Query 005641
Match_columns 686
No_of_seqs 177 out of 197
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 99.9 2.2E-21 7.6E-26 186.6 21.6 161 241-417 3-167 (168)
2 1c1g_A Tropomyosin; contractIl 98.9 7.8E-05 2.7E-09 72.9 44.8 34 549-582 245-278 (284)
3 1c1g_A Tropomyosin; contractIl 98.8 0.00015 5.3E-09 70.8 44.2 44 544-587 233-276 (284)
4 1i84_S Smooth muscle myosin he 98.6 1.4E-07 4.7E-12 115.1 12.1 90 288-381 869-958 (1184)
5 1i84_S Smooth muscle myosin he 98.4 5.6E-07 1.9E-11 109.8 10.8 44 544-587 1119-1162(1184)
6 2v71_A Nuclear distribution pr 97.8 0.0044 1.5E-07 61.1 22.7 103 296-399 9-115 (189)
7 3o0z_A RHO-associated protein 97.1 0.18 6E-06 48.9 22.8 83 388-470 64-153 (168)
8 2v71_A Nuclear distribution pr 97.0 0.21 7.2E-06 49.2 22.9 148 421-589 27-174 (189)
9 3na7_A HP0958; flagellar bioge 96.7 0.31 1.1E-05 49.6 23.0 15 345-359 69-83 (256)
10 3na7_A HP0958; flagellar bioge 96.7 0.41 1.4E-05 48.7 23.9 93 430-530 37-129 (256)
11 3vkg_A Dynein heavy chain, cyt 96.3 1.2 4E-05 59.8 30.0 89 492-588 2015-2103(3245)
12 2dfs_A Myosin-5A; myosin-V, in 96.3 0.18 6.3E-06 61.2 20.9 22 417-438 1022-1043(1080)
13 3vkg_A Dynein heavy chain, cyt 96.0 2 6.7E-05 57.7 29.7 45 434-478 2023-2067(3245)
14 2dfs_A Myosin-5A; myosin-V, in 95.8 0.3 1E-05 59.4 19.8 29 278-306 923-951 (1080)
15 2ocy_A RAB guanine nucleotide 95.3 1.2 4E-05 42.7 17.8 88 492-579 59-146 (154)
16 2v66_B Nuclear distribution pr 94.1 2 6.7E-05 39.0 15.3 104 448-576 5-108 (111)
17 4gkw_A Spindle assembly abnorm 93.7 4.5 0.00015 37.6 17.5 49 548-596 98-146 (167)
18 2fxo_A Myosin heavy chain, car 93.7 4.2 0.00014 37.3 19.3 92 291-386 28-119 (129)
19 3oja_B Anopheles plasmodium-re 93.5 0.58 2E-05 52.1 13.2 122 446-588 463-584 (597)
20 2v66_B Nuclear distribution pr 93.2 3.8 0.00013 37.1 15.6 93 250-363 5-97 (111)
21 2b9c_A Striated-muscle alpha t 91.4 3.8 0.00013 38.8 13.9 61 496-557 85-145 (147)
22 3u1c_A Tropomyosin alpha-1 cha 91.3 5.6 0.00019 35.1 14.1 66 509-582 34-99 (101)
23 3oja_B Anopheles plasmodium-re 90.6 4.9 0.00017 44.6 16.4 29 294-322 453-481 (597)
24 3u59_A Tropomyosin beta chain; 89.7 7.9 0.00027 34.0 13.6 65 510-582 35-99 (101)
25 2e7s_A RAB guanine nucleotide 88.0 2.4 8.2E-05 39.7 9.3 89 308-401 43-132 (135)
26 1x79_B RAB GTPase binding effe 87.6 11 0.00038 34.1 13.2 45 342-386 44-88 (112)
27 2v4h_A NF-kappa-B essential mo 87.2 11 0.00037 34.1 12.7 81 499-584 25-105 (110)
28 1x79_B RAB GTPase binding effe 85.9 11 0.00037 34.2 12.1 70 274-343 11-84 (112)
29 2eqb_B RAB guanine nucleotide 85.4 8.7 0.0003 34.0 11.0 66 496-561 31-96 (97)
30 2ocy_A RAB guanine nucleotide 84.9 27 0.00094 33.2 20.8 70 390-463 55-125 (154)
31 2e7s_A RAB guanine nucleotide 84.1 1.1 3.7E-05 41.9 4.9 83 494-576 49-131 (135)
32 3tnu_B Keratin, type II cytosk 82.6 28 0.00097 31.6 14.7 11 495-505 114-124 (129)
33 3u1c_A Tropomyosin alpha-1 cha 82.2 26 0.00087 30.8 15.4 20 345-364 46-65 (101)
34 3tnu_A Keratin, type I cytoske 82.0 30 0.001 31.6 14.2 11 495-505 116-126 (131)
35 2efr_A General control protein 81.2 38 0.0013 32.2 24.8 41 431-471 76-116 (155)
36 2eqb_B RAB guanine nucleotide 80.3 31 0.0011 30.5 13.8 70 309-382 24-94 (97)
37 3tnu_B Keratin, type II cytosk 80.2 34 0.0012 31.1 13.8 14 285-298 38-51 (129)
38 3q8t_A Beclin-1; autophagy, AT 80.0 30 0.001 30.2 13.5 68 414-481 21-95 (96)
39 2jee_A YIIU; FTSZ, septum, coi 79.8 26 0.00089 30.0 11.5 50 337-386 21-70 (81)
40 2fxo_A Myosin heavy chain, car 79.4 37 0.0013 30.9 19.2 47 427-473 78-124 (129)
41 3ol1_A Vimentin; structural ge 78.9 31 0.001 31.2 12.5 16 544-559 86-101 (119)
42 3hnw_A Uncharacterized protein 78.0 21 0.00072 33.2 11.5 53 346-399 78-130 (138)
43 4gkw_A Spindle assembly abnorm 77.4 46 0.0016 31.0 23.0 112 346-473 42-160 (167)
44 3tnu_A Keratin, type I cytoske 76.5 35 0.0012 31.1 12.4 13 285-297 40-52 (131)
45 3s4r_A Vimentin; alpha-helix, 76.5 38 0.0013 29.4 13.0 71 496-583 14-84 (93)
46 2jee_A YIIU; FTSZ, septum, coi 76.3 26 0.00088 30.0 10.4 69 510-586 11-79 (81)
47 3cve_A Homer protein homolog 1 76.2 30 0.001 29.0 10.6 43 336-378 7-49 (72)
48 3a7p_A Autophagy protein 16; c 75.7 28 0.00097 33.1 11.6 47 544-590 78-124 (152)
49 3q8t_A Beclin-1; autophagy, AT 75.0 42 0.0014 29.3 13.7 72 503-582 23-94 (96)
50 2efr_A General control protein 74.4 61 0.0021 30.8 24.8 46 434-479 107-152 (155)
51 2v4h_A NF-kappa-B essential mo 73.9 51 0.0017 29.7 12.8 20 366-385 85-104 (110)
52 3hnw_A Uncharacterized protein 73.5 21 0.00073 33.2 10.2 22 448-469 77-98 (138)
53 3s4r_A Vimentin; alpha-helix, 73.0 47 0.0016 28.9 13.0 34 342-375 55-88 (93)
54 3u59_A Tropomyosin beta chain; 72.5 49 0.0017 28.9 14.8 26 344-369 45-70 (101)
55 3cvf_A Homer-3, homer protein 72.4 20 0.00069 30.5 8.8 43 335-377 12-54 (79)
56 3mq9_A Bone marrow stromal ant 72.1 81 0.0028 33.9 16.0 35 496-530 434-468 (471)
57 3i00_A HIP-I, huntingtin-inter 71.1 37 0.0013 31.0 10.9 48 453-506 15-62 (120)
58 3a7p_A Autophagy protein 16; c 68.7 59 0.002 30.9 12.0 66 313-382 70-135 (152)
59 2xdj_A Uncharacterized protein 67.3 54 0.0019 28.0 10.5 60 419-478 7-66 (83)
60 3mq9_A Bone marrow stromal ant 67.1 1.2E+02 0.0041 32.6 16.0 21 313-333 399-419 (471)
61 3i00_A HIP-I, huntingtin-inter 66.9 42 0.0014 30.6 10.3 67 513-583 16-82 (120)
62 3ghg_A Fibrinogen alpha chain; 66.3 79 0.0027 35.5 14.2 15 645-659 487-501 (562)
63 1f5n_A Interferon-induced guan 65.3 1.7E+02 0.0059 33.2 17.3 21 307-327 522-542 (592)
64 3mq7_A Bone marrow stromal ant 64.9 83 0.0029 28.7 14.0 12 318-329 32-43 (121)
65 1gk4_A Vimentin; intermediate 62.5 71 0.0024 27.0 11.8 70 424-506 7-76 (84)
66 3iox_A AGI/II, PA; alpha helix 62.5 1.7E+02 0.0058 32.7 15.9 31 308-338 6-36 (497)
67 1l8d_A DNA double-strand break 62.1 79 0.0027 27.4 12.7 28 293-320 13-40 (112)
68 3ol1_A Vimentin; structural ge 61.7 91 0.0031 28.0 16.0 11 286-296 30-40 (119)
69 3swk_A Vimentin; cytoskeleton, 61.2 77 0.0026 27.0 11.1 15 544-558 66-80 (86)
70 2zqm_A Prefoldin beta subunit 61.1 83 0.0028 27.3 11.2 34 441-474 8-41 (117)
71 3cvf_A Homer-3, homer protein 60.5 69 0.0024 27.3 9.7 65 338-403 8-72 (79)
72 3ghg_A Fibrinogen alpha chain; 59.1 1.5E+02 0.005 33.5 14.6 15 568-582 232-246 (562)
73 1deq_A Fibrinogen (alpha chain 58.9 79 0.0027 34.2 12.1 44 544-587 116-159 (390)
74 1go4_E MAD1 (mitotic arrest de 58.4 18 0.00062 32.1 6.1 32 447-478 13-44 (100)
75 3mov_A Lamin-B1; LMNB1, B-type 58.1 38 0.0013 29.6 8.0 74 419-505 13-86 (95)
76 2b9c_A Striated-muscle alpha t 58.1 1.2E+02 0.0042 28.3 12.9 46 354-400 70-115 (147)
77 1m1j_B Fibrinogen beta chain; 57.3 2.3E+02 0.008 31.3 17.1 15 283-297 100-114 (464)
78 3mq7_A Bone marrow stromal ant 56.8 1.2E+02 0.004 27.7 14.4 35 345-386 73-107 (121)
79 1x8y_A Lamin A/C; structural p 53.9 65 0.0022 27.4 8.7 50 448-507 30-79 (86)
80 3swy_A Cyclic nucleotide-gated 53.6 59 0.002 25.0 7.4 40 302-341 3-42 (46)
81 3jsv_C NF-kappa-B essential mo 51.9 1.2E+02 0.0042 26.5 10.4 74 505-583 9-82 (94)
82 3oja_A Leucine-rich immune mol 50.1 2.7E+02 0.0092 29.9 17.0 7 421-427 445-451 (487)
83 3swf_A CGMP-gated cation chann 49.9 80 0.0027 26.6 8.3 46 301-346 4-49 (74)
84 1ic2_A Tropomyosin alpha chain 49.4 1.1E+02 0.0039 25.4 11.8 28 342-369 40-67 (81)
85 3oja_A Leucine-rich immune mol 47.5 2.9E+02 0.01 29.6 16.1 33 545-577 453-485 (487)
86 2i1j_A Moesin; FERM, coiled-co 46.7 33 0.0011 38.8 7.4 14 8-21 26-39 (575)
87 1m1j_C Fibrinogen gamma chain; 46.3 1.9E+02 0.0066 31.4 13.0 43 430-472 25-67 (409)
88 3cl3_D NF-kappa-B essential mo 45.7 51 0.0017 30.5 7.0 82 295-383 21-102 (130)
89 3jsv_C NF-kappa-B essential mo 44.8 1.6E+02 0.0055 25.8 10.9 35 351-385 41-75 (94)
90 1wt6_A Myotonin-protein kinase 44.3 1.5E+02 0.005 25.4 9.1 41 278-318 26-66 (81)
91 1deq_A Fibrinogen (alpha chain 44.2 3.4E+02 0.012 29.4 15.4 46 431-476 112-157 (390)
92 3cve_A Homer protein homolog 1 43.7 1.4E+02 0.0049 24.9 10.6 30 305-334 15-44 (72)
93 3trt_A Vimentin; cytoskeleton, 41.9 1.2E+02 0.004 24.8 8.2 20 511-530 55-74 (77)
94 1fxk_A Prefoldin; archaeal pro 41.7 1.6E+02 0.0056 25.0 11.3 26 447-472 9-34 (107)
95 2i1j_A Moesin; FERM, coiled-co 41.4 65 0.0022 36.4 8.7 21 512-532 511-531 (575)
96 1go4_E MAD1 (mitotic arrest de 41.3 1.5E+02 0.0051 26.3 9.1 32 499-530 13-44 (100)
97 1l8d_A DNA double-strand break 41.3 1.7E+02 0.006 25.2 13.5 87 500-586 12-102 (112)
98 3swk_A Vimentin; cytoskeleton, 40.2 1.7E+02 0.0059 24.8 11.3 17 281-297 5-21 (86)
99 1t3j_A Mitofusin 1; coiled coi 40.1 99 0.0034 27.3 7.7 64 249-326 30-93 (96)
100 1gd2_E Transcription factor PA 39.6 1.4E+02 0.0049 24.6 8.3 12 323-334 19-30 (70)
101 2w83_C C-JUN-amino-terminal ki 37.2 1.1E+02 0.0037 25.9 7.2 49 324-372 25-73 (77)
102 3tul_A Cell invasion protein S 35.7 2.9E+02 0.0099 26.1 12.4 25 388-412 109-133 (158)
103 3qh9_A Liprin-beta-2; coiled-c 35.6 2.1E+02 0.0071 24.5 9.5 55 516-578 23-77 (81)
104 3a7o_A Autophagy protein 16; c 35.6 1.2E+02 0.0039 25.5 6.9 47 337-383 26-72 (75)
105 3iv1_A Tumor susceptibility ge 34.9 2E+02 0.0069 24.4 8.5 10 286-295 35-44 (78)
106 3nmd_A CGMP dependent protein 34.8 1.7E+02 0.0058 24.5 8.0 46 435-480 22-67 (72)
107 1gk4_A Vimentin; intermediate 33.8 2.1E+02 0.0073 24.0 11.6 14 288-301 6-19 (84)
108 2xdj_A Uncharacterized protein 32.9 2.3E+02 0.0078 24.1 10.1 36 332-367 23-58 (83)
109 1x8y_A Lamin A/C; structural p 32.8 2.3E+02 0.0077 24.0 9.9 11 388-398 65-75 (86)
110 3u06_A Protein claret segregat 32.5 64 0.0022 35.0 6.6 42 290-331 3-44 (412)
111 3iox_A AGI/II, PA; alpha helix 31.8 5.8E+02 0.02 28.5 15.2 54 302-355 7-60 (497)
112 3m9b_A Proteasome-associated A 30.4 48 0.0016 33.9 4.7 41 547-587 53-93 (251)
113 3bas_A Myosin heavy chain, str 30.3 2.5E+02 0.0087 23.8 11.5 29 557-585 58-86 (89)
114 3ni0_A Bone marrow stromal ant 29.3 2.9E+02 0.01 24.3 13.5 43 433-475 47-89 (99)
115 2oqq_A Transcription factor HY 28.8 1.4E+02 0.0049 22.5 5.8 31 348-378 8-38 (42)
116 4etp_A Kinesin-like protein KA 28.7 91 0.0031 33.7 6.9 55 292-350 5-59 (403)
117 1hjb_A Ccaat/enhancer binding 28.1 2E+02 0.0067 24.8 7.5 44 322-365 29-72 (87)
118 4dk0_A Putative MACA; alpha-ha 27.7 57 0.0019 33.6 5.0 24 511-534 128-151 (369)
119 1wle_A Seryl-tRNA synthetase; 27.5 3.7E+02 0.013 29.8 11.8 26 309-334 75-100 (501)
120 1m1j_A Fibrinogen alpha subuni 27.2 6.4E+02 0.022 27.9 13.0 91 492-586 66-156 (491)
121 2w6a_A ARF GTPase-activating p 27.1 2.5E+02 0.0084 22.8 7.3 41 282-322 19-59 (63)
122 2wwb_C SEC61BETA, protein tran 27.0 14 0.00047 32.7 0.1 14 657-670 78-91 (96)
123 3trt_A Vimentin; cytoskeleton, 27.0 2.5E+02 0.0087 22.7 11.7 26 441-466 51-76 (77)
124 1ci6_A Transcription factor AT 26.1 1.9E+02 0.0066 23.1 6.8 32 346-377 26-57 (63)
125 1m1j_C Fibrinogen gamma chain; 25.5 2E+02 0.0068 31.3 8.9 15 285-299 33-47 (409)
126 3qne_A Seryl-tRNA synthetase, 25.3 2.2E+02 0.0077 31.6 9.4 28 307-334 36-63 (485)
127 4b6x_A AVRRPS4, avirulence pro 25.1 3.2E+02 0.011 23.3 8.4 25 375-400 26-50 (90)
128 1g6u_A Domain swapped dimer; d 25.0 2.2E+02 0.0074 21.3 6.3 8 496-503 5-12 (48)
129 1ci6_A Transcription factor AT 24.8 2.7E+02 0.0091 22.2 7.6 26 448-473 32-57 (63)
130 3qh9_A Liprin-beta-2; coiled-c 24.4 3.3E+02 0.011 23.2 8.3 43 343-385 26-68 (81)
131 2ww9_C Protein transport prote 24.3 23 0.00078 30.8 1.0 15 657-671 69-83 (87)
132 3fpp_A Macrolide-specific effl 24.2 1.5E+02 0.005 30.2 7.3 26 510-535 126-151 (341)
133 3q0x_A Centriole protein; cent 24.2 1.9E+02 0.0063 29.2 7.7 50 544-593 167-216 (228)
134 2no2_A HIP-I, huntingtin-inter 23.7 3.8E+02 0.013 23.7 16.1 22 359-380 70-91 (107)
135 4i0x_B ESAT-6-like protein MAB 23.5 3.3E+02 0.011 23.0 9.7 64 275-338 10-76 (103)
136 1m1j_B Fibrinogen beta chain; 23.5 7.8E+02 0.027 27.2 17.5 14 284-297 94-107 (464)
137 3nmd_A CGMP dependent protein 23.5 2.7E+02 0.0091 23.3 7.2 44 544-587 22-65 (72)
138 2dq0_A Seryl-tRNA synthetase; 23.0 2.4E+02 0.0084 30.8 9.1 28 307-334 34-61 (455)
139 3m91_A Proteasome-associated A 22.8 1.9E+02 0.0066 22.5 5.9 32 282-313 15-46 (51)
140 3m9b_A Proteasome-associated A 22.7 1.2E+02 0.0041 31.0 6.0 40 493-532 56-95 (251)
141 2yy0_A C-MYC-binding protein; 21.8 1.3E+02 0.0044 23.5 4.8 18 511-528 32-49 (53)
142 1gu4_A CAAT/enhancer binding p 21.7 3.6E+02 0.012 22.6 8.1 28 446-473 43-70 (78)
143 4emc_A Monopolin complex subun 21.6 4.2E+02 0.014 26.0 9.3 28 334-361 32-59 (190)
144 1hjb_A Ccaat/enhancer binding 21.5 3.9E+02 0.013 22.9 8.6 32 446-477 43-74 (87)
145 3cl3_D NF-kappa-B essential mo 21.3 1.9E+02 0.0066 26.7 6.5 29 357-385 9-37 (130)
146 1ses_A Seryl-tRNA synthetase; 20.9 2.8E+02 0.0095 30.0 8.9 27 308-334 32-58 (421)
147 1t3j_A Mitofusin 1; coiled coi 20.8 3.3E+02 0.011 23.9 7.7 36 315-353 29-64 (96)
148 2lw1_A ABC transporter ATP-bin 20.8 3.8E+02 0.013 22.5 9.8 52 508-568 25-76 (89)
149 1gu4_A CAAT/enhancer binding p 20.6 2.7E+02 0.0093 23.4 6.9 44 321-364 28-71 (78)
150 1jcd_A Major outer membrane li 20.4 3.1E+02 0.011 21.4 6.6 32 447-478 12-43 (52)
151 3efg_A Protein SLYX homolog; x 20.3 3.1E+02 0.011 22.9 7.2 43 544-586 10-52 (78)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=186.59 Aligned_cols=161 Identities=22% Similarity=0.224 Sum_probs=141.8
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (686)
Q Consensus 241 ~~~ek~~~lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL 320 (686)
+.|+|+++|++||+++|.+||+|+|+ ++||||..+|+.+..+++|..+++++++|+.|++.+..|+.++
T Consensus 3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 005641 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA 396 (686)
Q Consensus 321 ~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe----~eLk 396 (686)
..+|..|.+...+ ..+. ...+.+|+++|.+|+.++...+.++..+..+++.|++.+++++|. +.+++ ++|+
T Consensus 72 ~~LQa~L~qEr~~-r~q~---se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK 146 (168)
T 3o0z_A 72 YQLQAILEAERRD-RGHD---SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 9999999998887 4555 788899999999999999999999999999999999999999995 99999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 397 SVERRAEEERAAHNATKMAAM 417 (686)
Q Consensus 397 slq~~lEqE~~aHs~Tr~eal 417 (686)
++|++|++|..+|..|++++.
T Consensus 147 alQ~~~eqE~~~H~~TkarL~ 167 (168)
T 3o0z_A 147 SLQQRLEQEVNEHKVTKARLT 167 (168)
T ss_dssp HHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999977653
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.89 E-value=7.8e-05 Score=72.87 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 549 qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
++..+...+...+..+..+....+.+..+++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
T 1c1g_A 245 SVTKLEKSIDDLEDELYAQKLKYKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444433
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.80 E-value=0.00015 Score=70.76 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
..++.++..+...+..-+..+..+..+.+.+..++.++...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 233 KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666555444
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.59 E-value=1.4e-07 Score=115.13 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 005641 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (686)
Q Consensus 288 l~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls 367 (686)
++.....++..+.++.++...|+..+..++.++..++..+...+.. +.....++..|+.++..++.++......+.
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~----l~~l~~~~~~Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM----RVRLAAKKQELEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444445544444444433333322 222244444455455444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 005641 368 SLQMNMESIMRNRE 381 (686)
Q Consensus 368 ~lqaE~~~L~qel~ 381 (686)
.++.+...+..++.
T Consensus 945 el~~e~~~le~el~ 958 (1184)
T 1i84_S 945 QLQAEKKKMQQQML 958 (1184)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 44433333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.41 E-value=5.6e-07 Score=109.80 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
..++.++..|.++|.+....+..+..++..|..+++.+..++++
T Consensus 1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444455555555555555444333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.81 E-value=0.0044 Score=61.13 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH---
Q 005641 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN--- 372 (686)
Q Consensus 296 Ee~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE--- 372 (686)
++.+.--++.+..+..+..+++.+|..-|..=+..+.++...|...+..+..|..++..+..++...+.++.....+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777778888888999999989888899988888888888888888888888888888888777766655
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 373 -MESIMRNRELTETRMIQALREELASVE 399 (686)
Q Consensus 373 -~~~L~qel~~~ekRilqsLe~eLkslq 399 (686)
...|+.++..+.. +...+...|..+.
T Consensus 89 ~~~~Lq~el~~l~~-~~~~l~~~ireLE 115 (189)
T 2v71_A 89 QVSVLEDDLSQTRA-IKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3344444444333 2333333333333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.05 E-value=0.18 Score=48.87 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 005641 388 IQALREELASVERRAEEERAAHNAT---KMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE----V 460 (686)
Q Consensus 388 lqsLe~eLkslq~~lEqE~~aHs~T---r~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE----~ 460 (686)
...|+.++..++..++.|+...... -.++..|+..|+.+...+-..+..+...-....-++..|++....++ +
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~ 143 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY 143 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5566667777777777765554333 22333344444333322222211111111111123556666666666 4
Q ss_pred HHHHHHHHHH
Q 005641 461 ECATLQQELQ 470 (686)
Q Consensus 461 El~qlKQELq 470 (686)
+++.+++.++
T Consensus 144 eLKalQ~~~e 153 (168)
T 3o0z_A 144 KLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.95 E-value=0.21 Score=49.23 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005641 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEV 500 (686)
Q Consensus 421 ~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL 500 (686)
..++.+=.++.++-..++..+..+ +..+++++..|...+..++.+++.++.++...+ ......+-.|+.++
T Consensus 27 ~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~------~e~~~~~~~Lq~el 97 (189)
T 2v71_A 27 QEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY------AQSYKQVSVLEDDL 97 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 344444444444444444444433 444445555555555555555555554444432 11112345677888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 501 ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (686)
Q Consensus 501 ~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLEr 580 (686)
..++.....+...|.+++..-..|...... .+..-.+++.++... |++..-||.=..||..|...++|
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~--------~~~SleD~e~kln~a----iEr~alLE~El~EKe~l~~~~QR 165 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERAKRA--------TIMSLEDFEQRLNQA----IERNAFLESELDEKESLLVSVQR 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777766666666555555443333 223346677777666 44555555555577888877777
Q ss_pred HHHHHHHHH
Q 005641 581 EMNRLQEVQ 589 (686)
Q Consensus 581 l~~~~~~e~ 589 (686)
+.--+++..
T Consensus 166 LkdE~rDLk 174 (189)
T 2v71_A 166 LKDEARDLR 174 (189)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 776555543
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.70 E-value=0.31 Score=49.59 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHHH
Q 005641 345 IETLVSSIDALKKQA 359 (686)
Q Consensus 345 i~~Le~rL~~l~qel 359 (686)
+..+..++...+.++
T Consensus 69 i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 69 LQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.70 E-value=0.41 Score=48.68 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005641 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRD 509 (686)
Q Consensus 430 LseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~ 509 (686)
+...+..++..+......+.+++.++..++.++...+..+..++.++...+. .. .+..|+.|+..+...+..
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~-~k-------E~~aL~kEie~~~~~i~~ 108 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS-ER-------ELRSLNIEEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-SS-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HH-------HHHHHHHHHHHHHHHHHH
Confidence 3444455555565666666777777777777777777777777766655430 00 234455666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 510 AENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~ 530 (686)
+++.+..+...+..++..+..
T Consensus 109 lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.32 E-value=1.2 Score=59.83 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk 571 (686)
++..++.++...+..+...+.+|.++++.++.|+.+.+. . ......|+.++......|..=..-+..|.+|+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~-------~-~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT-------L-IRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 344455555555555555555555555555555555544 2 22336677788888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005641 572 AAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 572 ~aL~~qLErl~~~~~~e 588 (686)
.-|..+.+.+..+...-
T Consensus 2087 ~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2087 GRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999998888765554
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.26 E-value=0.18 Score=61.24 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 005641 417 MEREVELEHRAAEASMALARIQ 438 (686)
Q Consensus 417 l~Re~eLEeEnaeLseAL~~lQ 438 (686)
..+...|+.+++.|.+.+.+++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.99 E-value=2 Score=57.71 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 434 L~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
+...+.+|.+.+.++.+++.++..|+.+++.+..|-+.++.++..
T Consensus 2023 l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2023 ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555444444444444433
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.81 E-value=0.3 Score=59.43 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=0.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELS 306 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~ 306 (686)
...|.....+|..+...+|..+..++++.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ----------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.31 E-value=1.2 Score=42.65 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk 571 (686)
.+..|..++..-+.....++.....++.|+..|...|=.--+-|..--+-....++.++..|..+|.+|...|+.+....
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666777777778888877776653211211100123347889999999999999999998888777
Q ss_pred HHHHHHHH
Q 005641 572 AAAEFQLE 579 (686)
Q Consensus 572 ~aL~~qLE 579 (686)
..|..-++
T Consensus 139 ~~LK~v~~ 146 (154)
T 2ocy_A 139 KNLKKVMH 146 (154)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 66665443
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.12 E-value=2 Score=38.99 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~q 527 (686)
..+|..++..|..++++++.++.....+... .+-.|+.||..+|.....+...|.+++..-..|...
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~-------------~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYK-------------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 4566777777777777777776655543333 345688999999988888877777777665555544
Q ss_pred HHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576 (686)
Q Consensus 528 le~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~ 576 (686)
-.. .+..-.+++.++... |++..-||.=..||..|..
T Consensus 72 ~R~--------t~~SLeD~E~k~n~a----iErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 72 KRA--------TIVSLEDFEQRLNQA----IERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHH--------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 333 223336677777665 5566666655556666554
No 17
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.66 E-value=4.5 Score=37.63 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005641 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596 (686)
Q Consensus 548 ~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~ersr 596 (686)
..|++|---|-+|-+.++.|..-+..|+..||...-++.++...+++-.
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~Lk 146 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLS 146 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888899999999999999999999999988887777776665433
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.66 E-value=4.2 Score=37.29 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Q 005641 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (686)
Q Consensus 291 ~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lq 370 (686)
.....+....++.++...|...+..|+..|..++.++...+..+ .+| ......|+..|..+...+.........+.
T Consensus 28 ~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~-~~L---~~~k~eLe~~l~el~~rleeeee~~~~L~ 103 (129)
T 2fxo_A 28 ALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC-DQL---IKNKIQLEAKVKEMNKRLEDEEEMNAELT 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444446667788888888999999999998888777653 444 66777888899988899988888889998
Q ss_pred HHHHHHHHHHHHHHHH
Q 005641 371 MNMESIMRNRELTETR 386 (686)
Q Consensus 371 aE~~~L~qel~~~ekR 386 (686)
+..+.+.+++.++.+.
T Consensus 104 ~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 104 AKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888776
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.47 E-value=0.58 Score=52.12 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr 525 (686)
.++..++.++.+.+..+...+++++.....+....+.-... ...+.+++..+++....++.++...+.++++.+
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS------SDNLNKVFTHLKERQAFKLRETQARRTEADAKQ 536 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH------HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhh
Confidence 34445555555555566666666555444333222110001 122333444444443444444444444444444
Q ss_pred HHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 526 VEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (686)
Q Consensus 526 ~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e 588 (686)
.+++. +++++..+...+...+.+++.+..|.+.+..++..++.....|
T Consensus 537 ~~~~~---------------~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 537 KETED---------------LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cchhh---------------HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33332 4456666666666777778888888888888888887755554
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.24 E-value=3.8 Score=37.09 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (686)
Q Consensus 250 qkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q 329 (686)
.+.|-..+..|+.|++. .+.++.....+..+....|+..+..++.....|...++.|+......-+.-+-
T Consensus 5 ~rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 34566777888888876 78888888888888888888888888888888888888888877664433333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 005641 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (686)
Q Consensus 330 ~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k 363 (686)
.... +.+++.++..+-+....+.
T Consensus 75 t~~S-----------LeD~E~k~n~aiErnalLE 97 (111)
T 2v66_B 75 TIVS-----------LEDFEQRLNQAIERNAFLE 97 (111)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-----------HHHHHHHHHHHHHHHHHHH
Confidence 3333 2777777765555444443
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.40 E-value=3.8 Score=38.75 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~L 557 (686)
+..+|.+.......++.++..|+.++.-+-+.|..+....+++ +.+...|+.+|+.|++.|
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka-s~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL-LSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3445555555555667777777777777777777766554544 567799999999987654
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.34 E-value=5.6 Score=35.13 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 509 ~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
.++.....++.++..|+..+..+..+++. ++.+|....+.|.+.........++..+|..++..++
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~--------~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQ--------VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444445555555555555555554432 4557778888888888888888889999999988764
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.63 E-value=4.9 Score=44.60 Aligned_cols=29 Identities=28% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 294 QLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 294 qLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
++++.+.++......++++..+.++.+..
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~ 481 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQG 481 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444333
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.69 E-value=7.9 Score=34.00 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
++.....++.++..|+..+..+..+++ .++.++......|...........++..+|..++..++
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld--------~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVE--------KYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555555555555444443 24557888888888888888888999999999988764
No 25
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.99 E-value=2.4 Score=39.66 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL-~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.....+..|..+|..++.-+...+.. ....+.++.+|-+.| +.+++-+...+..-..++.-++.|...+.+.+.
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~----~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~- 117 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEE----ADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM- 117 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHT----THHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34445556667777776666666655 344477778888777 667777766666666666677888888888877
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 387 MIQALREELASVERR 401 (686)
Q Consensus 387 ilqsLe~eLkslq~~ 401 (686)
++.+++..|+.|+.-
T Consensus 118 ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 118 LLDTLTLQLKNLKKV 132 (135)
T ss_dssp CC-------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 477777777776653
No 26
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.62 E-value=11 Score=34.11 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=26.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
..++.+|..++...+..+..+...+..++.+...=+..|....++
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~ 88 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577777777666666666666666655544444444444443
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.18 E-value=11 Score=34.07 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (686)
Q Consensus 499 EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qL 578 (686)
+++.|...+..+++.|..+..++.+|+.++.....+++.. .-|+.|+.--.+--..--+.=|.+..||..|..+|
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I-----~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV-----PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 3445555555566666666666777766666655544322 33455544444444444455677788888888888
Q ss_pred HHHHHH
Q 005641 579 EKEMNR 584 (686)
Q Consensus 579 Erl~~~ 584 (686)
+.+..+
T Consensus 100 ~~Lq~q 105 (110)
T 2v4h_A 100 EQLQRE 105 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887763
No 28
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.86 E-value=11 Score=34.23 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005641 274 LARVCAGLSSRLQEYKSENAQLEELLVAERE----LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (686)
Q Consensus 274 Lav~~~RLrk~~qel~~~~aqLEe~~~el~e----k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ 343 (686)
|.....+|++.+..+......||..+..-.+ .++.|..+....++.|..+|..+.+.+++...+|..+..
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555554443333 445666666777777777777777777777666633333
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.41 E-value=8.7 Score=34.00 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ 561 (686)
|..+|..-+.....++.....++.||..|...|=.--+-|..--+-....++.++..|..+|-+|.
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444455555555666665555444221111100002223556667777766666653
No 30
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.90 E-value=27 Score=33.22 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECA 463 (686)
Q Consensus 390 sLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEeEnaeLseAL-~~lQrkL~Ee~~ea~eLeeQis~LE~El~ 463 (686)
....+++.++..+..|....... -.....++.|--.|+++| .++...+..++.+...++.++..|+..+.
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~a----E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKA----EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666665554433222 233344555555555554 45566666555555555544444444433
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.14 E-value=1.1 Score=41.94 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 494 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (686)
Q Consensus 494 k~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~a 573 (686)
..|..++..-+.....++.....++.|+..|...|=.--+-|..--+-....++.++..|..+|.+|...|+.+...-..
T Consensus 49 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 49 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128 (135)
T ss_dssp HTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777778888888877665332222211113334788999999999999998888887666555
Q ss_pred HHH
Q 005641 574 AEF 576 (686)
Q Consensus 574 L~~ 576 (686)
|+.
T Consensus 129 LK~ 131 (135)
T 2e7s_A 129 LKK 131 (135)
T ss_dssp ---
T ss_pred HHH
Confidence 544
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.57 E-value=28 Score=31.62 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q 005641 495 AWQDEVERARQ 505 (686)
Q Consensus 495 ~Lq~EL~~lR~ 505 (686)
+|.-|++.+|.
T Consensus 114 ~Ld~EIatYRk 124 (129)
T 3tnu_B 114 ALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555553
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.24 E-value=26 Score=30.85 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHHHHhh
Q 005641 345 IETLVSSIDALKKQAALSEG 364 (686)
Q Consensus 345 i~~Le~rL~~l~qel~~~k~ 364 (686)
+..|..++..++.++.....
T Consensus 46 i~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 46 IVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 34
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.01 E-value=30 Score=31.55 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 005641 495 AWQDEVERARQ 505 (686)
Q Consensus 495 ~Lq~EL~~lR~ 505 (686)
+|.-|++.+|.
T Consensus 116 ~Ld~EIatYRk 126 (131)
T 3tnu_A 116 RLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.22 E-value=38 Score=32.22 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (686)
Q Consensus 431 seAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~ 471 (686)
..-+..+..++.+.-.++...+..+..|+.++..+-.+|..
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666666666555555554444443
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.25 E-value=31 Score=30.51 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL-~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
....+..|..+|..++.-+...+.. ....+.++.+|-..| +.+++-+...+..-..++--++.|...+.+
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~----~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEE----ADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555666666666656555554 234466667776666 555555544443333444444444444433
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.23 E-value=34 Score=31.05 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEEL 298 (686)
Q Consensus 285 ~qel~~~~aqLEe~ 298 (686)
..+++.....|+..
T Consensus 38 i~elrr~iq~L~~e 51 (129)
T 3tnu_B 38 ISEMNRMIQRLRAE 51 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.99 E-value=30 Score=30.23 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005641 414 MAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (686)
Q Consensus 414 ~eal~Re~eLEeEnaeLseAL~~lQrkL~Ee~-------~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk 481 (686)
.+++.....||.+++.+...+..++....... .+...+..++-.+..++.++.-.+.+....+.++++
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444555555444444444433332221 234445555555566666667777777766666653
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.79 E-value=26 Score=30.02 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 337 qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
.++-++.++.+|+.+...+.++....+...+.+..++.+|++++...+.|
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788888888888888888888888888999999999999998
No 40
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.35 E-value=37 Score=30.91 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 427 naeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
.+.|..-+..++..+.+.......|...-.-|+.++..++..|++++
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444445555555555555443
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.91 E-value=31 Score=31.20 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYY 559 (686)
Q Consensus 544 ~eLE~qlr~Lte~Lie 559 (686)
.+||.++..|+++|.-
T Consensus 86 ~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 86 LDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777766665544
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.03 E-value=21 Score=33.22 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq 399 (686)
..|+..+..+.+++..+|..+..++...+.+..++..+..+ +..|+..+..++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~le 130 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444444444444444444445544455555555554443 444444444443
No 43
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=77.44 E-value=46 Score=30.96 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=59.3
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEH 425 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lEqE~~aHs~Tr~eal~Re~eLEe 425 (686)
.+=+++++.+++.-..-...+..+.+++..+++++.-..+. ..+.....-|+.+. +++..+||.
T Consensus 42 ~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~---Lkrn~~qQnQQSlD-------------iRKLrELEA 105 (167)
T 4gkw_A 42 REEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL---LKRNSQQQNQQSLD-------------MRKLGELEA 105 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------------HHHTHHHHH
T ss_pred HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH---HHhhhHHHhHhhhh-------------HHHHHHHHh
Confidence 44445555555544444455566666666666666655442 11222222222222 122222221
Q ss_pred ---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 426 ---RAAE----ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 426 ---Enae----LseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
+... |...+-.+++.|..++.++.+.=.-...|.++-+.+++.|..++
T Consensus 106 DLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 106 DLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 1222 34444557777777777766666666668888888888886554
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.49 E-value=35 Score=31.12 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEE 297 (686)
Q Consensus 285 ~qel~~~~aqLEe 297 (686)
..+++.....|+.
T Consensus 40 i~elrr~iq~L~~ 52 (131)
T 3tnu_A 40 ISELRRTMQNLEI 52 (131)
T ss_dssp -CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.49 E-value=38 Score=29.44 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~ 575 (686)
|..-++.+-..-+.||...+.|+.++..++.+- ++.....|+..|..| ..+|+.+..+++.+.
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~----------~~~~~~~ye~~i~~L-------r~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKGQG----------KSRLGDLYEEEMREL-------RRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 333334333334444555555555555444321 122335678888887 466677777887777
Q ss_pred HHHHHHHH
Q 005641 576 FQLEKEMN 583 (686)
Q Consensus 576 ~qLErl~~ 583 (686)
.++..+..
T Consensus 77 ~e~dnl~~ 84 (93)
T 3s4r_A 77 VERDNLAE 84 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777554
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.27 E-value=26 Score=30.05 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~ 586 (686)
++.+++.+=..|.-|+.+++.++. .+..|.....++...-..+....+.|..|.++|.-+|..+..+.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKe--------kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKE--------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444322 223444455555555555666777778888888888888877643
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.22 E-value=30 Score=29.02 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005641 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (686)
Q Consensus 336 ~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~q 378 (686)
.+|...+..+.+|+.++..+++.+...+.+-..++.|..++.+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454555555666666666555555555444444444444443
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.66 E-value=28 Score=33.06 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~ 590 (686)
+.++.+|+.|.+.|.+|...++.+..|..+|.+++..++.+++.-+.
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999999999999999999998877666544
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.96 E-value=42 Score=29.28 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (686)
Q Consensus 503 lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~ 582 (686)
+.+.+..++..-..+..+|..++.+...+. ..+..|=+.++.+.-++++-+..+.+|.+...--..+|++|.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~--------~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLD--------QEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444555544444422 223445556677766677777777777776666666666654
No 50
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.44 E-value=61 Score=30.85 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (686)
Q Consensus 434 L~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~ 479 (686)
+..++..+...+.+...+...+...=.++..+...+.++...+.++
T Consensus 107 id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 107 IDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3344444444444444444433333344444444555555444443
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.89 E-value=51 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005641 366 LASLQMNMESIMRNRELTET 385 (686)
Q Consensus 366 ls~lqaE~~~L~qel~~~ek 385 (686)
-+++..+++.|.+.+..++.
T Consensus 85 REkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.54 E-value=21 Score=33.21 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQEL 469 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQEL 469 (686)
...|+.++..++-++..++.++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 53
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.96 E-value=47 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~ 375 (686)
+.+|.+|...|..+..+-......+..++.+...
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777766665555444443333333333333
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.52 E-value=49 Score=28.88 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 344 EIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 344 ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
++..|..++..++.++.....++..+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445545544444444444443333
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.37 E-value=20 Score=30.55 Aligned_cols=43 Identities=5% Similarity=0.081 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005641 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (686)
Q Consensus 335 ~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~ 377 (686)
..+|...+..+..|+.+|..+++.+...+.+-..++.|..++.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444444444444444433
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.06 E-value=81 Score=33.90 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
|..++++.......+|.++..+..+++.++.++++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333444555555555555555555554
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.11 E-value=37 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh
Q 005641 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506 (686)
Q Consensus 453 eQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~ 506 (686)
..|..|..++..++.+|+.+..+..++- .....++-.|+.||.+.|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v------~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVV------LQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555543 12222344555666655544
No 58
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.65 E-value=59 Score=30.91 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005641 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (686)
Q Consensus 313 l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~ 382 (686)
+..|+.++...+..+.+.+.+ +..+...++.|...+.+++-++.....++..++.|++.|.++.=.
T Consensus 70 I~~L~~El~~l~~ki~dLeee----l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEV----IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333 233444556666666677777777777777777777666665544
No 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=67.31 E-value=54 Score=28.02 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 419 Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
|...||........++..++..++.-..++..|+-+++.+..++.++++...++=.++++
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433233566778888888888999999999999999998888877776666654
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.08 E-value=1.2e+02 Score=32.56 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 313 IKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 313 l~~LQ~eL~~eQ~~~~q~ese 333 (686)
-.-||+.|.+.|.++.+.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 335666666666666665544
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.94 E-value=42 Score=30.63 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 513 kL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
.|..|..++..|+.+++.++... ......|+.||.+|--+|.+..........|..-|+.+++.+..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~----q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES----QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777765322 23347899999999999999998888888898888888887643
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.35 E-value=79 Score=35.53 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHhhhchhHHHHH
Q 005641 645 ATRFLWRYPIARIIL 659 (686)
Q Consensus 645 ~g~fLRR~P~aRl~~ 659 (686)
|.-|.+|+|-.=-||
T Consensus 487 ld~~~~rhpd~~~ff 501 (562)
T 3ghg_A 487 LDGFRHRHPDEAAFF 501 (562)
T ss_dssp ---------------
T ss_pred hhhhhhhCcchHhhc
Confidence 445666666654443
No 63
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=65.28 E-value=1.7e+02 Score=33.22 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEV 327 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~ 327 (686)
+++++++.+|...+.+++..+
T Consensus 522 ~~~~e~~~ql~~kme~~~~~~ 542 (592)
T 1f5n_A 522 RSYQEHLKQLTEKMENDRVQL 542 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445444444444333
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.93 E-value=83 Score=28.66 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 005641 318 QELSVYKSEVTK 329 (686)
Q Consensus 318 ~eL~~eQ~~~~q 329 (686)
.+|.+.|..+..
T Consensus 32 ~qLTqAQe~l~~ 43 (121)
T 3mq7_A 32 QELTEAQKGFQD 43 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 65
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.50 E-value=71 Score=27.00 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Q 005641 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503 (686)
Q Consensus 424 EeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~l 503 (686)
...++.|..++.+++.....+ +..+...+..++.++.+++++++....++..+- ...-+|.-|++.+
T Consensus 7 ~~~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll----------nvK~~Ld~EIatY 73 (84)
T 1gk4_A 7 KGTNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLL----------NVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHH
Confidence 344445555555555544443 556666666677777777776654443333221 1113567777777
Q ss_pred Hhh
Q 005641 504 RQG 506 (686)
Q Consensus 504 R~~ 506 (686)
|.-
T Consensus 74 RkL 76 (84)
T 1gk4_A 74 RKL 76 (84)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 66
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=62.49 E-value=1.7e+02 Score=32.68 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
.+|.+|..-|.+|.|.|..-...+.++...+
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ 36 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAV 36 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666655555555554444
No 67
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.09 E-value=79 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 293 AQLEELLVAERELSRSYEARIKQLEQEL 320 (686)
Q Consensus 293 aqLEe~~~el~ek~~~Le~~l~~LQ~eL 320 (686)
..+...+..++.....+..++..++..+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444443
No 68
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.73 E-value=91 Score=28.03 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 005641 286 QEYKSENAQLE 296 (686)
Q Consensus 286 qel~~~~aqLE 296 (686)
..+...++.|+
T Consensus 30 d~~~~e~a~l~ 40 (119)
T 3ol1_A 30 DQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 69
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.24 E-value=77 Score=27.04 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLY 558 (686)
Q Consensus 544 ~eLE~qlr~Lte~Li 558 (686)
.+||.++..|+++|.
T Consensus 66 ~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 66 LDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666653
No 70
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.13 E-value=83 Score=27.33 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (686)
Q Consensus 441 L~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~ 474 (686)
+++..++...+..++..+...+..+..++..+..
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666555555555544443
No 71
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.47 E-value=69 Score=27.27 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=43.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (686)
Q Consensus 338 L~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~~lE 403 (686)
-......+++++.+.+.|+..+..+...++..+.+.++++.++..... ++..+=++|..+.+++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e-~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ-LLDVSLFELSELREGLA 72 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777777777766555 35555566666666654
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.11 E-value=1.5e+02 Score=33.45 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 568 ASEKAAAEFQLEKEM 582 (686)
Q Consensus 568 ~sEk~aL~~qLErl~ 582 (686)
-.|..-+++-||+--
T Consensus 232 l~ei~Qm~mvLE~~g 246 (562)
T 3ghg_A 232 LTDMPQMRMELERPG 246 (562)
T ss_dssp ---------------
T ss_pred hhhhhcEEEEEEecC
Confidence 467777888888864
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.95 E-value=79 Score=34.15 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
.+|+.++..|.+.+...=..|-.|..-...++..+.||+-..+-
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888887778888888888888888888776544
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.42 E-value=18 Score=32.13 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
.+..+++++..|+.+...|++++..++.++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999988
No 75
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=58.13 E-value=38 Score=29.63 Aligned_cols=74 Identities=9% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 005641 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD 498 (686)
Q Consensus 419 Re~eLEeEnaeLseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~ 498 (686)
.+..|+..++.|...+.+++.....+ ...+...+..++.++.++++++..--.++..+- ...-+|.-
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e---~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll----------nvKl~Le~ 79 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKE---KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL----------DVKLALDM 79 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 34455566667777777777766655 667777777788888777777755433332211 11124666
Q ss_pred HHHHHHh
Q 005641 499 EVERARQ 505 (686)
Q Consensus 499 EL~~lR~ 505 (686)
|++.+|.
T Consensus 80 EIatYrk 86 (95)
T 3mov_A 80 EISAYRK 86 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 76
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.08 E-value=1.2e+02 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (686)
Q Consensus 354 ~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekRilqsLe~eLkslq~ 400 (686)
.+.+.+...-.++.-++.+..+.-..+...+.+ +..|+.+|..+-+
T Consensus 70 eadrKyeE~~RKl~~~E~dLeraeeRae~aE~k-~~eLEeeL~~~~~ 115 (147)
T 2b9c_A 70 DADRKYEEVARKLVIIESDLERAEERAELSEGK-CAELEEELKTVTN 115 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333444444444555555555555555555554 4444444444433
No 77
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.34 E-value=2.3e+02 Score=31.33 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 005641 283 SRLQEYKSENAQLEE 297 (686)
Q Consensus 283 k~~qel~~~~aqLEe 297 (686)
+..++|+....+|+.
T Consensus 100 ~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 344444444444443
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.75 E-value=1.2e+02 Score=27.71 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005641 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (686)
Q Consensus 345 i~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ekR 386 (686)
+++|++.|..|.++| .+..++.++|..+...+..|
T Consensus 73 vqeLqgEI~~Lnq~L-------q~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 73 VEELEGEITTLNHKL-------QDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHhhchhhhhH
Confidence 455555555444443 33444444444444444333
No 79
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=53.86 E-value=65 Score=27.41 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhH
Q 005641 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQ 507 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq~EL~~lR~~~ 507 (686)
+..+...+..++.++.+++.+++....++..+- ...-+|.-|++.+|.-+
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll----------nvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELL----------DIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHH
Confidence 455556666666666666666654433332211 11235777777777543
No 80
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.58 E-value=59 Score=24.99 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341 (686)
Q Consensus 302 l~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ak 341 (686)
+.+++..|+..++.||.-+.+.-.+|...+.-+..|++.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888887765555433
No 81
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.90 E-value=1.2e+02 Score=26.54 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (686)
Q Consensus 505 ~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~ 583 (686)
..+..+++.|..++..|.+|+..+...+.++++. ..|+.|+.--.+--..--+.=|.+..||..|..+|..+..
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i-----~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV-----PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334445555555555555555555544333211 2334443333333333334455666777777777776665
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.15 E-value=2.7e+02 Score=29.90 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005641 421 VELEHRA 427 (686)
Q Consensus 421 ~eLEeEn 427 (686)
..+.+++
T Consensus 445 ~~~~~~~ 451 (487)
T 3oja_A 445 TQLAEEN 451 (487)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333344
No 83
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=49.94 E-value=80 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005641 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (686)
Q Consensus 301 el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~ 346 (686)
.+.+++..|+..++.||.-+.++-.+|...+.-+..|++.++....
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556888888888899999988888888888777666644444333
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=49.40 E-value=1.1e+02 Score=25.42 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 005641 342 NSEIETLVSSIDALKKQAALSEGNLASL 369 (686)
Q Consensus 342 e~ei~~Le~rL~~l~qel~~~k~~ls~l 369 (686)
+.++..|..+|..++.++.....++..+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444444444333
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.54 E-value=2.9e+02 Score=29.59 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (686)
Q Consensus 545 eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~q 577 (686)
.+++-++++-..+.++-..+..+...+.-|.-|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 344445555444444444444444444444333
No 86
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.71 E-value=33 Score=38.84 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=9.4
Q ss_pred hhhHHHHHhhhhHH
Q 005641 8 AEDLFEVVDRRAKL 21 (686)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (686)
+.+||+.|-++-.|
T Consensus 26 ~~ell~~V~~~LgL 39 (575)
T 2i1j_A 26 GKQLFDQVVKTIGL 39 (575)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 56777777666554
No 87
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.28 E-value=1.9e+02 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 430 LseAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
+...|...++.+.....++..+-++++.+..+...+.+-++..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666665555555555555555555555555555
No 88
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=45.70 E-value=51 Score=30.48 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 005641 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (686)
Q Consensus 295 LEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~ 374 (686)
-|.+-+.++++|+.++.++..++.++...+....- +...+.-+.+.|+..|-.=.......|.+++.++....
T Consensus 21 Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~-------~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~ 93 (130)
T 3cl3_D 21 ATKECQALEGRARAASEQARQLESEREALQQQHSV-------QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYH 93 (130)
T ss_dssp ------------------------------CTTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577788888888888887777542222222 22222444455555554333444456788888888888
Q ss_pred HHHHHHHHH
Q 005641 375 SIMRNRELT 383 (686)
Q Consensus 375 ~L~qel~~~ 383 (686)
.|.++....
T Consensus 94 ~LfqeYd~~ 102 (130)
T 3cl3_D 94 QLFQEYDNH 102 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 89
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.82 E-value=1.6e+02 Score=25.82 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 351 rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
++..|..++...+.-...=-+..+++..+-+.++.
T Consensus 41 ~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ 75 (94)
T 3jsv_C 41 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 75 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444455555544443333444444444333333
No 90
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.31 E-value=1.5e+02 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=16.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (686)
Q Consensus 278 ~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~ 318 (686)
+.-+++-+...+..+-.++..+++-..++..|...+..++.
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333344444333333333
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.19 E-value=3.4e+02 Score=29.36 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (686)
Q Consensus 431 seAL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el 476 (686)
.+...+|++++...+.+|..-=..+..|+..++.+.-+|+.|+..+
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555554454333366677777777777777777666
No 92
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.68 E-value=1.4e+02 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 305 LSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 305 k~~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
+...|+.++..++..|..-|......+.++
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455544444444444444
No 93
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.93 E-value=1.2e+02 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005641 511 ENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~ 530 (686)
..+|.++...++.|+-++..
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443
No 94
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.68 E-value=1.6e+02 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDM 472 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~l 472 (686)
+...++.++..+...+..+..++.+.
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 95
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.37 E-value=65 Score=36.41 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005641 512 NKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 512 ekL~~le~El~~Lr~qle~lk 532 (686)
++...++.++..|+.+|+.++
T Consensus 511 ekn~~lq~qL~~L~~el~~~r 531 (575)
T 2i1j_A 511 ERNERLHNQLKALKQDLARSC 531 (575)
T ss_dssp HHCHHHHHHHHHHHHHHHTTB
T ss_pred HhhHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666655
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.32 E-value=1.5e+02 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 499 EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
++..++..+..|+.+...|..++..|.-+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555565566666666666666666666666
No 97
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.26 E-value=1.7e+02 Score=25.19 Aligned_cols=87 Identities=9% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-REE---HMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (686)
Q Consensus 500 L~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~s-s~~---~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~ 575 (686)
+..++..+..+...+..+..++..+...+..+..+-..++ +.. .......+......+..-+..+..|..+...+.
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444455555555555555443222222 100 111122333333444444555666666666666
Q ss_pred HHHHHHHHHHH
Q 005641 576 FQLEKEMNRLQ 586 (686)
Q Consensus 576 ~qLErl~~~~~ 586 (686)
.+++.+...+.
T Consensus 92 ~~~~~l~~~~~ 102 (112)
T 1l8d_A 92 RELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 98
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.19 E-value=1.7e+02 Score=24.84 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHHHH
Q 005641 281 LSSRLQEYKSENAQLEE 297 (686)
Q Consensus 281 Lrk~~qel~~~~aqLEe 297 (686)
||.....+...++.++-
T Consensus 5 Lr~qi~~l~~e~~~l~~ 21 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEV 21 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 33444444444444443
No 99
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.14 E-value=99 Score=27.26 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (686)
Q Consensus 249 lqkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~ 326 (686)
.|..|...-..|.++|+. +..=|......|.++...|| ..+.+.+.|.++---|+.+|..-...
T Consensus 30 VQqELs~tfarLc~~Vd~----------t~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDM----------TQKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp -----CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555542 33333344444455555555 34556666777777777777654433
No 100
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.57 E-value=1.4e+02 Score=24.62 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 005641 323 YKSEVTKVESNL 334 (686)
Q Consensus 323 eQ~~~~q~esel 334 (686)
.|..+++....+
T Consensus 19 AQRafReRK~~~ 30 (70)
T 1gd2_E 19 AQRAFRKRKEDH 30 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555444
No 101
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.22 E-value=1.1e+02 Score=25.93 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 005641 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (686)
Q Consensus 324 Q~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE 372 (686)
+..++-..+++..++.-+..+...|...+.++++-......++.+++.+
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554445555555555554444444444444444433
No 102
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=35.65 E-value=2.9e+02 Score=26.13 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 388 IQALREELASVERRAEEERAAHNAT 412 (686)
Q Consensus 388 lqsLe~eLkslq~~lEqE~~aHs~T 412 (686)
.+-++.++.++++.++.=..+|...
T Consensus 109 ~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 109 VEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655544444444
No 103
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.61 E-value=2.1e+02 Score=24.46 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (686)
Q Consensus 516 ~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qL 578 (686)
.+=.||..|+-.++.+.+ . -..||+.|+.-+++|..-|.+++.=.+|..-|.-+|
T Consensus 23 ~L~qEi~~Lr~kv~elEn-------E-rlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELEN-------E-RNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------H-HHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445555555555332 1 156677777777777766666666666555554443
No 104
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.60 E-value=1.2e+02 Score=25.45 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005641 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (686)
Q Consensus 337 qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ 383 (686)
.|..++.+|..|+..+..-.+.+..+...+=.+--|+..|++++..+
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 34455556677776666555555555555555555666666665543
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.86 E-value=2e+02 Score=24.37 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 005641 286 QEYKSENAQL 295 (686)
Q Consensus 286 qel~~~~aqL 295 (686)
++|+.-.+.|
T Consensus 35 ~EL~~G~~KL 44 (78)
T 3iv1_A 35 EDLKKGHQKL 44 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhHHH
Confidence 3333333333
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.85 E-value=1.7e+02 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005641 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (686)
Q Consensus 435 ~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~el~r~q 480 (686)
-.+|..+.....++...+..+..|+.++...-.++..++.++.+++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444455555555555555555555555555554
No 107
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.80 E-value=2.1e+02 Score=24.00 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 005641 288 YKSENAQLEELLVA 301 (686)
Q Consensus 288 l~~~~aqLEe~~~e 301 (686)
++..++.||..+.+
T Consensus 6 l~~~~~sLE~~l~e 19 (84)
T 1gk4_A 6 LKGTNESLERQMRE 19 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544333
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.91 E-value=2.3e+02 Score=24.11 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 005641 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (686)
Q Consensus 332 sel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls 367 (686)
-++..++..+..++..|.+.++.+.-++..++.+-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444445555556666666655555555444433
No 109
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.82 E-value=2.3e+02 Score=24.01 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 005641 388 IQALREELASV 398 (686)
Q Consensus 388 lqsLe~eLksl 398 (686)
+-.|+.+|++=
T Consensus 65 K~~Le~EIatY 75 (86)
T 1x8y_A 65 KLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 33344444433
No 110
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.53 E-value=64 Score=35.02 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (686)
Q Consensus 290 ~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~e 331 (686)
++...|+..+.+++++...|+....+++.++......+.+.+
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777666655533
No 111
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.82 E-value=5.8e+02 Score=28.46 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 005641 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (686)
Q Consensus 302 l~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l 355 (686)
-|.++..++..+.++|.+-...+..+...-.++...-++.++++..++.+...+
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~a 60 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADA 60 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444444444555554444443
No 112
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.40 E-value=48 Score=33.94 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 547 E~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
+.++++|..++...+.+.+.|..+...++.+|+++...++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999998875444
No 113
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.27 E-value=2.5e+02 Score=23.80 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 557 LYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 557 LieKQ~qlE~L~sEk~aL~~qLErl~~~~ 585 (686)
|.+-....+.|...+..|..+|..+..++
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555566666666666666666665543
No 114
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.31 E-value=2.9e+02 Score=24.26 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (686)
Q Consensus 433 AL~~lQrkL~Ee~~ea~eLeeQis~LE~El~qlKQELq~le~e 475 (686)
.+..+...|..++........++..|+-++..++++|++..-.
T Consensus 47 TV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 47 TVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555555667778888888888888887643
No 115
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.76 E-value=1.4e+02 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005641 348 LVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (686)
Q Consensus 348 Le~rL~~l~qel~~~k~~ls~lqaE~~~L~q 378 (686)
|+.+...++.....+..+++-++.|+.+|.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333444555555556555554
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.71 E-value=91 Score=33.67 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005641 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350 (686)
Q Consensus 292 ~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~ 350 (686)
..+|++.+..+++.+..++..+..++.++...+..+...+.. +.+| .+++++|.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-rr~l---~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETV-RRTL---HNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHcCC
Confidence 345555555555566666666666666665555555444432 2333 444455543
No 117
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.12 E-value=2e+02 Score=24.80 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhh
Q 005641 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (686)
Q Consensus 322 ~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ 365 (686)
+.+...++.+.++..+...++.++..|...|..|..++..++.-
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455544455555555555555555555555544433
No 118
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.67 E-value=57 Score=33.64 Aligned_cols=24 Identities=4% Similarity=0.358 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 005641 511 ENKLSSLEAEVQKMRVEMAAMKRD 534 (686)
Q Consensus 511 EekL~~le~El~~Lr~qle~lk~d 534 (686)
+.++..++.++..++.++...+..
T Consensus 128 ~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 128 KAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554433
No 119
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.49 E-value=3.7e+02 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
|.++.+.++.++...|..++.....+
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i 100 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444443
No 120
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.17 E-value=6.4e+02 Score=27.94 Aligned_cols=91 Identities=7% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk 571 (686)
.+..|+..|..+.+.....-.-...+..-++.-..+...+.+-+.+|+. +|+.++-.|.+.+...=+.|-.|..-.
T Consensus 66 rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~----eLe~ri~yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 66 RIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVST----ELRRRIVTLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 572 AAAEFQLEKEMNRLQ 586 (686)
Q Consensus 572 ~aL~~qLErl~~~~~ 586 (686)
..++..+.||+...+
T Consensus 142 ~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 142 QEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 121
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.14 E-value=2.5e+02 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (686)
Q Consensus 282 rk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~ 322 (686)
++++...-.+.+||=..+..+.+.++.|+..+..||.+-..
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 34444444444444444445555555556566555555443
No 122
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=26.99 E-value=14 Score=32.69 Aligned_cols=14 Identities=0% Similarity=-0.088 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 005641 657 IILLFYLKSFAGIC 670 (686)
Q Consensus 657 l~~l~Y~vlLHlwV 670 (686)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 67888888999884
No 123
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.98 E-value=2.5e+02 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 441 ADERTAKAGELEQKVAMLEVECATLQ 466 (686)
Q Consensus 441 L~Ee~~ea~eLeeQis~LE~El~qlK 466 (686)
+...+.++.+++.+++.|+.++.+++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445567788888888888877765
No 124
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.11 E-value=1.9e+02 Score=23.06 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005641 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (686)
Q Consensus 346 ~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~ 377 (686)
..|+..+..+..+...++..++.++.|+..|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 125
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.50 E-value=2e+02 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 285 LQEYKSENAQLEELL 299 (686)
Q Consensus 285 ~qel~~~~aqLEe~~ 299 (686)
..-+.+....||..+
T Consensus 33 e~~V~~~l~~LE~~l 47 (409)
T 1m1j_C 33 RLTTDGELLEIEGLL 47 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHH
Confidence 333444444444433
No 126
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.29 E-value=2.2e+02 Score=31.58 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
-.|..+.+.++.++...|..++.....+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566655555555555543
No 127
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=25.11 E-value=3.2e+02 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 375 SIMRNRELTETRMIQALREELASVER 400 (686)
Q Consensus 375 ~L~qel~~~ekRilqsLe~eLkslq~ 400 (686)
.|.+++++++. +++.|..+|..+..
T Consensus 26 ~lrq~I~DKQ~-~i~~Lt~eLq~A~~ 50 (90)
T 4b6x_A 26 ALRQEIEDKQL-MVNNLTDELQDAID 50 (90)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46677777877 78888777666554
No 128
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.97 E-value=2.2e+02 Score=21.29 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 005641 496 WQDEVERA 503 (686)
Q Consensus 496 Lq~EL~~l 503 (686)
|++|+..+
T Consensus 5 lkselqal 12 (48)
T 1g6u_A 5 LKSELQAL 12 (48)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.84 E-value=2.7e+02 Score=22.24 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 448 AGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 448 a~eLeeQis~LE~El~qlKQELq~le 473 (686)
+.+|+.....|+..+..++.|+..++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 130
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.44 E-value=3.3e+02 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 343 ~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
.++.+|.-+++.++.+-.....++....++.-.|++.+..+..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 3445666666665555555555555555555555555544444
No 131
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=24.27 E-value=23 Score=30.76 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 005641 657 IILLFYLKSFAGICT 671 (686)
Q Consensus 657 l~~l~Y~vlLHlwV~ 671 (686)
++|++.+++||+|-=
T Consensus 69 l~FIa~VilLHI~gK 83 (87)
T 2ww9_C 69 VGFIFSVIALHLLTK 83 (87)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh
Confidence 678888999999963
No 132
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.21 E-value=1.5e+02 Score=30.15 Aligned_cols=26 Identities=8% Similarity=0.387 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005641 510 AENKLSSLEAEVQKMRVEMAAMKRDA 535 (686)
Q Consensus 510 lEekL~~le~El~~Lr~qle~lk~dl 535 (686)
.+..+..++.++..++.++...+..+
T Consensus 126 ~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 126 KQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp THHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555556666666666555443
No 133
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.18 E-value=1.9e+02 Score=29.18 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~e~~~~e 593 (686)
.-+-.|+..++..|...+..|+....|++++..+|+....++-+.+..+.
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556889999999999999999999999999999998876666554443
No 134
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.66 E-value=3.8e+02 Score=23.67 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=8.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH
Q 005641 359 AALSEGNLASLQMNMESIMRNR 380 (686)
Q Consensus 359 l~~~k~~ls~lqaE~~~L~qel 380 (686)
+...+..++.++.+...+...+
T Consensus 70 l~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 70 LQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333333
No 135
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=23.55 E-value=3.3e+02 Score=22.95 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=37.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEAR---IKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 275 av~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~---l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
.|.-..|+..-..+......++..+..++..+..|... --....+....+..|.+.-.++...|
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666555555555555555 44555666666666666666664444
No 136
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.49 E-value=7.8e+02 Score=27.17 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 005641 284 RLQEYKSENAQLEE 297 (686)
Q Consensus 284 ~~qel~~~~aqLEe 297 (686)
...-+++.+.+|+.
T Consensus 94 ~q~~V~~~LqeLe~ 107 (464)
T 1m1j_B 94 QEKTVKPVLRDLKD 107 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHhHHHHHHH
Confidence 33334444444444
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.47 E-value=2.7e+02 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~~ 587 (686)
.+|+.-|+.-.++|-+|+..|+.|..+.......+..+...++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666667766766666666666666666555544
No 138
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.04 E-value=2.4e+02 Score=30.81 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 307 RSYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 307 ~~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
-.|..+.+.++.++...|..++.....+
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566655555555555543
No 139
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.84 E-value=1.9e+02 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 282 SSRLQEYKSENAQLEELLVAERELSRSYEARI 313 (686)
Q Consensus 282 rk~~qel~~~~aqLEe~~~el~ek~~~Le~~l 313 (686)
+....-+..+|..|.+.++.-++.+..|.+.+
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555554444444444444333
No 140
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.74 E-value=1.2e+02 Score=31.01 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005641 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 532 (686)
Q Consensus 493 lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk 532 (686)
++.|+.++..+......+.+.+..+..++.+|+.+++.++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666777766666677788888888888888888865
No 141
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.84 E-value=1.3e+02 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005641 511 ENKLSSLEAEVQKMRVEM 528 (686)
Q Consensus 511 EekL~~le~El~~Lr~ql 528 (686)
..++..+..++.+|+.++
T Consensus 32 k~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 32 KEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.67 E-value=3.6e+02 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDME 473 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le 473 (686)
.++.+|+.+...|..++..|+.|+..++
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 143
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.57 E-value=4.2e+02 Score=25.97 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005641 334 LAEALAAKNSEIETLVSSIDALKKQAAL 361 (686)
Q Consensus 334 l~~qL~ake~ei~~Le~rL~~l~qel~~ 361 (686)
+..+|..++.+|+.|+.++.++..+...
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344445555556666555555555443
No 144
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.48 E-value=3.9e+02 Score=22.92 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 446 AKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (686)
Q Consensus 446 ~ea~eLeeQis~LE~El~qlKQELq~le~el~ 477 (686)
.++..|+.....|..++..|+.|+..++.-+.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666554443
No 145
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.26 E-value=1.9e+02 Score=26.65 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005641 357 KQAALSEGNLASLQMNMESIMRNRELTET 385 (686)
Q Consensus 357 qel~~~k~~ls~lqaE~~~L~qel~~~ek 385 (686)
.+++....++.....+++.+.++.-.++.
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~ 37 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASE 37 (130)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444333
No 146
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.94 E-value=2.8e+02 Score=29.99 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 308 SYEARIKQLEQELSVYKSEVTKVESNL 334 (686)
Q Consensus 308 ~Le~~l~~LQ~eL~~eQ~~~~q~esel 334 (686)
.|..+.+.++.++...|..++.....+
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555455544443
No 147
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.85 E-value=3.3e+02 Score=23.90 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 005641 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (686)
Q Consensus 315 ~LQ~eL~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~ 353 (686)
++|++|+..-..|.+.-+.....| +.+|..|..+|.
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~eL---~~EI~~L~~eI~ 64 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKHL---EEEIARLSKEID 64 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 555665555544544444432222 444455544443
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.78 E-value=3.8e+02 Score=22.51 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 508 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA 568 (686)
Q Consensus 508 ~~lEekL~~le~El~~Lr~qle~lk~dleq~ss~~~~eLE~qlr~Lte~LieKQ~qlE~L~ 568 (686)
..++.+|..++.++..|..+|.. -.++. .++. ++..|...|.+.+..|+.+.
T Consensus 25 e~le~~Ie~LE~~i~~le~~lad-----p~~y~---~d~~-~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVAD-----ASFFS---QPHE-QTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-----TTGGG---SCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----ccccc---CCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777766654 11112 2232 56666444444444444443
No 149
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.56 E-value=2.7e+02 Score=23.40 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhh
Q 005641 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (686)
Q Consensus 321 ~~eQ~~~~q~esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~ 364 (686)
.+.+...+..+.++..+...+..++..|...|..|..++..++.
T Consensus 28 krSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555566666666666666666555543
No 150
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.44 E-value=3.1e+02 Score=21.45 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005641 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (686)
Q Consensus 447 ea~eLeeQis~LE~El~qlKQELq~le~el~r 478 (686)
.+..|-.++..|..+...++.+++..+.+..|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 151
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.33 E-value=3.1e+02 Score=22.92 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 544 ~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~~ 586 (686)
..++.||-.|-..|.--...|+.|+........++.++..+++
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!