 1115 ~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~-~~~---f~~alaae~s~l~~er---eker~~~~~enk~l~~ 1187 (1320)
T PLN03188 1115 QYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGA-ESK---FINALAAEISALKVER---EKERRYLRDENKSLQA 1187 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHH---HHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHH
Confidence 35788888777777777777778887766665311100 111 1245667777777642 2222223333333333
Q ss_pred HHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 527 EMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (686)
Q Consensus 527 qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~ 591 (686)
||.. .++. -+..++|=-||++--+-+.--|.+.-.+..|...+..|++++..+++.+...
T Consensus 1188 qlrd---taea--v~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1188 QLRD---TAEA--VQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred HHhh---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 1111 2345889999999999888888888888999999999999999999877643
No 204
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.05 E-value=1.2e+02 Score=35.38 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 564 LETMASEKAAAEFQLEKEMNRLQEVQSEA 592 (686)
Q Consensus 564 lE~L~sEk~aL~~qLErl~~~~~~e~~~~ 592 (686)
+..+..+-..+-..|+++...|+...+.+
T Consensus 382 l~~f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 382 MRLFVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777766544
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.99 E-value=20 Score=42.36 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
+..|+.+++.|+..+..++.+++.++.++.+.+
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.79 E-value=1.3e+02 Score=36.09 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~ 354 (686)
++||++..|+..+..|+-+.+. +.+|..+..+-|.+|+.-|..
T Consensus 108 ~yQerLaRLe~dkesL~LQvsv-----------LteqVeaQgEKIrDLE~cie~ 150 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSV-----------LTEQVEAQGEKIRDLETCIEE 150 (861)
T ss_pred HHHHHHHHHhcchhhheehHHH-----------HHHHHHHhhhhHHHHHHHHHH
Confidence 5566666666555555544433 344455556667888877764
No 207
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.00 E-value=97 Score=33.83 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHHHHHHhhh
Q 005641 346 ETLVSSIDALKKQAALSEGN 365 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ 365 (686)
.+|....+.+..++...+..
T Consensus 58 ~elr~~rdeineev~elK~k 77 (294)
T COG1340 58 QELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=79.95 E-value=83 Score=33.00 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 330 ~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
....+..-+.+.+.=..-|.-.|..++.++...+..++.+.+...++..++.....+
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555666666666666666666666666666666666665554
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=33 Score=40.60 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=6.0
Q ss_pred CCCCCcccCC
Q 005641 150 ATPNGEILNE 159 (686)
Q Consensus 150 ~~~~~~~~~~ 159 (686)
.+-||+++--
T Consensus 260 ldldGevl~~ 269 (652)
T COG2433 260 LDLDGEVLDL 269 (652)
T ss_pred EecCCcEEee
Confidence 5567776643
No 210
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.59 E-value=75 Score=32.25 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=49.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005641 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438 (686)
Q Consensus 359 l~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQ 438 (686)
|.....+.+++..-|..|.+.++.... .-+.|..+|..++..+.. .+.++..++..+..+...+...+...+
T Consensus 69 LeEEqqR~~~L~qvN~lLReQLEq~~~-~N~~L~~dl~klt~~~~~-------l~~eL~~ke~~~~~ee~~~~~y~~~eh 140 (182)
T PF15035_consen 69 LEEEQQRSEELAQVNALLREQLEQARK-ANEALQEDLQKLTQDWER-------LRDELEQKEAEWREEEENFNQYLSSEH 140 (182)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 333344445554444444444444433 355566666666665543 333344445555555545556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 439 RIADERTAKAGELEQKVAMLEV 460 (686)
Q Consensus 439 rkL~Ee~~ea~eLeeQis~LE~ 460 (686)
..+-..=.++..++.++..|..
T Consensus 141 ~rll~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 141 SRLLSLWREVVALRRQFAELRT 162 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544566777777776643
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.37 E-value=95 Score=35.74 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
+-|++....+.+.+-.|+.++..|.....-|.+.|+.-.
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 455556666677777788888888888888888887643
No 212
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.24 E-value=15 Score=39.63 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hccc-----------hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA--EHYS-----------REEHMELEKRYRELTDLLYYKQTQLE 565 (686)
Q Consensus 499 EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dl--eq~s-----------s~~~~eLE~qlr~Lte~LieKQ~qlE 565 (686)
-+.+||..+.+.+.+|++++.||.+|+.||.+|+.|- +-+. +.....|+.=|-.++..|.+|-.=|+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 3678888888899999999999999999999999764 2222 22222333333334456777777778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 566 TMASEKAAAEFQLEKEMNR 584 (686)
Q Consensus 566 ~L~sEk~aL~~qLErl~~~ 584 (686)
..=.++|.....||-+..-
T Consensus 149 KYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 149 KYFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHHhhhhhhHhHHHHHHHH
Confidence 8888888888888888763
No 213
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.93 E-value=1.3e+02 Score=34.77 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 420 e~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQEL 469 (686)
-.+++....-|.++++..|+.|++-+++-..|.-++.-+.+.+-.|+.+.
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 34556666778889999999999998888888888888888776665543
No 214
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=78.50 E-value=91 Score=32.61 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 304 ELSRSYEARIKQLEQELSVYKSEVTKVES 332 (686)
Q Consensus 304 ek~~~Le~~l~~LQ~eL~~eQ~~~~q~es 332 (686)
.|+..+..++..++..|..+...++..+.
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee 33 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEE 33 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555666666666665555555543
No 215
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=77.90 E-value=1.4e+02 Score=34.41 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005641 567 MASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597 (686)
Q Consensus 567 L~sEk~aL~~qLErl~~~~~~e~~~~ersr~ 597 (686)
..++-..|..+.+-++..+....+.++..|.
T Consensus 349 ~laeYe~L~le~efAe~~y~sAlaaLE~AR~ 379 (434)
T PRK15178 349 SLSLFEDLRLQSEIAKARWESALQTLQQGKL 379 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655555444
No 216
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.89 E-value=98 Score=32.69 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 437 lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
|..++.+...++..|.......+.+...++.++..++....+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444454444555555555555555544443
No 217
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=1.8e+02 Score=35.51 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 543 ~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
..++...++.|...+..=+++++.+....+.+...|+....+...
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888888887777777655333
No 218
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.57 E-value=75 Score=31.62 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEE 297 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe 297 (686)
.++.-+-+..+-+.+...+.
T Consensus 31 VV~vLE~Le~~~~~n~~~~~ 50 (158)
T PF09744_consen 31 VVRVLELLESLASRNQEHEV 50 (158)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 44444444445555544433
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.22 E-value=58 Score=35.60 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 005641 368 SLQMNMESIMRN 379 (686)
Q Consensus 368 ~lqaE~~~L~qe 379 (686)
.++.+...+.++
T Consensus 68 ~LE~e~~~l~~e 79 (314)
T PF04111_consen 68 ELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 220
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.20 E-value=1.4e+02 Score=34.23 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--ccch-----hhhhHHHHHHHHHHHHHHHHH---HHHHHH
Q 005641 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE--HYSR-----EEHMELEKRYRELTDLLYYKQ---TQLETM 567 (686)
Q Consensus 499 EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dle--q~ss-----~~~~eLE~qlr~Lte~LieKQ---~qlE~L 567 (686)
|+.-+.-...+++.+|........+|++.-..+=..|. +.++ ...-+.++.+-++|-.|-+.+ .|||.+
T Consensus 348 E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 348 EVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444456666666666667777665544333331 1111 223455666666666666655 455554
No 221
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.15 E-value=1.1e+02 Score=32.95 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 411 ~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
..+..++.+-.++.+-...+..++..++..++.-+..+..+..-...|+..++.-++||+..+.++..++
T Consensus 148 ~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 148 EERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555554444455555555555444444444444444444444444555555444444444
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.49 E-value=2.3e+02 Score=36.11 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 334 l~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
+...+++.++++..+..++..-..++...+....++
T Consensus 232 ~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki 267 (1141)
T KOG0018|consen 232 ANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKI 267 (1141)
T ss_pred hhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345555555666666655555555554444333333
No 223
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=76.45 E-value=1.2e+02 Score=33.37 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=36.6
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER 303 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ 303 (686)
.|-++....-+.||+++.+|+.=+.. +|..+..++.+...+.+...+.++..+..++
T Consensus 45 QAr~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 45 QARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888888877653 5666666666666666666655555433333
No 224
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.34 E-value=39 Score=29.11 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 294 qLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
.||..+..|+.++.++..+...-+.++..+. ...+.+..+|..+-.++..|...+.++.++++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~----~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLR----RERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666777777777777777777776644 344555566666777777777777777776554
No 225
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.76 E-value=45 Score=28.98 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 343 ~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.+|..|+..+..+.++....+..-..+..++.+|+++.+....|
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555677777888888888888777
No 226
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.50 E-value=1.1e+02 Score=36.76 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 436 ~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQEL 469 (686)
..++++..-+.++..|++|.+.-+.|..++...+
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 3455566666777788888777777665554444
No 227
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=75.46 E-value=1.4e+02 Score=33.14 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHH---
Q 005641 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS---ENAQLEELLVAERELSRSYE-----------ARIK--- 314 (686)
Q Consensus 252 Qlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~---~~aqLEe~~~el~ek~~~Le-----------~~l~--- 314 (686)
++.+....+..+---++-|+.+.. |++...|.+.+ ...-||+++|+++-....+. .++.
T Consensus 36 d~~e~~~~v~~~~kvlq~k~~t~~----kek~~~Q~l~kt~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~ 111 (391)
T KOG1850|consen 36 DNAELKIKVLDYDKVLQVKDLTEK----KEKRNNQILLKTELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAV 111 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333 33334444443 34567887777776554443 2222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 315 -QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 315 -~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
++|-.|...|-.+.+..+. .......+..|..++..+-.++......++....-.+ +++.+-.
T Consensus 112 ~~fqvtL~diqktla~~~~~----n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~ 175 (391)
T KOG1850|consen 112 EQFQVTLKDIQKTLAEGRSK----NDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGK 175 (391)
T ss_pred HHHHhHHHHHHHHHHhcchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 3333333333333332222 2223444555555555555555544444444433333 5544444
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.45 E-value=1.2e+02 Score=32.60 Aligned_cols=30 Identities=0% Similarity=0.041 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 357 KQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 357 qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.+.+..+.++.+++.++..++.++..+..+
T Consensus 66 ~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 66 SKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444
No 229
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.27 E-value=1.8e+02 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=9.6
Q ss_pred cccccCcccccccccccc
Q 005641 128 KDMSKHDADRVEIPETFT 145 (686)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (686)
.+|+.|.++.++|...|.
T Consensus 52 ~~~VR~G~~~a~v~a~F~ 69 (557)
T COG0497 52 ASLVRHGAKRAEVEAIFD 69 (557)
T ss_pred cchhcCCCceeEEEEEec
Confidence 345556666665554443
No 230
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.07 E-value=1.1e+02 Score=33.91 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 005641 573 AAEFQLE 579 (686)
Q Consensus 573 aL~~qLE 579 (686)
.|...|.
T Consensus 342 qW~~dL~ 348 (401)
T PF06785_consen 342 QWETDLQ 348 (401)
T ss_pred HHHHHHH
Confidence 3444443
No 231
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.25 E-value=1.1e+02 Score=31.28 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
+.=...|.--|-.++..+...+..+..+.+...++..++.....
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~ 65 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEE 65 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555555555444
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.74 E-value=68 Score=33.79 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005641 511 ENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~ 530 (686)
++.+..+.-++-+|++.|..
T Consensus 183 eE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHhchhHHHHHHHHHHH
Confidence 33333344444444444443
No 233
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.84 E-value=2e+02 Score=33.80 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 512 NKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 512 ekL~~le~El~~Lr~qle~ 530 (686)
..+..++.++.+++.++..
T Consensus 346 ~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 234
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=72.64 E-value=2.8e+02 Score=35.42 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 540 REEHMELEKRYRELTDLLYYKQTQLETM 567 (686)
Q Consensus 540 s~~~~eLE~qlr~Lte~LieKQ~qlE~L 567 (686)
+.....++..|-.|.+-|++||...=.+
T Consensus 1297 S~~a~Kqk~di~kl~~~lv~kQKAYP~M 1324 (1439)
T PF12252_consen 1297 SDTAQKQKEDIVKLNDFLVEKQKAYPAM 1324 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 3444677889999999999999655444
No 235
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.62 E-value=1.8e+02 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHH
Q 005641 331 ESNLAEALAAKNSEIETLVSSID 353 (686)
Q Consensus 331 esel~~qL~ake~ei~~Le~rL~ 353 (686)
+..+..+....+.++..+...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~ 182 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQIS 182 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333
No 236
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.11 E-value=1e+02 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005641 270 KEARLARVCAGLSSRLQEYKSENAQLE 296 (686)
Q Consensus 270 ke~qLav~~~RLrk~~qel~~~~aqLE 296 (686)
|..++-+++.+|.+....+..+..-|+
T Consensus 9 K~~~lek~k~~i~~e~~~~e~ee~~L~ 35 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVESLENEEKCLE 35 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444444
No 237
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.67 E-value=63 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
++-++.+|.+|..+-..+.+++......-+.+..++..|++++...+.|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778888888888888888888888888999999999999999998
No 238
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.18 E-value=1.6e+02 Score=32.00 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=39.6
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSS---RLQEYKSENAQLEELLVAERELSRSYEARIKQLE 317 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk---~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ 317 (686)
+|=-||..++.|||.+..+=+...= ||--+.+-|.| ...+-+.+.+.|...+.-+.|-|..|+..+..+.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 4445667777777776665444421 11112333332 2334455556666666666666666666666666
Q ss_pred HHH
Q 005641 318 QEL 320 (686)
Q Consensus 318 ~eL 320 (686)
.+|
T Consensus 88 hdl 90 (307)
T PF10481_consen 88 HDL 90 (307)
T ss_pred HHH
Confidence 665
No 239
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.26 E-value=50 Score=27.94 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
+.-+.+-+...+..+-.+|..+++-..+.+.|...+..|..++..
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444555555555554444433
No 240
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.17 E-value=89 Score=36.60 Aligned_cols=58 Identities=26% Similarity=0.365 Sum_probs=26.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 274 Lav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
....|--|.+++....+....+++ .+..+..++..||.+|...+.||...=+.+.++|
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~e-------eL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEE-------ELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444444333333333 2333444555556666555555554444444444
No 241
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.97 E-value=1.5e+02 Score=31.28 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQEL 469 (686)
.++..|+.++..........+.+|
T Consensus 103 ~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 103 EEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555
No 242
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=69.85 E-value=1.6e+02 Score=31.58 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (686)
Q Consensus 266 al~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q 329 (686)
+|..++.+++...++...+..+........+.....+.++.+.++.++.+|...+..++..|..
T Consensus 198 ~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~ 261 (297)
T PF02841_consen 198 QLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ 261 (297)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555555555554455544555666666666666666655555544444
No 243
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.83 E-value=2e+02 Score=32.68 Aligned_cols=30 Identities=13% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 450 ELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 450 eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
.+..++..++.++..++.++..++..+.++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444445555555555555555555554
No 244
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.48 E-value=1.5e+02 Score=31.14 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal 417 (686)
+...+.++..|...+..+..++.........+...-.....+..++... +..+...+..+-..+.. +
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~-i~~l~~~i~~l~~~~~~------------l 113 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF-IQNLQDNIQELIEQVES------------L 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------------h
Confidence 3333444555665666555555555555555555555555555555443 33333333322222211 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 418 ~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
.. ..-.-.+..+..++.++++.|.+.+.+ .+..+....++++.....=|..+
T Consensus 114 ~~-~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 114 NE-NGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred Cc-ccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 00 000012355677788888888887665 36666666666665444433333
No 245
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=68.11 E-value=1.3e+02 Score=31.59 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 509 DAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~ 530 (686)
+++.+|..++.+..+|++-++.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~k 157 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEK 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555544443
No 246
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.90 E-value=52 Score=34.62 Aligned_cols=81 Identities=23% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005641 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMAL 434 (686)
Q Consensus 355 l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL 434 (686)
+.+.+...|.++.+++.++.-|..+++.++.. +...+ .|..+|+.+|+.|.+-+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e-~ee~~-------------------------erlk~le~E~s~LeE~~ 186 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAE-YEEVQ-------------------------ERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------------------------HHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666655553 22222 44556677776666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 435 ARIQRIADERTAKAGELEQKVAMLEVE 461 (686)
Q Consensus 435 ~~lQrkL~Ee~~ea~eLeeQis~LE~E 461 (686)
..+-......+.+..+|+..+..++.+
T Consensus 187 ~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 187 KKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HhchhHHHHHHHHHHHhcccccchHHH
Confidence 555555555555666666665555544
No 247
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.64 E-value=2e+02 Score=31.70 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~q 577 (686)
..+..+...+...+..|...+.++.+++..+..++..++.. ......|+.++......|..=+.-+..|.+|+.-|..+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~-~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~ 299 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA-QKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQ 299 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHH
Confidence 33333333333344444444444444444444433322211 11234455555555555555555666666666666665
Q ss_pred HHHHHHH
Q 005641 578 LEKEMNR 584 (686)
Q Consensus 578 LErl~~~ 584 (686)
++.+..+
T Consensus 300 ~~~l~~~ 306 (344)
T PF12777_consen 300 IEELEEQ 306 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 248
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.16 E-value=1.7e+02 Score=30.62 Aligned_cols=18 Identities=6% Similarity=0.329 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005641 513 KLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 513 kL~~le~El~~Lr~qle~ 530 (686)
.+......+.+++..+..
T Consensus 85 ~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 85 RIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444433
No 249
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=67.16 E-value=1.4e+02 Score=32.66 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 367 ASLQMNMESIMRNRELTET 385 (686)
Q Consensus 367 s~lqaE~~~L~qel~~~ek 385 (686)
.....+...|+.+++..+.
T Consensus 274 ~~~~~~~~~L~re~~~a~~ 292 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQ 292 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555444
No 250
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=66.89 E-value=2.6e+02 Score=32.85 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=25.4
Q ss_pred HhhhhcCCCCchhhh---hHHHHHHHHHhhhhccchHHHHHHHHHH
Q 005641 237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLARVCA 279 (686)
Q Consensus 237 ~~~~~~~ek~~~lqk---Qlee~~~~LrsE~eal~~ke~qLav~~~ 279 (686)
.++.-.-+|...+.+ +|+---+.||+|.=+-..|+.++--.|+
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~ 204 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCV 204 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 444444455554444 4555566777776666677777774443
No 251
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.85 E-value=88 Score=27.33 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=39.6
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 339 ~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.-++.+|.+|..+...+.+++.......+.++.++++|++++.-.+.|
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888887888888888999999999998888
No 252
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=66.78 E-value=1.7e+02 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 372 NMESIMRNRELTETRMIQALREELASVERRAEEE 405 (686)
Q Consensus 372 E~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE 405 (686)
....|++.|-.++.+|+ .|+.++...++.+=.|
T Consensus 58 ~~~~L~~~LrEkEErIL-aLEad~~kWEqkYLEE 90 (205)
T PF12240_consen 58 NASNLKELLREKEERIL-ALEADMTKWEQKYLEE 90 (205)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45678888999999855 5888889888888433
No 253
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.47 E-value=2.4e+02 Score=32.18 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005641 310 EARIKQLEQELSVYKSEVTKVES 332 (686)
Q Consensus 310 e~~l~~LQ~eL~~eQ~~~~q~es 332 (686)
+..+..||....++-.-+++..+
T Consensus 351 QkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 351 QKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555554554443
No 254
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.20 E-value=2.1e+02 Score=31.43 Aligned_cols=33 Identities=33% Similarity=0.293 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 543 ~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~ 589 (686)
.+-|+-||+.| ..|+..|.-|+.++...+....
T Consensus 214 ~g~LDvRLkKl--------------~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 214 DGSLDVRLKKL--------------ADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred CCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888 7888888888888887766544
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=65.90 E-value=1.7e+02 Score=30.39 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
+.+++.=...|.--|..++..+...+..++.+.+...++.+.+...+.+
T Consensus 19 ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~ 67 (222)
T PRK10698 19 LEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ 67 (222)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555666666667777777777666554
No 256
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.55 E-value=2.2e+02 Score=31.51 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=24.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 357 qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
+-+...+.+-..+..|...|.+++.+.+.. +..|+..++..+...
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD-~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGD-IKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhhhhh
Confidence 334444555555555666666666666664 445555555544443
No 257
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.90 E-value=2.4e+02 Score=31.62 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 304 ELSRSYEARIKQLEQELSVYKSEVTK 329 (686)
Q Consensus 304 ek~~~Le~~l~~LQ~eL~~eQ~~~~q 329 (686)
.....|+.++..++.+|...+..+..
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444443
No 258
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.71 E-value=1.7e+02 Score=29.77 Aligned_cols=89 Identities=26% Similarity=0.346 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAE-------------RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 272 ~qLav~~~RLrk~~qel~~~~aqLEe~~~el-------------~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
...|-++.+|+--...+++..+-||..+..- .+-+..|+..+..|+.+-.+ =.++.++-..+.++|
T Consensus 12 q~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR-~~~L~qvN~lLReQL 90 (182)
T PF15035_consen 12 QRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQR-SEELAQVNALLREQL 90 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 3456678888888888888888888755211 11123344444444444322 112333344455555
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHH
Q 005641 339 AAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 339 ~ake~ei~~Le~rL~~l~qel~~ 361 (686)
......+..|...|..+..++..
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444443
No 259
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.69 E-value=96 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 561 QTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 561 Q~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
....+.|..|++++.-+|..+..++++
T Consensus 45 ~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 45 KEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444578999999999988887764
No 260
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.60 E-value=2.4e+02 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 360 ALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (686)
Q Consensus 360 ~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe 392 (686)
...+..+.++..+.....+++...|+.|=+.++
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666777777777777775333333
No 261
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.72 E-value=3e+02 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 540 s~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
.++...+=.+|--|--.++.|...+|-|..-...|...+.+-..
T Consensus 473 qqDka~lierivrLQ~a~arknekiefLe~h~~qlveevQKktK 516 (613)
T KOG0992|consen 473 QQDKADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTK 516 (613)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888899999999998888888877777443
No 262
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=63.53 E-value=1.9e+02 Score=30.00 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 288 l~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
++-+...||+.+.--++++..+..++..+.+.-..
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE 43 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADE 43 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 34445555555555566666666666666555443
No 263
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=63.00 E-value=1e+02 Score=28.67 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (686)
Q Consensus 518 e~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~e 593 (686)
-.+-.+|+.+...++... .+.......|++.|-.|-..|-.+..|..+|.|+-..|..+...-+.+.+
T Consensus 4 a~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655422 34455667899999999999999999999999999999988777666554
No 264
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.88 E-value=2.8e+02 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 412 TKMAAMEREVELEHRAAEASMALARIQRIADER 444 (686)
Q Consensus 412 Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee 444 (686)
.+.+.+.++.++.+..++..++.-.+++...+.
T Consensus 91 ~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~ 123 (459)
T KOG0288|consen 91 LRIRSLNEIRELREQKAEFENAELALREMRRKM 123 (459)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 344555666666666666666665555554433
No 265
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.85 E-value=1.5e+02 Score=28.57 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
.+.+.|..+-.++.++-..|..
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~ 61 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSS 61 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444433
No 266
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.34 E-value=2e+02 Score=29.79 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
++..|+...+.|+..-.+++++-.+.
T Consensus 178 e~~~L~~~~~~Le~qk~~L~~eq~~~ 203 (206)
T PF14988_consen 178 EAQKLEARKSQLEKQKQQLQQEQWYL 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 267
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=4e+02 Score=33.37 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 280 RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~ese 333 (686)
|++-.-+.+.+...++|+ .+..|+.+....+......|..|...-.+
T Consensus 554 r~rq~~~~~r~~ld~lea-------a~e~lE~r~~~~e~~~~e~~se~e~~l~~ 600 (984)
T COG4717 554 RIRQHWQQLRKALDQLEA-------AYEALEGRFAAAEAAMAEWQSEWEEALDE 600 (984)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 555555556666666664 45556666666667766666666665544
No 268
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.46 E-value=1e+02 Score=26.50 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 341 ke~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
++.++..|+.+++.+.+++.........+..|++.+...+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766666665555444454454444444444
No 269
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.32 E-value=1.1e+02 Score=26.67 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
.|.+.+..||+...+=+.+|...=.++...++....++..|..++..+-+++..+...++.+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566777777777777777777777777777777777777777777777666555443
No 270
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=60.97 E-value=1.7e+02 Score=33.67 Aligned_cols=51 Identities=27% Similarity=0.280 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhH
Q 005641 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366 (686)
Q Consensus 312 ~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~l 366 (686)
-+..||.+|...+..+..+...+ .--.-++..|+.+|.++++++...+.++
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~~----~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVNG----LDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 34466666666666666554421 1112334555555555555555444443
No 271
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.89 E-value=2.2e+02 Score=29.89 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHHHHHH-HH-------HHHHH
Q 005641 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPEEANQAI-QM-------QAWQD 498 (686)
Q Consensus 428 aeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~-qk~e~~~a~qv~-~l-------k~Lq~ 498 (686)
-.|..++-.++..+.+.+..+..+--....++.++..++.....++.+..-. ....-.+|..+. .. ..++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777888888888888777766653 223333444422 22 23333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (686)
Q Consensus 499 EL~~lR~~~~~lEekL~~le~El~~Lr~qle~l 531 (686)
++..++.....++..+..++..|.+++.+...+
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433344444444444444444444443
No 272
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.88 E-value=2.9e+02 Score=31.75 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 440 kL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
.+.-.+.+...+..++...|.++..||.|...+..+.-+
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555566666666665555544433
No 273
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.73 E-value=2.2e+02 Score=29.75 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=6.1
Q ss_pred hhhHHHHHHHhhhch
Q 005641 639 DSGAVRATRFLWRYP 653 (686)
Q Consensus 639 Ds~~ir~g~fLRR~P 653 (686)
+...+.-|+||+.+-
T Consensus 253 ~~~~f~~~v~lLn~n 267 (302)
T PF10186_consen 253 DRQRFEYAVFLLNKN 267 (302)
T ss_pred cHHHHHHHHHHHHHH
Confidence 333344444444333
No 274
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.34 E-value=4.6e+02 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 567 MASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 567 L~sEk~aL~~qLErl~~~~~~ 587 (686)
+...++-|.-.|+.+..+...
T Consensus 893 l~~~ke~w~~~le~~V~~In~ 913 (1072)
T KOG0979|consen 893 LSDVKEVWLPKLEEMVEQINE 913 (1072)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 466677777777777765554
No 275
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.87 E-value=1.1e+02 Score=25.96 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005641 317 EQELSV 322 (686)
Q Consensus 317 Q~eL~~ 322 (686)
|++|..
T Consensus 3 QsaL~~ 8 (61)
T PF08826_consen 3 QSALEA 8 (61)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 334433
No 276
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.19 E-value=2e+02 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
-.-++|..++.++...-+-+...|
T Consensus 98 v~naQLDNek~~l~yqvd~Lkd~l 121 (302)
T PF09738_consen 98 VSNAQLDNEKSALMYQVDLLKDKL 121 (302)
T ss_pred HHHhhhchHHHHHHHHHHHHHHHH
Confidence 344566666666666655554444
No 277
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.73 E-value=3.4e+02 Score=31.00 Aligned_cols=11 Identities=36% Similarity=0.287 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 005641 376 IMRNRELTETR 386 (686)
Q Consensus 376 L~qel~~~ekR 386 (686)
+++-++.-++|
T Consensus 303 i~E~~Es~qtR 313 (395)
T PF10267_consen 303 IWEVMESCQTR 313 (395)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 278
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=57.61 E-value=63 Score=34.39 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 431 seAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
..++.+++..++..+.++..|+-+++.+.+++++++++-.++-.++.+
T Consensus 53 ~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 53 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888888887777776666555554
No 279
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=57.47 E-value=3.8e+02 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~L 348 (686)
++..+.+.+.++.+-....+.+++..+.++..+|+.+...+..-
T Consensus 100 rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqe 143 (531)
T PF15450_consen 100 RLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQE 143 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44445566666667777777777888888888887766665543
No 280
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.62 E-value=3.6e+02 Score=31.03 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005641 420 EVELEHRAAEASMALARIQRIADERTAKAG-----ELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQ 494 (686)
Q Consensus 420 e~eLEeEnaeLseAL~~lQrkL~Ee~~ea~-----eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk 494 (686)
...|..+...|..-+..+|..+++.+..|. =...++..+..++..+..+|..|+.-+...+ -.=.+
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k---------p~WkK 278 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK---------PIWKK 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------HHHHH
Confidence 344445555555556667776666653333 3444455555666666666666665555543 11115
Q ss_pred HHHHHHHHHHhhH
Q 005641 495 AWQDEVERARQGQ 507 (686)
Q Consensus 495 ~Lq~EL~~lR~~~ 507 (686)
-|+.||...-+.+
T Consensus 279 iWE~EL~~V~eEQ 291 (424)
T PF03915_consen 279 IWESELQKVCEEQ 291 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788888765544
No 281
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=55.53 E-value=1.8e+02 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (686)
Q Consensus 422 eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El 462 (686)
.|+.|......++..++.+...+..+.+.|..+|..++.+.
T Consensus 46 Ql~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei 86 (153)
T PF15175_consen 46 QLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIESEI 86 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888888888888888888776443
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.20 E-value=94 Score=36.01 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel 359 (686)
+++.++..++.++.+....+ +.+++.|+..|..+++++
T Consensus 102 ~i~~av~~~~~~~~~~~~ql-------~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 102 QIQQAVQSETQELTKEIEQL-------KSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45555555554444444333 333344444444444433
No 283
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=54.44 E-value=4.4e+02 Score=31.31 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 005641 391 LREELASVERRAEE 404 (686)
Q Consensus 391 Le~eLkslq~~lEq 404 (686)
+=..|..|+.|+..
T Consensus 227 lP~ql~~Lk~Gyr~ 240 (570)
T COG4477 227 LPGQLQDLKAGYRD 240 (570)
T ss_pred chHHHHHHHHHHHH
Confidence 33556666666643
No 284
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.24 E-value=2.7e+02 Score=28.78 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=25.0
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 280 GLSSRLQE---YKSENAQLEELLVAERELSRSYEARIKQ 315 (686)
Q Consensus 280 RLrk~~qe---l~~~~aqLEe~~~el~ek~~~Le~~l~~ 315 (686)
||+-...| |+--|..|-+-+++|++.|+.|..-+..
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqK 87 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQK 87 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 45444444 5556677777888999999999875443
No 285
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=54.10 E-value=5.1e+02 Score=31.98 Aligned_cols=53 Identities=32% Similarity=0.393 Sum_probs=33.3
Q ss_pred hhHHHhhhhcCCCCc-hhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHH
Q 005641 233 NKRKQQALKADDPPT-KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289 (686)
Q Consensus 233 ~~~~~~~~~~~ek~~-~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~ 289 (686)
-.=++|=.||.+.-+ -.+-=|.++..+|+.|++. +=-=|.....|+..+.-|+
T Consensus 439 ekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~----e~S~A~~~~gLk~kL~~Lr 492 (762)
T PLN03229 439 EKLKEQILKAKESSSKPSELALNEMIEKLKKEIDL----EYTEAVIAMGLQERLENLR 492 (762)
T ss_pred HHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHHH
Confidence 344667777732222 2333789999999999752 2233566677777776666
No 286
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=53.92 E-value=2.4e+02 Score=28.12 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407 (686)
Q Consensus 363 k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~ 407 (686)
+...+.+..+...|+.++..+..+ |+.++..++...-.+.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~----L~~ei~~l~a~~klD~n 112 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQE----LREEINKLRAEVKLDLN 112 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456666777777777777777665 66666666665544433
No 287
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.62 E-value=4.3e+02 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 005641 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (686)
Q Consensus 513 kL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieK 560 (686)
.+..+-....+++.++..+.. ....-..|+.++..+.+.+...
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~-----~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDD-----SDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554221 1122244555555555444333
No 288
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=52.49 E-value=26 Score=38.63 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (686)
Q Consensus 283 k~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~e 331 (686)
+++..|...++.|-.-+..+..++..|+..+..+...+...+.++....
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs 83 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS 83 (326)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444433
No 289
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.22 E-value=3.1e+02 Score=28.93 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005641 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRD 534 (686)
Q Consensus 505 ~~~~~lEekL~~le~El~~Lr~qle~lk~d 534 (686)
.......+.+..+..++..|.+++..++.+
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555566666666655544
No 290
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=52.09 E-value=6.8e+02 Score=32.84 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~e 331 (686)
++.+...+....++.+..+.--++.+..++.++...+..+.........-+
T Consensus 214 ~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~ 264 (1294)
T KOG0962|consen 214 LKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555666666665555555544444443333
No 291
>PF15294 Leu_zip: Leucine zipper
Probab=52.00 E-value=3.5e+02 Score=29.48 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005641 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (686)
Q Consensus 304 ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ 383 (686)
..|...-..+..++.+|...|........ ...+.....++.+|+.++.++.-++... +.........|...+...
T Consensus 153 ~~at~~l~Ek~kl~~~L~~lq~~~~~~~~--k~~~~~~~q~l~dLE~k~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 153 KQATSALDEKSKLEAQLKELQDEQGDQKG--KKDLSFKAQDLSDLENKMAALKSELEKA---LQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccccccccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444555666666665541111111 1223445666777777777765443322 333334455666666664
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 005641 384 ETRMIQALREELASVERRAEE---ERAAHNATK 413 (686)
Q Consensus 384 ekRilqsLe~eLkslq~~lEq---E~~aHs~Tr 413 (686)
-.. +-.....|..+...++. +...+.+++
T Consensus 228 Khe-lL~~QeqL~~aekeLekKfqqT~ay~NMk 259 (278)
T PF15294_consen 228 KHE-LLRVQEQLSLAEKELEKKFQQTAAYRNMK 259 (278)
T ss_pred HHH-HHhcchhhhcchhhHHHHhCccHHHHHhH
Confidence 333 22222335555444443 344444444
No 292
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.81 E-value=2.3e+02 Score=27.31 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
.|.+....+-..|...-+.+...+..+..|+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRI 70 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRI 70 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333
No 293
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.50 E-value=6.9e+02 Score=32.74 Aligned_cols=12 Identities=25% Similarity=-0.061 Sum_probs=6.8
Q ss_pred CCCCCCCCcchh
Q 005641 35 TPASNGQGSQAK 46 (686)
Q Consensus 35 ~~~~~~~~~~~k 46 (686)
+-+.||+.+.+.
T Consensus 472 p~~~n~~y~t~~ 483 (1320)
T PLN03188 472 PTNPNVAYSTAW 483 (1320)
T ss_pred CCCCCcccccch
Confidence 334466666655
No 294
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.22 E-value=1.7e+02 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 566 TMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 566 ~L~sEk~aL~~qLErl~~~~~~ 587 (686)
.|..|.++|.-+|-.+.+++++
T Consensus 57 qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 57 HLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3478888888888888776543
No 295
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=50.75 E-value=4.9e+02 Score=30.78 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 005641 271 EARLARVCAGLSSRLQEYKSENAQLEELLV-AERELSRSYEARIK 314 (686)
Q Consensus 271 e~qLav~~~RLrk~~qel~~~~aqLEe~~~-el~ek~~~Le~~l~ 314 (686)
+-..|++.+++-+.-.|+..+.-.-|..+. .++-....|+..++
T Consensus 166 d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mk 210 (531)
T PF15450_consen 166 DNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMK 210 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777778888888888877777776433 33444444444443
No 296
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.41 E-value=2.2e+02 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 436 ~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~ 474 (686)
+++..++........+++++..+.....++..++...+.
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777777766666655555555443
No 297
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=50.31 E-value=3.9e+02 Score=29.50 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred hhhhcCCCCchhhhhHHHHHHHHHhhhhccchH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 238 QALKADDPPTKEQDQLDEAQGLLKTTISTGQSK---EARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIK 314 (686)
Q Consensus 238 ~~~~~~ek~~~lqkQlee~~~~LrsE~eal~~k---e~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~ 314 (686)
-+-++++-.|-+++ .|.+-+++..=+ +-=|--+++-++-..-.|+....|++.+-...-+++.....-++
T Consensus 179 aQ~~a~~d~N~~~~-------vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ld 251 (384)
T KOG0972|consen 179 AQGLATEDKNPLQS-------VLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLD 251 (384)
T ss_pred hhcccccccChHHH-------HHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 33456777777776 333333321111 12233345566667778888888888876555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
.|-.+..+.-+-..+++.-++.+|+.+=.+-..+...+++++..++.
T Consensus 252 klh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 252 KLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555556666666555544444444444444444444433
No 298
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=4.7e+02 Score=30.46 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=6.5
Q ss_pred hhhhhHHHHHHH
Q 005641 540 REEHMELEKRYR 551 (686)
Q Consensus 540 s~~~~eLE~qlr 551 (686)
++.+..|.++||
T Consensus 508 rqen~~L~~~iR 519 (521)
T KOG1937|consen 508 RQENDQLFSEIR 519 (521)
T ss_pred HHHHHHHHHHHh
Confidence 444555555655
No 299
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.80 E-value=3.9e+02 Score=29.36 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 545 eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
++-..+.++.+.++..|..|..+.....+|....-....
T Consensus 218 e~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~ 256 (294)
T COG1340 218 ELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKR 256 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555554444443
No 300
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.43 E-value=6.3e+02 Score=31.38 Aligned_cols=20 Identities=0% Similarity=0.089 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005641 371 MNMESIMRNRELTETRMIQA 390 (686)
Q Consensus 371 aE~~~L~qel~~~ekRilqs 390 (686)
.|+.++...+.++...++.+
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~ 488 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLEN 488 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44555555444444443333
No 301
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.39 E-value=3.2e+02 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
.+..|+..+.+.+.-+..+...+...+...
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq~na 97 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQANA 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 302
>PRK11519 tyrosine kinase; Provisional
Probab=48.32 E-value=5.8e+02 Score=31.00 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=16.0
Q ss_pred chhhhhhhccccccccc-ccccc
Q 005641 91 TLAVEKETITTGKTQKN-GEQQQ 112 (686)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~ 112 (686)
.+.+|.|.|.|..+... .+++-
T Consensus 86 ~~~tEieILkSr~v~~~VV~~L~ 108 (719)
T PRK11519 86 ASDAEIQLIRSRLVLGKTVDDLD 108 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHhC
Confidence 57788899999988864 44443
No 303
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.09 E-value=6.9e+02 Score=31.75 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 549 qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~ 585 (686)
.+..+...+..-+.++..+..+...+..+++.+..+|
T Consensus 543 ~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l~q~w 579 (1042)
T TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCD 579 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555554444
No 304
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=47.86 E-value=3e+02 Score=27.51 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred hhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHH
Q 005641 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQ 286 (686)
Q Consensus 229 ~~~~~~~~~~~~~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~q 286 (686)
.+++.-+.+...+..+.+..+..-++++...|.........+..+|..-..+|....+
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~ 64 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 3555666667776666666666666666666655554444444455444444444433
No 305
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.85 E-value=3.5e+02 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEAR 475 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~e 475 (686)
++.+..+-..|..++++++.+++.++..
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666555543
No 306
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.79 E-value=3.1e+02 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 450 ELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 450 eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
.++..+..|..++..++.++..++.++...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 307
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=47.74 E-value=6.6e+02 Score=31.47 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (686)
Q Consensus 364 ~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq 399 (686)
..+++..-+++.+-.+.+.++..|+|..+++|-..+
T Consensus 1009 selEe~kKe~eaiineiee~eaeIiQekE~el~e~e 1044 (1424)
T KOG4572|consen 1009 SELEEKKKELEAIINEIEELEAEIIQEKEGELIEDE 1044 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 344444445555566666666667776665544433
No 308
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.00 E-value=3.7e+02 Score=32.20 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEV 521 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El 521 (686)
-.-|+.++..|+.+++.+++++.+.+++..- -+.++.--+...+.-..|+++..=....+.++|.+|+.-+
T Consensus 352 k~Klee~i~elEEElk~~k~ea~~ar~~~~~---~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 352 KLKLEEKIRELEEELKKAKAEAEDARQKAKD---DEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456777888888899999988877654221 1111111122222334666666555556677777666653
No 309
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.93 E-value=5.3e+02 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (686)
Q Consensus 283 k~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL 320 (686)
+....|+-.+..-+..+.+|+-...-|+.+...||-..
T Consensus 317 EvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~ 354 (527)
T PF15066_consen 317 EVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKI 354 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 33444444444455555555555556666666666554
No 310
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.75 E-value=2.7e+02 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=12.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 502 RARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 502 ~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
.++.........+......+..+..+|..
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~ 51 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIV 51 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333444444444444444444
No 311
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.67 E-value=4.7e+02 Score=29.47 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 005641 327 VTKVESNLAEALAAKNSEIETL 348 (686)
Q Consensus 327 ~~q~esel~~qL~ake~ei~~L 348 (686)
.++++......|.+.+....-|
T Consensus 98 cKnmQe~~~s~LaAaE~khrKl 119 (561)
T KOG1103|consen 98 CKNMQENAASLLAAAEKKHRKL 119 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555544333
No 312
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.66 E-value=5.4e+02 Score=30.12 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 364 GNLASLQMNMESIMRNRELTETRMIQALREE 394 (686)
Q Consensus 364 ~~ls~lqaE~~~L~qel~~~ekRilqsLe~e 394 (686)
.+++.++...++|..+...++.+|++.....
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~ 129 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRR 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666665543
No 313
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.42 E-value=2.2e+02 Score=27.96 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYE--------ARIKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le--------~~l~~LQ~eL~~eQ~~~~q~ese 333 (686)
.++.....+|+..+..+.+++..|+ ..+..++......+..|..+...
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555455555555444 34446666666666666655543
No 314
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.16 E-value=3.5e+02 Score=27.83 Aligned_cols=44 Identities=9% Similarity=0.026 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
+.=...|.--+..+...+...+..++.+.+...++.+++...+.
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~ 66 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEA 66 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555555555555555555555555444
No 315
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.11 E-value=2e+02 Score=33.37 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 005641 393 EELASVERRA 402 (686)
Q Consensus 393 ~eLkslq~~l 402 (686)
.+|..++..+
T Consensus 159 ~~l~~l~~~l 168 (525)
T TIGR02231 159 KQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 316
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.61 E-value=1.3e+02 Score=30.38 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (686)
Q Consensus 248 ~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~ 327 (686)
+.|..|......|..+++. +..-|+....++..+.+.|| ..+.++..|.++-..|+.+|.+-+.+|
T Consensus 102 QVqqeL~~tf~rL~~~Vd~----------~~~eL~~eI~~L~~~i~~le----~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ----------TKNELEDEIKQLEKEIQRLE----EIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555543 34444444445555555555 345566677777777777776655444
No 317
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.19 E-value=3.9e+02 Score=28.09 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
+.+++.+.+.....+..++.++..++...+.++.|.++|.++.+.++.+
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3344444455555556666666666666666777777777776666654
No 318
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=44.83 E-value=5.3e+02 Score=29.46 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (686)
Q Consensus 246 ~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~ 325 (686)
++......+++-+.||.-++......+.|.|.+.-+-...+.........+- +-+.+-..+++.-..-..-.-.|+.
T Consensus 276 P~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K---EAqareaklqaec~rQ~qlaLEEKa 352 (442)
T PF06637_consen 276 PKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK---EAQAREAKLQAECARQTQLALEEKA 352 (442)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 005641 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (686)
Q Consensus 326 ~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~ 360 (686)
.++...+.+.+.|+.++-+.+-|...+..-..-++
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
No 319
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=44.05 E-value=5.5e+02 Score=29.50 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 300 ~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
.-+.+....|..+-...+.++..==.+|....+.|..++.+.-.+|...+..|..+++-+..
T Consensus 256 ~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~aird 317 (421)
T KOG2685|consen 256 QTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRD 317 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 34455555666666666666666666677777777777777777777777777766655543
No 320
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.75 E-value=5.2e+02 Score=29.06 Aligned_cols=41 Identities=32% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (686)
Q Consensus 427 naeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQ 467 (686)
+.++.+.+.+-...++....-+..|+.++..|-+|.+.+-|
T Consensus 182 ~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 182 NDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666666666666677777777777777665544
No 321
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.55 E-value=3.2e+02 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=11.8
Q ss_pred cccchhhchhHHHhhhhcCCCCchhh
Q 005641 225 DVKVETLSNKRKQQALKADDPPTKEQ 250 (686)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ek~~~lq 250 (686)
|+|.-..-++....=|. ++|.+...
T Consensus 97 dmky~~~~~kr~~~fH~-dD~~ItVe 121 (575)
T KOG4403|consen 97 DMKYRDSTRKRSEKFHG-DDKHITVE 121 (575)
T ss_pred HhhcccchhhhhhhccC-CccceeHH
Confidence 34444333444444454 66655544
No 322
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=43.45 E-value=3.3e+02 Score=30.15 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccCCCCccc---
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLH--- 620 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr~s~~~~~~~~dd~~~~~l~P~~~~--- 620 (686)
.+|..|+.+| ..|+.+|..+|-|+.--+ -|+.....+-|-|+++ ..-|+-..
T Consensus 62 rdYqrq~~el--------------neEkrtLeRELARaKV~a---------NRVA~vvANEWKD~nD--kvMPVKqWLEE 116 (351)
T PF07058_consen 62 RDYQRQVQEL--------------NEEKRTLERELARAKVSA---------NRVATVVANEWKDEND--KVMPVKQWLEE 116 (351)
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHhhhhh---------hhhhhhhcccccccCC--ccccHHHHHHH
Confidence 5777777777 999999999988876411 1344445678988763 23243222
Q ss_pred cccchhhhHHHHHHhhhhhhhH
Q 005641 621 HRHIAGASVQLQKAAKLLDSGA 642 (686)
Q Consensus 621 ~~~~~~~~~rvk~a~s~lDs~~ 642 (686)
.+++-|...+++.-+.+-++.+
T Consensus 117 RR~lQgEmQ~LrDKLAiaERtA 138 (351)
T PF07058_consen 117 RRFLQGEMQQLRDKLAIAERTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666665554
No 323
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.28 E-value=4e+02 Score=27.60 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 005641 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (686)
Q Consensus 287 el~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~ 353 (686)
.+...+.+||..+..++..+..+...+..+-.. ++..+......|..++..-.++-.+.-
T Consensus 133 aW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~-------RK~~Q~~~~~~L~~Le~~W~~~v~kn~ 192 (221)
T PF05700_consen 133 AWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRE-------RKRRQEEAGEELRYLEQRWKELVSKNL 192 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466667777775555444444444444433333 344444444444333333344443333
No 324
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.02 E-value=1.9e+02 Score=33.60 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 568 ASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 568 ~sEk~aL~~qLErl~~~~~ 586 (686)
..++..+.-+|..+..+++
T Consensus 122 ~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555554
No 325
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.46 E-value=2.1e+02 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.047 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhccchHHH
Q 005641 253 LDEAQGLLKTTISTGQSKEA 272 (686)
Q Consensus 253 lee~~~~LrsE~eal~~ke~ 272 (686)
-|+....|..|++.|+.++-
T Consensus 10 KDe~Ia~L~eEGekLSk~el 29 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKEL 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777777775444333
No 326
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.00 E-value=4.3e+02 Score=27.64 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLE 317 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ 317 (686)
.++.++....+..+...|...++.+......|+....+++
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333333333333333
No 327
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=41.84 E-value=8.6e+02 Score=31.10 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhh
Q 005641 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (686)
Q Consensus 313 l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ 365 (686)
+...-.+|...+.+.++.+.. ++...+.+.-|+.+++.+.+.+.....+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~----~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDK----LTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333 3445555666666676666666665544
No 328
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.63 E-value=8e+02 Score=30.64 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=52.2
Q ss_pred hcCCCCchhhhhHHHHHHHHHh----------h-----------hhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKT----------T-----------ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL 299 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~Lrs----------E-----------~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~ 299 (686)
+-..-.+.+..++|.+....|. + +..+++|+.|...-..||++.+.++-.+.+.-|+
T Consensus 865 e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEa-- 942 (1259)
T KOG0163|consen 865 EIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREA-- 942 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--
Confidence 3344556677788888777763 1 2456667777777777888888877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005641 300 VAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 300 ~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
+.+++....+++...++.+..+
T Consensus 943 -eek~rre~ee~k~~k~e~e~kR 964 (1259)
T KOG0163|consen 943 -EEKRRREEEEKKRAKAEMETKR 964 (1259)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH
Confidence 5566555555555555555544
No 329
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=41.45 E-value=4.2e+02 Score=27.39 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 413 KMAAMEREVELEHRAA----EASMALARIQRIADERTAKAGELEQK 454 (686)
Q Consensus 413 r~eal~Re~eLEeEna----eLseAL~~lQrkL~Ee~~ea~eLeeQ 454 (686)
+.+++.|....|.++. .-+..|.+..+.++.-..++..|+.-
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~ 63 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEV 63 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555541 11333444444555444444444443
No 330
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.37 E-value=4.9e+02 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 005641 344 EIETLVSSIDALKKQAALSEGNLASLQM 371 (686)
Q Consensus 344 ei~~Le~rL~~l~qel~~~k~~ls~lqa 371 (686)
.-..|..+|.--..++++...++..++.
T Consensus 191 de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 191 DEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666665555556666666666655
No 331
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=41.18 E-value=1.8e+02 Score=25.70 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETM 567 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L 567 (686)
+++++..+..+.++|++.+..+...+ +......|+..|+.|-..+..|-.||-.|
T Consensus 22 LqDE~~hm~~e~~~L~~~~~~~d~s~---~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 22 LQDEFGHMKMEHQELQDEYKQMDPSL---GRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555533222 12233789999999999999998888766
No 332
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.58 E-value=3e+02 Score=25.42 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (686)
Q Consensus 435 ~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el 476 (686)
+++++.|+=...++.-+++.+..++.+-+++..+|..|+.+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555677777777777777777777777666543
No 333
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=40.58 E-value=4.5e+02 Score=27.45 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 005641 333 NLAEALAAKNSEIETLVSSIDALKKQAA 360 (686)
Q Consensus 333 el~~qL~ake~ei~~Le~rL~~l~qel~ 360 (686)
.+...|--+++.|=.|++.+.-+++++-
T Consensus 61 ~L~~~LrEkEErILaLEad~~kWEqkYL 88 (205)
T PF12240_consen 61 NLKELLREKEERILALEADMTKWEQKYL 88 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777776666663
No 334
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.17 E-value=21 Score=32.04 Aligned_cols=17 Identities=0% Similarity=-0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 657 IILLFYLKSFAGICTSL 673 (686)
Q Consensus 657 l~~l~Y~vlLHlwV~~v 673 (686)
+.||+.++.||+|-=|.
T Consensus 68 vgFIasV~~LHi~gK~~ 84 (88)
T KOG3457|consen 68 VGFIASVFALHIWGKLT 84 (88)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78999999999997543
No 335
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.08 E-value=1.7e+02 Score=25.56 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=5.2
Q ss_pred HHHHHHHHHhH
Q 005641 342 NSEIETLVSSI 352 (686)
Q Consensus 342 e~ei~~Le~rL 352 (686)
+..+..|-+++
T Consensus 66 QerlrsLLGkm 76 (79)
T COG3074 66 QERLRALLGKM 76 (79)
T ss_pred HHHHHHHHhhh
Confidence 33335555554
No 336
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=39.92 E-value=46 Score=36.77 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 005641 391 LREELASVE 399 (686)
Q Consensus 391 Le~eLkslq 399 (686)
|+.++++++
T Consensus 145 Le~RV~~LE 153 (326)
T PF04582_consen 145 LESRVKALE 153 (326)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333344433
No 337
>PRK11519 tyrosine kinase; Provisional
Probab=39.10 E-value=7.9e+02 Score=29.89 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 561 QTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 561 Q~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
+.++..|..+....+.-.+.+..+..+
T Consensus 369 e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 369 QQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 338
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.83 E-value=2.1e+02 Score=27.52 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (686)
Q Consensus 401 ~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~ 471 (686)
++|.++..-..-|+++..|++.||.++ .-..+--.+|-..|.|||..+++-+..+..
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~--------------r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGER--------------RGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555777777777777776 122223456788899999988766666543
No 339
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.76 E-value=6.4e+02 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 568 ASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 568 ~sEk~aL~~qLErl~~~~~~e 588 (686)
..+..+.+.-++.+..++++.
T Consensus 379 ~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 379 EREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666665553
No 340
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.67 E-value=1.7e+02 Score=25.16 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (686)
Q Consensus 267 l~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~e 304 (686)
|..|-.+|-..|.+|+.-...|..+.+++....+.+.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666555555555555544333333
No 341
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.99 E-value=86 Score=29.81 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=35.8
Q ss_pred hHHHHHHhhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q 005641 628 SVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICTSLLDVF 677 (686)
Q Consensus 628 ~~rvk~a~s~lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlwV~~vL~ty 677 (686)
+..+...++.|.+.+.++-+-+| +.-.++.+++-+|++-++++++++.|
T Consensus 66 ad~L~~~as~F~~~A~klkrk~w-Wkn~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 66 ADQLQAGASQFEKTAVKLKRKMW-WKNCKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777888888888888887 77777777777776666666666654
No 342
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.87 E-value=6.7e+02 Score=28.70 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=12.9
Q ss_pred ccccCCCccccccccccccCCCCccccc
Q 005641 179 GIVNEDRIDDAGQITKSADADAPLKIDS 206 (686)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (686)
.....|+|+...-..+.+++......+.
T Consensus 187 ~~g~~d~~v~l~~~~~~~~~e~~~~~l~ 214 (455)
T KOG3850|consen 187 KFGSADNIVHLKAVLENFGPERNARALP 214 (455)
T ss_pred CcccCCCcccccccccccchhhhhccCC
Confidence 3344455555544444444444333333
No 343
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.70 E-value=3e+02 Score=24.54 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVAERELSRSYE 310 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~el~ek~~~Le 310 (686)
|......+......++..+..+.+.+..++
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~ 34 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVE 34 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 344
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.53 E-value=2.8e+02 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005641 510 AENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~lk 532 (686)
++..|.+.+.+|..|+.+-+.+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 44556667777777777666633
No 345
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.39 E-value=47 Score=33.35 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 434 LARIQRIADERTAKAGELEQK 454 (686)
Q Consensus 434 L~~lQrkL~Ee~~ea~eLeeQ 454 (686)
|..++.++++..-+-+-|+..
T Consensus 2 LeD~EsklN~AIERnalLE~E 22 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE 22 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 445555555554444444443
No 346
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=36.93 E-value=5.5e+02 Score=27.43 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005641 458 LEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 458 LE~El~qlKQELq~le~el~r 478 (686)
.+.++.+++..+...+..+.+
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444433
No 347
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.93 E-value=5e+02 Score=26.95 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEV 500 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL 500 (686)
.+||..-......+...+..+.........+......+-..+...++.++.+...+......... . +
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~--~-----------l 147 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGES--P-----------L 147 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--h-----------h
Confidence 34444444445556666666666666666666666667777777777777777766664311100 0 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 501 ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (686)
Q Consensus 501 ~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~ 575 (686)
...+ ...+..++.-+..++..++.++.. ...+...|..|...++-.+-.-+..+..|..-.|..+
T Consensus 148 ~~a~--~~~l~ae~~~l~~~~~~le~el~s--------~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 148 SEAQ--RWLLQAELAALEAQIEMLEQELLS--------NNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred hHHH--HHHHHHHHHHHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 112344444555555555555544 2334456666665555555544555555555444443
No 348
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.85 E-value=1.1e+03 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 552 ELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 552 ~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
.|.+.|..+..-++.|...-+.+-.++-.++
T Consensus 380 ~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~ 410 (1109)
T PRK10929 380 ILDAQLRTQRELLNSLLSGGDTLILELTKLK 410 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444
No 349
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=36.80 E-value=7.1e+02 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel 359 (686)
.++.+|..|-.-..--+..+...+....+++..++..-..++.++
T Consensus 143 ~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl 187 (421)
T KOG2685|consen 143 EVETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDL 187 (421)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Confidence 555555555555555555555555555555555555444444433
No 350
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=36.66 E-value=5.3e+02 Score=31.16 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
++....++..+.++||..+.+.+.....|+... +.|.+-+.+|.-.|-+|
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~----~~l~~~r~dW~laEae~ 425 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQY----QDLSRNRDDWMIAEVEQ 425 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcChhhhHHHHHHH
Confidence 444445555555555554444444333333333 23344456666666554
No 351
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.52 E-value=2.8e+02 Score=33.13 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
+-..+.+|+..+.+||..|++|..++..-+++++.+..
T Consensus 112 ~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 112 INTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33456677788889999999999999988888887664
No 352
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=36.34 E-value=6.8e+02 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 495 ~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk 532 (686)
.|.-|...||..+...+..-+-++.++..|+.-+..++
T Consensus 249 EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 249 EFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555555444444444444444444444444433
No 353
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.17 E-value=91 Score=25.66 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 005641 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (686)
Q Consensus 311 ~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~ 354 (686)
.++..|+..|..++..+....+....+|..+..++..|.+.|.-
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788878777777777777777777777777766653
No 354
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.08 E-value=4.4e+02 Score=26.04 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 369 LQMNMESIMRNRELT 383 (686)
Q Consensus 369 lqaE~~~L~qel~~~ 383 (686)
++.++..+...++..
T Consensus 47 Lkien~~l~~kIeER 61 (177)
T PF13870_consen 47 LKIENQQLNEKIEER 61 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 355
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=35.99 E-value=8.8e+02 Score=29.53 Aligned_cols=24 Identities=38% Similarity=0.247 Sum_probs=10.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 005641 277 VCAGLSSRLQEYKSENAQLEELLV 300 (686)
Q Consensus 277 ~~~RLrk~~qel~~~~aqLEe~~~ 300 (686)
...=|.++..+++.+....|..+.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~ 291 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLN 291 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 356
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.98 E-value=5.4e+02 Score=27.06 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARI 313 (686)
Q Consensus 253 lee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l 313 (686)
++.....|-.+++.|..|......-..++.........+...|+..+..+...+..+-...
T Consensus 50 ~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 50 LEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333555666666666666666666666666666666666666666655555555444443
No 357
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.74 E-value=2.8e+02 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
|-.....++.++...+..++.....+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444455555555444444444443
No 358
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.65 E-value=4e+02 Score=25.50 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 491 IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (686)
Q Consensus 491 ~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sE 570 (686)
.+..+|+.++..+-..+..++..|++.+.-+.+| +.+-.|..-|-..-+..++.-...++++|.+ .+|.|.-.
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~El----e~l~eD~~vYk~VG~llvk~~k~~~~~eL~e---r~E~Le~r 85 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEEL----EKLDEDAPVYKKVGNLLVKVSKEEAVDELEE---RKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcccHHHHHhhhHHhhhhHHHHHHHHHH---HHHHHHHH
Confidence 3444455555544444444444444433322222 2222333222223335555544555555544 37777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 571 KAAAEFQLEKEMNRLQEVQSEA 592 (686)
Q Consensus 571 k~aL~~qLErl~~~~~~e~~~~ 592 (686)
..+|..|-+++..+++.-++.+
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 359
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.22 E-value=1.6e+02 Score=27.51 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~ 589 (686)
..++.++..|.+++.+=..++..|..|.+.|+.+.+.+..++....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777888889999999999999888776643
No 360
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.05 E-value=3.1e+02 Score=23.99 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 335 AEALAAKNSEIETLVSSIDALKKQAALS-EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (686)
Q Consensus 335 ~~qL~ake~ei~~Le~rL~~l~qel~~~-k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~l 402 (686)
..++..+..++=.|.-+|.-+++.+... ......+..++-.|+-++..+.+. ++.+...|..+..++
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e-l~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE-LQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4455666778888888888888888743 455555556666666666666663 666666666666554
No 361
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=34.70 E-value=13 Score=43.10 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhH
Q 005641 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366 (686)
Q Consensus 320 L~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~l 366 (686)
|..-|.-+..-|+.++.+..-++.+++.+-.||-..++++.......
T Consensus 410 l~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m 456 (495)
T PF12004_consen 410 LLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEM 456 (495)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 34444444555555555555667777888888877777766655433
No 362
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.60 E-value=3.2e+02 Score=24.67 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 508 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (686)
Q Consensus 508 ~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL 574 (686)
+.+..++..+.++...+..++...... ......|..+...+.+++..-..++..+..+.+.+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~-----~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKA-----GEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHT-----TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555554442220 01234566666666555555555555555544443
No 363
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.58 E-value=6.6e+02 Score=27.67 Aligned_cols=88 Identities=13% Similarity=0.228 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-----h-----hhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-----R-----EEHMELEKRYRELTDLLYYKQTQLE 565 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~s-----s-----~~~~eLE~qlr~Lte~LieKQ~qlE 565 (686)
|...+..++..+......|.+++.++..|+.++......+..+. . ....+.-..+..++..|...+.+++
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666654332221111 0 0124566777888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005641 566 TMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 566 ~L~sEk~aL~~qLErl~~ 583 (686)
...+-.+..+..|.-+..
T Consensus 152 q~~~k~~~~q~~l~~~~~ 169 (301)
T PF06120_consen 152 QMQSKASETQATLNDLTE 169 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766666666655443
No 364
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=34.53 E-value=7.4e+02 Score=28.19 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=12.0
Q ss_pred CCccchhhhhhhcccccccc
Q 005641 87 KDTATLAVEKETITTGKTQK 106 (686)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (686)
.+...+..|.+.|.|..+.+
T Consensus 77 ~~~~~~~~q~~il~S~~vl~ 96 (458)
T COG3206 77 NDSSSLETEIEILQSRSVLE 96 (458)
T ss_pred CCchhHHHHHHHHhhHHHHH
Confidence 34455566666666666664
No 365
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=34.52 E-value=4.4e+02 Score=25.61 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----------hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 511 ENKLSSLEAEVQKMRVEMAAMKRD----------AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~lk~d----------leq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLEr 580 (686)
-+-...|++++--|+..++.++.. ++.++. ..|..-|++| ..||.+|.-||--
T Consensus 14 ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~---~~l~~llkqL--------------EkeK~~Le~qlk~ 76 (129)
T PF15372_consen 14 LELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV---ESLNQLLKQL--------------EKEKRSLENQLKD 76 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH---HHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 334556777777777777776621 122222 3444444444 8899999999998
Q ss_pred HHHHHHHHHHHH
Q 005641 581 EMNRLQEVQSEA 592 (686)
Q Consensus 581 l~~~~~~e~~~~ 592 (686)
..-+++.+...|
T Consensus 77 ~e~rLeQEsKAy 88 (129)
T PF15372_consen 77 YEWRLEQESKAY 88 (129)
T ss_pred HHHHHHHHHHHH
Confidence 888888877655
No 366
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.03 E-value=5e+02 Score=31.02 Aligned_cols=125 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005641 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (686)
Q Consensus 270 ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le 349 (686)
|+.||+++.- +++--..+.+...-|++-..+..++-..|..++..|-+-.-...-++...|.+|.+.+--...+...|.
T Consensus 597 k~~QlQ~l~~-~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~ 675 (741)
T KOG4460|consen 597 KKKQLQDLSY-CREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLG 675 (741)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHH
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (686)
Q Consensus 350 ~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eL 395 (686)
..|.++....+..+.....+++....=+..+.+.+-+-+++.=.+|
T Consensus 676 ~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L 721 (741)
T KOG4460|consen 676 NAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKEL 721 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH
No 367
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.95 E-value=3.3e+02 Score=23.98 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
+...+..++..+...+..+..++..+
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444333
No 368
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.71 E-value=2.2e+02 Score=30.35 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 329 q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
+..-++..+|..++.++..|++.++.++-++...+.+-..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555554444444333
No 369
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=4.4e+02 Score=25.28 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 431 seAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
..++.++...++-...++..|+.|...++-.++.++.+|..+-
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566665555556677777777777777766666665543
No 370
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.17 E-value=8.7e+02 Score=28.61 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEELLVA---ERELSRSYEARIKQLEQELSVYKSEVTKVESN----------LAEALAAKNSEIET 347 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe~~~e---l~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~ese----------l~~qL~ake~ei~~ 347 (686)
+-+....++.++.-|++++.+ +.++...|+++.+.|+.++-..+...+.++.- +......++++|+.
T Consensus 269 i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~ 348 (622)
T COG5185 269 INTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKA 348 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555543 23344455566666666666666555555443 33445566777888
Q ss_pred HHHhHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q 005641 348 LVSSIDALKKQAALSE---GNLASLQMNMESIMRNREL 382 (686)
Q Consensus 348 Le~rL~~l~qel~~~k---~~ls~lqaE~~~L~qel~~ 382 (686)
|+..+++|..++.... +..+.+-+|...|.++|.-
T Consensus 349 L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 349 LQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDK 386 (622)
T ss_pred HHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777766543 4455555677888877765
No 371
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=32.68 E-value=61 Score=26.13 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH--HhccccCCCC
Q 005641 657 IILLFYLKSFAGICTS--LLDVFVAPSS 682 (686)
Q Consensus 657 l~~l~Y~vlLHlwV~~--vL~ty~~p~~ 682 (686)
++++++|+..-+|.++ ||+..++|++
T Consensus 17 IC~Fl~~~~~F~~F~~Kqilfr~~~~sn 44 (54)
T PF06716_consen 17 ICLFLFCLVVFIWFVYKQILFRNNPQSN 44 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 4555555555566554 5566455554
No 372
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.91 E-value=1.4e+02 Score=33.43 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 005641 375 SIMRNRELTETR 386 (686)
Q Consensus 375 ~L~qel~~~ekR 386 (686)
.+.+.+...+++
T Consensus 162 ~i~~~~~~~~k~ 173 (370)
T PF02994_consen 162 EIEQAIKELEKR 173 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 333333344443
No 373
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.85 E-value=2e+02 Score=27.15 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
..++.++..+..++.+=..++..|..|.+.|+.+-+.+..++...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888999999999999888877763
No 374
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.73 E-value=1.6e+02 Score=34.20 Aligned_cols=15 Identities=0% Similarity=0.158 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 303 RELSRSYEARIKQLE 317 (686)
Q Consensus 303 ~ek~~~Le~~l~~LQ 317 (686)
+.+...|+.++..+.
T Consensus 75 Q~kasELEKqLaaLr 89 (475)
T PRK13729 75 QVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 375
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.63 E-value=3.7e+02 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 005641 517 LEAEVQKMRVEMAA 530 (686)
Q Consensus 517 le~El~~Lr~qle~ 530 (686)
.+.||..|+.+|+.
T Consensus 62 YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 62 YEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666666554
No 376
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=31.62 E-value=49 Score=34.05 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=26.7
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHHHhc
Q 005641 647 RFLWRYPIARIILLFYLKSFAGICTSLLD 675 (686)
Q Consensus 647 ~fLRR~P~aRl~~l~Y~vlLHlwV~~vL~ 675 (686)
-|++.|+.+=+++++.++.+|+|-|++++
T Consensus 163 Tf~kqnr~~l~~~~l~~l~~~~w~l~v~~ 191 (196)
T PF06770_consen 163 TFFKQNRFTLIMFVLLILVLNCWNLYVLY 191 (196)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999986
No 377
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=31.58 E-value=1.3e+03 Score=30.05 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 449 GELEQKVAMLEVECATLQQ 467 (686)
Q Consensus 449 ~eLeeQis~LE~El~qlKQ 467 (686)
.+|+.|+..+.+++++++.
T Consensus 1066 ~eLReQIq~~KQ~LesLQR 1084 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQR 1084 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777666666653
No 378
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.56 E-value=3.8e+02 Score=28.19 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=4.8
Q ss_pred HHHHHHhhhHHHH
Q 005641 357 KQAALSEGNLASL 369 (686)
Q Consensus 357 qel~~~k~~ls~l 369 (686)
.++++..+..+++
T Consensus 193 ~EydrLlee~~~L 205 (216)
T KOG1962|consen 193 DEYDRLLEEYSKL 205 (216)
T ss_pred cHHHHHHHHHHHH
Confidence 3333333333333
No 379
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.20 E-value=1.1e+03 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=12.1
Q ss_pred ccccccccCccccccccccccccc
Q 005641 125 EQSKDMSKHDADRVEIPETFTDLD 148 (686)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (686)
.|...+.++......+....+.+|
T Consensus 253 ~l~~~i~~~~~~l~~~~~~l~~lD 276 (782)
T PRK00409 253 ELSAKVAKNLDFLKFLNKIFDELD 276 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444445454
No 380
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=30.79 E-value=1.1e+02 Score=25.68 Aligned_cols=47 Identities=19% Similarity=0.038 Sum_probs=34.5
Q ss_pred hhhhHHHHHHhhhhhhhHHHHH-HHhhhchhHHHHHHHHHHHHHHHHH
Q 005641 625 AGASVQLQKAAKLLDSGAVRAT-RFLWRYPIARIILLFYLKSFAGICT 671 (686)
Q Consensus 625 ~~~~~rvk~a~s~lDs~~ir~g-~fLRR~P~aRl~~l~Y~vlLHlwV~ 671 (686)
+++.++.|-.+-..=.+++-+. -|+..+|.+|+++++.+++...|++
T Consensus 22 r~i~~k~K~~a~~~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 22 RGIPRKAKIRALLMMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 3466677666666666666666 6677777999999999888777765
No 381
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.66 E-value=6.1e+02 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQL 564 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~ql 564 (686)
...++|=.+|.-+|.+||..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ 173 (189)
T TIGR02132 153 KQIKTQGEQLQAQLLEKQEAL 173 (189)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 344555556666677776443
No 382
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.28 E-value=2.8e+02 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.118 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
..++..+..|.++|..+ ..|..+|+.|.+.+..
T Consensus 157 ~~~~~ei~~lk~el~~~-------~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKK-------EKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 44445555555555444 5555555556655544
No 383
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.20 E-value=6.2e+02 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe 392 (686)
+--+.+++..|..+.+.+.........++.....+...+..++.+....|.
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555554444455555555666666666666555544
No 384
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=30.06 E-value=7.5e+02 Score=26.89 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhh-hhccchHHHHHHHHHHhhhhHHHHHHHH
Q 005641 251 DQLDEAQGLLKTT-ISTGQSKEARLARVCAGLSSRLQEYKSE 291 (686)
Q Consensus 251 kQlee~~~~LrsE-~eal~~ke~qLav~~~RLrk~~qel~~~ 291 (686)
+++++.+.+|.-. .+++..-++||.-+..|++--.+|+..-
T Consensus 30 k~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qw 71 (268)
T PF11802_consen 30 KDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQW 71 (268)
T ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4666777777444 4777777888888888888766666543
No 385
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.83 E-value=9.3e+02 Score=27.89 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARI----KQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 280 RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l----~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
+|++...++....+.||+-++..++-|+.....+ ..-+..|...|....+.+++...++
T Consensus 303 qlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qm 365 (542)
T KOG0993|consen 303 QLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQM 365 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888887777777665444322 2223334444444555555543333
No 386
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.62 E-value=1.8e+02 Score=27.39 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
..|+.+|..+-.++-.=-+.+.+|..|.++|+++.+.+..++-.
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 56777777777777777778888899999999999998876554
No 387
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=29.58 E-value=6.8e+02 Score=28.92 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 348 Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
....+..++.+-..++...+-++.-.+.|++.+.+
T Consensus 179 Vt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqd 213 (558)
T PF15358_consen 179 VTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQD 213 (558)
T ss_pred HhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcc
Confidence 33344444444444455555555555666666665
No 388
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.51 E-value=4e+02 Score=28.39 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (686)
Q Consensus 287 el~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~e 319 (686)
+++++...++..+.++++....||+-+..++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555555555555543
No 389
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.08 E-value=2.7e+02 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~e 319 (686)
.+|-.+.+-+|..+.+|.+.+...+..+..|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333333333333333
No 390
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=29.06 E-value=7.3e+02 Score=29.86 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005641 323 YKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (686)
Q Consensus 323 eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ 383 (686)
.+..++-..+++..+..-+..+...|++.+.+.++--..+.+++.+++.|.+.++.++.+.
T Consensus 316 tKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 316 TKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred hhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667776666666777788888777766655555677777777777777776664
No 391
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.03 E-value=1.8e+02 Score=31.25 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhh-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREE-HMELEKRYRELTDLLYYKQ-TQLETMASEKAA 573 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~-~~eLE~qlr~Lte~LieKQ-~qlE~L~sEk~a 573 (686)
.+..+..||+....+...+..++++|..-+.+|+.+.......+..+ +..-.......++++|+|- ..|..|..++..
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777888888888888888888888653221111100 0011112233677777775 445555555443
No 392
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.91 E-value=4.6e+02 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 506 GQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 506 ~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
....++..+..++..+..|+.++..
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555544
No 393
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.76 E-value=1.8e+02 Score=28.07 Aligned_cols=44 Identities=30% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q 329 (686)
+||+.+.+.||-..+.+.-....|..++..|+-+|.+++.-+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666777777666666666666777777777777776665544
No 394
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.37 E-value=1e+03 Score=28.01 Aligned_cols=40 Identities=18% Similarity=0.034 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 005641 630 QLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLKSFAGICT 671 (686)
Q Consensus 630 rvk~a~s~lDs~~ir~g~fLRR~P~aRl~~l~Y~vlLHlwV~ 671 (686)
+|.++-=.+|.+...+- =.||.+-..+|+||=+..||-+-
T Consensus 559 ~vqs~~i~ld~~~~~~n--~~r~~i~k~V~~v~~~~~~fk~~ 598 (622)
T COG5185 559 LVQSTEIKLDELKVDLN--RKRYKIHKQVIHVIDITSKFKIN 598 (622)
T ss_pred HHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444445677665443 35799999999999999887653
No 395
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=28.31 E-value=61 Score=28.79 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 005641 652 YPIARIILLFYLKSFAGICTSL 673 (686)
Q Consensus 652 ~P~aRl~~l~Y~vlLHlwV~~v 673 (686)
+..+|++.+.|+..+|+|.++.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~ 42 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLF 42 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 4568999999999999998764
No 396
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.88 E-value=2.5e+02 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~ 327 (686)
+.+..++..|+..+..++.++..|+..+..|...+...+..|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444444444444444444433333
No 397
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.74 E-value=7e+02 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEELLVAERELSRSYEARIK 314 (686)
Q Consensus 285 ~qel~~~~aqLEe~~~el~ek~~~Le~~l~ 314 (686)
-..|..+++.+|.++.+-+++...|+.-+.
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~ 136 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQ 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788776666666666655544
No 398
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.45 E-value=9e+02 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 432 eAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
..+........+++.+++.+.-|++-|-.|..-++.||..+.
T Consensus 12 ~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~ 53 (355)
T PF09766_consen 12 FRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCL 53 (355)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334455666777777888888888888777777777776554
No 399
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.39 E-value=7.1e+02 Score=25.80 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQEL 320 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL 320 (686)
+...|+..+...-..+
T Consensus 39 ~~~~~~~~i~~aP~~~ 54 (240)
T PF12795_consen 39 RAAEYQKQIDQAPKEI 54 (240)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3333443333333333
No 400
>PF14282 FlxA: FlxA-like protein
Probab=27.16 E-value=4.3e+02 Score=24.35 Aligned_cols=54 Identities=11% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 512 ekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
..+..|+.++..|+.+|..+..+-. . .-.+|+.+++.|...+..|..||-.+..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~-~-----------------~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSD-L-----------------DAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-C-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666667777766666443200 0 1123445555556666666666665554
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.13 E-value=1.2e+03 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=10.7
Q ss_pred ccccccccCccccccccccccccc
Q 005641 125 EQSKDMSKHDADRVEIPETFTDLD 148 (686)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (686)
.|...+.++......+....+.+|
T Consensus 248 ~L~~~i~~~~~~l~~~~~~l~~lD 271 (771)
T TIGR01069 248 TLSEKVQEYLLELKFLFKEFDFLD 271 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444444444444
No 402
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.12 E-value=3.3e+02 Score=30.54 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L 376 (686)
+..+.+.-=..+..+|+.+++.++++..-...+...++.|+..+..++...+.++.+..+.+...+.+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
No 403
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.97 E-value=6.8e+02 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=28.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe 392 (686)
+..|.+++..|..+.+.+.........++.....+...+..++.++...|.
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555666666666666666555544
No 404
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.55 E-value=72 Score=35.03 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=26.9
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHhccc
Q 005641 644 RATRFLWRYPIARIILLFYLKSFAGICTSLLDVF 677 (686)
Q Consensus 644 r~g~fLRR~P~aRl~~l~Y~vlLHlwV~~vL~ty 677 (686)
.++...|.+...|.|.+|++|||-|.++|+...|
T Consensus 282 ~irka~~~~~~~r~~~lf~llvlsf~lLFldwy~ 315 (316)
T KOG3894|consen 282 EIRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWYY 315 (316)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcC
Confidence 4455677888889999999999988888876554
No 405
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.52 E-value=4.2e+02 Score=22.82 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=11.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 360 ALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 360 ~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
..+......+..|...|.+..+..-+|
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 406
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.01 E-value=55 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 540 REEHMELEKRYRELTDLLYYKQTQLETMASE 570 (686)
Q Consensus 540 s~~~~eLE~qlr~Lte~LieKQ~qlE~L~sE 570 (686)
++....+|.+..+..+.|-+|-+.|-+|.-+
T Consensus 24 s~~~~~le~ENee~~e~L~~kV~aLKsLs~d 54 (118)
T KOG3385|consen 24 SSHLASLERENEEAAESLQQKVKALKSLSLD 54 (118)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777777777776666666543
No 407
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.90 E-value=6.4e+02 Score=24.74 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl 581 (686)
.-|++++..|......=+..|+.+..+...+...|+.-
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555566666666666666555543
No 408
>PRK00106 hypothetical protein; Provisional
Probab=25.74 E-value=1.2e+03 Score=27.79 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005641 315 QLEQEL 320 (686)
Q Consensus 315 ~LQ~eL 320 (686)
+++.++
T Consensus 87 ElEkel 92 (535)
T PRK00106 87 EIEQEF 92 (535)
T ss_pred HHHHHH
Confidence 333333
No 409
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=25.69 E-value=6.4e+02 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qL 578 (686)
++.|.+.-...+..+-.++ ..++..+.+++
T Consensus 341 q~l~~~t~~~~~~~~en~l---~aek~~~~~~~ 370 (405)
T KOG2010|consen 341 QVLRYKTAAENAEKVEDEL---KAEKRKLQREL 370 (405)
T ss_pred HHHHHHHHHHHHHHhhhHH---hhhhhhhhhHH
Confidence 4555555555555554433 34444444433
No 410
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=25.54 E-value=4.9e+02 Score=28.55 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 005641 458 LEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 458 LE~El~qlKQELq~le~el~r~ 479 (686)
++..+.+.+.+++.++.++.|.
T Consensus 111 ~~~~l~~a~~~l~~a~~~~~r~ 132 (370)
T PRK11578 111 LRAQRQQAEAELKLARVTLSRQ 132 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.45 E-value=1.4e+03 Score=28.41 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.7
Q ss_pred Hhhhch
Q 005641 648 FLWRYP 653 (686)
Q Consensus 648 fLRR~P 653 (686)
||+++|
T Consensus 743 ~L~~~~ 748 (771)
T TIGR01069 743 LLKNHP 748 (771)
T ss_pred HhcCCc
Confidence 444444
No 412
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.44 E-value=4e+02 Score=25.99 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhh
Q 005641 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL 281 (686)
Q Consensus 248 ~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RL 281 (686)
.+...++.++..+++....+.++++||.++....
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555666666666666666666666666665544
No 413
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=2.7e+02 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 005641 655 ARIILLFYLKSFAGICTSLLDVF 677 (686)
Q Consensus 655 aRl~~l~Y~vlLHlwV~~vL~ty 677 (686)
.++-.+|||++.-+.+|||+..|
T Consensus 94 sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 94 SGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred CCcchHHHHHHHHHHHHHHhhee
Confidence 45566788887777777776654
No 414
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=25.34 E-value=1e+03 Score=26.80 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHH
Q 005641 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE-LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQR 508 (686)
Q Consensus 430 LseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQE-Lq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~ 508 (686)
+..++.+++..+......+..++.++..+...+.+.+.. +.....++.|+. .|-...-
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~---------------------~L~~~g~ 147 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRA---------------------ELAQRGV 147 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhcCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLEr 580 (686)
-..+++......+..-+..+.. .. ...+..+..|......++.++..+...+..-.+.|++
T Consensus 148 vs~~~~~~a~~a~~~A~A~~~~---------a~--~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 148 VSREELDRARAALQAAEAALAA---------AQ--AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH---------hH--HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhC
No 415
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.34 E-value=4.1e+02 Score=22.30 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~ 377 (686)
.++++.|..++..+..++..++..+..++.|..++-
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333333333
No 416
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=25.22 E-value=8.1e+02 Score=27.37 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 005641 324 KSEVTKVESNL 334 (686)
Q Consensus 324 Q~~~~q~esel 334 (686)
+..|.-.|-+|
T Consensus 124 ~~dW~LaEaey 134 (372)
T PF04375_consen 124 RDDWLLAEAEY 134 (372)
T ss_pred hHhHHHHHHHH
Confidence 44555555444
No 417
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.13 E-value=1.1e+02 Score=28.31 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~ese 333 (686)
+.+..+..++..+.+++.+|..+-..+...-+.
T Consensus 5 ~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~ 37 (100)
T PF06428_consen 5 EERERREEAEQEKEQIESELEELTASLFEEANK 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444444333
No 418
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.09 E-value=6.6e+02 Score=24.58 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 449 ~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
.+|.+++.-|..++.+++.|+..++.+++++.
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777777777777765
No 419
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.02 E-value=4.1e+02 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~e 319 (686)
.+|-.+.+-.|..+.+|.+.+...+..+..|+..
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444433333333333333333333333
No 420
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.93 E-value=6.7e+02 Score=25.20 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 005641 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (686)
Q Consensus 304 ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~ 354 (686)
+.+..+-..|......+..-..++......+..-|..-...|..|+..|..
T Consensus 124 ~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 124 DKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHH
Confidence 333444444444444444444444444454444444444444444444443
No 421
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.75 E-value=3.4e+02 Score=24.55 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005641 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK 523 (686)
Q Consensus 453 eQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~ 523 (686)
.+|.-++..+.+++..|+.++.+++... ..-.+-+.|..|+..+.......+.+|+.+..+-.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~e-------Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRE-------LSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccC-------CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
No 422
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=6.9e+02 Score=27.49 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 294 qLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
++|..-+.|.+....+...+..|+.++.+.+..+...++++..+|
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L 163 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRAL 163 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666667777777777666666666665554444
No 423
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.64 E-value=8e+02 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 493 lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
.+..+.|...|+.....+...|..+..+|..|+.+.+.
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566777777777777777777788888877776654
No 424
>PRK02119 hypothetical protein; Provisional
Probab=24.40 E-value=4.5e+02 Score=22.80 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~ 318 (686)
.+|-.+.+-.|..+.+|.+.+..-+..+..|+.
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333333333333333
No 425
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.38 E-value=3.6e+02 Score=27.95 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=10.5
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEE 297 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe 297 (686)
.+||++.+++|-......+.
T Consensus 98 evrLkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554443
No 426
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.31 E-value=4.8e+02 Score=26.54 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~ese 333 (686)
++|++|+....-+.+.-+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~ 120 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ 120 (171)
T ss_dssp --------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445554444444444433
No 427
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=24.26 E-value=7.3e+02 Score=24.83 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
..+..+|+..+++++-....-.+-+.|+.....-.+.+.+
T Consensus 87 ~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk 126 (159)
T PF04949_consen 87 EMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK 126 (159)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566655555555554444444444444444444444
No 428
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.18 E-value=1.2e+03 Score=27.13 Aligned_cols=13 Identities=15% Similarity=0.665 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhh
Q 005641 494 QAWQDEVERARQG 506 (686)
Q Consensus 494 k~Lq~EL~~lR~~ 506 (686)
+-|+.||...=+.
T Consensus 282 KiWE~EL~~VcEE 294 (426)
T smart00806 282 KIWEAELDKVCEE 294 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 5577777755443
No 429
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.11 E-value=4.9e+02 Score=29.70 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAM 531 (686)
Q Consensus 503 lR~~~~~lEekL~~le~El~~Lr~qle~l 531 (686)
++.....+..++..++.++..|+.+++..
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445556666666677777666664
No 430
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.10 E-value=4.7e+02 Score=26.77 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
+.|-+.|..++.+++......+.+.+|.+.|.-.|+.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4444444444444444455555555555555544444
No 431
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.88 E-value=6.5e+02 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLLYYKQTQLETM 567 (686)
Q Consensus 546 LE~qlr~Lte~LieKQ~qlE~L 567 (686)
.+.|+.-|-..|..|+..|+.|
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433
No 432
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.82 E-value=5.3e+02 Score=29.33 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
.+-.+..+.+++..++...|..++....++
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666554
No 433
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.70 E-value=5.5e+02 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 501 ERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 501 ~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
..++.....+..++..|++++.+|..++..
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443
No 434
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.66 E-value=8e+02 Score=25.09 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.5
Q ss_pred hcCCCCchhh
Q 005641 241 KADDPPTKEQ 250 (686)
Q Consensus 241 ~~~ek~~~lq 250 (686)
+.++-+..+.
T Consensus 63 ~idd~~~~f~ 72 (190)
T PF05266_consen 63 QIDDSRSSFE 72 (190)
T ss_pred ccCCcHHHHH
Confidence 3444444444
No 435
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.46 E-value=2.9e+02 Score=32.23 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005641 388 IQALREELASVERR 401 (686)
Q Consensus 388 lqsLe~eLkslq~~ 401 (686)
+..|+.+++.|+..
T Consensus 106 IkeLEaE~~~Lk~Q 119 (475)
T PRK13729 106 IEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 436
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=23.46 E-value=5.8e+02 Score=23.58 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 005641 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA-EALAAKNSEIETLVSSIDALKKQAALSE 363 (686)
Q Consensus 285 ~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~-~qL~ake~ei~~Le~rL~~l~qel~~~k 363 (686)
..+|+-+.+=.|+....++-++..|+..-+.|..+|.+.+..+-...+... .....-...-..|+..|..+..++..+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 345666666667766677777777777777777777776654432221000 0000001111234445555555555555
Q ss_pred hhHHHHHHHHH
Q 005641 364 GNLASLQMNME 374 (686)
Q Consensus 364 ~~ls~lqaE~~ 374 (686)
.++-+++-||+
T Consensus 83 ~kv~eLq~ENR 93 (96)
T PF11365_consen 83 GKVMELQYENR 93 (96)
T ss_pred hHHHHHhhccc
Confidence 55555555543
No 437
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.44 E-value=1.6e+02 Score=27.20 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 341 KNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (686)
Q Consensus 341 ke~ei~~Le~rL-~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~ 400 (686)
++.++.+|..+| +.++.-+...+..-..++..+..|...+.+... ++.++...|+.|+.
T Consensus 20 ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 20 IESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-LLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-CCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 366667777777 666666665555555555556666666666555 35555544444443
No 438
>PRK00295 hypothetical protein; Provisional
Probab=23.44 E-value=4.7e+02 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (686)
Q Consensus 285 ~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL 320 (686)
..+|-.+.+-.|..+.+|.+.+...+..+..|+..|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333333
No 439
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.39 E-value=1e+03 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 551 RELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (686)
Q Consensus 551 r~Lte~LieKQ~qlE~L~sEk~aL~~qLEr 580 (686)
....+.|.+++..+..+......|..+++.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333
No 440
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.38 E-value=5.3e+02 Score=22.89 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ-TQLETMASEKAAA 574 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ-~qlE~L~sEk~aL 574 (686)
|..-+..++......+..+..++..+..+..+....+.++...|..-..-|+.+=..|...|..-. .....|...+..+
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l 84 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESL 84 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555554444433443222333333333333332221 3333344444444
Q ss_pred HHHHHHHHH
Q 005641 575 EFQLEKEMN 583 (686)
Q Consensus 575 ~~qLErl~~ 583 (686)
...+..+..
T Consensus 85 ~~~l~~l~~ 93 (127)
T smart00502 85 TQKQEKLSH 93 (127)
T ss_pred HHHHHHHHH
Confidence 444444433
No 441
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=23.37 E-value=2.1e+02 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=15.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005641 555 DLLYYKQT-QLETMASEKAAAEFQLEK 580 (686)
Q Consensus 555 e~LieKQ~-qlE~L~sEk~aL~~qLEr 580 (686)
+.+...+. .=|.|..|--.|..+|-.
T Consensus 155 e~~l~~~~~~QE~L~~em~~La~~LK~ 181 (251)
T PF09753_consen 155 EKILQHHRNLQEDLTEEMLSLARQLKE 181 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344443 334677777777777755
No 442
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.16 E-value=2.1e+02 Score=23.54 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005641 395 LASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (686)
Q Consensus 395 Lkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~l 437 (686)
|..+...+--|...+.-.+..+-.++.+|+.+|..|-+-|..+
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666656666666667777788888888886666554443
No 443
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.99 E-value=2.3e+02 Score=22.49 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005641 514 LSSLEAEVQKMRVEMA 529 (686)
Q Consensus 514 L~~le~El~~Lr~qle 529 (686)
...+..+...|+.++.
T Consensus 21 ~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 21 YDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 444
>PLN02678 seryl-tRNA synthetase
Probab=22.95 E-value=5.4e+02 Score=29.80 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
-.|...+..++.++...+..+++....+
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666555555555554
No 445
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.79 E-value=5.6e+02 Score=23.02 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~ 381 (686)
+.+++.|......|.+++.....+...++.-+.-+...|.
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333333333
No 446
>PLN02678 seryl-tRNA synthetase
Probab=22.75 E-value=5.8e+02 Score=29.53 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=14.7
Q ss_pred hHHHHHHhhhhhhh---HHHHHHHh-hhchhHHH
Q 005641 628 SVQLQKAAKLLDSG---AVRATRFL-WRYPIARI 657 (686)
Q Consensus 628 ~~rvk~a~s~lDs~---~ir~g~fL-RR~P~aRl 657 (686)
...+...+..+|-- -+..++|. +....+||
T Consensus 143 H~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L 176 (448)
T PLN02678 143 HVDLVELLGIVDTERGADVAGGRGYYLKGAGVLL 176 (448)
T ss_pred HHHHHhhccCccchhhhhhcCceeEEECCHHHHH
Confidence 34566667776532 23445544 33444444
No 447
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.75 E-value=9.7e+02 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 005641 436 RIQRIADERTAKAGELEQKVAML-EVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 436 ~lQrkL~Ee~~ea~eLeeQis~L-E~El~qlKQELq~le~el~r~q 480 (686)
.+++.|+....+++.|..|+..+ +.+..=+.+.|+.++-+.+|.|
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQ 206 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777777776654 4556666677776666666654
No 448
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.67 E-value=6.9e+02 Score=23.96 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEELLVAERELSRSYEARIK 314 (686)
Q Consensus 283 k~~qel~~~~aqLEe~~~el~ek~~~Le~~l~ 314 (686)
.+..++-..+.||-+....+.+.++.|+++++
T Consensus 35 qrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 35 QRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888889988888888898888888877
No 449
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.64 E-value=8.2e+02 Score=24.84 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 005641 390 ALREELASVERRAE 403 (686)
Q Consensus 390 sLe~eLkslq~~lE 403 (686)
.++..+..++..++
T Consensus 80 ~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 80 ELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 450
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.59 E-value=7.2e+02 Score=24.14 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 005641 511 ENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~lk 532 (686)
...|..+...+..|..++.+++
T Consensus 59 r~~l~~l~~~l~~l~~eL~~Lr 80 (126)
T PF07028_consen 59 RSELKELKQELDVLSKELQALR 80 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 451
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=22.44 E-value=2.1e+02 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 315 QLEQELSVYKSEVTKVESNLA 335 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~ 335 (686)
.|++-+..+.+.+...|.++.
T Consensus 210 TLe~R~~~~eR~RdlaEeNl~ 230 (538)
T PF05781_consen 210 TLEKRLKLEERSRDLAEENLK 230 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777777763
No 452
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.14 E-value=98 Score=26.05 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 005641 656 RIILLFYLKSFAGICTSLLD 675 (686)
Q Consensus 656 Rl~~l~Y~vlLHlwV~~vL~ 675 (686)
|.-.++|.+++=++++++++
T Consensus 37 ~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333
No 453
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=22.10 E-value=1.1e+03 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 454 KVAMLEVECATLQQELQDMEARLK 477 (686)
Q Consensus 454 Qis~LE~El~qlKQELq~le~el~ 477 (686)
++..++.++.+++.++..++..+.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666667777776666665
No 454
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.07 E-value=1.3e+03 Score=27.45 Aligned_cols=105 Identities=9% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 318 QELSVYKSEVTKVESNLAEALAAK--NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (686)
Q Consensus 318 ~eL~~eQ~~~~q~esel~~qL~ak--e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eL 395 (686)
......+..|+..+....++...+ ...+..++.++..+...--..-..+.+...+.+.|+.+....... +.++..+|
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~-i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQK-IKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005641 396 ASVERRAEEERAAHNATKMAAMEREVEL 423 (686)
Q Consensus 396 kslq~~lEqE~~aHs~Tr~eal~Re~eL 423 (686)
......+.+...+-.++-.....|..+.
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHHH
No 455
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.83 E-value=1.1e+03 Score=26.23 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 343 SEIETLVSSIDALKKQAALSEG---------NLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 343 ~ei~~Le~rL~~l~qel~~~k~---------~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
+.+.+|+.||..++.-+..... ....+..-...|...++.+...-+..++..|+.+...++
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~ 278 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELE 278 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4457777788877777766221 122344455666666666644446666666666666554
No 456
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=21.66 E-value=1.4e+02 Score=29.74 Aligned_cols=46 Identities=22% Similarity=0.043 Sum_probs=34.0
Q ss_pred HHHHhhhhhhhHHHHHHHhhh-------chhHHHHHHHHHHHHHHHHHHHhcc
Q 005641 631 LQKAAKLLDSGAVRATRFLWR-------YPIARIILLFYLKSFAGICTSLLDV 676 (686)
Q Consensus 631 vk~a~s~lDs~~ir~g~fLRR-------~P~aRl~~l~Y~vlLHlwV~~vL~t 676 (686)
+--++..+-+++|-+|||+|= +|..=+--++..+--|.|.|+++++
T Consensus 109 ~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l~~~i~~~l~~~~~~fv~~~~ 161 (168)
T PF07099_consen 109 FIILISFLSSFGIYLGRFLRLNSWDILTNPQSLIRDILSSLSPHAWLFVLLFT 161 (168)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHhCCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456778899999999999994 5666555556666667777777664
No 457
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.58 E-value=6.8e+02 Score=28.58 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (686)
Q Consensus 545 eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl 581 (686)
....++..+...+......+..|..+...|..+++..
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666666555554
No 458
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.44 E-value=6.5e+02 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELS 321 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~ 321 (686)
+......++..++..+.
T Consensus 43 ~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 459
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=8.9e+02 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=18.9
Q ss_pred hHHHHHHhhhh-----hhhHHHHHHHhhhchhHH
Q 005641 628 SVQLQKAAKLL-----DSGAVRATRFLWRYPIAR 656 (686)
Q Consensus 628 ~~rvk~a~s~l-----Ds~~ir~g~fLRR~P~aR 656 (686)
..-|..|+..+ +.-.-.|-.|+.+||-.=
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~ 175 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST 175 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Confidence 34567777666 222356778999999764
No 460
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.29 E-value=5.9e+02 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~q 527 (686)
+-++..+..+......++..+..+..++..+...
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 461
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.26 E-value=1.5e+03 Score=27.37 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALAR 436 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~ 436 (686)
..++..-..|..||..
T Consensus 120 ~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 120 EKIEEAAEALYKALKA 135 (701)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444455555544
No 462
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.13 E-value=1.1e+03 Score=25.87 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 266 TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (686)
Q Consensus 266 al~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~e 331 (686)
-|+.|+.-+--+++||++....|.-+-.. +..|-.+|.|.|++|-..|
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetE------------------I~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETE------------------IDELKSQLARMREDWIEEE 109 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888776655544333 3456688999999997655
No 463
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=21.11 E-value=32 Score=40.01 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 005641 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAERE----LSRSYEARIKQLEQELSVYKS 325 (686)
Q Consensus 271 e~qLav~~~RLrk~~qel~~~~aqLEe~~~el~e----k~~~Le~~l~~LQ~eL~~eQ~ 325 (686)
|.+|-.-...+.|-..+++.+...=|+-|+.+++ ..+.+-.+|+.+|.+|.+++.
T Consensus 396 ErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~ 454 (495)
T PF12004_consen 396 ERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHA 454 (495)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHH
Confidence 3444444444555566666665555555554433 334444667777777766654
No 464
>PRK04325 hypothetical protein; Provisional
Probab=20.83 E-value=5.6e+02 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEELLVAERELSRSYEARI 313 (686)
Q Consensus 285 ~qel~~~~aqLEe~~~el~ek~~~Le~~l 313 (686)
..+|-.+.+-.|..+.+|.+.+..-+..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333333
No 465
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.78 E-value=6.3e+02 Score=22.84 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH------------HHHHHHHHHHHHHhhHH
Q 005641 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI------------QMQAWQDEVERARQGQR 508 (686)
Q Consensus 441 L~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~------------~lk~Lq~EL~~lR~~~~ 508 (686)
++........++.++..+-.....+-..+.+.+.-..-+.....+..-... ....|...+..+.....
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 509 DAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~lk 532 (686)
.++..+..+++++.+++.++..+.
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 466
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.74 E-value=6e+02 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 554 TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSE 591 (686)
Q Consensus 554 te~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~ 591 (686)
.+........++.+..|.......++.+..+++..+.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445666666666666666666666655554443
No 467
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.73 E-value=9.8e+02 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
.+.+.++.+|+-|++++..++..|..+
T Consensus 26 ~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 26 KRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 347788888888888887777777655
No 468
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.57 E-value=4.8e+02 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
+..|..++..|..+...++.+++..+.+..|
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 469
>PRK04406 hypothetical protein; Provisional
Probab=20.50 E-value=5.8e+02 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 286 QEYKSENAQLEELLVAERE 304 (686)
Q Consensus 286 qel~~~~aqLEe~~~el~e 304 (686)
.+|-.+.+-.|..+.+|.+
T Consensus 14 ~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 14 NDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 470
>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []. They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.
Probab=20.49 E-value=69 Score=35.62 Aligned_cols=26 Identities=12% Similarity=0.292 Sum_probs=18.6
Q ss_pred HHHHHHHHH-------------HHHHHHHHhc---cccCCCC
Q 005641 657 IILLFYLKS-------------FAGICTSLLD---VFVAPSS 682 (686)
Q Consensus 657 l~~l~Y~vl-------------LHlwV~~vL~---ty~~p~~ 682 (686)
-++|+||+| ||.||+..|+ +|+-.|.
T Consensus 250 n~vf~yml~r~~~~~~~~~~~~l~~~~l~cly~sysy~gnei 291 (346)
T PF03261_consen 250 NVVFVYMLCRDVVSGEVSSERELQAIVLTCLYLSYSYMGNEI 291 (346)
T ss_dssp HHHHHHHHHHHHS-TT--SHHHHHHHHHHHHHHHHHHH-SSS
T ss_pred hhhhhHHHHHHhhccccCCHHHHHHHHHHHHHHHhhhcCccc
Confidence 357788887 8999977666 7776654
No 471
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=1.7e+03 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 435 ~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
.-++..+......+..++.++..--.++-.++..+........+..
T Consensus 694 ~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~ 739 (1104)
T COG4913 694 AIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVH 739 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555666666666656666666666666666555553
No 472
>PF14992 TMCO5: TMCO5 family
Probab=20.41 E-value=1.1e+03 Score=25.68 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005641 422 ELEHRAAEASMALARIQRIADER 444 (686)
Q Consensus 422 eLEeEnaeLseAL~~lQrkL~Ee 444 (686)
.||.+|.-++.++.++|+++.+.
T Consensus 74 ~LE~~ne~l~~~~~elq~k~~e~ 96 (280)
T PF14992_consen 74 KLEKENEHLSKSVQELQRKQDEQ 96 (280)
T ss_pred HHhhhhHhhhhhhhhhhhhhccc
Confidence 45556666666667777766544
No 473
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.30 E-value=1.5e+03 Score=26.86 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~a 408 (686)
+++++.|+..+.++.+=++....++..+-..+..=-.+.+.-|.+|+...+..+..|+.+.+.|+..
T Consensus 139 ~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~ 205 (508)
T PF00901_consen 139 ENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG 205 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566888888888777777777777777544444344444457888888888888888888876654
No 474
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=20.07 E-value=7e+02 Score=23.04 Aligned_cols=54 Identities=31% Similarity=0.396 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444 (686)
Q Consensus 391 Le~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee 444 (686)
-+..+..|..-++.|+.+....-.++|.-+-.|+.|++.+.=--...++...+.
T Consensus 11 er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk 64 (94)
T PF04576_consen 11 ERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEARQYQRMAEEK 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888888888888888889988855554344445544444
No 475
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.05 E-value=1.5e+03 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ak 341 (686)
..++.+.+|++-+.+.=.=+...+.++=.++..+
T Consensus 201 ~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~L 234 (570)
T COG4477 201 EAEEHMIALRSIMERIPSLLAELQTELPGQLQDL 234 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 3334444555554444444444455544444333
No 476
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.05 E-value=1.1e+03 Score=26.50 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 005641 546 LEKRYRELTDLL 557 (686)
Q Consensus 546 LE~qlr~Lte~L 557 (686)
-+..||+|.+.|
T Consensus 192 KK~KIR~lq~~L 203 (342)
T PF06632_consen 192 KKAKIRELQRLL 203 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 477
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.02 E-value=6.6e+02 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
-.|.....+++.++..++..++.....+
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666555555555554
No 478
>PLN02320 seryl-tRNA synthetase
Probab=20.01 E-value=9.8e+02 Score=28.25 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (686)
Q Consensus 498 ~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~q 577 (686)
+++-.+-...+.+..++..+..+.+.+.+++.. .........+..+.+.|++++...-.++..+..+...+...
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~------~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG------KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccC--CCCccccccchhhhHHHHHHhhhhhhhH---HHHHHH-hhh
Q 005641 578 LEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSL--EPLPLHHRHIAGASVQLQKAAKLLDSGA---VRATRF-LWR 651 (686)
Q Consensus 578 LErl~~~~~~e~~~~ersr~s~~~~~~~~dd~~~~~l--~P~~~~~~~~~~~~~rvk~a~s~lDs~~---ir~g~f-LRR 651 (686)
|=.+.. ...+.|.-+++...... .|.+.+.+. -...+...+..||--. +.+.+| ...
T Consensus 167 iPN~~h--------------~~VP~G~de~~~~~~~~G~~~~f~f~~r---dH~eLg~~L~Lfdf~~aakvsG~~f~~L~ 229 (502)
T PLN02320 167 IPNMTH--------------PDVPVGGEDSSAVRKEVGSPREFSFPIK---DHLQLGKELDLFDFDAAAEVSGSKFYYLK 229 (502)
T ss_pred CCCCCC--------------ccCCCCCCCCCeEEEecCCCCCCCCCCc---CHHHHHHHcCCccccchhhcCCCeeEEeC
Q ss_pred chhHHH--HHHHHHHHHHH
Q 005641 652 YPIARI--ILLFYLKSFAG 668 (686)
Q Consensus 652 ~P~aRl--~~l~Y~vlLHl 668 (686)
...+++ .++=||+-.|.
T Consensus 230 g~~a~Le~ALi~f~ld~~~ 248 (502)
T PLN02320 230 NEAVLLEMALVNWTLSEVM 248 (502)
T ss_pred CHHHHHHHHHHHHHHHHHH
Done!