Query 005641
Match_columns 686
No_of_seqs 177 out of 197
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 03:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005641.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005641hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 49.9 57 0.0042 26.4 10.2 33 496-528 70-102 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 42.2 87 0.0063 25.8 10.6 97 284-380 2-132 (133)
3 d1seta1 a.2.7.1 (A:1-110) Sery 41.8 75 0.0055 25.6 9.6 19 568-586 77-95 (110)
4 d1seta1 a.2.7.1 (A:1-110) Sery 40.9 83 0.006 25.3 9.8 25 309-333 33-57 (110)
5 d2fcwa1 a.13.1.1 (A:216-320) a 17.7 2.5E+02 0.018 23.0 9.2 69 459-530 22-98 (105)
6 d2gfna2 a.121.1.1 (A:81-199) P 15.3 25 0.0018 28.9 1.3 14 650-663 20-33 (119)
7 d1k4ta1 a.2.8.1 (A:641-712) Eu 15.1 2.4E+02 0.018 21.6 9.1 29 508-536 5-33 (72)
8 d1cxzb_ a.2.6.1 (B:) Protein k 13.7 2.5E+02 0.018 22.2 7.0 65 250-318 20-84 (86)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 13.0 3.2E+02 0.023 21.9 14.1 94 492-585 2-132 (133)
10 d1qvra2 c.37.1.20 (A:149-535) 12.9 5.5E+02 0.04 24.7 12.5 106 274-380 237-363 (387)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.92 E-value=57 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005641 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528 (686)
Q Consensus 496 Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~ql 528 (686)
|...+..+......++..+..++.++.+++.++
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443444444444444444455544444
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.19 E-value=87 Score=25.77 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 005641 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV--------------------------------- 330 (686)
Q Consensus 284 ~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~--------------------------------- 330 (686)
++++|......++..+..++.....++..+.+++........--...
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~ 81 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Q ss_pred -HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005641 331 -ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (686)
Q Consensus 331 -esel~~qL~ake~ei~~Le~rL~~l~qel~~~k~~ls~lqaE~~~L~qel 380 (686)
+..+.++..-.+..+..|+..+..+..++...+..+..++...+++..-+
T Consensus 82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=41.76 E-value=75 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005641 568 ASEKAAAEFQLEKEMNRLQ 586 (686)
Q Consensus 568 ~sEk~aL~~qLErl~~~~~ 586 (686)
..+...+..++..+...+.
T Consensus 77 k~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 77 GEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=40.91 E-value=83 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 309 YEARIKQLEQELSVYKSEVTKVESN 333 (686)
Q Consensus 309 Le~~l~~LQ~eL~~eQ~~~~q~ese 333 (686)
|...+..++.++...|..++.....
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~ 57 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKR 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544444444443
No 5
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.66 E-value=2.5e+02 Score=22.98 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 459 EVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQ--------DEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (686)
Q Consensus 459 E~El~qlKQELq~le~el~r~qk~e~~~a~qv~~lk~Lq--------~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~ 530 (686)
+.++++++.||-.++.++.+.+-.- +...+...++. ..+..-......+++++++.-..|.+|...|+.
T Consensus 22 ~~EL~SlkeEL~HfE~rl~K~rH~~---~el~ls~ek~~~~e~~g~~~~~~~~~e~~~~le~kiKk~~~kV~Kl~~dLe~ 98 (105)
T d2fcwa1 22 DKELEAFREELKHFEAKIEKHNHYQ---KQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998887754100 00001111110 111222233455666666666667777666654
No 6
>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=15.32 E-value=25 Score=28.88 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=12.4
Q ss_pred hhchhHHHHHHHHH
Q 005641 650 WRYPIARIILLFYL 663 (686)
Q Consensus 650 RR~P~aRl~~l~Y~ 663 (686)
||-.++|+|+|||.
T Consensus 20 rrlamtrvflffya 33 (119)
T d2gfna2 20 RRLAMTRVFLFFYA 33 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 67789999999996
No 7
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.06 E-value=2.4e+02 Score=21.61 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005641 508 RDAENKLSSLEAEVQKMRVEMAAMKRDAE 536 (686)
Q Consensus 508 ~~lEekL~~le~El~~Lr~qle~lk~dle 536 (686)
..|.++|.....+|...+.++...+.++.
T Consensus 5 enLq~KI~~Kk~qi~~a~~e~K~ak~d~k 33 (72)
T d1k4ta1 5 MNLQTKIDAKKEQLADARRDLKSAKADAK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888777664
No 8
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.70 E-value=2.5e+02 Score=22.22 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (686)
Q Consensus 250 qkQlee~~~~LrsE~eal~~ke~qLav~~~RLrk~~qel~~~~aqLEe~~~el~ek~~~Le~~l~~LQ~ 318 (686)
+.++++....|+.++. |+=.|-.=+..|+++.+.-++..++++..+..-..++..|...+..|.+
T Consensus 20 q~~le~~r~~lr~eI~----KELKIKeGAENL~~attd~kk~~~~V~~eL~~sN~kL~~L~~eL~eLna 84 (86)
T d1cxzb_ 20 QQQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.96 E-value=3.2e+02 Score=21.93 Aligned_cols=94 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc--------------------------------
Q 005641 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS-------------------------------- 539 (686)
Q Consensus 492 ~lk~Lq~EL~~lR~~~~~lEekL~~le~El~~Lr~qle~lk~dleq~s-------------------------------- 539 (686)
.+..|...+..++.....+...+..+...+.++..-...++.=-+...
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~ 81 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Q ss_pred -----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 540 -----REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (686)
Q Consensus 540 -----s~~~~eLE~qlr~Lte~LieKQ~qlE~L~sEk~aL~~qLErl~~~~ 585 (686)
.....-+++|+..|...+..-+.++..+......+..+++++...+
T Consensus 82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=12.91 E-value=5.5e+02 Score=24.68 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHhhh-------hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005641 274 LARVCAGLS-------SRLQEYKSENAQLEELLVAE--------RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (686)
Q Consensus 274 Lav~~~RLr-------k~~qel~~~~aqLEe~~~el--------~ek~~~Le~~l~~LQ~eL~~eQ~~~~q~esel~~qL 338 (686)
|-..|++.+ +....+..+..+++.....+ .+++..++..+..++..+......|.+.... ...+
T Consensus 237 ld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~-l~~i 315 (387)
T d1qvra2 237 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREI-LRKL 315 (387)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHh------hhHHHHHHHHHHHHHHH
Q 005641 339 AAKNSEIETLVSSIDALKKQAALSE------GNLASLQMNMESIMRNR 380 (686)
Q Consensus 339 ~ake~ei~~Le~rL~~l~qel~~~k------~~ls~lqaE~~~L~qel 380 (686)
..++.++..+...+..+++.-+..+ ..+-.++.+...+....
T Consensus 316 ~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~ 363 (387)
T d1qvra2 316 REAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL 363 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHHh
Done!